Citrus Sinensis ID: 006898

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620------
Protein Sequence
MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCHRWWRKQSVPVWLSSLRIQMLMSVFLPLKPFSRLIM
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHcccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHcccccHHHHHHHHHcHHHHHHHccHHHHHHcHHHHHHHcccccHHHHHHHHHHHccccHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHccHHHHHHHHHHHccHHHHHHHcHHHHHHHHccccHHHHHHHHHcHHHHHHHHcHHHHHHcHHHHHHHHHccccHHHHHHHHccHHHHHHcccccHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHcHHHHHHccccccHHHHHHHHHHHHHHHHHHcHHHHHHHcHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHcc
Coil and Loop (DISEMBL)
mamvdeplyPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELipflsenndddDEVLLAMAEELGVFipyvggvehahvllppletlctveetCVRDKAVESLCRIGsqmresdlvdwYIPLVKRLAAGEWFTARVSACGLfhiaypsapdILKTELRSIYTQLcqddmpmvRRSAASNLgkfaatvepahlkTDIMSIFEdltqddqdSVRLLAVEGCAAlgkllepqdcvahILPVIVNFSQDKSWRVRYMVANQLYELCeavgpeptrmdlvPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCvkelssdssQHVRSALASVIMGmapllgkdatIEQLLPIFLSLlkdefpdvRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAsqlgvgffddKLGALCMQWLQDKVYSIRDAAANNLKRLAEefgpewamqhitpqvleminnphyLYRMTILRAISLLapvmgseitcsrllpvvinaskdrvpniKFNVAKVLQSLIpivdqsvstfsvspfSFMLYLNVNNFNVGFIFAAFPLVLFSCLALnychrwwrkqsvpvWLSSLRIQMLMSVflplkpfsrlim
Flexible Loop (DISEMBL)
MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIaralgeertrkelipflsennddDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCrigsqmresdlvdWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCeavgpeptrMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCHRWWRKQSVPVWLSSLRIQMLMsvflplkpfsrlim
Low Complexity Region (SEG)
MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQsvstfsvspfsfMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCHRWWRKQSVPVWLSSLRIQMLMSVFLPLKPFSRLIM
Disordered region (IsUnstruct)
******PLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLS*****DDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKEL******HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCHRWWRKQSVPVWLSSLRIQMLMSVFLPLKPF*****
Disordered Region (DISOPRED)
*AM*DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCHRWWRKQSVPVWLSSLRIQMLMSVFLPLKPFSRLIM
Disordered Region (DISEMBL)
MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKE**********SALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCHRWWRKQSVPVWLSSLRIQMLMSVFLPLKPFSRLIM
Disordered Region (DISPRO)
*****EPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCHRWWRKQSVPVWLSSLRIQMLMSVFLPLKPFSR***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCHRWWRKQSVPVWLSSLRIQMLMSVFLPLKPFSRLIM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	626	2.2.26 [Sep-21-2011]
Q38950	587	Serine/threonine-protein	yes	no	0.888	0.947	0.935	0.0
Q38951	587	Serine/threonine-protein	no	no	0.814	0.868	0.913	0.0
Q38845	588	Serine/threonine-protein	no	no	0.841	0.896	0.887	0.0
Q32PI5	589	Serine/threonine-protein	yes	no	0.881	0.937	0.595	0.0
P30153	589	Serine/threonine-protein	yes	no	0.883	0.938	0.594	0.0
P54612	589	Serine/threonine-protein	yes	no	0.883	0.938	0.594	0.0
Q76MZ3	589	Serine/threonine-protein	yes	no	0.883	0.938	0.594	0.0
P36875	395	Protein phosphatase PP2A	N/A	no	0.579	0.918	0.890	0.0
P54613	602	Serine/threonine-protein	no	no	0.881	0.916	0.586	0.0
Q4QQT4	601	Serine/threonine-protein	no	no	0.881	0.918	0.586	0.0

>sp|Q38950|2AAB_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Arabidopsis thaliana GN=PP2AA2 PE=1 SV=2

 Score = 1075 bits (2780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/556 (93%), Positives = 543/556 (97%)

Query: 1   MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           M+M+DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct: 1   MSMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELGVFIPYVGGVE+AHVLLPPLETL TVEETCVR+KAVESLCR+GSQMRES
Sbjct: 61  DEVLLAMAEELGVFIPYVGGVEYAHVLLPPLETLSTVEETCVREKAVESLCRVGSQMRES 120

Query: 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLVD +I LVKRLAAGEWFTARVSACG+FHIAYPSAPD+LKTELRS+YTQLCQDDMPMVR
Sbjct: 121 DLVDHFISLVKRLAAGEWFTARVSACGVFHIAYPSAPDMLKTELRSLYTQLCQDDMPMVR 180

Query: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
           R+AA+NLGKFAATVE AHLKTD+MS+FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCV 
Sbjct: 181 RAAATNLGKFAATVESAHLKTDVMSMFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVQ 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR +LVPAYVRLLRDNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
           AGKVTKFCRILNPE+AIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATIE LL
Sbjct: 301 AGKVTKFCRILNPEIAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           IPLLASQLGVGFFDDKLGALCMQWLQDKV+SIRDAAANNLKRLAEEFGPEWAMQHI PQV
Sbjct: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVHSIRDAAANNLKRLAEEFGPEWAMQHIVPQV 480

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           LEM+NNPHYLYRMTILRA+SLLAPVMGSEITCS+LLPVV+ ASKDRVPNIKFNVAKVLQS
Sbjct: 481 LEMVNNPHYLYRMTILRAVSLLAPVMGSEITCSKLLPVVMTASKDRVPNIKFNVAKVLQS 540

Query: 541 LIPIVDQSVSTFSVSP 556
           LIPIVDQSV   ++ P
Sbjct: 541 LIPIVDQSVVEKTIRP 556

The A subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Involved during developmental process such as seedling and floral developments. Seems to act as a negative regulator of PP2A catalytic activity.
Arabidopsis thaliana (taxid: 3702)

>sp|Q38951|2AAG_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A gamma isoform OS=Arabidopsis thaliana GN=PP2AA3 PE=1 SV=2

 Score = 1045 bits (2701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/556 (91%), Positives = 534/556 (96%)

Query: 1   MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           M+MVDEPLYPIAVLIDELKNDDIQ RLNSI+RLS IARALGEERTRKELIPFLSENNDDD
Sbjct: 1   MSMVDEPLYPIAVLIDELKNDDIQRRLNSIKRLSIIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELG FI YVGGVE+A+VLLPPLETL TVEETCVR+KAV+SLCRIG+QMRES
Sbjct: 61  DEVLLAMAEELGGFILYVGGVEYAYVLLPPLETLSTVEETCVREKAVDSLCRIGAQMRES 120

Query: 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLV+ + PL KRL+AGEWFTARVSACG+FHIAYPSAPD+LKTELRSIY QLCQDDMPMVR
Sbjct: 121 DLVEHFTPLAKRLSAGEWFTARVSACGIFHIAYPSAPDVLKTELRSIYGQLCQDDMPMVR 180

Query: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
           R+AA+NLGKFAAT+E AHLKTDIMS+FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA
Sbjct: 181 RAAATNLGKFAATIESAHLKTDIMSMFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR DLVPAY RLL DNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTDLVPAYARLLCDNEAEVRIAA 300

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
           AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATIE LL
Sbjct: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           IPLLASQLGVGFFD+KLGALCMQWLQDKV+SIR+AAANNLKRLAEEFGPEWAMQHI PQV
Sbjct: 421 IPLLASQLGVGFFDEKLGALCMQWLQDKVHSIREAAANNLKRLAEEFGPEWAMQHIVPQV 480

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           LEMINNPHYLYRMTILRA+SLLAPVMGSEITCS+LLP VI ASKDRVPNIKFNVAK++QS
Sbjct: 481 LEMINNPHYLYRMTILRAVSLLAPVMGSEITCSKLLPAVITASKDRVPNIKFNVAKMMQS 540

Query: 541 LIPIVDQSVSTFSVSP 556
           LIPIVDQ+V    + P
Sbjct: 541 LIPIVDQAVVENMIRP 556

The A subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Involved during developmental process such as seedling and floral developments. Seems to act as a negative regulator of PP2A catalytic activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38845|2AAA_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Arabidopsis thaliana GN=PP2AA1 PE=1 SV=1

 Score = 1016 bits (2628), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/549 (88%), Positives = 526/549 (95%)

Query: 1   MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSEN+DDD
Sbjct: 1   MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENSDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELGVFIP+VGG+E AHVLLPPLE+LCTVEETCVR+KAVESLC+IGSQM+E+
Sbjct: 61  DEVLLAMAEELGVFIPFVGGIEFAHVLLPPLESLCTVEETCVREKAVESLCKIGSQMKEN 120

Query: 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLV+ ++PLVKRLA GEWF ARVSACG+FH+AY    D+LKTELR+ Y+QLC+DDMPMVR
Sbjct: 121 DLVESFVPLVKRLAGGEWFAARVSACGIFHVAYQGCTDVLKTELRATYSQLCKDDMPMVR 180

Query: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
           R+AASNLGKFA TVE   L  +IM++F+DLT+DDQDSVRLLAVEGCAALGKLLEPQDCVA
Sbjct: 181 RAAASNLGKFATTVESTFLIAEIMTMFDDLTKDDQDSVRLLAVEGCAALGKLLEPQDCVA 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
            ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP+ TR DLVPAYVRLLRDNEAEVRIAA
Sbjct: 241 RILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPDCTRTDLVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
           AGKVTKFCR+LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKD+TIE LL
Sbjct: 301 AGKVTKFCRLLNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPILGKDSTIEHLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           +PLLASQLG+GFFDDKLGALCMQWLQDKVYSIR+AAANNLKRLAEEFGPEWAMQH+ PQV
Sbjct: 421 VPLLASQLGIGFFDDKLGALCMQWLQDKVYSIREAAANNLKRLAEEFGPEWAMQHLVPQV 480

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           L+M+NNPHYL+RM +LRAISL+APVMGSEITCS+ LPVV+ ASKDRVPNIKFNVAK+LQS
Sbjct: 481 LDMVNNPHYLHRMMVLRAISLMAPVMGSEITCSKFLPVVVEASKDRVPNIKFNVAKLLQS 540

Query: 541 LIPIVDQSV 549
           LIPIVDQSV
Sbjct: 541 LIPIVDQSV 549

The A subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Seems to act as a positive regulator of PP2A catalytic activity. Confers resistance to phosphatase inhibitors such as okadaic acid and cantharidin. Involved during developmental process such as seedling and floral developments, root gravitropism, and stomatal opening regulation. Involved in the regulation of auxin efflux, especially during basipetal (tips to base) auxin transport in roots, and appears to contribute to the perception of auxin efflux inhibitors such as 1-N-naphthylphthalamic acid (NPA) and to semicarbazone I (substituted phenylsemicarbazone of 2-acetylarylcarboxylic acids) (SCB-I). Modulates the magnitude of ethylene response in the hypocotyl and stem, and functions as a general positive transducer of early ABA signaling.

Arabidopsis thaliana (taxid: 3702)

>sp|Q32PI5|2AAA_BOVIN Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Bos taurus GN=PPP2R1A PE=1 SV=1

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/556 (59%), Positives = 420/556 (75%), Gaps = 4/556 (0%)

Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 7   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
           LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct: 67  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query: 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct: 127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
           S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct: 187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246

Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct: 247 TLRQAAEDKSWRVRYMVADKFTELHKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306

Query: 305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
            +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD+TIE LL
Sbjct: 307 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDSTIEHLL 366

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct: 427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct: 487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 546

Query: 541 LIPIVDQSVSTFSVSP 556
           + PI+D S     V P
Sbjct: 547 IGPILDNSTLQSEVKP 562

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Bos taurus (taxid: 9913)

>sp|P30153|2AAA_HUMAN Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Homo sapiens GN=PPP2R1A PE=1 SV=4

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/557 (59%), Positives = 419/557 (75%), Gaps = 4/557 (0%)

Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 7   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
           LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct: 67  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query: 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct: 127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
           S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct: 187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246

Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct: 247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306

Query: 305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
            +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct: 307 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct: 427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct: 487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 546

Query: 541 LIPIVDQSVSTFSVSPF 557
           + PI+D S     V P 
Sbjct: 547 IGPILDNSTLQSEVKPI 563

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Homo sapiens (taxid: 9606)

>sp|P54612|2AAA_PIG Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Sus scrofa GN=PPP2R1A PE=2 SV=2

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/557 (59%), Positives = 419/557 (75%), Gaps = 4/557 (0%)

Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 7   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
           LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct: 67  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query: 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct: 127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
           S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct: 187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246

Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct: 247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306

Query: 305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
            +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct: 307 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct: 427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct: 487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 546

Query: 541 LIPIVDQSVSTFSVSPF 557
           + PI+D S     V P 
Sbjct: 547 IGPILDNSTLQSEVKPI 563

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Sus scrofa (taxid: 9823)

>sp|Q76MZ3|2AAA_MOUSE Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Mus musculus GN=Ppp2r1a PE=1 SV=3

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/557 (59%), Positives = 419/557 (75%), Gaps = 4/557 (0%)

Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 7   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
           LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct: 67  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query: 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct: 127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
           S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct: 187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246

Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct: 247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306

Query: 305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
            +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct: 307 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct: 427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct: 487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 546

Query: 541 LIPIVDQSVSTFSVSPF 557
           + PI+D S     V P 
Sbjct: 547 IGPILDNSTLQSEVKPI 563

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Mus musculus (taxid: 10090)

>sp|P36875|2AAA_PEA Protein phosphatase PP2A regulatory subunit A (Fragment) OS=Pisum sativum PE=2 SV=1

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/364 (89%), Positives = 346/364 (95%), Gaps = 1/364 (0%)

Query: 194 VEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDK 253
           VE AHLKTDIMS+F+DLTQDDQDS R LAVEGCAALGKLLEPQDC+AHILPVIVNFSQDK
Sbjct: 1   VEAAHLKTDIMSVFDDLTQDDQDSFRFLAVEGCAALGKLLEPQDCLAHILPVIVNFSQDK 60

Query: 254 SWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP 313
           SWRVRYMVANQLYELCEAVGP+ T+ +LVPAYVRLLRDN AEVRIAAAGKV+KF RIL+P
Sbjct: 61  SWRVRYMVANQLYELCEAVGPDSTKTELVPAYVRLLRDNVAEVRIAAAGKVSKFSRILSP 120

Query: 314 ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPD 373
           ELAIQHILPCVKELS+DSSQHVRSALASVIMGMAP+LGKDATIEQLLPIFLSLLKDEFPD
Sbjct: 121 ELAIQHILPCVKELSTDSSQHVRSALASVIMGMAPVLGKDATIEQLLPIFLSLLKDEFPD 180

Query: 374 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF 433
           VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF
Sbjct: 181 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF 240

Query: 434 DDKLGALCMQWLQDKVYSIRDAAANNLKRL-AEEFGPEWAMQHITPQVLEMINNPHYLYR 492
           DDKLGAL MQWL+DK YSIR+AAANN+KRL AEEFGPEWAMQHI PQVL+MIN+PHYLYR
Sbjct: 241 DDKLGALIMQWLKDKEYSIRNAAANNVKRLAAEEFGPEWAMQHIIPQVLDMINDPHYLYR 300

Query: 493 MTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVSTF 552
           MTIL AISLLAPV+GSEIT + LLP+V+NASKDRVPNIKFNVAKVLQSLIPIVD+SV   
Sbjct: 301 MTILHAISLLAPVLGSEITSTNLLPLVVNASKDRVPNIKFNVAKVLQSLIPIVDESVVES 360

Query: 553 SVSP 556
           ++ P
Sbjct: 361 TIRP 364

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Pisum sativum (taxid: 3888)

>sp|P54613|2AAB_PIG Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform (Fragment) OS=Sus scrofa GN=PPP2R1B PE=2 SV=1

 Score =  648 bits (1671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/556 (58%), Positives = 416/556 (74%), Gaps = 4/556 (0%)

Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 20  DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRTELLPFLTDTIYDEDEVL 79

Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
           LA+AE+LG F   VGG + AH LLPPLE+L TVEET VRDKAVESL +I  +     L  
Sbjct: 80  LALAEQLGNFTGLVGGPDFAHCLLPPLESLATVEETVVRDKAVESLRQISQEHTPVALEA 139

Query: 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            ++PLVKRLA+G+WFT+R SACGLF + YP A + +K E+R  +  LC DD PMVRR+AA
Sbjct: 140 HFVPLVKRLASGDWFTSRTSACGLFSVCYPRASNAVKAEIRQHFRSLCSDDTPMVRRAAA 199

Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
           S LG+FA  +E   +K++I+ +F +L  D+QDSVRLLAVE C ++ +LL   D  A ++P
Sbjct: 200 SKLGEFAKVLELDSVKSEIVPLFTNLASDEQDSVRLLAVEACVSIAQLLSQDDLEALVMP 259

Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL  AVGP+ T  DL+PA+  LL+D EAEVR AAA KV
Sbjct: 260 TLRQAAEDKSWRVRYMVADKFSELQRAVGPKITLNDLIPAFQNLLKDCEAEVRAAAAHKV 319

Query: 305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
            + C  L  E    + +  ILPC+KEL SD++QHV+SALASVIMG++ +LGK+ TIE LL
Sbjct: 320 KELCENLPIEGRETIIMNQILPCIKELVSDTNQHVKSALASVIMGLSTILGKENTIEHLL 379

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 380 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 439

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA NNL +L ++FG EWA   I P+V
Sbjct: 440 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATNNLMKLVQKFGTEWAQNTIVPKV 499

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           L M N+P+YL+RMT L  I++L+   G EIT  ++LP+V+  + D+V N++FNVAK LQ 
Sbjct: 500 LVMANDPNYLHRMTTLFCINVLSEACGQEITTKQMLPIVLKMAGDQVANVRFNVAKSLQK 559

Query: 541 LIPIVDQSVSTFSVSP 556
           + PI+D       V P
Sbjct: 560 IGPILDTDALQEEVKP 575

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Sus scrofa (taxid: 9823)

>sp|Q4QQT4|2AAB_RAT Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Rattus norvegicus GN=Ppp2r1b PE=2 SV=1

 Score =  644 bits (1662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/556 (58%), Positives = 415/556 (74%), Gaps = 4/556 (0%)

Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 19  DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRTELLPFLTDTIYDEDEVL 78

Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
           LA+AE+LG F   VGG + AH LLPPLE+L TVEET VRDKAVESL +I  +     L  
Sbjct: 79  LALAEQLGNFTGLVGGPDFAHCLLPPLESLATVEETVVRDKAVESLRQISQEHTPVALEA 138

Query: 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            ++PLVKRLA+G+WFT+R SACGLF + YP A + +K E+R  +  LC DD PMVRR+AA
Sbjct: 139 HFVPLVKRLASGDWFTSRTSACGLFSVCYPRASNAVKAEIRQHFRSLCSDDTPMVRRAAA 198

Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
           S LG+FA  +E   +KT+I+ +F +L  D+QDSVRLLAVE C ++ +LL   D  A ++P
Sbjct: 199 SKLGEFAKVLELDSVKTEIVPLFTNLASDEQDSVRLLAVEACVSIAQLLSQDDLEALVMP 258

Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL +AVGP+    DL+PA+  LLRD EAEVR AAA KV
Sbjct: 259 TLRQAAEDKSWRVRYMVADKFSELQKAVGPKIALSDLIPAFQSLLRDCEAEVRAAAAHKV 318

Query: 305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
            + C  L  E    + +  ILP +KEL SD++QHV+SALASVIMG++ +LGK+ TIE LL
Sbjct: 319 RELCENLPTEGRETVIMNQILPYIKELVSDTNQHVKSALASVIMGLSTVLGKENTIEHLL 378

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 379 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 438

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA NNL +L ++FG EWA   I P+V
Sbjct: 439 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATNNLMKLVQKFGTEWAQNTIVPKV 498

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           L M N+P+YL+RMT L  I+ L+   G EIT  ++LP+V+  + D+V N++FNVAK LQ 
Sbjct: 499 LVMANDPNYLHRMTTLFCINALSEACGKEITTKQMLPIVLKMAGDQVANVRFNVAKSLQK 558

Query: 541 LIPIVDQSVSTFSVSP 556
           + PI+D +     V P
Sbjct: 559 IGPILDTNALQGEVKP 574

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	626
255576493	587	serine/threonine protein phosphatase 2a	0.888	0.947	0.960	0.0
449434642	587	PREDICTED: serine/threonine-protein phos	0.690	0.735	0.951	0.0
224101693	586	predicted protein [Populus trichocarpa]	0.896	0.957	0.944	0.0
353259711	587	serine/threonine protein phosphatase 2a	0.813	0.867	0.947	0.0
15230896	587	protein phosphatase 2A subunit A2 [Arabi	0.888	0.947	0.935	0.0
297818092	587	hypothetical protein ARALYDRAFT_904748 [	0.888	0.947	0.933	0.0
224108518	587	predicted protein [Populus trichocarpa]	0.888	0.947	0.937	0.0
683502	587	protein phosphatase 2A 65 kDa regulatory	0.884	0.943	0.933	0.0
225455902	587	PREDICTED: serine/threonine-protein phos	0.888	0.947	0.938	0.0
297734191	642	unnamed protein product [Vitis vinifera]	0.750	0.732	0.938	0.0

>gi|255576493|ref|XP_002529138.1| serine/threonine protein phosphatase 2a regulatory subunit A, putative [Ricinus communis] gi|223531417|gb|EEF33251.1| serine/threonine protein phosphatase 2a regulatory subunit A, putative [Ricinus communis]

 Score = 1092 bits (2825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 534/556 (96%), Positives = 544/556 (97%)

Query: 1   MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           M+ VDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct: 1   MSTVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES
Sbjct: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120

Query: 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLVDW+IPLVKRLAAGEWFTARVSACGLFHIAYPSAPD+LK ELRSIY+QLCQDDMPMVR
Sbjct: 121 DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDVLKAELRSIYSQLCQDDMPMVR 180

Query: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
           RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA
Sbjct: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR DLVPAYVRLLRDNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTDLVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
           AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATIEQLL
Sbjct: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEQLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM+HI PQV
Sbjct: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMRHIIPQV 480

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           LEM+ NPHYLYRMTILRAISLLAPVMGSEITCS+LLPVV  ASKDRVPNIKFNVAKVLQS
Sbjct: 481 LEMVTNPHYLYRMTILRAISLLAPVMGSEITCSKLLPVVATASKDRVPNIKFNVAKVLQS 540

Query: 541 LIPIVDQSVSTFSVSP 556
           LI IVDQSV   ++ P
Sbjct: 541 LISIVDQSVVEKTIRP 556

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434642|ref|XP_004135105.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Cucumis sativus] gi|449493464|ref|XP_004159301.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Cucumis sativus]

 Score = 1091 bits (2821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 529/556 (95%), Positives = 547/556 (98%)

Query: 1   MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           M+MVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct: 1   MSMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES
Sbjct: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120

Query: 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLVDW+IPLVKRLAAGEWFTARVSACGLFHIAYPSAP++LKTELRSIY QLCQDDMPMVR
Sbjct: 121 DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPEMLKTELRSIYGQLCQDDMPMVR 180

Query: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
           RSAA+NLGKFAAT+EPAHLKTDIM+IFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCV 
Sbjct: 181 RSAATNLGKFAATIEPAHLKTDIMTIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVL 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR DLVPAYVRLLRDNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTDLVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
           AGKVTKFCRIL+PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATIEQLL
Sbjct: 301 AGKVTKFCRILSPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEQLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHI PQV
Sbjct: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIVPQV 480

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           L+MINNPHYLYRMT+LRA+SLLAPVMGSEITC++LLPVVI++SKDRVPNIKFNVAKVLQS
Sbjct: 481 LDMINNPHYLYRMTVLRAVSLLAPVMGSEITCTKLLPVVISSSKDRVPNIKFNVAKVLQS 540

Query: 541 LIPIVDQSVSTFSVSP 556
           LIPIVDQ V   ++ P
Sbjct: 541 LIPIVDQPVVEKTIRP 556

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101693|ref|XP_002312385.1| predicted protein [Populus trichocarpa] gi|222852205|gb|EEE89752.1| predicted protein [Populus trichocarpa]

 Score = 1085 bits (2805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 530/561 (94%), Positives = 548/561 (97%)

Query: 1   MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           M+ V+EPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct: 1   MSTVEEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELGVFIP+VGGV++AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE+
Sbjct: 61  DEVLLAMAEELGVFIPFVGGVDYAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRET 120

Query: 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLV+W+IPLVKRLAAGEWFTARVSACGLFHIAYPSAPD LKTELRSIY+QLCQDDMPMVR
Sbjct: 121 DLVEWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDTLKTELRSIYSQLCQDDMPMVR 180

Query: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
           RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ+CVA
Sbjct: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQNCVA 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
           AGKVTKFCRIL+PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATIEQLL
Sbjct: 301 AGKVTKFCRILSPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEQLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           IPLLASQLGVGFFD+KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA+QHI PQV
Sbjct: 421 IPLLASQLGVGFFDEKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAVQHIIPQV 480

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           LEM  NPHYLYRMTILRA+SLLAPVMGSEITCS+LLPVVINASKDRVPNIKFN AKVLQS
Sbjct: 481 LEMSTNPHYLYRMTILRAVSLLAPVMGSEITCSKLLPVVINASKDRVPNIKFNAAKVLQS 540

Query: 541 LIPIVDQSVSTFSVSPFSFML 561
           LIPIVDQSV   ++ P  F L
Sbjct: 541 LIPIVDQSVVEKTICPCLFEL 561

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|353259711|gb|AEQ75494.1| serine/threonine protein phosphatase 2a regulatory subunit A [Rosa multiflora]

 Score = 1080 bits (2794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 527/556 (94%), Positives = 541/556 (97%)

Query: 1   MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           M+MVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGE+RTRKELIPFLSENNDDD
Sbjct: 1   MSMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEDRTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE 
Sbjct: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREG 120

Query: 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLV W+IPLVKRLAAGEWFTARVSACGLFHIAYPSA + LKTELRSIY+QLCQDDMPMVR
Sbjct: 121 DLVSWFIPLVKRLAAGEWFTARVSACGLFHIAYPSASETLKTELRSIYSQLCQDDMPMVR 180

Query: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
           RSAA+NLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCV 
Sbjct: 181 RSAATNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVQ 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP+PTR DLVPAYVRLLRDNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPDPTRTDLVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
           AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMA +LGKDATIEQLL
Sbjct: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMALVLGKDATIEQLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           IPLLASQLGVGFFDDKLG+LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHI PQV
Sbjct: 421 IPLLASQLGVGFFDDKLGSLCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIVPQV 480

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           LEMI+NPHYLYRMTILRAI LLAPVMGSEITCS+LLPVV+ ASKDRVPNIKFNVAKVLQS
Sbjct: 481 LEMIDNPHYLYRMTILRAICLLAPVMGSEITCSKLLPVVVTASKDRVPNIKFNVAKVLQS 540

Query: 541 LIPIVDQSVSTFSVSP 556
           LIPIVD SV   ++ P
Sbjct: 541 LIPIVDHSVVEKTIRP 556

Source: Rosa multiflora

Species: Rosa multiflora

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230896|ref|NP_189208.1| protein phosphatase 2A subunit A2 [Arabidopsis thaliana] gi|83287930|sp|Q38950.2|2AAB_ARATH RecName: Full=Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; Short=AtA beta; Short=PP2A, subunit A, beta isoform gi|7939566|dbj|BAA95767.1| protein phosphotase 2a 65kd regulatory subunit [Arabidopsis thaliana] gi|27311765|gb|AAO00848.1| protein phosphatase 2A 65 kDa regulatory subunit [Arabidopsis thaliana] gi|30725386|gb|AAP37715.1| At3g25800 [Arabidopsis thaliana] gi|332643548|gb|AEE77069.1| protein phosphatase 2A subunit A2 [Arabidopsis thaliana]

 Score = 1075 bits (2780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/556 (93%), Positives = 543/556 (97%)

Query: 1   MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           M+M+DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct: 1   MSMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELGVFIPYVGGVE+AHVLLPPLETL TVEETCVR+KAVESLCR+GSQMRES
Sbjct: 61  DEVLLAMAEELGVFIPYVGGVEYAHVLLPPLETLSTVEETCVREKAVESLCRVGSQMRES 120

Query: 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLVD +I LVKRLAAGEWFTARVSACG+FHIAYPSAPD+LKTELRS+YTQLCQDDMPMVR
Sbjct: 121 DLVDHFISLVKRLAAGEWFTARVSACGVFHIAYPSAPDMLKTELRSLYTQLCQDDMPMVR 180

Query: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
           R+AA+NLGKFAATVE AHLKTD+MS+FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCV 
Sbjct: 181 RAAATNLGKFAATVESAHLKTDVMSMFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVQ 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR +LVPAYVRLLRDNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
           AGKVTKFCRILNPE+AIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATIE LL
Sbjct: 301 AGKVTKFCRILNPEIAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           IPLLASQLGVGFFDDKLGALCMQWLQDKV+SIRDAAANNLKRLAEEFGPEWAMQHI PQV
Sbjct: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVHSIRDAAANNLKRLAEEFGPEWAMQHIVPQV 480

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           LEM+NNPHYLYRMTILRA+SLLAPVMGSEITCS+LLPVV+ ASKDRVPNIKFNVAKVLQS
Sbjct: 481 LEMVNNPHYLYRMTILRAVSLLAPVMGSEITCSKLLPVVMTASKDRVPNIKFNVAKVLQS 540

Query: 541 LIPIVDQSVSTFSVSP 556
           LIPIVDQSV   ++ P
Sbjct: 541 LIPIVDQSVVEKTIRP 556

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818092|ref|XP_002876929.1| hypothetical protein ARALYDRAFT_904748 [Arabidopsis lyrata subsp. lyrata] gi|297322767|gb|EFH53188.1| hypothetical protein ARALYDRAFT_904748 [Arabidopsis lyrata subsp. lyrata]

 Score = 1073 bits (2776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 519/556 (93%), Positives = 544/556 (97%)

Query: 1   MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           M+M+DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct: 1   MSMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELGVFIPYVGGVE+AHVLLPPLETL +VEETCVR+KAVESLCR+GSQM+ES
Sbjct: 61  DEVLLAMAEELGVFIPYVGGVEYAHVLLPPLETLSSVEETCVREKAVESLCRVGSQMKES 120

Query: 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLVD +IPLVKRLAAGEWFTARVSACG+FHIAYPSAPD+LKTELRS+YTQLCQDDMPMVR
Sbjct: 121 DLVDHFIPLVKRLAAGEWFTARVSACGVFHIAYPSAPDMLKTELRSLYTQLCQDDMPMVR 180

Query: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
           R+AA+NLGKFAAT+E AHLKTDIMS+F+DLTQDDQDSVRLLAVEGCAALGKLLEPQDCV 
Sbjct: 181 RAAATNLGKFAATIESAHLKTDIMSMFDDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVQ 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR +LVPAYVRLLRDNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
           AGKVTKFCRILNPE+AIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATIE LL
Sbjct: 301 AGKVTKFCRILNPEIAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           IPLLASQLGVGFFDDKLGALCMQWLQDKV+SIRDAAANNLKRLAEEFGPEWAMQHI PQV
Sbjct: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVHSIRDAAANNLKRLAEEFGPEWAMQHIVPQV 480

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           LEMINNPHYLYRMTILRA+SLLAPVMGSEITCS+LLPVV+ ASKDRVPNIKFNVAKVLQS
Sbjct: 481 LEMINNPHYLYRMTILRAVSLLAPVMGSEITCSKLLPVVMTASKDRVPNIKFNVAKVLQS 540

Query: 541 LIPIVDQSVSTFSVSP 556
           LIPIVDQSV   ++ P
Sbjct: 541 LIPIVDQSVVEKTIRP 556

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108518|ref|XP_002314877.1| predicted protein [Populus trichocarpa] gi|118484366|gb|ABK94060.1| unknown [Populus trichocarpa] gi|222863917|gb|EEF01048.1| predicted protein [Populus trichocarpa]

 Score = 1073 bits (2774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 521/556 (93%), Positives = 543/556 (97%)

Query: 1   MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           M+ ++EPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct: 1   MSTMEEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
           DEVLLA+AEELGVFIPYVGGVE+AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE+
Sbjct: 61  DEVLLALAEELGVFIPYVGGVEYAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRET 120

Query: 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLVDW+IPLVKRLAAGEWFT+RVSACGLFHIAYPSAP++LKTELRSIY+QLCQDDMPMVR
Sbjct: 121 DLVDWFIPLVKRLAAGEWFTSRVSACGLFHIAYPSAPEMLKTELRSIYSQLCQDDMPMVR 180

Query: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
           RSAASNLGKFAATVE  HLK DI+SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA
Sbjct: 181 RSAASNLGKFAATVESVHLKADILSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR DLVPAYVRLLRDNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTDLVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
           AGKVTKFCRIL+PE AIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATIEQLL
Sbjct: 301 AGKVTKFCRILSPEHAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEQLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM+HI PQV
Sbjct: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMEHIIPQV 480

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           LEM  NPHYLYRMTI+RA+SLLAPVMGSEITCS+LLPVV+NASKDRV NIKFNVAKVLQS
Sbjct: 481 LEMSTNPHYLYRMTIIRAVSLLAPVMGSEITCSKLLPVVVNASKDRVSNIKFNVAKVLQS 540

Query: 541 LIPIVDQSVSTFSVSP 556
           LIPIVDQSV+  ++ P
Sbjct: 541 LIPIVDQSVAEKTIRP 556

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|683502|emb|CAA57528.1| protein phosphatase 2A 65 kDa regulatory subunit [Arabidopsis thaliana]

 Score = 1071 bits (2770), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 519/556 (93%), Positives = 542/556 (97%)

Query: 1   MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           M+M+DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct: 1   MSMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELGVFIPYVGGVE+AHVLLPPLETL TVEETCVR+KAVESLCR+GSQMRES
Sbjct: 61  DEVLLAMAEELGVFIPYVGGVEYAHVLLPPLETLSTVEETCVREKAVESLCRVGSQMRES 120

Query: 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLVD +I LVKRLAAGEWFTARVSACG+FHIAYPSAPD+LKTELRS+YTQLCQDDMPMVR
Sbjct: 121 DLVDHFISLVKRLAAGEWFTARVSACGVFHIAYPSAPDMLKTELRSLYTQLCQDDMPMVR 180

Query: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
           R+AA+NLGKFAATVE AHLKTD+MS+FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCV 
Sbjct: 181 RAAATNLGKFAATVESAHLKTDVMSMFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVQ 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR +LVPAYVRLLRDNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
           AGKVTKFCRILNPE+AIQ ILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATIE LL
Sbjct: 301 AGKVTKFCRILNPEIAIQDILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           IPLLASQLGVGFFDDKLGALCMQWLQDKV+SIRDAAANNLKRLAEEFGPEWAMQHI PQV
Sbjct: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVHSIRDAAANNLKRLAEEFGPEWAMQHIVPQV 480

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           LEM+NNPHYLYRMTILRA+SLLAPVMGSEITCS+LLPVV+ ASKDRVPNIKFNVAKVLQS
Sbjct: 481 LEMVNNPHYLYRMTILRAVSLLAPVMGSEITCSKLLPVVMTASKDRVPNIKFNVAKVLQS 540

Query: 541 LIPIVDQSVSTFSVSP 556
           LIPIVDQSV   ++ P
Sbjct: 541 LIPIVDQSVVEKTIRP 556

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455902|ref|XP_002276180.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Vitis vinifera]

 Score = 1070 bits (2768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 522/556 (93%), Positives = 542/556 (97%)

Query: 1   MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           MAM+DEPLYPIAVLIDELKN+DIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct: 1   MAMIDEPLYPIAVLIDELKNEDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELGVFIPYVGGVEHA+VLLPPLETLCTVEETCVRDKAVESLCRIG+QMRE 
Sbjct: 61  DEVLLAMAEELGVFIPYVGGVEHANVLLPPLETLCTVEETCVRDKAVESLCRIGAQMREP 120

Query: 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLV+ +IPLVKRLAAGEWFTARVS+CGLFHIAYPSAP+ LKTELR+IY+QLCQDDMPMVR
Sbjct: 121 DLVESFIPLVKRLAAGEWFTARVSSCGLFHIAYPSAPETLKTELRAIYSQLCQDDMPMVR 180

Query: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
           RSAASNLGKFAATVE AHLK DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA
Sbjct: 181 RSAASNLGKFAATVEAAHLKADIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR DLVPAYVRLLRDNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDLVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
           AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATI+QLL
Sbjct: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIDQLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           IPLLASQLGVGFFDDKLGALCMQWL+DKVYSIRDAAANN+KRLAEEFGP+WAMQHI PQV
Sbjct: 421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIIPQV 480

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           L+MINNPHYLYRMTIL AISLLAPVMG EITCS+LLPVVINA+KDRVPNIKFNVAKVLQS
Sbjct: 481 LDMINNPHYLYRMTILHAISLLAPVMGPEITCSKLLPVVINAAKDRVPNIKFNVAKVLQS 540

Query: 541 LIPIVDQSVSTFSVSP 556
           L PIVDQSV   ++ P
Sbjct: 541 LTPIVDQSVVDKTIRP 556

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734191|emb|CBI15438.3| unnamed protein product [Vitis vinifera]

 Score = 1069 bits (2765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 522/556 (93%), Positives = 542/556 (97%)

Query: 1   MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           MAM+DEPLYPIAVLIDELKN+DIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct: 56  MAMIDEPLYPIAVLIDELKNEDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 115

Query: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
           DEVLLAMAEELGVFIPYVGGVEHA+VLLPPLETLCTVEETCVRDKAVESLCRIG+QMRE 
Sbjct: 116 DEVLLAMAEELGVFIPYVGGVEHANVLLPPLETLCTVEETCVRDKAVESLCRIGAQMREP 175

Query: 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
           DLV+ +IPLVKRLAAGEWFTARVS+CGLFHIAYPSAP+ LKTELR+IY+QLCQDDMPMVR
Sbjct: 176 DLVESFIPLVKRLAAGEWFTARVSSCGLFHIAYPSAPETLKTELRAIYSQLCQDDMPMVR 235

Query: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
           RSAASNLGKFAATVE AHLK DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA
Sbjct: 236 RSAASNLGKFAATVEAAHLKADIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 295

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR DLVPAYVRLLRDNEAEVRIAA
Sbjct: 296 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDLVPAYVRLLRDNEAEVRIAA 355

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
           AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATI+QLL
Sbjct: 356 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIDQLL 415

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 416 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 475

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           IPLLASQLGVGFFDDKLGALCMQWL+DKVYSIRDAAANN+KRLAEEFGP+WAMQHI PQV
Sbjct: 476 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIIPQV 535

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           L+MINNPHYLYRMTIL AISLLAPVMG EITCS+LLPVVINA+KDRVPNIKFNVAKVLQS
Sbjct: 536 LDMINNPHYLYRMTILHAISLLAPVMGPEITCSKLLPVVINAAKDRVPNIKFNVAKVLQS 595

Query: 541 LIPIVDQSVSTFSVSP 556
           L PIVDQSV   ++ P
Sbjct: 596 LTPIVDQSVVDKTIRP 611

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	626
TAIR|locus:2085994	587	PP2AA2 "protein phosphatase 2A	0.873	0.931	0.945	4.3e-276
TAIR|locus:2205354	587	PP2AA3 "AT1G13320" [Arabidopsi	0.873	0.931	0.925	4.2e-269
TAIR|locus:2031165	588	RCN1 "AT1G25490" [Arabidopsis	0.873	0.930	0.886	4.1e-262
UNIPROTKB|A5D973	589	PPP2R1A "Alpha isoform of regu	0.865	0.920	0.600	1.7e-169
UNIPROTKB|Q32PI5	589	PPP2R1A "Serine/threonine-prot	0.865	0.920	0.600	1.7e-169
UNIPROTKB|P30153	589	PPP2R1A "Serine/threonine-prot	0.865	0.920	0.600	2.8e-169
UNIPROTKB|F1PX75	589	PPP2R1A "Uncharacterized prote	0.865	0.920	0.600	3.6e-169
UNIPROTKB|P54612	589	PPP2R1A "Serine/threonine-prot	0.865	0.920	0.600	3.6e-169
MGI|MGI:1926334	589	Ppp2r1a "protein phosphatase 2	0.865	0.920	0.600	3.6e-169
RGD|620907	589	Ppp2r1a "protein phosphatase 2	0.865	0.920	0.600	3.6e-169

TAIR|locus:2085994 PP2AA2 "protein phosphatase 2A subunit A2" [Arabidopsis thaliana (taxid:3702)]

 Score = 2654 (939.3 bits), Expect = 4.3e-276, P = 4.3e-276
 Identities = 517/547 (94%), Positives = 538/547 (98%)

Query:     1 MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
             M+M+DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct:     1 MSMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query:    61 DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
             DEVLLAMAEELGVFIPYVGGVE+AHVLLPPLETL TVEETCVR+KAVESLCR+GSQMRES
Sbjct:    61 DEVLLAMAEELGVFIPYVGGVEYAHVLLPPLETLSTVEETCVREKAVESLCRVGSQMRES 120

Query:   121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
             DLVD +I LVKRLAAGEWFTARVSACG+FHIAYPSAPD+LKTELRS+YTQLCQDDMPMVR
Sbjct:   121 DLVDHFISLVKRLAAGEWFTARVSACGVFHIAYPSAPDMLKTELRSLYTQLCQDDMPMVR 180

Query:   181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
             R+AA+NLGKFAATVE AHLKTD+MS+FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCV 
Sbjct:   181 RAAATNLGKFAATVESAHLKTDVMSMFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVQ 240

Query:   241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
             HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR +LVPAYVRLLRDNEAEVRIAA
Sbjct:   241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAA 300

Query:   301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
             AGKVTKFCRILNPE+AIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATIE LL
Sbjct:   301 AGKVTKFCRILNPEIAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLL 360

Query:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
             PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query:   421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
             IPLLASQLGVGFFDDKLGALCMQWLQDKV+SIRDAAANNLKRLAEEFGPEWAMQHI PQV
Sbjct:   421 IPLLASQLGVGFFDDKLGALCMQWLQDKVHSIRDAAANNLKRLAEEFGPEWAMQHIVPQV 480

Query:   481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
             LEM+NNPHYLYRMTILRA+SLLAPVMGSEITCS+LLPVV+ ASKDRVPNIKFNVAKVLQS
Sbjct:   481 LEMVNNPHYLYRMTILRAVSLLAPVMGSEITCSKLLPVVMTASKDRVPNIKFNVAKVLQS 540

Query:   541 LIPIVDQ 547
             LIPIVDQ
Sbjct:   541 LIPIVDQ 547

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=ISS

GO:0042325 "regulation of phosphorylation" evidence=ISS

TAIR|locus:2205354 PP2AA3 "AT1G13320" [Arabidopsis thaliana (taxid:3702)]

 Score = 2588 (916.1 bits), Expect = 4.2e-269, P = 4.2e-269
 Identities = 506/547 (92%), Positives = 530/547 (96%)

Query:     1 MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
             M+MVDEPLYPIAVLIDELKNDDIQ RLNSI+RLS IARALGEERTRKELIPFLSENNDDD
Sbjct:     1 MSMVDEPLYPIAVLIDELKNDDIQRRLNSIKRLSIIARALGEERTRKELIPFLSENNDDD 60

Query:    61 DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
             DEVLLAMAEELG FI YVGGVE+A+VLLPPLETL TVEETCVR+KAV+SLCRIG+QMRES
Sbjct:    61 DEVLLAMAEELGGFILYVGGVEYAYVLLPPLETLSTVEETCVREKAVDSLCRIGAQMRES 120

Query:   121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
             DLV+ + PL KRL+AGEWFTARVSACG+FHIAYPSAPD+LKTELRSIY QLCQDDMPMVR
Sbjct:   121 DLVEHFTPLAKRLSAGEWFTARVSACGIFHIAYPSAPDVLKTELRSIYGQLCQDDMPMVR 180

Query:   181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
             R+AA+NLGKFAAT+E AHLKTDIMS+FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA
Sbjct:   181 RAAATNLGKFAATIESAHLKTDIMSMFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240

Query:   241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
             HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR DLVPAY RLL DNEAEVRIAA
Sbjct:   241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTDLVPAYARLLCDNEAEVRIAA 300

Query:   301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
             AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKDATIE LL
Sbjct:   301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLL 360

Query:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
             PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query:   421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
             IPLLASQLGVGFFD+KLGALCMQWLQDKV+SIR+AAANNLKRLAEEFGPEWAMQHI PQV
Sbjct:   421 IPLLASQLGVGFFDEKLGALCMQWLQDKVHSIREAAANNLKRLAEEFGPEWAMQHIVPQV 480

Query:   481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
             LEMINNPHYLYRMTILRA+SLLAPVMGSEITCS+LLP VI ASKDRVPNIKFNVAK++QS
Sbjct:   481 LEMINNPHYLYRMTILRAVSLLAPVMGSEITCSKLLPAVITASKDRVPNIKFNVAKMMQS 540

Query:   541 LIPIVDQ 547
             LIPIVDQ
Sbjct:   541 LIPIVDQ 547

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=ISS

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0000159 "protein phosphatase type 2A complex" evidence=TAS

GO:0042325 "regulation of phosphorylation" evidence=ISS

TAIR|locus:2031165 RCN1 "AT1G25490" [Arabidopsis thaliana (taxid:3702)]

 Score = 2522 (892.8 bits), Expect = 4.1e-262, P = 4.1e-262
 Identities = 485/547 (88%), Positives = 524/547 (95%)

Query:     1 MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
             MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSEN+DDD
Sbjct:     1 MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENSDDD 60

Query:    61 DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120
             DEVLLAMAEELGVFIP+VGG+E AHVLLPPLE+LCTVEETCVR+KAVESLC+IGSQM+E+
Sbjct:    61 DEVLLAMAEELGVFIPFVGGIEFAHVLLPPLESLCTVEETCVREKAVESLCKIGSQMKEN 120

Query:   121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVR 180
             DLV+ ++PLVKRLA GEWF ARVSACG+FH+AY    D+LKTELR+ Y+QLC+DDMPMVR
Sbjct:   121 DLVESFVPLVKRLAGGEWFAARVSACGIFHVAYQGCTDVLKTELRATYSQLCKDDMPMVR 180

Query:   181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
             R+AASNLGKFA TVE   L  +IM++F+DLT+DDQDSVRLLAVEGCAALGKLLEPQDCVA
Sbjct:   181 RAAASNLGKFATTVESTFLIAEIMTMFDDLTKDDQDSVRLLAVEGCAALGKLLEPQDCVA 240

Query:   241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
              ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP+ TR DLVPAYVRLLRDNEAEVRIAA
Sbjct:   241 RILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPDCTRTDLVPAYVRLLRDNEAEVRIAA 300

Query:   301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
             AGKVTKFCR+LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP+LGKD+TIE LL
Sbjct:   301 AGKVTKFCRLLNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPILGKDSTIEHLL 360

Query:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
             PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query:   421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
             +PLLASQLG+GFFDDKLGALCMQWLQDKVYSIR+AAANNLKRLAEEFGPEWAMQH+ PQV
Sbjct:   421 VPLLASQLGIGFFDDKLGALCMQWLQDKVYSIREAAANNLKRLAEEFGPEWAMQHLVPQV 480

Query:   481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
             L+M+NNPHYL+RM +LRAISL+APVMGSEITCS+ LPVV+ ASKDRVPNIKFNVAK+LQS
Sbjct:   481 LDMVNNPHYLHRMMVLRAISLMAPVMGSEITCSKFLPVVVEASKDRVPNIKFNVAKLLQS 540

Query:   541 LIPIVDQ 547
             LIPIVDQ
Sbjct:   541 LIPIVDQ 547

GO:0009723 "response to ethylene stimulus" evidence=IMP

GO:0009926 "auxin polar transport" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009738 "abscisic acid mediated signaling pathway" evidence=TAS

GO:0009789 "positive regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048364 "root development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=IMP

GO:0000159 "protein phosphatase type 2A complex" evidence=TAS

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IGI;ISS

UNIPROTKB|A5D973 PPP2R1A "Alpha isoform of regulatory subunit A, protein phosphatase 2" [Bos taurus (taxid:9913)]

 Score = 1648 (585.2 bits), Expect = 1.7e-169, P = 1.7e-169
 Identities = 328/546 (60%), Positives = 417/546 (76%)

Query:     5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
             D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct:     7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query:    65 LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
             LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct:    67 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query:   125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
              ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct:   127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query:   185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
             S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct:   187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246

Query:   245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
              +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct:   247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306

Query:   305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
              +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD+TIE LL
Sbjct:   307 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDSTIEHLL 366

Query:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
             P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct:   367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426

Query:   421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
             +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct:   427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486

Query:   481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
             L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct:   487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 546

Query:   541 LIPIVD 546
             + PI+D
Sbjct:   547 IGPILD 552

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0003823 "antigen binding" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

UNIPROTKB|Q32PI5 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Bos taurus (taxid:9913)]

 Score = 1648 (585.2 bits), Expect = 1.7e-169, P = 1.7e-169
 Identities = 328/546 (60%), Positives = 417/546 (76%)

Query:     5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
             D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct:     7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query:    65 LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
             LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct:    67 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query:   125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
              ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct:   127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query:   185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
             S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct:   187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246

Query:   245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
              +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct:   247 TLRQAAEDKSWRVRYMVADKFTELHKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306

Query:   305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
              +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD+TIE LL
Sbjct:   307 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDSTIEHLL 366

Query:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
             P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct:   367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426

Query:   421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
             +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct:   427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486

Query:   481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
             L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct:   487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 546

Query:   541 LIPIVD 546
             + PI+D
Sbjct:   547 IGPILD 552

GO:0005737 "cytoplasm" evidence=IDA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

UNIPROTKB|P30153 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Homo sapiens (taxid:9606)]

 Score = 1646 (584.5 bits), Expect = 2.8e-169, P = 2.8e-169
 Identities = 328/546 (60%), Positives = 416/546 (76%)

Query:     5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
             D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct:     7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query:    65 LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
             LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct:    67 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query:   125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
              ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct:   127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query:   185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
             S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct:   187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246

Query:   245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
              +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct:   247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306

Query:   305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
              +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct:   307 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366

Query:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
             P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct:   367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426

Query:   421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
             +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct:   427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486

Query:   481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
             L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct:   487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 546

Query:   541 LIPIVD 546
             + PI+D
Sbjct:   547 IGPILD 552

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=TAS

GO:0006470 "protein dephosphorylation" evidence=TAS

GO:0015630 "microtubule cytoskeleton" evidence=NAS

GO:0005634 "nucleus" evidence=NAS

GO:0005829 "cytosol" evidence=TAS

GO:0005739 "mitochondrion" evidence=NAS

GO:0016020 "membrane" evidence=NAS

GO:0010033 "response to organic substance" evidence=NAS

GO:0006672 "ceramide metabolic process" evidence=NAS

GO:0006917 "induction of apoptosis" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0008380 "RNA splicing" evidence=NAS

GO:0006275 "regulation of DNA replication" evidence=NAS

GO:0045595 "regulation of cell differentiation" evidence=NAS

GO:0030111 "regulation of Wnt receptor signaling pathway" evidence=NAS

GO:0000188 "inactivation of MAPK activity" evidence=NAS

GO:0042518 "negative regulation of tyrosine phosphorylation of Stat3 protein" evidence=NAS

GO:0030155 "regulation of cell adhesion" evidence=NAS

GO:0006461 "protein complex assembly" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0003823 "antigen binding" evidence=IPI

GO:0000159 "protein phosphatase type 2A complex" evidence=IDA;TAS

GO:0019932 "second-messenger-mediated signaling" evidence=NAS

GO:0040008 "regulation of growth" evidence=NAS

GO:0030308 "negative regulation of cell growth" evidence=NAS

GO:0007059 "chromosome segregation" evidence=IDA

GO:0000775 "chromosome, centromeric region" evidence=IDA

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

UNIPROTKB|F1PX75 PPP2R1A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1645 (584.1 bits), Expect = 3.6e-169, P = 3.6e-169
 Identities = 328/546 (60%), Positives = 416/546 (76%)

Query:     5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
             D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct:     7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query:    65 LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
             LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct:    67 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query:   125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
              ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct:   127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query:   185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
             S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct:   187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246

Query:   245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
              +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct:   247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306

Query:   305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
              +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct:   307 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366

Query:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
             P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct:   367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426

Query:   421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
             +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct:   427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486

Query:   481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
             L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct:   487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 546

Query:   541 LIPIVD 546
             + PI+D
Sbjct:   547 IGPILD 552

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0003823 "antigen binding" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

UNIPROTKB|P54612 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Sus scrofa (taxid:9823)]

 Score = 1645 (584.1 bits), Expect = 3.6e-169, P = 3.6e-169
 Identities = 328/546 (60%), Positives = 416/546 (76%)

Query:     5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
             D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct:     7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query:    65 LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
             LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct:    67 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query:   125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
              ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct:   127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query:   185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
             S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct:   187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246

Query:   245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
              +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct:   247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306

Query:   305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
              +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct:   307 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366

Query:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
             P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct:   367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426

Query:   421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
             +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct:   427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486

Query:   481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
             L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct:   487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 546

Query:   541 LIPIVD 546
             + PI+D
Sbjct:   547 IGPILD 552

GO:0000775 "chromosome, centromeric region" evidence=ISS

GO:0007059 "chromosome segregation" evidence=ISS

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0003823 "antigen binding" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

MGI|MGI:1926334 Ppp2r1a "protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform" [Mus musculus (taxid:10090)]

 Score = 1645 (584.1 bits), Expect = 3.6e-169, P = 3.6e-169
 Identities = 328/546 (60%), Positives = 416/546 (76%)

Query:     5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
             D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct:     7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query:    65 LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
             LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct:    67 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query:   125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
              ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct:   127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query:   185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
             S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct:   187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246

Query:   245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
              +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct:   247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306

Query:   305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
              +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct:   307 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366

Query:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
             P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct:   367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426

Query:   421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
             +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct:   427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486

Query:   481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
             L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct:   487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 546

Query:   541 LIPIVD 546
             + PI+D
Sbjct:   547 IGPILD 552

GO:0000159 "protein phosphatase type 2A complex" evidence=ISO;IDA

GO:0000775 "chromosome, centromeric region" evidence=ISO

GO:0003823 "antigen binding" evidence=ISO

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005694 "chromosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0007059 "chromosome segregation" evidence=ISO

GO:0042981 "regulation of apoptotic process" evidence=IMP

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IDA

RGD|620907 Ppp2r1a "protein phosphatase 2, regulatory subunit A, alpha" [Rattus norvegicus (taxid:10116)]

 Score = 1645 (584.1 bits), Expect = 3.6e-169, P = 3.6e-169
 Identities = 328/546 (60%), Positives = 416/546 (76%)

Query:     5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
             D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct:     7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query:    65 LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
             LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct:    67 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query:   125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
              ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct:   127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query:   185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
             S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct:   187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246

Query:   245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
              +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct:   247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306

Query:   305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
              +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct:   307 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366

Query:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
             P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct:   367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426

Query:   421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
             +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct:   427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486

Query:   481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
             L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct:   487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 546

Query:   541 LIPIVD 546
             + PI+D
Sbjct:   547 IGPILD 552

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA;ISO

GO:0000775 "chromosome, centromeric region" evidence=IEA;ISO

GO:0003823 "antigen binding" evidence=IEA;ISO

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0007059 "chromosome segregation" evidence=IEA;ISO

GO:0042981 "regulation of apoptotic process" evidence=IEA;ISO

GO:0046982 "protein heterodimerization activity" evidence=IEA;ISO

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P36179	2AAA_DROME	No assigned EC number	0.5842	0.8817	0.9340	yes	no
Q54QR9	2AAA_DICDI	No assigned EC number	0.5589	0.8929	0.9571	yes	no
Q32PI5	2AAA_BOVIN	No assigned EC number	0.5953	0.8817	0.9371	yes	no
Q38950	2AAB_ARATH	No assigned EC number	0.9352	0.8881	0.9471	yes	no
Q38845	2AAA_ARATH	No assigned EC number	0.8870	0.8418	0.8962	no	no
P30153	2AAA_HUMAN	No assigned EC number	0.5942	0.8833	0.9388	yes	no
P31383	2AAA_YEAST	No assigned EC number	0.4605	0.8610	0.8488	yes	no
P54612	2AAA_PIG	No assigned EC number	0.5942	0.8833	0.9388	yes	no
Q09543	2AAA_CAEEL	No assigned EC number	0.5044	0.8833	0.9372	yes	no
Q38951	2AAG_ARATH	No assigned EC number	0.9136	0.8146	0.8688	no	no
Q76MZ3	2AAA_MOUSE	No assigned EC number	0.5942	0.8833	0.9388	yes	no
Q9UT08	2AAA_SCHPO	No assigned EC number	0.5203	0.8594	0.9118	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	626
COG1413	335	COG1413, COG1413, FOG: HEAT repeat [Energy product	4e-06
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	5e-04
COG1413	335	COG1413, COG1413, FOG: HEAT repeat [Energy product	6e-04
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	0.002

>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]

 Score = 49.1 bits (117), Expect = 4e-06
 Identities = 62/305 (20%), Positives = 106/305 (34%), Gaps = 46/305 (15%)

Query: 3   MVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDE 62
           + D+     +  +  L +        +++ L+ +   +       E    L +  +D+D 
Sbjct: 1   LSDDADVVRSAAVLVLLSYGS-EAAAALQALAELDDLI--LELAPEAADELLKLLEDEDL 57

Query: 63  VL-LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD 121
           ++ L+ A  LG       G E A   +P L  L + E+  VRD A ++L  +G       
Sbjct: 58  LVRLSAAVALGEL-----GSEEA---VPLLRELLSDEDPRVRDAAADALGELGDPEA--- 106

Query: 122 LVDWYIPLVKRLAA-GEWFTARVSACGLFHI----AYPSAPDILKTELRSIYTQLCQDDM 176
                 PLV+ L           +A  L  +    A     + L+ E            +
Sbjct: 107 ----VPPLVELLENDENEGVRAAAARALGKLGDERALDPLLEALQDEDSGSAAAALDAAL 162

Query: 177 PMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ 236
             VR +AA  LG+         L         +L +D+   VR  A     ALG+L    
Sbjct: 163 LDVRAAAAEALGELGDPEAIPLLI--------ELLEDEDADVRRAAAS---ALGQLGSE- 210

Query: 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEV 296
                   ++V    D+S  VR            A+G      + V A  + L D +  +
Sbjct: 211 --NVEAADLLVKALSDESLEVR-------KAALLALGEIGDE-EAVDALAKALEDEDVIL 260

Query: 297 RIAAA 301
            + AA
Sbjct: 261 ALLAA 265

Length = 335

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 19/107 (17%), Positives = 36/107 (33%), Gaps = 6/107 (5%)

Query: 278 RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAI---QHILPCVKELSSDSSQH 334
           +   +PA V LL  ++  V+  AA  ++      N  +        LP + +L     + 
Sbjct: 5   QAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEE 64

Query: 335 VRSALASV---IMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNI 378
           V  A       +                +P  ++LL     D++ N 
Sbjct: 65  VVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNA 111

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]

 Score = 42.2 bits (99), Expect = 6e-04
 Identities = 57/211 (27%), Positives = 84/211 (39%), Gaps = 27/211 (12%)

Query: 210 LTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELC 269
           L +D+   VRL A     ALG+L   +      +P++     D+  RVR   A+ L EL 
Sbjct: 51  LLEDEDLLVRLSAAV---ALGELGSEE-----AVPLLRELLSDEDPRVRDAAADALGEL- 101

Query: 270 EAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS 329
              G       LV     L  D    VR AAA    +    L  E A+  +L  +++  S
Sbjct: 102 ---GDPEAVPPLVEL---LENDENEGVRAAAA----RALGKLGDERALDPLLEALQDEDS 151

Query: 330 DSSQHVR-SALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 388
            S+     +AL  V    A  LG+    E +  + + LL+DE  DVR    S L Q    
Sbjct: 152 GSAAAALDAALLDVRAAAAEALGELGDPEAIPLL-IELLEDEDADVRRAAASALGQ---- 206

Query: 389 IGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 419
             +   +      +V+   D    VR A + 
Sbjct: 207 --LGSENVEAADLLVKALSDESLEVRKAALL 235

Length = 335

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 16/95 (16%)

Query: 207 FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLY 266
            E L  D    VR  A     ALG+L +P+      LP ++   +D    VR   A  L 
Sbjct: 5   LEALLSDPDPEVRAAAAR---ALGELGDPE-----ALPALLELLKDPDPEVRRAAAEALG 56

Query: 267 ELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAA 301
           +L +         + +PA + LL+D++  V  AAA
Sbjct: 57  KLGDP--------EALPALLELLQDDDDAVVRAAA 83

This family includes multiple HEAT repeats. Length = 88

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	626
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	100.0
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	100.0
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	100.0
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	100.0
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.97
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.95
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.94
KOG1824	1233	consensus TATA-binding protein-interacting protein	99.94
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	99.93
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	99.93
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.91
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.91
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.9
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	99.9
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	99.89
KOG1242	569	consensus Protein containing adaptin N-terminal re	99.88
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.88
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.86
KOG1242	569	consensus Protein containing adaptin N-terminal re	99.86
KOG1824	1233	consensus TATA-binding protein-interacting protein	99.86
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.83
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.82
PRK09687	280	putative lyase; Provisional	99.82
PRK09687	280	putative lyase; Provisional	99.81
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.81
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.8
PTZ00429	746	beta-adaptin; Provisional	99.8
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	99.78
KOG0212	675	consensus Uncharacterized conserved protein [Funct	99.77
KOG0212	675	consensus Uncharacterized conserved protein [Funct	99.77
PTZ00429	746	beta-adaptin; Provisional	99.72
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	99.71
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.7
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.69
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.66
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.6
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.57
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	99.52
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	99.47
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.44
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.43
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	99.43
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.43
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	99.42
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	99.39
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	99.35
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	99.34
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.34
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	99.31
COG1413	335	FOG: HEAT repeat [Energy production and conversion	99.27
COG1413	335	FOG: HEAT repeat [Energy production and conversion	99.27
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	99.23
KOG1243	690	consensus Protein kinase [General function predict	99.23
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	99.19
KOG2259	823	consensus Uncharacterized conserved protein [Funct	99.19
KOG2259	823	consensus Uncharacterized conserved protein [Funct	99.19
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	99.18
TIGR02270	410	conserved hypothetical protein. Members are found	99.17
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	99.17
TIGR02270	410	conserved hypothetical protein. Members are found	99.16
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.14
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	99.14
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	99.12
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	99.11
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	99.1
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	99.05
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	99.04
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	99.04
KOG1243	690	consensus Protein kinase [General function predict	99.04
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	99.03
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	99.02
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	99.02
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	98.99
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	98.99
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	98.96
COG5096	757	Vesicle coat complex, various subunits [Intracellu	98.94
COG5096	757	Vesicle coat complex, various subunits [Intracellu	98.9
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	98.84
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	98.82
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	98.79
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	98.76
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	98.73
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	98.68
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.65
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	98.62
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	98.61
KOG0413	1529	consensus Uncharacterized conserved protein relate	98.59
KOG0413	1529	consensus Uncharacterized conserved protein relate	98.58
KOG2137	700	consensus Protein kinase [Signal transduction mech	98.57
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	98.53
KOG0567	289	consensus HEAT repeat-containing protein [General	98.53
PF05804	708	KAP: Kinesin-associated protein (KAP)	98.52
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	98.52
PF05804	708	KAP: Kinesin-associated protein (KAP)	98.52
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	98.48
KOG2137	700	consensus Protein kinase [Signal transduction mech	98.47
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	98.47
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	98.46
KOG0414	1251	consensus Chromosome condensation complex Condensi	98.44
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	98.44
KOG2062	929	consensus 26S proteasome regulatory complex, subun	98.43
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.38
KOG2032	533	consensus Uncharacterized conserved protein [Funct	98.37
KOG2025	892	consensus Chromosome condensation complex Condensi	98.36
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	98.35
KOG4653	982	consensus Uncharacterized conserved protein [Funct	98.34
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	98.33
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.33
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.31
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	98.31
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	98.31
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.29
KOG2062	929	consensus 26S proteasome regulatory complex, subun	98.29
KOG0567	289	consensus HEAT repeat-containing protein [General	98.29
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	98.24
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.24
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.24
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.24
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	98.23
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	98.23
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	98.21
KOG2032	533	consensus Uncharacterized conserved protein [Funct	98.18
KOG4653	982	consensus Uncharacterized conserved protein [Funct	98.18
KOG2025	892	consensus Chromosome condensation complex Condensi	98.17
PF05004	309	IFRD: Interferon-related developmental regulator (	98.13
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	98.07
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	98.06
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.05
KOG2956	516	consensus CLIP-associating protein [General functi	98.05
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	98.02
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.99
KOG0392	1549	consensus SNF2 family DNA-dependent ATPase domain-	97.96
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	97.95
PF05004	309	IFRD: Interferon-related developmental regulator (	97.95
KOG2956	516	consensus CLIP-associating protein [General functi	97.94
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	97.86
KOG0414	1251	consensus Chromosome condensation complex Condensi	97.83
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	97.79
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.76
COG5116	926	RPN2 26S proteasome regulatory complex component [	97.75
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	97.74
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	97.71
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	97.66
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	97.66
COG5656	970	SXM1 Importin, protein involved in nuclear import	97.66
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	97.66
COG5116	926	RPN2 26S proteasome regulatory complex component [	97.56
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	97.52
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	97.48
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.47
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	97.46
KOG1851	1710	consensus Uncharacterized conserved protein [Funct	97.44
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	97.44
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	97.43
KOG2933	334	consensus Uncharacterized conserved protein [Funct	97.41
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	97.36
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	97.3
COG5098	1128	Chromosome condensation complex Condensin, subunit	97.27
KOG2933	334	consensus Uncharacterized conserved protein [Funct	97.26
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	97.2
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	97.09
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	97.05
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	97.04
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.0
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.97
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	96.93
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	96.93
KOG2213	460	consensus Apoptosis inhibitor 5/fibroblast growth	96.81
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	96.77
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	96.74
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	96.7
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	96.52
PF12054	441	DUF3535: Domain of unknown function (DUF3535); Int	96.49
KOG2011	1048	consensus Sister chromatid cohesion complex Cohesi	96.47
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	96.41
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	96.39
KOG2011	1048	consensus Sister chromatid cohesion complex Cohesi	96.36
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	96.32
KOG0392	1549	consensus SNF2 family DNA-dependent ATPase domain-	96.31
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	96.28
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	96.28
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	96.26
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	96.21
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	96.18
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	96.17
KOG2021	980	consensus Nuclear mRNA export factor receptor LOS1	96.03
KOG2973	353	consensus Uncharacterized conserved protein [Funct	95.95
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	95.87
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	95.85
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	95.81
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	95.63
cd08050	343	TAF6 TATA Binding Protein (TBP) Associated Factor	95.6
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	95.56
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	95.54
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	95.49
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	95.33
KOG1851	1710	consensus Uncharacterized conserved protein [Funct	95.31
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	95.21
COG5098	1128	Chromosome condensation complex Condensin, subunit	94.98
PF04118	307	Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do	94.77
PF12054	441	DUF3535: Domain of unknown function (DUF3535); Int	94.66
KOG4524	1014	consensus Uncharacterized conserved protein [Funct	94.64
cd08050	343	TAF6 TATA Binding Protein (TBP) Associated Factor	94.63
KOG2213	460	consensus Apoptosis inhibitor 5/fibroblast growth	94.59
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	94.58
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	94.52
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	94.48
COG5234	993	CIN1 Beta-tubulin folding cofactor D [Posttranslat	94.46
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	94.46
PF05536	543	Neurochondrin: Neurochondrin	94.42
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	94.36
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	94.3
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	94.29
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	94.22
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	94.18
PF07571	92	DUF1546: Protein of unknown function (DUF1546); In	94.1
PF04118	307	Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do	94.03
COG5656	970	SXM1 Importin, protein involved in nuclear import	93.94
PF08713	213	DNA_alkylation: DNA alkylation repair enzyme; Inte	93.9
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	93.83
COG5095	450	TAF6 Transcription initiation factor TFIID, subuni	93.77
KOG2549	576	consensus Transcription initiation factor TFIID, s	93.66
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	93.56
KOG2022	982	consensus Nuclear transport receptor LGL2 (importi	93.45
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	93.41
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	93.37
KOG2081	559	consensus Nuclear transport regulator [Intracellul	92.65
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	92.6
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	92.58
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	92.47
KOG0889	3550	consensus Histone acetyltransferase SAGA, TRRAP/TR	92.39
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	92.38
PF08389	148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	92.05
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	91.88
KOG2021	980	consensus Nuclear mRNA export factor receptor LOS1	91.82
PF14868	559	DUF4487: Domain of unknown function (DUF4487)	91.82
KOG2022	982	consensus Nuclear transport receptor LGL2 (importi	91.8
KOG2038	988	consensus CAATT-binding transcription factor/60S r	91.72
KOG2549	576	consensus Transcription initiation factor TFIID, s	91.52
KOG3678	832	consensus SARM protein (with sterile alpha and arm	91.49
KOG2149	393	consensus Uncharacterized conserved protein [Funct	91.34
PF08161	198	NUC173: NUC173 domain; InterPro: IPR012978 This is	91.24
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	90.98
COG5095	450	TAF6 Transcription initiation factor TFIID, subuni	90.97
KOG2973	353	consensus Uncharacterized conserved protein [Funct	90.95
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	90.83
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	90.78
KOG0803	1312	consensus Predicted E3 ubiquitin ligase [Posttrans	90.67
KOG2149	393	consensus Uncharacterized conserved protein [Funct	90.67
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	90.57
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	90.44
PF08389	148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	90.3
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	90.25
PF05536	543	Neurochondrin: Neurochondrin	90.17
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	90.14
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	90.13
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	90.13
KOG0803	1312	consensus Predicted E3 ubiquitin ligase [Posttrans	90.1
KOG2005	878	consensus 26S proteasome regulatory complex, subun	90.1
KOG2005	878	consensus 26S proteasome regulatory complex, subun	90.09
COG5537	740	IRR1 Cohesin [Cell division and chromosome partiti	89.81
KOG1048	717	consensus Neural adherens junction protein Plakoph	89.65
PF08713	213	DNA_alkylation: DNA alkylation repair enzyme; Inte	89.63
PF08161	198	NUC173: NUC173 domain; InterPro: IPR012978 This is	89.54
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	89.42
KOG4524	1014	consensus Uncharacterized conserved protein [Funct	89.22
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	88.59
COG5101	1053	CRM1 Importin beta-related nuclear transport recep	88.46
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	88.44
PF12765	42	Cohesin_HEAT: HEAT repeat associated with sister c	88.13
PF08767	319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	87.96
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	87.86
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	87.79
KOG3678	832	consensus SARM protein (with sterile alpha and arm	87.66
PF07571	92	DUF1546: Protein of unknown function (DUF1546); In	87.6
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	87.31
PF12765	42	Cohesin_HEAT: HEAT repeat associated with sister c	87.27
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	87.21
KOG1932	1180	consensus TATA binding protein associated factor [	87.15
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	86.69
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	86.63
PF14868	559	DUF4487: Domain of unknown function (DUF4487)	85.97
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	85.56
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	85.19
COG5537	740	IRR1 Cohesin [Cell division and chromosome partiti	85.09
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	84.78
KOG0889	3550	consensus Histone acetyltransferase SAGA, TRRAP/TR	84.71
PF08623	169	TIP120: TATA-binding protein interacting (TIP20);	84.25
PF08064	107	UME: UME (NUC010) domain; InterPro: IPR012993 This	84.02
cd03561	133	VHS VHS domain family; The VHS domain is present i	83.65
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	83.46
PF08064	107	UME: UME (NUC010) domain; InterPro: IPR012993 This	83.06
PF09324	86	DUF1981: Domain of unknown function (DUF1981); Int	82.84
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	82.24
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	81.96
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	81.59
cd00197	115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	80.93
PF11935	239	DUF3453: Domain of unknown function (DUF3453); Int	80.82

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=100.00  E-value=8.6e-49  Score=400.40  Aligned_cols=583  Identities=54%  Similarity=0.798  Sum_probs=546.6

Q ss_pred             CCcccHHHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhccccccccCCchHHHHHHHHHHhccccccCCcchhh
Q 006898            6 EPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAH   85 (626)
Q Consensus         6 ~~~~~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~   85 (626)
                      ++.|||..++++++..|...|..+.+-+.+++..+|.+.++.+++|++.+..++..+|+.+++..+|.+.++.|++.+.+
T Consensus        79 ~~~~~ia~l~~e~~~~di~~r~~~~~~l~~~a~~~~~~~tr~~lipf~~e~~~~~dev~~~~a~~~~~~~~~v~~~~~~~  158 (759)
T KOG0211|consen   79 DSLYPIAVLIDELSNTDIQLRLNSGRKLSNLALALGVERTRLELIPFLTEAEDDEDEVLLDLAEQLGTFLPDVGGPEYAH  158 (759)
T ss_pred             cccccHHHHhhccCchhhhhhhhhhccccchhhhcccchhhhhhhhHHHHhccchhHHHHHHHHHhcccchhccchhHHH
Confidence            37999999999999999999999999999999999999999999999999668899999999999999999999999999


Q ss_pred             cchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCC-hHHHHHH
Q 006898           86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP-DILKTEL  164 (626)
Q Consensus        86 ~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~-~~~~~~l  164 (626)
                      .+++.+..+..+.+..+|+.+++.+..++...+++....++.|++..+..+++...|..+|.+++..+...+ +..+.++
T Consensus       159 ~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~el  238 (759)
T KOG0211|consen  159 MLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKREL  238 (759)
T ss_pred             HhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHH
Confidence            999999999999999999999999999999999988889999999999999988999999999999999998 5789999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCch-hhhhhhH
Q 006898          165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ-DCVAHIL  243 (626)
Q Consensus       165 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~i~  243 (626)
                      .+.+.++++|.++.||..+++-++.++...+.+...+.++|.+.++..|+.+.||..|...+..+.+.+... ...+.+.
T Consensus       239 r~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~  318 (759)
T KOG0211|consen  239 RPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLT  318 (759)
T ss_pred             HHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhh
Confidence            999999999999999999999999999999998888999999999999999999999999999999999886 7788899


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC----hHHHHHh
Q 006898          244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN----PELAIQH  319 (626)
Q Consensus       244 ~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~  319 (626)
                      +.+....+|++|.+|...+..+..+...+|.+....++.+.+...++|+.+++|.+++.....++....    .+...+.
T Consensus       319 ~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~  398 (759)
T KOG0211|consen  319 ESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSS  398 (759)
T ss_pred             HHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhh
Confidence            999999999999999999999999999999977777899999999999999999999999999998877    4455677


Q ss_pred             hHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHh---hHHHHhhhchhhHHh
Q 006898          320 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISK---LDQVNQVIGIDLLSQ  396 (626)
Q Consensus       320 l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~---L~~~~~~~~~~~~~~  396 (626)
                      ++|.+..+..|.+..||.+.+..+..+...+|.+.....+.|.+...++|.++.||......   +..+....|.+...+
T Consensus       399 ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~  478 (759)
T KOG0211|consen  399 ILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSN  478 (759)
T ss_pred             hhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhh
Confidence            88999999999999999999999999999999888888999999999999999999999954   444556678888889


Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhh
Q 006898          397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHI  476 (626)
Q Consensus       397 ~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~i  476 (626)
                      ..+|.+..+..+.+||+|.+.++.+..++...|..++.+.+.+.+..++.|....+|++|+..+..++..+|.+|....+
T Consensus       479 slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~  558 (759)
T KOG0211|consen  479 SLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEE  558 (759)
T ss_pred             hhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccchhhhcccc
Q 006898          477 TPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSP  556 (626)
Q Consensus       477 l~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~  556 (626)
                      +|.+..+..+++|..|++.+.++..+++.+|.+.+.+.++|.+..+.+|++++||.++++.|..+...+..+.....+.|
T Consensus       559 i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~p  638 (759)
T KOG0211|consen  559 IPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLP  638 (759)
T ss_pred             hHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999888899999


Q ss_pred             hHHhhhccCCCcccccccccCchhHHHHHHHHHHHHHhhcCC
Q 006898          557 FSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCHRWWRKQS  598 (626)
Q Consensus       557 ~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~~~~~~~~  598 (626)
                      ++. .+..|+|.+||+         +|..|++.+.......+
T Consensus       639 ll~-~L~~d~~~dvr~---------~a~~a~~~i~l~~~~~~  670 (759)
T KOG0211|consen  639 LLE-TLSSDQELDVRY---------RAILAFGSIELSRLESS  670 (759)
T ss_pred             HHH-HhccCcccchhH---------HHHHHHHHHHHHHHhhh
Confidence            999 999999999999         99999988865443333

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-31  Score=274.32  Aligned_cols=486  Identities=19%  Similarity=0.239  Sum_probs=430.7

Q ss_pred             cCccHHHHHHHHhhHHHHHHhhChHhhhhhhccccccc-cCCchHHHHHHHHHHhccccccCCcchhhcchHHHhhhhcC
Q 006898           19 KNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSEN-NDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTV   97 (626)
Q Consensus        19 ~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~-~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~   97 (626)
                      ..+...+|..++..+..++..+..+..++.+.|.+... .++.-.-|..++...+..+...........+.+....+.+|
T Consensus       169 ~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~d  248 (759)
T KOG0211|consen  169 TVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQD  248 (759)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhccc
Confidence            35566679999999999988888777778999999873 33333345555566666555554445667888999999999


Q ss_pred             cchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCCh--HHHHHHHHHHHHhcCCC
Q 006898           98 EETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD--ILKTELRSIYTQLCQDD  175 (626)
Q Consensus        98 ~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~--~~~~~l~~~l~~l~~d~  175 (626)
                      +++.||.++..-++.+++.++.+.....++|.+..+..|+...||..|...+..+...+..  +..+.+.+.+.+..+|.
T Consensus       249 ~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~  328 (759)
T KOG0211|consen  249 DTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDG  328 (759)
T ss_pred             cchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcCh
Confidence            9999999999999999999998888888999999999999999999999988887776644  56778889999999999


Q ss_pred             CHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc----hhhhhhhHHHHHHhcC
Q 006898          176 MPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQ  251 (626)
Q Consensus       176 ~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~i~~~l~~~~~  251 (626)
                      +|++|...+.....+...++++..+....+.+..+++|+.+++|.+...-...+......    ....+.++|.+..++.
T Consensus       329 ~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~  408 (759)
T KOG0211|consen  329 SWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVL  408 (759)
T ss_pred             hHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHh
Confidence            999999999999999999999878888999999999999999999999998888888773    4445667899999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhH---HHHHHhhChHHHHHhhHHHHHHhc
Q 006898          252 DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV---TKFCRILNPELAIQHILPCVKELS  328 (626)
Q Consensus       252 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l---~~l~~~~~~~~~~~~l~~~l~~l~  328 (626)
                      |.+.+||.+.+..+..+....|++...+.+.|.+...++|+.+.||......+   .......|...+.+..+|.+..+.
T Consensus       409 d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~  488 (759)
T KOG0211|consen  409 DNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELA  488 (759)
T ss_pred             cccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhc
Confidence            99999999999988888888888888889999999999999999999998544   344445677788899999999999


Q ss_pred             cCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcC
Q 006898          329 SDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED  408 (626)
Q Consensus       329 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~  408 (626)
                      .|.+|++|.++.+.++.++...|.+++.+.+.+.+..++.|...++|.+|...+..++..+|.+|....++|.+.....+
T Consensus       489 ~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q  568 (759)
T KOG0211|consen  489 EDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQ  568 (759)
T ss_pred             cchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999989999999999888


Q ss_pred             CChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCC
Q 006898          409 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPH  488 (626)
Q Consensus       409 ~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~  488 (626)
                      ++|.+|.+.+..+..++..+|.+.+.+.++|.+..+..|++++||..+++.+..+...+......+.+.|.+..+..|++
T Consensus       569 ~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~  648 (759)
T KOG0211|consen  569 DNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQE  648 (759)
T ss_pred             cccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCcc
Confidence            89999999999999999999999999999999999999999999999999999999999888788999999999999999


Q ss_pred             hHHHHHHHHHHHHhcc
Q 006898          489 YLYRMTILRAISLLAP  504 (626)
Q Consensus       489 ~~vR~~a~~~l~~i~~  504 (626)
                      .++|..|..+++.+..
T Consensus       649 ~dvr~~a~~a~~~i~l  664 (759)
T KOG0211|consen  649 LDVRYRAILAFGSIEL  664 (759)
T ss_pred             cchhHHHHHHHHHHHH
Confidence            9999999999987754

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.4e-28  Score=252.16  Aligned_cols=542  Identities=17%  Similarity=0.224  Sum_probs=423.1

Q ss_pred             ccHHHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhccccccc--cCCchHHHHHHHHHHhccccc----cCCcc
Q 006898            9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSEN--NDDDDEVLLAMAEELGVFIPY----VGGVE   82 (626)
Q Consensus         9 ~~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~--~~~~~~vr~~~~~~l~~~~~~----~~~~~   82 (626)
                      -++..|+..+.|+|.+.|..|-+.+.++...-       .+.|.|..+  ...+|++|..++-.+.++...    +. .+
T Consensus         4 ~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~-------~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~-~e   75 (1075)
T KOG2171|consen    4 APLEQLLQQLLSPDNEVRRQAEEALETLAKTE-------PLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLS-AE   75 (1075)
T ss_pred             hHHHHHHHHhcCCCchHHHHHHHHHHHhhccc-------chHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCC-HH
Confidence            46788999999999999999999999875422       267777772  457999999999888766442    11 12


Q ss_pred             hhhcchH-HHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChH--
Q 006898           83 HAHVLLP-PLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--  159 (626)
Q Consensus        83 ~~~~l~~-~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~--  159 (626)
                      ..+.+.. +|....+.+.+.||+.-+..+..+++..-++ -++.+++++.+..++.++..|..|..++..+...++..  
T Consensus        76 ~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~  154 (1075)
T KOG2171|consen   76 VQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQ  154 (1075)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccc
Confidence            2233333 4555667789999999999999999998887 78899999999999999999999999999988877763  


Q ss_pred             -HHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc-cchh---hhHHH----HHHHhhcCCchhHHHHHHHHHHHhh
Q 006898          160 -LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-AHLK---TDIMS----IFEDLTQDDQDSVRLLAVEGCAALG  230 (626)
Q Consensus       160 -~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-~~~~---~~ll~----~l~~l~~d~~~~vr~~a~~~l~~l~  230 (626)
                       +...+.++|.+.++|++..||-.++++++.++..... ...+   ..++|    .+...+.+.+...-..+++++..++
T Consensus       155 ~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~  234 (1075)
T KOG2171|consen  155 PHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELL  234 (1075)
T ss_pred             hhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHH
Confidence             6679999999999999988999999999999998852 2111   22344    4445566677777788889998888


Q ss_pred             cccCc--hhhhhhhHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHhCC-----CccccchHHHHHHhcCCCh--------
Q 006898          231 KLLEP--QDCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGP-----EPTRMDLVPAYVRLLRDNE--------  293 (626)
Q Consensus       231 ~~~~~--~~~~~~i~~~l~~~~~d~--~~~vR~~a~~~l~~l~~~~~~-----~~~~~~l~~~l~~~l~d~~--------  293 (626)
                      +..++  ..+...++.+......+.  +..+|..+.+.+..+++..+.     ......+++.++.++.|.+        
T Consensus       235 e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~  314 (1075)
T KOG2171|consen  235 ESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNE  314 (1075)
T ss_pred             hhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccc
Confidence            87776  445566666666665554  678999999999888776321     1234578888888764211        


Q ss_pred             --------HHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHH--HHHHhHHHHH
Q 006898          294 --------AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIF  363 (626)
Q Consensus       294 --------~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l  363 (626)
                              ..-...|.+++..++..+|++.+...+++.+..++.+++|+-|.++.-+++.+++..++.  ...+.+++++
T Consensus       315 d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~V  394 (1075)
T KOG2171|consen  315 DDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIV  394 (1075)
T ss_pred             cccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence                    113567889999999999999888999999999999999999999999999999877653  3467899999


Q ss_pred             HHhhcCCCHHHHHHHHHhhHHHHhhhchhhH---HhhHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHhhChhhHHHH---
Q 006898          364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVGFFDDK---  436 (626)
Q Consensus       364 ~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~---~~~i~~~l~~~~~~~-~~~~r~~~~~~l~~l~~~~~~~~~~~~---  436 (626)
                      .+.|+|+++.||.+|+.+++.+...++++..   .+.+.|.+...+.+. +.++...+..++-.+.+.+.++.+.++   
T Consensus       395 l~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~  474 (1075)
T KOG2171|consen  395 LNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDG  474 (1075)
T ss_pred             HhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            9999999999999999999999998887643   356677777777664 679999999999888887776655443   


Q ss_pred             HHH-HHHHHhcCCchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhhcCC----ChHHHHHHHHHHHHhccccChH
Q 006898          437 LGA-LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNP----HYLYRMTILRAISLLAPVMGSE  509 (626)
Q Consensus       437 l~p-~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~~~----~~~vR~~a~~~l~~i~~~~~~~  509 (626)
                      ++. .+..+++.+.+.||+.++.+++.++...+..+  ..+.++|.+.+.+...    ....|....+|++.++...|++
T Consensus       475 lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke  554 (1075)
T KOG2171|consen  475 LMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKE  554 (1075)
T ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhh
Confidence            333 44556678889999999999999999887764  3488899998876543    3557888899999999999977


Q ss_pred             Hhh---hcHHHHHhhh---CCCCCchHHHHHHHHHHHHHhhhccc--hhhhcccchHH
Q 006898          510 ITC---SRLLPVVINA---SKDRVPNIKFNVAKVLQSLIPIVDQS--VSTFSVSPFSF  559 (626)
Q Consensus       510 ~~~---~~~l~~l~~~---l~d~~~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~  559 (626)
                      .|.   +.++..+..+   ..|.++..|......++++++.+|++  ++.+.++|.+.
T Consensus       555 ~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~  612 (1075)
T KOG2171|consen  555 KFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLL  612 (1075)
T ss_pred             hhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHH
Confidence            554   4566666666   56777889999999999999999985  55666666655

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.5e-28  Score=248.52  Aligned_cols=577  Identities=19%  Similarity=0.257  Sum_probs=429.6

Q ss_pred             HHHHHHHhcCccHHHHHHHHhhHHHHHHhhChHh--hhhhhcccccc-ccCCchHHHHHHHHHHhccccccC-Ccc----
Q 006898           11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEER--TRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVG-GVE----   82 (626)
Q Consensus        11 i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~--~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~-~~~----   82 (626)
                      +.+|.++.+|+|+..|++|+..|..+....|...  ..+.+.+.+.+ ..|++..||-+++++++.++.+.. .+.    
T Consensus       120 l~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~  199 (1075)
T KOG2171|consen  120 LQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDK  199 (1075)
T ss_pred             HHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHH
Confidence            5678899999999999999999999988777543  24577788877 556666699999999999998874 222    


Q ss_pred             ---hhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcCh--hhHHHhHHHHHHHHhcCC--ccchhHHHhhHhHHhcCC
Q 006898           83 ---HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE--SDLVDWYIPLVKRLAAGE--WFTARVSACGLFHIAYPS  155 (626)
Q Consensus        83 ---~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~--~~~~~~l~~~l~~l~~~~--~~~~r~~a~~~l~~~~~~  155 (626)
                         ..+.++..+...+.+++.+.-..+.+++..+....++  ......++.+......++  +..+|..|.+++..+.+.
T Consensus       200 ~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~  279 (1075)
T KOG2171|consen  200 FRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEY  279 (1075)
T ss_pred             HHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHh
Confidence               2233444556667777777778888888888887665  223334566666666665  577999999999888777


Q ss_pred             CCh------HHHHHHHHHHHHhcC----CCC------------HHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcC
Q 006898          156 APD------ILKTELRSIYTQLCQ----DDM------------PMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD  213 (626)
Q Consensus       156 ~~~------~~~~~l~~~l~~l~~----d~~------------~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d  213 (626)
                      .+.      .....+++.++.+..    |+.            ..--..|.+++..++..+|++...+-+++.+..++.+
T Consensus       280 Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S  359 (1075)
T KOG2171|consen  280 APAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQS  359 (1075)
T ss_pred             hHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcC
Confidence            443      244566666666542    211            1245678899999999999999889999999999999


Q ss_pred             CchhHHHHHHHHHHHhhcccCc--hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc---cccchHHHHHHh
Q 006898          214 DQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP---TRMDLVPAYVRL  288 (626)
Q Consensus       214 ~~~~vr~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~  288 (626)
                      ++|.-|.+++.+++.+++++++  ....+.+++.+...++|++++||.+++.++|+++..++.+.   ..+.+.|.++..
T Consensus       360 ~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~  439 (1075)
T KOG2171|consen  360 TEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIAL  439 (1075)
T ss_pred             CCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHH
Confidence            9999999999999999999987  45688899999999999999999999999999999887653   234677788887


Q ss_pred             cCCCh-HHHHHHHHHhHHHHHHhhChHHH---HHhhHH-HHHHhccCCCHHHHHHHHHHHHhhhhhhcHHH--HHHhHHH
Q 006898          289 LRDNE-AEVRIAAAGKVTKFCRILNPELA---IQHILP-CVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLP  361 (626)
Q Consensus       289 l~d~~-~~vr~~a~~~l~~l~~~~~~~~~---~~~l~~-~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~  361 (626)
                      +.|.. +.|..+|+.++..+.+.+..+.+   .+.++. .+..+.++..+.||+.+..+++..+...+..+  +.+.++|
T Consensus       440 ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp  519 (1075)
T KOG2171|consen  440 LDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMP  519 (1075)
T ss_pred             hcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHH
Confidence            77655 78999999999999998877644   334444 44456778889999999999999998776643  5678999


Q ss_pred             HHHHhhcC----CCHHHHHHHHHhhHHHHhhhchhhHH---hhHHHHHHHH---hcCCChHHHHHHHHHHHHHHHhhChh
Q 006898          362 IFLSLLKD----EFPDVRLNIISKLDQVNQVIGIDLLS---QSLLPAIVEL---AEDRHWRVRLAIIEYIPLLASQLGVG  431 (626)
Q Consensus       362 ~l~~~l~d----~~~~vr~~a~~~L~~~~~~~~~~~~~---~~i~~~l~~~---~~~~~~~~r~~~~~~l~~l~~~~~~~  431 (626)
                      .+.+++..    +...+|...+++++.+...+|.+.+.   +.++..+...   ..+.+.+.|...+.++..+++.+|+.
T Consensus       520 ~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~  599 (1075)
T KOG2171|consen  520 LLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDD  599 (1075)
T ss_pred             HHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchh
Confidence            99998863    34678888999999999999987764   3455555555   34567788899999999999988876


Q ss_pred             h--HHHHHHHHHHHHhc--------C------------------------------------------------------
Q 006898          432 F--FDDKLGALCMQWLQ--------D------------------------------------------------------  447 (626)
Q Consensus       432 ~--~~~~l~p~l~~~l~--------d------------------------------------------------------  447 (626)
                      +  +.+.++|.++...+        |                                                      
T Consensus       600 F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~p  679 (1075)
T KOG2171|consen  600 FAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAP  679 (1075)
T ss_pred             hHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            5  34555665554321        0                                                      


Q ss_pred             ----------------CchHHHHHHHHHHHHHHHHh------ChHH---HhhhhHHHHHhhhcC-CChHHHHHHHHHHHH
Q 006898          448 ----------------KVYSIRDAAANNLKRLAEEF------GPEW---AMQHITPQVLEMINN-PHYLYRMTILRAISL  501 (626)
Q Consensus       448 ----------------~~~~VR~~a~~~l~~l~~~~------~~~~---~~~~il~~l~~~l~~-~~~~vR~~a~~~l~~  501 (626)
                                      -...||.+|++++..++...      ++..   ....+.|.+...+.+ ++..+-...++++++
T Consensus       680 Yve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~  759 (1075)
T KOG2171|consen  680 YVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAE  759 (1075)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHH
Confidence                            12345667776666665432      1111   124445555544433 455566666666666


Q ss_pred             hccccChH------------------------------------------------------------------------
Q 006898          502 LAPVMGSE------------------------------------------------------------------------  509 (626)
Q Consensus       502 i~~~~~~~------------------------------------------------------------------------  509 (626)
                      ..+.+|..                                                                        
T Consensus       760 ~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~  839 (1075)
T KOG2171|consen  760 CIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKGSFL  839 (1075)
T ss_pred             HHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHcccccc
Confidence            55544411                                                                        


Q ss_pred             HhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc--hhhhcccchHHhhhccCCCcccccccccCchhHHHHHHH
Q 006898          510 ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLAL  587 (626)
Q Consensus       510 ~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al  587 (626)
                      .+...+.|.+..++.++.+.-|..+.-+++.+++..|+.  .+...++|.+. ....|.+++||.         +|+-++
T Consensus       840 p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~-~~~~d~~pEVRq---------aAsYGi  909 (1075)
T KOG2171|consen  840 PFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEGCGEASAKYKERFLPLVL-EALQDSDPEVRQ---------AAAYGM  909 (1075)
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH-HHcCCCCHHHHH---------HHHHHH
Confidence            122567888888888888877999999999999998875  67788999999 999999999999         999999


Q ss_pred             HHHHHHhhcC
Q 006898          588 NYCHRWWRKQ  597 (626)
Q Consensus       588 ~~~~~~~~~~  597 (626)
                      +.+.+..+..
T Consensus       910 Gvlaq~~g~~  919 (1075)
T KOG2171|consen  910 GVLAQFGGED  919 (1075)
T ss_pred             HHHHHHcCcc
Confidence            9888765544

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.1e-28  Score=236.30  Aligned_cols=523  Identities=20%  Similarity=0.192  Sum_probs=373.1

Q ss_pred             ccCCchHHHHHHHHHHhccccccCCcchhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChh-------hHHHhHHH
Q 006898           56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES-------DLVDWYIP  128 (626)
Q Consensus        56 ~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~-------~~~~~l~~  128 (626)
                      +.|.++.+|...+..+..++.. ++-..|+.++|.|..++..++....+.|..+|.+|++.....       .....++|
T Consensus        99 lgd~~~lIr~tvGivITTI~s~-~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mip  177 (885)
T KOG2023|consen   99 LGDASPLIRATVGIVITTIAST-GGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIP  177 (885)
T ss_pred             ccCchHHHHhhhhheeeeeecc-cccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHH
Confidence            3466677777766666665543 335578999999999998888888999999999999876431       22345889


Q ss_pred             HHHHHhcCCccchhHHHhhHhHHhcCCCChH---HHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCcc--chhhhH
Q 006898          129 LVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDI  203 (626)
Q Consensus       129 ~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~---~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l  203 (626)
                      .+.++.++.++..|..|..++..+...-++.   ..+..+..+..+.+|+++.||+..|.++..+.+..+..  .....+
T Consensus       178 kfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~I  257 (885)
T KOG2023|consen  178 KFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNI  257 (885)
T ss_pred             HHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHH
Confidence            9999999999999999999999887766653   55778888889999999999999999999999876553  344567


Q ss_pred             HHHHHHhhcCCchhHHHHHHHHHHHhhcccCc----hhhhhhhHHHHHH----------hcC------------------
Q 006898          204 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVN----------FSQ------------------  251 (626)
Q Consensus       204 l~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~i~~~l~~----------~~~------------------  251 (626)
                      +.++....+|.+.+|-..|++.+.++++.--.    ..+.+.++|.+..          ++.                  
T Consensus       258 veyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPR  337 (885)
T KOG2023|consen  258 VEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPR  337 (885)
T ss_pred             HHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccch
Confidence            88888889999999999999999998876432    3456667776543          111                  


Q ss_pred             ------------------C----------CCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHh
Q 006898          252 ------------------D----------KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGK  303 (626)
Q Consensus       252 ------------------d----------~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~  303 (626)
                                        |          .+|..|++.+.+++.++..+|.+. ...++|.+.+.+..++|.+|++++-+
T Consensus       338 fhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~el-L~~l~PlLk~~L~~~~W~vrEagvLA  416 (885)
T KOG2023|consen  338 FHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDEL-LPILLPLLKEHLSSEEWKVREAGVLA  416 (885)
T ss_pred             hhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHH-HHHHHHHHHHHcCcchhhhhhhhHHH
Confidence                              0          138999999999999999988665 46788888888888999999999999


Q ss_pred             HHHHHHhhCh--HHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHH---HHHHhHHHHHHHhhcCCCHHHHHHH
Q 006898          304 VTKFCRILNP--ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNI  378 (626)
Q Consensus       304 l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a  378 (626)
                      +|.+++....  ......++|.+.+++.|+.+-||...|..++..++..-.+   .+...++.-++..+-|.+..|+++|
T Consensus       417 lGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAA  496 (885)
T KOG2023|consen  417 LGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAA  496 (885)
T ss_pred             HHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHH
Confidence            9999986532  2345788999999999999999999999999988755333   2333344445555669999999999


Q ss_pred             HHhhHHHHhhhchhhH--HhhHHHHHHHHh---cCCChHHHHHHHHHHHHHHHhh----ChhhHHHHHHHHHHH---Hhc
Q 006898          379 ISKLDQVNQVIGIDLL--SQSLLPAIVELA---EDRHWRVRLAIIEYIPLLASQL----GVGFFDDKLGALCMQ---WLQ  446 (626)
Q Consensus       379 ~~~L~~~~~~~~~~~~--~~~i~~~l~~~~---~~~~~~~r~~~~~~l~~l~~~~----~~~~~~~~l~p~l~~---~l~  446 (626)
                      +.++..+-+..|.+..  .+.|+..+....   +.+|-.+   ...+++.++...    .+..+.+.++|.+..   .+.
T Consensus       497 csAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlI---LYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~ls  573 (885)
T KOG2023|consen  497 CSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLI---LYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLS  573 (885)
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceeh---HHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcC
Confidence            9999999887776532  244555554443   3344333   345555666554    445556667776655   367


Q ss_pred             CCchHHHHHHHHHHHHHHHHhChHHH------hh---hhHHHHHh-h---hcC-----CChHHHHHHHHHHHHhccccCh
Q 006898          447 DKVYSIRDAAANNLKRLAEEFGPEWA------MQ---HITPQVLE-M---INN-----PHYLYRMTILRAISLLAPVMGS  508 (626)
Q Consensus       447 d~~~~VR~~a~~~l~~l~~~~~~~~~------~~---~il~~l~~-~---l~~-----~~~~vR~~a~~~l~~i~~~~~~  508 (626)
                      |++.++= --.+|+..++..+|..+.      .+   .++..-.+ +   -++     |+.+.-..++..++-+++.+|.
T Consensus       574 d~DKdLf-PLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~  652 (885)
T KOG2023|consen  574 DSDKDLF-PLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGS  652 (885)
T ss_pred             cccchHH-HHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhh
Confidence            7776653 456778888877765421      11   22221111 1   122     3444556777777777776654


Q ss_pred             H----HhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc--hhhhcccchHHhhhccCCCcccccccccCchhHH
Q 006898          509 E----ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLF  582 (626)
Q Consensus       509 ~----~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~  582 (626)
                      .    .....++..+..++.|+.++||+.+...||.+.....+.  +.....+|.+- .-++-....+-.         +
T Consensus       653 ~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg-~Nl~~~~isv~n---------N  722 (885)
T KOG2023|consen  653 HIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILG-ANLNPENISVCN---------N  722 (885)
T ss_pred             chHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHh-hcCChhhchHHH---------H
Confidence            2    345679999999999999999999999999998775331  22233333333 212222233344         8


Q ss_pred             HHHHHHHHHHHh
Q 006898          583 SCLALNYCHRWW  594 (626)
Q Consensus       583 a~~al~~~~~~~  594 (626)
                      |.+|++.+.--+
T Consensus       723 A~WAiGeia~k~  734 (885)
T KOG2023|consen  723 AIWAIGEIALKM  734 (885)
T ss_pred             HHHHHHHHHHHh
Confidence            999999886433

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2.6e-25  Score=215.00  Aligned_cols=555  Identities=18%  Similarity=0.180  Sum_probs=384.7

Q ss_pred             HHHHHHHhcCccHHHHHHHHhhHHHHHHh----hChH---hhhhhhcccccc-ccCCchHHHHHHHHHHhccccccCCc-
Q 006898           11 IAVLIDELKNDDIQLRLNSIRRLSTIARA----LGEE---RTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGV-   81 (626)
Q Consensus        11 i~~l~~~l~s~d~~~r~~a~~~l~~i~~~----~~~~---~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~-   81 (626)
                      +..|.+.|.++|......|..+|.+|.+-    ++.+   +-.+-++|-+.+ ..+++|.+|.-+..++.+++...... 
T Consensus       130 Lp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal  209 (885)
T KOG2023|consen  130 LPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQAL  209 (885)
T ss_pred             HHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHH
Confidence            56788889999999999999999998552    2211   233456777777 57889999999999999887754432 


Q ss_pred             -chhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHH---hHHHHHHHHhcCCccchhHHHhhHhHHhcCCCC
Q 006898           82 -EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD---WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP  157 (626)
Q Consensus        82 -~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~---~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~  157 (626)
                       ...+.++..+..+.+|+++.||+..+.++.-+.+..+. .+.+   .++.++.....|.+..+...||+....+++..-
T Consensus       210 ~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d-kl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi  288 (885)
T KOG2023|consen  210 YVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD-KLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPI  288 (885)
T ss_pred             HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH-hcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcC
Confidence             23455666667778999999999999999888776543 3333   356666777788888898999998887766432


Q ss_pred             -h----HHHHHHHHHHHHhc----------C------------------------------------C----------CC
Q 006898          158 -D----ILKTELRSIYTQLC----------Q------------------------------------D----------DM  176 (626)
Q Consensus       158 -~----~~~~~l~~~l~~l~----------~------------------------------------d----------~~  176 (626)
                       +    .+...++|.++...          +                                    |          .+
T Consensus       289 ~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~d  368 (885)
T KOG2023|consen  289 CKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSD  368 (885)
T ss_pred             cHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccccccc
Confidence             2    35566666665432          1                                    0          12


Q ss_pred             HHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc--hhhhhhhHHHHHHhcCCCC
Q 006898          177 PMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKS  254 (626)
Q Consensus       177 ~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~d~~  254 (626)
                      |..|+-.+.+|.-++..++. ...+.++|.+.+.+.+++|.+|++++-+++++++++-.  -.+.+.++|++..+++|+.
T Consensus       369 WNLRkCSAAaLDVLanvf~~-elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKk  447 (885)
T KOG2023|consen  369 WNLRKCSAAALDVLANVFGD-ELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKK  447 (885)
T ss_pred             ccHhhccHHHHHHHHHhhHH-HHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCc
Confidence            88999999999999988876 55688999999999999999999999999999998765  4567789999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCccccchHHHHH---HhcCCChHHHHHHHHHhHHHHHHhhChHHH--HHhhHHHHHHhcc
Q 006898          255 WRVRYMVANQLYELCEAVGPEPTRMDLVPAYV---RLLRDNEAEVRIAAAGKVTKFCRILNPELA--IQHILPCVKELSS  329 (626)
Q Consensus       255 ~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~---~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~l~~  329 (626)
                      +-||...+.+++..+...-.+...+.+.|.+.   ..+-|.+..|+++|+.++..+-+..+.+.+  .+.++..+....+
T Consensus       448 plVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~  527 (885)
T KOG2023|consen  448 PLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFG  527 (885)
T ss_pred             cceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence            99999999999999987765554445555554   445588999999999999999887666532  2222222221111


Q ss_pred             ---CCCHHHHHHHHHHHHhhhhhhc----HHHHHHhHHHHHHH---hhcCCCHHHHHHHHHhhHHHHhhhchhhH--Hhh
Q 006898          330 ---DSSQHVRSALASVIMGMAPLLG----KDATIEQLLPIFLS---LLKDEFPDVRLNIISKLDQVNQVIGIDLL--SQS  397 (626)
Q Consensus       330 ---d~~~~vr~~~~~~l~~l~~~~~----~~~~~~~l~~~l~~---~l~d~~~~vr~~a~~~L~~~~~~~~~~~~--~~~  397 (626)
                         .+|-.   ....+++.++...|    +..+.+.++|.+..   .++|++.++- -.+++++.+...+|....  .+.
T Consensus       528 kYQ~KNLl---ILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLf-PLLEClSsia~AL~~gF~P~~~~  603 (885)
T KOG2023|consen  528 KYQKKNLL---ILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLF-PLLECLSSIASALGVGFLPYAQP  603 (885)
T ss_pred             HHhhccee---hHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHH-HHHHHHHHHHHHHhccccccCHH
Confidence               12211   34456666665544    45567777877754   5678776652 345566666655543221  011


Q ss_pred             -------HHH----HHHHHhcC-----CChHHHHHHHHHHHHHHHhhChhh----HHHHHHHHHHHHhcCCchHHHHHHH
Q 006898          398 -------LLP----AIVELAED-----RHWRVRLAIIEYIPLLASQLGVGF----FDDKLGALCMQWLQDKVYSIRDAAA  457 (626)
Q Consensus       398 -------i~~----~l~~~~~~-----~~~~~r~~~~~~l~~l~~~~~~~~----~~~~l~p~l~~~l~d~~~~VR~~a~  457 (626)
                             ++.    .+.+.-++     ++...-..++..++.+++++|...    ..+.+..+++.++.|..++||+.+.
T Consensus       604 Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~F  683 (885)
T KOG2023|consen  604 VYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAF  683 (885)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHH
Confidence                   111    11111122     233445668889999999887542    3356899999999999999999999


Q ss_pred             HHHHHHHHHhChHH--HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChH--HhhhcHHHHHhhhCC--CCCchHH
Q 006898          458 NNLKRLAEEFGPEW--AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASK--DRVPNIK  531 (626)
Q Consensus       458 ~~l~~l~~~~~~~~--~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~--~~~~~~l~~l~~~l~--d~~~~vR  531 (626)
                      ..+|.++....+..  ....++|.+...++-.+-.+..+|++++|.++.+++.+  .+...++..|...++  .....+-
T Consensus       684 ALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tll  763 (885)
T KOG2023|consen  684 ALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLL  763 (885)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHH
Confidence            99999998764331  23556666665566667789999999999999988876  234444444444443  3345688


Q ss_pred             HHHHHHHHHHHhhhcc---chhhhcccchHHhhhccCCCccccc
Q 006898          532 FNVAKVLQSLIPIVDQ---SVSTFSVSPFSFMLYLNVNNFNVGF  572 (626)
Q Consensus       532 ~~a~~~l~~i~~~~~~---~~~~~~i~~~l~~~l~~d~d~~vr~  572 (626)
                      .+++-++|++....++   +.....+.|... .+.+-.|.+-+.
T Consensus       764 ENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~-sl~~i~DneEK~  806 (885)
T KOG2023|consen  764 ENTAITIGRLGYICPEEVAPHLDSFMRPWCT-SLRNIDDNEEKE  806 (885)
T ss_pred             HhhhhhhhhhhccCHHhcchhHHHHHHHHHH-HhcccccchhHH
Confidence            8899999998766544   233345566666 666555555555

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=7.9e-22  Score=194.40  Aligned_cols=555  Identities=16%  Similarity=0.196  Sum_probs=401.9

Q ss_pred             HHHHHHHhcCccHH-HHHHHHhhHHHHHHhhChHhhhhhh----cccccc--ccCCchHHHHHHHHHHhccccccC----
Q 006898           11 IAVLIDELKNDDIQ-LRLNSIRRLSTIARALGEERTRKEL----IPFLSE--NNDDDDEVLLAMAEELGVFIPYVG----   79 (626)
Q Consensus        11 i~~l~~~l~s~d~~-~r~~a~~~l~~i~~~~~~~~~~~~l----~~~l~~--~~~~~~~vr~~~~~~l~~~~~~~~----   79 (626)
                      |..|+....++.+. +|..++.+++.+.....|+...+.-    ...+..  -.+++..||.++..+|.+-....+    
T Consensus       131 i~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~  210 (859)
T KOG1241|consen  131 IVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFN  210 (859)
T ss_pred             HHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhc
Confidence            34455555555555 8999999999999988887533322    222222  245677899999999876444322    


Q ss_pred             CcchhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChh---hHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcC--
Q 006898           80 GVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES---DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYP--  154 (626)
Q Consensus        80 ~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~---~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~--  154 (626)
                      .+...+.++.......+.++.+||.+|..||.+|....-..   -..+-+.++......++++.+...+.+..+.++.  
T Consensus       211 ~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEE  290 (859)
T KOG1241|consen  211 NEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEE  290 (859)
T ss_pred             cHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence            23456778887777788899999999999999998865431   1122244555556677788888877777665443  


Q ss_pred             -------------CCCh-------HHHHHHHHHHHHhcC-------CCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHH
Q 006898          155 -------------SAPD-------ILKTELRSIYTQLCQ-------DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIF  207 (626)
Q Consensus       155 -------------~~~~-------~~~~~l~~~l~~l~~-------d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l  207 (626)
                                   ..++       ...+.++|.+++++.       |.+|..-++|..+|.-+++..++ .+.++++|++
T Consensus       291 iD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D-~Iv~~Vl~Fi  369 (859)
T KOG1241|consen  291 IDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGD-DIVPHVLPFI  369 (859)
T ss_pred             HHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcc-cchhhhHHHH
Confidence                         1111       123467777777652       35699999999999999998876 4557899999


Q ss_pred             HHhhcCCchhHHHHHHHHHHHhhcccCc---hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcc----ccc
Q 006898          208 EDLTQDDQDSVRLLAVEGCAALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT----RMD  280 (626)
Q Consensus       208 ~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~  280 (626)
                      .+-+++++|.-|.+++-+++.+.+.-.+   ..+.+..+|.+..+..|++-.||.+++.+||.++..++....    ...
T Consensus       370 ee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~  449 (859)
T KOG1241|consen  370 EENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQS  449 (859)
T ss_pred             HHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhH
Confidence            9999999999999999999999877655   345677888999999999999999999999999998764432    335


Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChH-----------HHHHhhHHHHHHhcc--C-CCHHHHHHHHHHHHhh
Q 006898          281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-----------LAIQHILPCVKELSS--D-SSQHVRSALASVIMGM  346 (626)
Q Consensus       281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-----------~~~~~l~~~l~~l~~--d-~~~~vr~~~~~~l~~l  346 (626)
                      .++.+.+.++| +|.+...+..++..+++.....           .+.+.++..|.+..+  | .....|.++.++|+.+
T Consensus       450 ~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmEl  528 (859)
T KOG1241|consen  450 KLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMEL  528 (859)
T ss_pred             HHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHH
Confidence            66777777777 4789899999988888644211           122344444443332  2 3458999999999999


Q ss_pred             hhhhcHHHHH--HhHHHHHHH---------hhc--C--CCHHHHHHHHHhhHHHHhhhchhh--HHhhHHHHHHHHhcC-
Q 006898          347 APLLGKDATI--EQLLPIFLS---------LLK--D--EFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAED-  408 (626)
Q Consensus       347 ~~~~~~~~~~--~~l~~~l~~---------~l~--d--~~~~vr~~a~~~L~~~~~~~~~~~--~~~~i~~~l~~~~~~-  408 (626)
                      .+..+++.+.  ..+.+.+..         .+.  |  .-.++....+..|..+...++++.  ..+.++..+.++++. 
T Consensus       529 Ik~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~  608 (859)
T KOG1241|consen  529 IKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESK  608 (859)
T ss_pred             HHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCC
Confidence            9887665431  122222222         222  1  124566666777888877777643  346788888888887 


Q ss_pred             CChHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhh
Q 006898          409 RHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWL-QDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEM  483 (626)
Q Consensus       409 ~~~~~r~~~~~~l~~l~~~~~~~~--~~~~l~p~l~~~l-~d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~  483 (626)
                      ++-.+...++-+++.++..+|+.+  +.+.+.|.+...+ +-.+..|..+|+...|.++..++.+.  +.+.++..|.+.
T Consensus       609 ~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~  688 (859)
T KOG1241|consen  609 RSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQC  688 (859)
T ss_pred             ccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            566788899999999999999876  4478999998888 56678899999999999999998874  347888889998


Q ss_pred             hcCC--ChHHHHHHHHHHHHhccccChHH--hhhcHHHHHhhhC---CCC--------CchHHHHHHHHHHHHHhhhcc-
Q 006898          484 INNP--HYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINAS---KDR--------VPNIKFNVAKVLQSLIPIVDQ-  547 (626)
Q Consensus       484 l~~~--~~~vR~~a~~~l~~i~~~~~~~~--~~~~~l~~l~~~l---~d~--------~~~vR~~a~~~l~~i~~~~~~-  547 (626)
                      +.++  ...++-..+.++|.|+-.+|..+  +.+.++|.+....   .|+        ..++|.+++++...+...++. 
T Consensus       689 Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~  768 (859)
T KOG1241|consen  689 LSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTH  768 (859)
T ss_pred             ccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            8887  46689999999999998888764  6788888888765   233        235899999999999888874 


Q ss_pred             ------chhhhcccchHHhhhccCCCc
Q 006898          548 ------SVSTFSVSPFSFMLYLNVNNF  568 (626)
Q Consensus       548 ------~~~~~~i~~~l~~~l~~d~d~  568 (626)
                            .++.+.|+..+. +...|++.
T Consensus       769 ~~~~~~~p~v~~I~sfi~-~I~~e~~~  794 (859)
T KOG1241|consen  769 ADVMLVQPYVPHIISFID-RIAAEPDV  794 (859)
T ss_pred             cchhhhhcchHHHHHHHH-HHhcCccc
Confidence                  255566777777 76666654

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=99.94  E-value=4.7e-23  Score=206.78  Aligned_cols=559  Identities=15%  Similarity=0.201  Sum_probs=368.2

Q ss_pred             ccHHHHHHHhcCccHHHHHHHHhhHHHHHH----hhChHhhhhhhccccccccCCchHHHHHHHHHHhccccccCCcchh
Q 006898            9 YPIAVLIDELKNDDIQLRLNSIRRLSTIAR----ALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHA   84 (626)
Q Consensus         9 ~~i~~l~~~l~s~d~~~r~~a~~~l~~i~~----~~~~~~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~   84 (626)
                      +.| -|+++|.|.|.+.|++|...|.+-..    .+..+...+.+--+|+.+.|.++||++.|.+|+|.++..++.....
T Consensus         6 ~~i-~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le   84 (1233)
T KOG1824|consen    6 VGI-NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLE   84 (1233)
T ss_pred             HHH-HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHH
Confidence            344 78999999999999999998886533    3444444444444444478999999999999999998877643332


Q ss_pred             hcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcCh-------hhHHHhHHHHHHHHhcC--CccchhHHHhhHhHHhcCC
Q 006898           85 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE-------SDLVDWYIPLVKRLAAG--EWFTARVSACGLFHIAYPS  155 (626)
Q Consensus        85 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~-------~~~~~~l~~~l~~l~~~--~~~~~r~~a~~~l~~~~~~  155 (626)
                      ..+-.+..++.+ ..++.|..+.-+|.....+++|       ..+...+.|.+......  +...++..++.+++.+..+
T Consensus        85 ~~ve~L~~~~~s-~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr  163 (1233)
T KOG1824|consen   85 TIVENLCSNMLS-GKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSR  163 (1233)
T ss_pred             HHHHHHhhhhcc-chhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh
Confidence            323333444443 3445688888888888777775       11222344444333221  2233555555555555444


Q ss_pred             CCh---HHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhC-------------------------------------
Q 006898          156 APD---ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVE-------------------------------------  195 (626)
Q Consensus       156 ~~~---~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~-------------------------------------  195 (626)
                      ++.   +....++..+..-+..+...||+.++.+++.++...+                                     
T Consensus       164 ~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~  243 (1233)
T KOG1824|consen  164 FGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQ  243 (1233)
T ss_pred             hcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHH
Confidence            443   2333444444444444445566666666655554433                                     


Q ss_pred             --c--cchhhhHHHHHHHhh---cCCchhHHHHHHHHHHHhhcccCch--hhhhhhHHHHHHhc----------------
Q 006898          196 --P--AHLKTDIMSIFEDLT---QDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFS----------------  250 (626)
Q Consensus       196 --~--~~~~~~ll~~l~~l~---~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~----------------  250 (626)
                        .  ....+.++|.+.+.+   +.++++.|+.++++++.+...++.+  .+++.++..+...+                
T Consensus       244 ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~  323 (1233)
T KOG1824|consen  244 AGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDA  323 (1233)
T ss_pred             hcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhh
Confidence              2  123455778877777   6667899999999999999888763  24444444432211                


Q ss_pred             ------------------CCCCHHHHHHHHHHHHHHHHHhCCC--ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHh
Q 006898          251 ------------------QDKSWRVRYMVANQLYELCEAVGPE--PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI  310 (626)
Q Consensus       251 ------------------~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~  310 (626)
                                        +|.+|.||+++++++..+...-.+-  .+...+-|.++..+++.+.+|+...+.++-.+...
T Consensus       324 ~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~q  403 (1233)
T KOG1824|consen  324 MFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQ  403 (1233)
T ss_pred             hhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHc
Confidence                              1237999999999998876542211  12345677778888999999999988888777664


Q ss_pred             hCh----------------H---HHH----HhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcH--HHHHHhHHHHHHH
Q 006898          311 LNP----------------E---LAI----QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLS  365 (626)
Q Consensus       311 ~~~----------------~---~~~----~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~  365 (626)
                      .++                .   .+.    ..++..+...+.+++...|..+...+..+....+.  ....+.++|.+..
T Consensus       404 t~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~  483 (1233)
T KOG1824|consen  404 TRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIY  483 (1233)
T ss_pred             CCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhh
Confidence            431                0   111    12333334444556666777777777777765543  2345678999999


Q ss_pred             hhcCCC--HHHHHHHHHhhHHHHhhhchhhHH---hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC---------hh
Q 006898          366 LLKDEF--PDVRLNIISKLDQVNQVIGIDLLS---QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---------VG  431 (626)
Q Consensus       366 ~l~d~~--~~vr~~a~~~L~~~~~~~~~~~~~---~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~---------~~  431 (626)
                      .|+|.+  ...+..++..+.......+++.+.   ..+.|.+.....++-+.+-..++.....+.+...         ..
T Consensus       484 ~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~  563 (1233)
T KOG1824|consen  484 SLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDAS  563 (1233)
T ss_pred             hcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCC
Confidence            999865  456677777776666666666553   3455666667789999999999999888887542         22


Q ss_pred             hHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcC--CChHHHHHHHHHHHHhccc--
Q 006898          432 FFDDKLGALCMQWL--QDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN--PHYLYRMTILRAISLLAPV--  505 (626)
Q Consensus       432 ~~~~~l~p~l~~~l--~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~--~~~~vR~~a~~~l~~i~~~--  505 (626)
                      .+...+....++.+  +|.+.+||++|..|+|.++..+|+. . ..-+|.....+-+  .|.-+|..|+.++..++..  
T Consensus       564 ~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~-l-~~eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia~S~l  641 (1233)
T KOG1824|consen  564 PYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDF-L-GNELPRTLPILLERLGNEITRLTAVKALTLIAMSPL  641 (1233)
T ss_pred             hhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhh-h-hhhhHHHHHHHHHHHhchhHHHHHHHHHHHHHhccc
Confidence            33344555545544  6888999999999999999999853 2 2233333332222  4677999999999988752  


Q ss_pred             -cChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc---hhhhcccchHHhhhccCCCccccc
Q 006898          506 -MGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---VSTFSVSPFSFMLYLNVNNFNVGF  572 (626)
Q Consensus       506 -~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~~l~~d~d~~vr~  572 (626)
                       ++.......++|.+...+.-.....|.....++..+...++..   ...+.++..+. .+..+.|..+..
T Consensus       642 ~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~-~Lisesdlhvt~  711 (1233)
T KOG1824|consen  642 DIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELP-PLISESDLHVTQ  711 (1233)
T ss_pred             eeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhh-hhhhHHHHHHHH
Confidence             3334567789999999998888999999999999999888653   33455666666 788898988777

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=99.93  E-value=6e-22  Score=193.92  Aligned_cols=537  Identities=17%  Similarity=0.199  Sum_probs=383.2

Q ss_pred             cCccHHHHHHHHhhHHHHHHhhChHhhhhhhccccccccCCchHHHHHHHHHHhccccccCCcchhhcchHHHhhhhcCc
Q 006898           19 KNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVE   98 (626)
Q Consensus        19 ~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~   98 (626)
                      -.+|...|.+....+.+++...|-.+....+.|-+.   +.++-||+..+.+.+.++..+|    .+.++|+|..++.+.
T Consensus       451 ided~yar~egreIisnLakaaGla~mistmrpDid---n~deYVRnttarafavvasalg----ip~llpfLkavc~Sk  523 (1172)
T KOG0213|consen  451 IDEDYYARVEGREIISNLAKAAGLATMISTMRPDID---NKDEYVRNTTARAFAVVASALG----IPALLPFLKAVCGSK  523 (1172)
T ss_pred             ecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcc---cccHHHHHHHHHHHHHHHHHhC----cHHHHHHHHHHhccc
Confidence            456777888887788888777776655555555443   4577889888888888877665    357888888888776


Q ss_pred             -chHHHHHHHHHHHHHHhhcChhhHH--HhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCCh---HHHHHHHHHHHHhc
Q 006898           99 -ETCVRDKAVESLCRIGSQMRESDLV--DWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD---ILKTELRSIYTQLC  172 (626)
Q Consensus        99 -~~~vR~~a~~~l~~i~~~~~~~~~~--~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~---~~~~~l~~~l~~l~  172 (626)
                       +++-|+..+++..+|+..++-..+.  .-++..+...+.|++..+|..++..++.+++..++   +..+.++..|.+..
T Consensus       524 kSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgi  603 (1172)
T KOG0213|consen  524 KSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGI  603 (1172)
T ss_pred             cchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence             7888888888888888777653321  23566677778888888888888888888777665   45666777776665


Q ss_pred             CCCCHHHHHHHHHhHHHHHHhhCcc---chhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCch--hhhhhhHHHH-
Q 006898          173 QDDMPMVRRSAASNLGKFAATVEPA---HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVI-  246 (626)
Q Consensus       173 ~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l-  246 (626)
                      .......-.+.+++++.++....++   .+..+++-.+.+-.+.++++.++..++.+...+...|-+  -....++|.+ 
T Consensus       604 r~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff  683 (1172)
T KOG0213|consen  604 RQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFF  683 (1172)
T ss_pred             HHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHH
Confidence            5554455555666666665544332   233344555555566777777777777777666554431  1112222221 


Q ss_pred             --------------------------------------HHhcCCCCHHHHHHHHHHHHHHHHHhCCCcccc----chHHH
Q 006898          247 --------------------------------------VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM----DLVPA  284 (626)
Q Consensus       247 --------------------------------------~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~----~l~~~  284 (626)
                                                            ..-+.|.++.-|...+.++..+...+|.....+    .++..
T Consensus       684 ~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidg  763 (1172)
T KOG0213|consen  684 FSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDG  763 (1172)
T ss_pred             hhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHH
Confidence                                                  122345566677777777777776666543322    33444


Q ss_pred             HHHhcCCChHHHHHHHHHhHHHHHHhhCh--HHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhh---cHHHHHHhH
Q 006898          285 YVRLLRDNEAEVRIAAAGKVTKFCRILNP--ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL---GKDATIEQL  359 (626)
Q Consensus       285 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~---~~~~~~~~l  359 (626)
                      ++..+.++..+.. ..+..++.++..++.  ..+...+...+...++++++.||+.++..++.++..+   +++....++
T Consensus       764 il~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~l  842 (1172)
T KOG0213|consen  764 ILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHL  842 (1172)
T ss_pred             HHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHh
Confidence            4444433322221 234556666666655  3344556666677789999999999999999888654   555566677


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhH---HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHH
Q 006898          360 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK  436 (626)
Q Consensus       360 ~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~---~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~  436 (626)
                      --++...+..+.++|--..+.++..+.+.+|-...   .+.++|.+..++++.+..+....+..++.++..-....-...
T Consensus       843 GvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aRE  922 (1172)
T KOG0213|consen  843 GVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSARE  922 (1172)
T ss_pred             hHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHH
Confidence            77788889999999999999999999888865543   257899999999999999999999999999875332211122


Q ss_pred             HHHH---HHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhh
Q 006898          437 LGAL---CMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCS  513 (626)
Q Consensus       437 l~p~---l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~  513 (626)
                      .+-+   ++.+|...+.++|.+|..++|.+.+.+|+.    .++..|++.++-.+.+.|.+..-+++.+++.|++-    
T Consensus       923 WMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPq----dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF----  994 (1172)
T KOG0213|consen  923 WMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ----DVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF----  994 (1172)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH----HHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch----
Confidence            2333   445567778999999999999999999985    57888888888888899999999999999988874    


Q ss_pred             cHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc--hhhhcccchHHhhhccCCCccccc
Q 006898          514 RLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VSTFSVSPFSFMLYLNVNNFNVGF  572 (626)
Q Consensus       514 ~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~~l~~d~d~~vr~  572 (626)
                      .++|.|+.-..-++.+|+...++++.-+++..|+.  .+...+.|.|. -.+.|.|..-|.
T Consensus       995 tVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~Plle-DAlmDrD~vhRq 1054 (1172)
T KOG0213|consen  995 TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLE-DALMDRDLVHRQ 1054 (1172)
T ss_pred             hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHH-HhhccccHHHHH
Confidence            57888888888899999999999999999999874  56678999999 888899998888

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=99.93  E-value=9.9e-22  Score=192.43  Aligned_cols=537  Identities=16%  Similarity=0.143  Sum_probs=382.1

Q ss_pred             hcCccHHHHHHHHhhHHHHHHhhChHhhhhhhcccccc-ccCC-chHHHHHHHHHHhccccccCCc--chhhcchHHHhh
Q 006898           18 LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDD-DDEVLLAMAEELGVFIPYVGGV--EHAHVLLPPLET   93 (626)
Q Consensus        18 l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~-~~~vr~~~~~~l~~~~~~~~~~--~~~~~l~~~l~~   93 (626)
                      +.+.|+.+|....++.+.++.++|.    +.++|||.. +.+. +.+-|+...++..+++...|..  .+...++.++..
T Consensus       485 idn~deYVRnttarafavvasalgi----p~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~  560 (1172)
T KOG0213|consen  485 IDNKDEYVRNTTARAFAVVASALGI----PALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEH  560 (1172)
T ss_pred             cccccHHHHHHHHHHHHHHHHHhCc----HHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHH
Confidence            4578999999999999999999984    688999988 6654 7788888888888877766643  355667788888


Q ss_pred             hhcCcchHHHHHHHHHHHHHHhhcChhhHHH---hHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChH----HHHHHHH
Q 006898           94 LCTVEETCVRDKAVESLCRIGSQMRESDLVD---WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRS  166 (626)
Q Consensus        94 l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~---~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~----~~~~l~~  166 (626)
                      ++.|+...||..++.++..+++...|..++.   .+-|+.... ...-...-.+....++.+++....+    +..+++-
T Consensus       561 gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgi-r~hrgk~laafLkAigyliplmd~eya~yyTrevml  639 (1172)
T KOG0213|consen  561 GLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGI-RQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVML  639 (1172)
T ss_pred             hhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH-HHccChHHHHHHHHHhhccccccHHHHHHhHHHHHH
Confidence            9999999999999999999999887743332   233333222 2111122223334455555544433    2344555


Q ss_pred             HHHHhcCCCCHHHHHHHHHhHHHHHHhhCccc--hhhhH---------------------------------------HH
Q 006898          167 IYTQLCQDDMPMVRRSAASNLGKFAATVEPAH--LKTDI---------------------------------------MS  205 (626)
Q Consensus       167 ~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l---------------------------------------l~  205 (626)
                      .+..-.+.++.++++-.++.+.+.+...|-+.  ...++                                       +.
T Consensus       640 il~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~  719 (1172)
T KOG0213|consen  640 ILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVS  719 (1172)
T ss_pred             HHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHH
Confidence            55555566666666666666666665544210  01111                                       11


Q ss_pred             HHHHhhcCCchhHHHHHHHHHHHhhcccC------------------------------------------c--hhhhhh
Q 006898          206 IFEDLTQDDQDSVRLLAVEGCAALGKLLE------------------------------------------P--QDCVAH  241 (626)
Q Consensus       206 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~------------------------------------------~--~~~~~~  241 (626)
                      .+..-+.|+.+..|....++...+...+|                                          .  ..+.+.
T Consensus       720 R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpq  799 (1172)
T KOG0213|consen  720 RVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQ  799 (1172)
T ss_pred             HHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHH
Confidence            12222344555555555555444433332                                          2  233444


Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHH--
Q 006898          242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA--  316 (626)
Q Consensus       242 i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--  316 (626)
                      +...+...++++++.||..++..++.++..+.   ++....++--++.+.+..+.|+|-...+.++..+...+|....  
T Consensus       800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~p  879 (1172)
T KOG0213|consen  800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTP  879 (1172)
T ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCC
Confidence            55556667889999999999999998887653   3333445666677888888899999888888888887764422  


Q ss_pred             -HHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHH---HHhhcCCCHHHHHHHHHhhHHHHhhhchh
Q 006898          317 -IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIF---LSLLKDEFPDVRLNIISKLDQVNQVIGID  392 (626)
Q Consensus       317 -~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l---~~~l~d~~~~vr~~a~~~L~~~~~~~~~~  392 (626)
                       .+.++|.+...+++.+..|....+..++.++..-+........+.++   +.+|+..+.++|.+|..+++.+.+.+|+.
T Consensus       880 Pi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPq  959 (1172)
T KOG0213|consen  880 PIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ  959 (1172)
T ss_pred             ChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH
Confidence             36678888888899999999999999999886533222223344443   44556778899999999999999999985


Q ss_pred             hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChH--
Q 006898          393 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE--  470 (626)
Q Consensus       393 ~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~--  470 (626)
                          .++..|++-++....+.|.+..-+++.+++.+++-    .++|.++.--..++.+|++...++++.+++..|.-  
T Consensus       960 ----dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF----tVLPalmneYrtPe~nVQnGVLkalsf~Feyigemsk 1031 (1172)
T KOG0213|consen  960 ----DVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF----TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSK 1031 (1172)
T ss_pred             ----HHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch----hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhh
Confidence                46777777777777778888888888888888764    36888888888899999999999999999987753  


Q ss_pred             HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccc---cChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhcc
Q 006898          471 WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPV---MGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  547 (626)
Q Consensus       471 ~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~---~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~  547 (626)
                      ...-.+.|.+...+.|.+...|+.+..++.+++-.   .+.+...-+++..+.-..-++.|.|.+....++..+...+|.
T Consensus      1032 dYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~ 1111 (1172)
T KOG0213|consen 1032 DYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGP 1111 (1172)
T ss_pred             hHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhch
Confidence            23356789999999999999999999999998754   344555666777777777799999999999999999999999


Q ss_pred             chhhhcccchHHhhhccCCCccccc
Q 006898          548 SVSTFSVSPFSFMLYLNVNNFNVGF  572 (626)
Q Consensus       548 ~~~~~~i~~~l~~~l~~d~d~~vr~  572 (626)
                      ..+.++++..|.     .+...||.
T Consensus      1112 ~~~~~Y~~QGLF-----HParkVR~ 1131 (1172)
T KOG0213|consen 1112 QAMLKYCLQGLF-----HPARKVRK 1131 (1172)
T ss_pred             HHHHHHHHHhcc-----CcHHHHHH
Confidence            877777776666     55566666

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=9.2e-21  Score=186.99  Aligned_cols=591  Identities=14%  Similarity=0.161  Sum_probs=402.4

Q ss_pred             HHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhcccccc-ccCCchHHHHHHHHHHhccccccCCcchhhcchHHHhhh
Q 006898           16 DELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETL   94 (626)
Q Consensus        16 ~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l   94 (626)
                      +.|.+.|++....-.+.+-.+     +...++++-..+.. +..+.|.+...++++++.++..--....|+.++..+..-
T Consensus        63 N~L~akd~~~k~~~~qRWl~l-----~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~n  137 (859)
T KOG1241|consen   63 NSLTAKDPERKQQYQQRWLQL-----PAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSN  137 (859)
T ss_pred             hhhccCCHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHh
Confidence            344444554444444444322     22344555555555 456788888899999988876433345788888877776


Q ss_pred             hcCcch-HHHHHHHHHHHHHHhhcChhhHHHh---HHHHHHHHh--cCCccchhHHHhhHhHHhcC----CCC-hHHHHH
Q 006898           95 CTVEET-CVRDKAVESLCRIGSQMRESDLVDW---YIPLVKRLA--AGEWFTARVSACGLFHIAYP----SAP-DILKTE  163 (626)
Q Consensus        95 ~~~~~~-~vR~~a~~~l~~i~~~~~~~~~~~~---l~~~l~~l~--~~~~~~~r~~a~~~l~~~~~----~~~-~~~~~~  163 (626)
                      ..++.+ .+|+.++++++.+++.+.|+.+.+.   ++-.+....  ...+..+|.+|..++.....    ++. +..++.
T Consensus       138 v~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~  217 (859)
T KOG1241|consen  138 VGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNY  217 (859)
T ss_pred             cccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhce
Confidence            666655 4999999999999999999865544   333333322  23467789888887765433    222 345667


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc---cchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhccc-------
Q 006898          164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL-------  233 (626)
Q Consensus       164 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~-------  233 (626)
                      ++....+..+.++.+||.++..+|.++....-.   ....+.++++-...+.+++++|...+++.+..+++.-       
T Consensus       218 iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~  297 (859)
T KOG1241|consen  218 IMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEY  297 (859)
T ss_pred             eeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            778888888889999999999999998875432   1223345566666678888999999999988766431       


Q ss_pred             Cc--h------------hhhhhhHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCC
Q 006898          234 EP--Q------------DCVAHILPVIVNFS-------QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDN  292 (626)
Q Consensus       234 ~~--~------------~~~~~i~~~l~~~~-------~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~  292 (626)
                      ++  +            .-.+.++|.+..++       .|.+|..-.++..||.-++...|.+.. +.++|.+.+-++.+
T Consensus       298 ~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv-~~Vl~Fiee~i~~p  376 (859)
T KOG1241|consen  298 GEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIV-PHVLPFIEENIQNP  376 (859)
T ss_pred             HHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccch-hhhHHHHHHhcCCc
Confidence            10  0            01235677776554       235799999999999999999997774 58889998899999


Q ss_pred             hHHHHHHHHHhHHHHHHhhChH---HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhc----HHHHHHhHHHHHHH
Q 006898          293 EAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG----KDATIEQLLPIFLS  365 (626)
Q Consensus       293 ~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~----~~~~~~~l~~~l~~  365 (626)
                      +|.-|.+++.+++.+.+.-...   .+....+|.+..+..|++-.||.++...++.++....    ........++.+..
T Consensus       377 dwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~  456 (859)
T KOG1241|consen  377 DWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLE  456 (859)
T ss_pred             chhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHH
Confidence            9999999999999988754433   2345677888888899999999999999999987654    33445567777888


Q ss_pred             hhcCCCHHHHHHHHHhhHHHHhhhc---hh--------hHHhhHHHHHHHHhc--C-CChHHHHHHHHHHHHHHHhhChh
Q 006898          366 LLKDEFPDVRLNIISKLDQVNQVIG---ID--------LLSQSLLPAIVELAE--D-RHWRVRLAIIEYIPLLASQLGVG  431 (626)
Q Consensus       366 ~l~d~~~~vr~~a~~~L~~~~~~~~---~~--------~~~~~i~~~l~~~~~--~-~~~~~r~~~~~~l~~l~~~~~~~  431 (626)
                      .++|. |.|-.++++++..+.+...   .+        .+.+.|+..|.+...  | .....|.++.+++..+.+.....
T Consensus       457 gL~De-Prva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~  535 (859)
T KOG1241|consen  457 GLNDE-PRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDD  535 (859)
T ss_pred             HhhhC-chHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHH
Confidence            88876 8888889998888875431   11        123455555555543  2 34689999999999999877655


Q ss_pred             hHH--HHHHHHHHH----Hhc---------CCchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhhcC-CChHHHH
Q 006898          432 FFD--DKLGALCMQ----WLQ---------DKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINN-PHYLYRM  493 (626)
Q Consensus       432 ~~~--~~l~p~l~~----~l~---------d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~~-~~~~vR~  493 (626)
                      .+.  ..+.+.++.    .++         +...+++..-+.+|+.+...++.+.  ..+.++..+..+++. .+..+-.
T Consensus       536 vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e  615 (859)
T KOG1241|consen  536 VYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHE  615 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchH
Confidence            432  222222222    221         1223566777888888888887752  347788888888887 4566788


Q ss_pred             HHHHHHHHhccccChHH--hhhcHHHHHhhhC-CCCCchHHHHHHHHHHHHHhhhccc--hhhhcccchHHhhhccCC--
Q 006898          494 TILRAISLLAPVMGSEI--TCSRLLPVVINAS-KDRVPNIKFNVAKVLQSLIPIVDQS--VSTFSVSPFSFMLYLNVN--  566 (626)
Q Consensus       494 ~a~~~l~~i~~~~~~~~--~~~~~l~~l~~~l-~d~~~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~~l~~d~--  566 (626)
                      .+..+++.++..+|..+  +.+.+.|+|...+ +-.+..|-..|....|.+...++.+  ++.+.+...|. ..+..+  
T Consensus       616 ~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lv-q~Lss~~~  694 (859)
T KOG1241|consen  616 EAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLV-QCLSSPNL  694 (859)
T ss_pred             HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-HHccCccc
Confidence            89999999999998865  6788999999988 5556678888999999999998875  45556666555 444333  


Q ss_pred             Cccccc----ccccCchhHHHHH------H---HHHHHH---HhhcCCcccccchhhHHHHHHh
Q 006898          567 NFNVGF----IFAAFPLVLFSCL------A---LNYCHR---WWRKQSVPVWLSSLRIQMLMSV  614 (626)
Q Consensus       567 d~~vr~----~~~~~~~~~~a~~------a---l~~~~~---~~~~~~~~~~~~~~~~~~~~~~  614 (626)
                      +++|+-    +++.+.+.+-+..      .   |.+..+   -..+.+.-.|.+.+|--||...
T Consensus       695 hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay  758 (859)
T KOG1241|consen  695 HRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAY  758 (859)
T ss_pred             cccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHH
Confidence            344444    4444443222111      0   111110   1123455678888888777654

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.91  E-value=1.4e-19  Score=202.64  Aligned_cols=562  Identities=13%  Similarity=0.085  Sum_probs=390.1

Q ss_pred             ccHHHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhh------hhhhcccccc-ccCC---chHHHHHHHHHHhcccccc
Q 006898            9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERT------RKELIPFLSE-NNDD---DDEVLLAMAEELGVFIPYV   78 (626)
Q Consensus         9 ~~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~------~~~l~~~l~~-~~~~---~~~vr~~~~~~l~~~~~~~   78 (626)
                      ..|+.|++-|++++...|..|..+|-.++..-..+..      ..-.+|.|.. +.+.   +..++..+..+|.++...-
T Consensus        99 GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~  178 (2102)
T PLN03200         99 GCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGST  178 (2102)
T ss_pred             CChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCc
Confidence            4677889999999999999999999999653210111      1334555555 3332   3346667778888887643


Q ss_pred             CCcc---hhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcCh---hhHHHhHHHHHHHHhcC-CccchhHHHhhHhHH
Q 006898           79 GGVE---HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE---SDLVDWYIPLVKRLAAG-EWFTARVSACGLFHI  151 (626)
Q Consensus        79 ~~~~---~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~---~~~~~~l~~~l~~l~~~-~~~~~r~~a~~~l~~  151 (626)
                      .+..   .....+|.+-.+++++++.++..|+.++..++...+.   .......+|.+.+++.+ ++..+|..|+.++..
T Consensus       179 en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~n  258 (2102)
T PLN03200        179 DGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEA  258 (2102)
T ss_pred             cchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHH
Confidence            3211   1244778888888888999999999988888765432   22334577888888865 456889999999999


Q ss_pred             hcCCCChH----HHHHHHHHHHHhcCCCC---------HHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhh-------
Q 006898          152 AYPSAPDI----LKTELRSIYTQLCQDDM---------PMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT-------  211 (626)
Q Consensus       152 ~~~~~~~~----~~~~l~~~l~~l~~d~~---------~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~-------  211 (626)
                      ++.+.++.    .....++.|..++..++         ...++.+..+|++++....      .+++.+.+.+       
T Consensus       259 LAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~------~ll~~L~~ll~s~rd~~  332 (2102)
T PLN03200        259 LSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMS------ALILYLGELSESPRSPA  332 (2102)
T ss_pred             HhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCch------hhHHHHHHhhcccchHH
Confidence            88764331    11233456666655433         4468899999999887431      2222222222       


Q ss_pred             ----------------cCCchhHHH----HHHHHHHHhhcccCchhh----------------------hhhhHHHHHHh
Q 006898          212 ----------------QDDQDSVRL----LAVEGCAALGKLLEPQDC----------------------VAHILPVIVNF  249 (626)
Q Consensus       212 ----------------~d~~~~vr~----~a~~~l~~l~~~~~~~~~----------------------~~~i~~~l~~~  249 (626)
                                      ++++...+.    .+...|..++++-.+...                      .....+.+..+
T Consensus       333 ~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~L  412 (2102)
T PLN03200        333 PIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGL  412 (2102)
T ss_pred             HHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhh
Confidence                            222111111    111222333322211110                      11233444555


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChH---HHHHhhHHH
Q 006898          250 SQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPC  323 (626)
Q Consensus       250 ~~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~  323 (626)
                      +...+..++..++.++..++..-.   ........+|.+.++++..++++|..++..++.++......   ......+|.
T Consensus       413 L~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~  492 (2102)
T PLN03200        413 ITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPP  492 (2102)
T ss_pred             hccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHH
Confidence            555667888888888877763311   00112347899999999888999999999999887633221   233567899


Q ss_pred             HHHhccCCCHHHHHHHHHHHHhhhhhhcH--HHH-HHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHH
Q 006898          324 VKELSSDSSQHVRSALASVIMGMAPLLGK--DAT-IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP  400 (626)
Q Consensus       324 l~~l~~d~~~~vr~~~~~~l~~l~~~~~~--~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~  400 (626)
                      +.+++.+++..+|..++.++++++..-..  ... ....+|.+..+|++.++.++..|+.+|..+...-..     ..++
T Consensus       493 LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~-----~~I~  567 (2102)
T PLN03200        493 LVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA-----ATIS  567 (2102)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch-----hHHH
Confidence            99999999999999999999999863111  112 224688899999999999999999999998765332     3457


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHHHhhChhhH------HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh---HH
Q 006898          401 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF------DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EW  471 (626)
Q Consensus       401 ~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~------~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~---~~  471 (626)
                      .+..++..++..++..+++.++.+.........      ...-+|.+..++++++..+++.|++++..++..-.+   ..
T Consensus       568 ~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~av  647 (2102)
T PLN03200        568 QLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESL  647 (2102)
T ss_pred             HHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHH
Confidence            778888888888888899999888765443321      134688999999999999999999999999864322   12


Q ss_pred             HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChH----HhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhcc
Q 006898          472 AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE----ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  547 (626)
Q Consensus       472 ~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~----~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~  547 (626)
                      .....+|.+..++.+.+..++..++++++++......+    ......+|.|..++++++..++..++.+|..+...-..
T Consensus       648 v~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~  727 (2102)
T PLN03200        648 ATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEV  727 (2102)
T ss_pred             HHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchH
Confidence            44678999999999999999999999999998643332    13456889999999999999999999999999887543


Q ss_pred             c--hhhhcccchHHhhhccCCCcccccccccCchhHHHHHHHHHHH
Q 006898          548 S--VSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCH  591 (626)
Q Consensus       548 ~--~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~  591 (626)
                      .  ......++.|. +++.+.+.++|.         .|..||..+.
T Consensus       728 ~~ei~~~~~I~~Lv-~lLr~G~~~~k~---------~Aa~AL~~L~  763 (2102)
T PLN03200        728 AAEALAEDIILPLT-RVLREGTLEGKR---------NAARALAQLL  763 (2102)
T ss_pred             HHHHHhcCcHHHHH-HHHHhCChHHHH---------HHHHHHHHHH
Confidence            2  23457789999 999999999999         9999987764

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.90  E-value=6.6e-20  Score=205.18  Aligned_cols=550  Identities=13%  Similarity=0.111  Sum_probs=391.3

Q ss_pred             ccHHHHHHHhcCccHHHHHHHHhhHHHHHHhhChHh---hhhhhcccccc-cc-CCchHHHHHHHHHHhccccccCCcch
Q 006898            9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEER---TRKELIPFLSE-NN-DDDDEVLLAMAEELGVFIPYVGGVEH   83 (626)
Q Consensus         9 ~~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~---~~~~l~~~l~~-~~-~~~~~vr~~~~~~l~~~~~~~~~~~~   83 (626)
                      ..++.|++.++++++..+..|...+..++...+...   ...-.+|.|.+ +. ++++.+|..++.+|++++..  +.++
T Consensus       189 GaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~--s~e~  266 (2102)
T PLN03200        189 GGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQ--SKEA  266 (2102)
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcC--CHHH
Confidence            467789999999999999999988877755422111   12344677766 33 35668999999999998762  2322


Q ss_pred             h-----hcchHHHhhhhcCcc---------hHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccch-hHHHhhH
Q 006898           84 A-----HVLLPPLETLCTVEE---------TCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTA-RVSACGL  148 (626)
Q Consensus        84 ~-----~~l~~~l~~l~~~~~---------~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~-r~~a~~~  148 (626)
                      .     ...+|.|..++..++         ...++.|+-+|+.++...      ..++|.+.+++++....+ -..++..
T Consensus       267 r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~------~~ll~~L~~ll~s~rd~~~~ada~gA  340 (2102)
T PLN03200        267 KQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM------SALILYLGELSESPRSPAPIADTLGA  340 (2102)
T ss_pred             HHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc------hhhHHHHHHhhcccchHHHHHHHHhh
Confidence            2     223444544444332         346888999999999875      346777777765542222 2234445


Q ss_pred             hHHhcCCCC---hHHH----HHHHHHHHHhcCCCCHH-HHHHHHHhHHHHHHhhCc--cchhhhHHHHHHHhhcCCchhH
Q 006898          149 FHIAYPSAP---DILK----TELRSIYTQLCQDDMPM-VRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSV  218 (626)
Q Consensus       149 l~~~~~~~~---~~~~----~~l~~~l~~l~~d~~~~-vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~l~~d~~~~v  218 (626)
                      ++.+...+.   +...    ..+.+.+.+++.++++. ++..+..+|..+..+..-  -....+.++.+..++...+.++
T Consensus       341 Layll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~ev  420 (2102)
T PLN03200        341 LAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADV  420 (2102)
T ss_pred             HHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHH
Confidence            544422221   1111    23457788888887665 477777777553322110  0112356778889999888999


Q ss_pred             HHHHHHHHHHhhcccCc---hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhcCCC
Q 006898          219 RLLAVEGCAALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDN  292 (626)
Q Consensus       219 r~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~  292 (626)
                      +..++.++..++..-..   .......+|.+..++.+.+..+|..++..++.++.....   .......+|.+.++++.+
T Consensus       421 Q~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~  500 (2102)
T PLN03200        421 QEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG  500 (2102)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC
Confidence            99999999998866433   122344789999999999999999999999988752211   122346899999999999


Q ss_pred             hHHHHHHHHHhHHHHHHhhC-hH-HH-HHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcC
Q 006898          293 EAEVRIAAAGKVTKFCRILN-PE-LA-IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD  369 (626)
Q Consensus       293 ~~~vr~~a~~~l~~l~~~~~-~~-~~-~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d  369 (626)
                      ++.+|+.|+.++..++..-. .. .+ ....+|.+.+++++.+++++..++.++..+...-..+     .++.+..++..
T Consensus       501 ~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~-----~I~~Lv~LLls  575 (2102)
T PLN03200        501 SQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA-----TISQLTALLLG  575 (2102)
T ss_pred             CHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh-----HHHHHHHHhcC
Confidence            99999999999999986311 11 12 2367888999999999999999999999987543222     23556677888


Q ss_pred             CCHHHHHHHHHhhHHHHhhhchhhH------HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh---hhHHHHHHHH
Q 006898          370 EFPDVRLNIISKLDQVNQVIGIDLL------SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGAL  440 (626)
Q Consensus       370 ~~~~vr~~a~~~L~~~~~~~~~~~~------~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~---~~~~~~l~p~  440 (626)
                      +++.++..+++.++.+......+..      ....+|.|.+++++++.+++..+..++..++.....   .......+|.
T Consensus       576 dd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpP  655 (2102)
T PLN03200        576 DLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINP  655 (2102)
T ss_pred             CChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHH
Confidence            8889999999999888664433321      135789999999999999999999999998864322   2334557888


Q ss_pred             HHHHhcCCchHHHHHHHHHHHHHHHHhChH----HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChH--Hhhhc
Q 006898          441 CMQWLQDKVYSIRDAAANNLKRLAEEFGPE----WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE--ITCSR  514 (626)
Q Consensus       441 l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~----~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~--~~~~~  514 (626)
                      +..++.+.+..+|..++++|+.+......+    ......+|.|.+++++++..++..++.++.+++..-+..  .....
T Consensus       656 LV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~  735 (2102)
T PLN03200        656 CIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAED  735 (2102)
T ss_pred             HHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcC
Confidence            999999999999999999999999743332    123567899999999999999999999999999865432  34467


Q ss_pred             HHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccch------hhhcccchHHhhhccCCCccccc
Q 006898          515 LLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV------STFSVSPFSFMLYLNVNNFNVGF  572 (626)
Q Consensus       515 ~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~------~~~~i~~~l~~~l~~d~d~~vr~  572 (626)
                      .+|.|..++++.++.+|.+|+++|..+......+.      .....+..|. .+++-.|.++..
T Consensus       736 ~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~-~~L~~~~~~~~~  798 (2102)
T PLN03200        736 IILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALV-DLLNSTDLDSSA  798 (2102)
T ss_pred             cHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHH-HHHhcCCcchhh
Confidence            78999999999999999999999999998765432      2234555556 577766666655

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=99.90  E-value=6.2e-20  Score=176.53  Aligned_cols=547  Identities=16%  Similarity=0.205  Sum_probs=367.5

Q ss_pred             cHHHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhcccccc--ccCCchHHHHHHHHHHhccccccCC--cchhh
Q 006898           10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE--NNDDDDEVLLAMAEELGVFIPYVGG--VEHAH   85 (626)
Q Consensus        10 ~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~--~~~~~~~vr~~~~~~l~~~~~~~~~--~~~~~   85 (626)
                      .+-.++-+.+++++..|.++++.|..-+.-.|+.-..+.++|.+..  +.|+.   |....+.+..+.-.++.  ..|.+
T Consensus       169 ~v~rllLkvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeDqe---rhl~vk~idr~Ly~lddl~~pyvh  245 (975)
T COG5181         169 DVYRLLLKVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELEDQE---RHLVVKLIDRLLYGLDDLKVPYVH  245 (975)
T ss_pred             hHHHHHhhcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhhhh---hHhHHHHHHHHHHhccccccccee
Confidence            4556778889999999999999999988889998888999999987  33332   33333333222111110  00111


Q ss_pred             ----------------------c-chHHHhh------------hhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHH
Q 006898           86 ----------------------V-LLPPLET------------LCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLV  130 (626)
Q Consensus        86 ----------------------~-l~~~l~~------------l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l  130 (626)
                                            + +..+...            =+.+.++-||+....+.+.+++.++-    +.++|++
T Consensus       246 kILvVv~pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~algv----~~llpfl  321 (975)
T COG5181         246 KILVVVGPLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADALGV----EELLPFL  321 (975)
T ss_pred             eEEEEeeccccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhhCc----HHHHHHH
Confidence                                  1 1111110            12445778888888888888888775    4588999


Q ss_pred             HHHhcCC-ccchhHHHhhHhHHhcCCCCh---HHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccch--hhhHH
Q 006898          131 KRLAAGE-WFTARVSACGLFHIAYPSAPD---ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHL--KTDIM  204 (626)
Q Consensus       131 ~~l~~~~-~~~~r~~a~~~l~~~~~~~~~---~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~--~~~ll  204 (626)
                      ..++.+. +|..|..+.++...++...+-   .+...++..+.+++.|.+..||..++.+++.+++..++-..  .+.++
T Consensus       322 ~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl  401 (975)
T COG5181         322 EALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVL  401 (975)
T ss_pred             HHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHH
Confidence            9998876 889999888777766655544   46678888999999999999999999999999999887322  23344


Q ss_pred             HHHHHhhcCCchhHHHHHHHHHHHhhcccCchh---hhhhhHHHHHHhc----------------------CCCCHHHHH
Q 006898          205 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD---CVAHILPVIVNFS----------------------QDKSWRVRY  259 (626)
Q Consensus       205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~i~~~l~~~~----------------------~d~~~~vR~  259 (626)
                      ..+.+..+..--.+-.+-+++.+.+.....++.   +....+.++.+.+                      .+..|..|.
T Consensus       402 ~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~  481 (975)
T COG5181         402 CPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRD  481 (975)
T ss_pred             HHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHH
Confidence            443333332222222333444443333333210   1111122222212                      223344443


Q ss_pred             HHH-HHHHHHHHH--hC----------------CCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChH------
Q 006898          260 MVA-NQLYELCEA--VG----------------PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE------  314 (626)
Q Consensus       260 ~a~-~~l~~l~~~--~~----------------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~------  314 (626)
                      ... +.+..+...  .+                +......+..-+++-++|+....|..++.+..++...+|..      
T Consensus       482 ~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErl  561 (975)
T COG5181         482 QVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERL  561 (975)
T ss_pred             hhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHH
Confidence            221 111111110  00                00012334555556667776666776666665555444310      


Q ss_pred             --------------------------------------HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhh---cHH
Q 006898          315 --------------------------------------LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL---GKD  353 (626)
Q Consensus       315 --------------------------------------~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~---~~~  353 (626)
                                                            .+...++..+..++.++.+.+|..++..++.++..+   |+.
T Consensus       562 eerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~  641 (975)
T COG5181         562 EERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGET  641 (975)
T ss_pred             HHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchH
Confidence                                                  112333444456678899999999998888877654   555


Q ss_pred             HHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhH---HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh
Q 006898          354 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV  430 (626)
Q Consensus       354 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~---~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~  430 (626)
                      ....++-.++..-+....++|--..+.++..+....+-...   ...++|.+..++++++..+....+..++.++.....
T Consensus       642 ~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~pe  721 (975)
T COG5181         642 KELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPE  721 (975)
T ss_pred             HHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcc
Confidence            55667777788888888999988888888887776654422   257899999999999999999999999998875432


Q ss_pred             hhHHHHHHHH---HHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccC
Q 006898          431 GFFDDKLGAL---CMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG  507 (626)
Q Consensus       431 ~~~~~~l~p~---l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~  507 (626)
                      ..-....+-+   +...+...+.++|++|..++|-+...+|+.    .++..+++.++..+.+.|.+..-+++..++.++
T Consensus       722 yi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPq----dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg  797 (975)
T COG5181         722 YIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQ----DVLDILLNNLKVQERQQRVCTSVAISIVAEYCG  797 (975)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHH----HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC
Confidence            2111222222   445667789999999999999999999985    578888888888899999999999999999998


Q ss_pred             hHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc--hhhhcccchHHhhhccCCCccccc
Q 006898          508 SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VSTFSVSPFSFMLYLNVNNFNVGF  572 (626)
Q Consensus       508 ~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~~l~~d~d~~vr~  572 (626)
                      +-    .++|.++.-...++.+|+...++++.-+.+..|+.  .+...+.|.|. ..+.|.|..-|.
T Consensus       798 pf----sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlle-DAltDrD~vhRq  859 (975)
T COG5181         798 PF----SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLE-DALTDRDPVHRQ  859 (975)
T ss_pred             ch----hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHH-hhhcccchHHHH
Confidence            74    57888888888999999999999999999999885  56678999999 889999998888

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=99.89  E-value=2.5e-19  Score=172.49  Aligned_cols=537  Identities=15%  Similarity=0.112  Sum_probs=367.1

Q ss_pred             hcCccHHHHHHHHhhHHHHHHhhChHhhhhhhcccccc-ccC-CchHHHHHHHHHHhccccccCCc--chhhcchHHHhh
Q 006898           18 LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NND-DDDEVLLAMAEELGVFIPYVGGV--EHAHVLLPPLET   93 (626)
Q Consensus        18 l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~-~~~~vr~~~~~~l~~~~~~~~~~--~~~~~l~~~l~~   93 (626)
                      +.+.|+.+|.-..++.+.++.++|-    ++++|++.. +.+ ++.+-|+...++..++...+|..  .+...++.++..
T Consensus       290 i~~~deYVRnvt~ra~~vva~algv----~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~  365 (975)
T COG5181         290 ITSKDEYVRNVTGRAVGVVADALGV----EELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISK  365 (975)
T ss_pred             cccccHHHHHHHHHHHHHHHHhhCc----HHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHH
Confidence            4688999999999999999998884    688899987 544 36777888887777776665543  355667788888


Q ss_pred             hhcCcchHHHHHHHHHHHHHHhhcChhhHHH---hHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChH----HHHHHHH
Q 006898           94 LCTVEETCVRDKAVESLCRIGSQMRESDLVD---WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRS  166 (626)
Q Consensus        94 l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~---~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~----~~~~l~~  166 (626)
                      ++.|+...||..++.+++.+++...|..+++   .+-|+.....+ ....+-.+.....+-+.+..+++    ...+...
T Consensus       366 ~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~-hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~  444 (975)
T COG5181         366 LLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQ-HRGKELVSFLKAMGFIIPLMSPEYACHDTREHME  444 (975)
T ss_pred             HhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHh-cCCchHHHHHHHhccccccCChHhhhhhHHHHHH
Confidence            9999999999999999999999888743332   23333322221 11111122222333333433332    1233444


Q ss_pred             HHHHhcCCCCHHHHHHHHHhHHHHHHhhCc-----------------------------------------cchhhhHHH
Q 006898          167 IYTQLCQDDMPMVRRSAASNLGKFAATVEP-----------------------------------------AHLKTDIMS  205 (626)
Q Consensus       167 ~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-----------------------------------------~~~~~~ll~  205 (626)
                      ++...++.++...++............-+.                                         ..-.+.+..
T Consensus       445 iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~  524 (975)
T COG5181         445 IVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSR  524 (975)
T ss_pred             HHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHH
Confidence            444444444333333222221111111000                                         000123444


Q ss_pred             HHHHhhcCCchhHHHHHHHHHHHhhcccCch--------------------------------------------hhhhh
Q 006898          206 IFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--------------------------------------------DCVAH  241 (626)
Q Consensus       206 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--------------------------------------------~~~~~  241 (626)
                      -+....+|+.+..|..+..+...+...+|..                                            .+...
T Consensus       525 kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~  604 (975)
T COG5181         525 KILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSM  604 (975)
T ss_pred             HHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHH
Confidence            5556667777777777777666655544421                                            12233


Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh---CCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHH---
Q 006898          242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAV---GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL---  315 (626)
Q Consensus       242 i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---  315 (626)
                      ++..+...+.++.+.||..++...+.++..+   |+......+-.++.+-+....|+|-...++++..+....+...   
T Consensus       605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqp  684 (975)
T COG5181         605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQP  684 (975)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCC
Confidence            4555566788999999999999888877654   3333344566677777888889998888888877766544321   


Q ss_pred             HHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHH---HHHhhcCCCHHHHHHHHHhhHHHHhhhchh
Q 006898          316 AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI---FLSLLKDEFPDVRLNIISKLDQVNQVIGID  392 (626)
Q Consensus       316 ~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~---l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~  392 (626)
                      -...++|.+...+.+++..|....+..++.++..-+...-....+.+   +...|+.-+.++|.+|..+++.+.+.+|++
T Consensus       685 Pi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPq  764 (975)
T COG5181         685 PISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQ  764 (975)
T ss_pred             chhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHH
Confidence            12567777777788889999888888888887543322112233333   345566778999999999999999999985


Q ss_pred             hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHH-
Q 006898          393 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW-  471 (626)
Q Consensus       393 ~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~-  471 (626)
                          .++..+.+-++..+.+.|....-+++.+++.+|+-    .++|.++.--..++.+|++...+++..+++..|... 
T Consensus       765 ----dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf----sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~  836 (975)
T COG5181         765 ----DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF----SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASL  836 (975)
T ss_pred             ----HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch----hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHH
Confidence                56677777777777778888888888888888874    367888888888999999999999999999887642 


Q ss_pred             -HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccC---hHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhcc
Q 006898          472 -AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG---SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  547 (626)
Q Consensus       472 -~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~---~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~  547 (626)
                       ..-.+.|.+...+.|.++..|+.+...+.+++-.+.   .+...-+++..+....-++.|.|....-+++..+...+|.
T Consensus       837 dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~  916 (975)
T COG5181         837 DYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGS  916 (975)
T ss_pred             HHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhcc
Confidence             335678999999999999999999999999976553   3445556677777777799999999999999999999998


Q ss_pred             chhhhcccchHHhhhccCCCccccc
Q 006898          548 SVSTFSVSPFSFMLYLNVNNFNVGF  572 (626)
Q Consensus       548 ~~~~~~i~~~l~~~l~~d~d~~vr~  572 (626)
                      ..+.+++...|.     .|...||.
T Consensus       917 g~~m~Yv~qGLF-----HPs~~VRk  936 (975)
T COG5181         917 GAMMKYVQQGLF-----HPSSTVRK  936 (975)
T ss_pred             HHHHHHHHHhcc-----CchHHHHH
Confidence            777667665555     56666666

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=99.88  E-value=1.5e-18  Score=169.66  Aligned_cols=471  Identities=14%  Similarity=0.074  Sum_probs=346.1

Q ss_pred             cCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcC-CccchhHHHhhHhHHhcCCCCh--HHHHHHHHHHHHhc
Q 006898           96 TVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAG-EWFTARVSACGLFHIAYPSAPD--ILKTELRSIYTQLC  172 (626)
Q Consensus        96 ~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~-~~~~~r~~a~~~l~~~~~~~~~--~~~~~l~~~l~~l~  172 (626)
                      .|+...+|..-.++.......-+.+. ...+.|...+.++. .++..|.......+.+..+...  .....++..+..-+
T Consensus        27 ~d~~~~v~~~ml~a~~~~~~~~~~~~-v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~~~~~~~~  105 (569)
T KOG1242|consen   27 EDRRIDVRGNMLEAGEAAINQHGDQN-VLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISIIEILLEEL  105 (569)
T ss_pred             CCcchhhHHhHHHHHHHHHHhhhHHH-HHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHHHHHHHHhc
Confidence            67778888877777666655544433 34466666555543 3566777777777777766643  24456777888888


Q ss_pred             CCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhh-hhhhHHHHHHhcC
Q 006898          173 QDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDC-VAHILPVIVNFSQ  251 (626)
Q Consensus       173 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~i~~~l~~~~~  251 (626)
                      +-+++.+|++...++..+...... .-...+.+.+.++++...-.-|..+...+..+....+-+.. ...++..+.....
T Consensus       106 ~tps~~~q~~~~~~l~~~~~~~~~-~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~  184 (569)
T KOG1242|consen  106 DTPSKSVQRAVSTCLPPLVVLSKG-LSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAII  184 (569)
T ss_pred             CCCcHHHHHHHHHHhhhHHHHhhc-cCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhc
Confidence            999999999999999887765543 22356777777888877777888888888888777665332 3456777778888


Q ss_pred             CCCHH-HHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhc
Q 006898          252 DKSWR-VRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS  328 (626)
Q Consensus       252 d~~~~-vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~  328 (626)
                      |.... .|+.+..++......+|...  +.-.++|.++.-+.|..+.||.++..+...+...+....+ +.++|.+..-+
T Consensus       185 dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV-K~llpsll~~l  263 (569)
T KOG1242|consen  185 DKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV-KLLLPSLLGSL  263 (569)
T ss_pred             ccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh-hHhhhhhHHHH
Confidence            87655 44466677777777787543  2336777788888899999999999999999888877655 45555555444


Q ss_pred             cCCCHHHHHHHHHHHHhhhhhhcH--HHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHh
Q 006898          329 SDSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA  406 (626)
Q Consensus       329 ~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~  406 (626)
                      .+..|+-+.++++.++.++...+.  +...+.++|.+...++|..++||.++..++..++..+....+ +.++|.+.+.+
T Consensus       264 ~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI-~~~ip~Lld~l  342 (569)
T KOG1242|consen  264 LEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI-QKIIPTLLDAL  342 (569)
T ss_pred             HHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH-HHHHHHHHHHh
Confidence            445999999999999998877654  345778999999999999999999999999999998887775 67999999999


Q ss_pred             cCCChHHHHHHHHHHHH-HHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh-HH---HhhhhHHHHH
Q 006898          407 EDRHWRVRLAIIEYIPL-LASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP-EW---AMQHITPQVL  481 (626)
Q Consensus       407 ~~~~~~~r~~~~~~l~~-l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~-~~---~~~~il~~l~  481 (626)
                      .|++.++..+.-..... ++....+ .....++|++.+.+.+++...++.++..++.++....+ .+   +...++|.+.
T Consensus       343 ~dp~~~~~e~~~~L~~ttFV~~V~~-psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk  421 (569)
T KOG1242|consen  343 ADPSCYTPECLDSLGATTFVAEVDA-PSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLK  421 (569)
T ss_pred             cCcccchHHHHHhhcceeeeeeecc-hhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHH
Confidence            99985555443221111 1111111 22456899999999999999999999999999998843 32   3477888888


Q ss_pred             hhhcCCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCch-HHHHHHHHHHHHHhhhccchhhhcccchHHh
Q 006898          482 EMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPN-IKFNVAKVLQSLIPIVDQSVSTFSVSPFSFM  560 (626)
Q Consensus       482 ~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~-vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~  560 (626)
                      ..+.|+.+.+|..+.++++.+.+..|...+ ....|.+....++.... -|..+++.++.....++...+.+.+-..+..
T Consensus       422 ~~~~d~~PEvR~vaarAL~~l~e~~g~~~f-~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~~~~~~~~~a~  500 (569)
T KOG1242|consen  422 ENLDDAVPEVRAVAARALGALLERLGEVSF-DDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKVEDILPEILAN  500 (569)
T ss_pred             HHhcCCChhHHHHHHHHHHHHHHHHHhhcc-cccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHHHHHHHHHHHH
Confidence            888999999999999999999998887655 78888888887665544 5889999999999888876554333333331


Q ss_pred             hhccCCCccccc
Q 006898          561 LYLNVNNFNVGF  572 (626)
Q Consensus       561 ~l~~d~d~~vr~  572 (626)
                      ......++.++.
T Consensus       501 ~~~~~~~~~~~d  512 (569)
T KOG1242|consen  501 ASSVLIDERIRD  512 (569)
T ss_pred             Hhhccchhhhcc
Confidence            223344555666

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.88  E-value=4.7e-19  Score=187.22  Aligned_cols=498  Identities=18%  Similarity=0.170  Sum_probs=360.0

Q ss_pred             ccHHHHHHHHhhHHHHHHhhChHhhhhhhcccccc-ccCCchHHHHHHHHHHhccccccCCcchhhcchHHHhhhhcCcc
Q 006898           21 DDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEE   99 (626)
Q Consensus        21 ~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~   99 (626)
                      .+...|..+++.+-.+ ...|.+.  +.+.+.+.. +..++.+.++.+--.+..+...  .++..-.+.+.+.+=+.+++
T Consensus        18 ~~~~~~~~~l~kli~~-~~~G~~~--~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~~~~~l~~n~l~kdl~~~n   92 (526)
T PF01602_consen   18 IDISKKKEALKKLIYL-MMLGYDI--SFLFMEVIKLISSKDLELKRLGYLYLSLYLHE--DPELLILIINSLQKDLNSPN   92 (526)
T ss_dssp             THHHHHHHHHHHHHHH-HHTT-----GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTT--SHHHHHHHHHHHHHHHCSSS
T ss_pred             CCHHHHHHHHHHHHHH-HHcCCCC--chHHHHHHHHhCCCCHHHHHHHHHHHHHHhhc--chhHHHHHHHHHHHhhcCCC
Confidence            3888888888888876 4555433  244444444 5577888888887777776652  33333445555666667899


Q ss_pred             hHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHH
Q 006898          100 TCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMV  179 (626)
Q Consensus       100 ~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~v  179 (626)
                      +.+|-.|.++++.+.    .....+.+.+.+.+++.++++.+|..|+.++..++...++.....+.+.+..++.|+++.|
T Consensus        93 ~~~~~lAL~~l~~i~----~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V  168 (526)
T PF01602_consen   93 PYIRGLALRTLSNIR----TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSV  168 (526)
T ss_dssp             HHHHHHHHHHHHHH-----SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHH
T ss_pred             HHHHHHHHhhhhhhc----ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchh
Confidence            999999999999886    2345566888899999999999999999999998877555433227889999999999999


Q ss_pred             HHHHHHhHHHHHHhhCcc---chhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHH
Q 006898          180 RRSAASNLGKFAATVEPA---HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWR  256 (626)
Q Consensus       180 R~~a~~~l~~l~~~~~~~---~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~  256 (626)
                      +.+|+.++..+ + ..++   ...+.+.+.+.+.+.+.++..+...++.+..++...........+++.+...+++.++.
T Consensus       169 ~~~a~~~l~~i-~-~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~  246 (526)
T PF01602_consen  169 VSAALSLLSEI-K-CNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPS  246 (526)
T ss_dssp             HHHHHHHHHHH-H-CTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-c-cCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccH
Confidence            99999999988 2 1222   34455666666667888888888888888766543332211145777777777788888


Q ss_pred             HHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHH
Q 006898          257 VRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVR  336 (626)
Q Consensus       257 vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr  336 (626)
                      |+..++.++..+..   .......+++.+..++.+.++++|..++.++..++... +..+ ......+..+..+++..+|
T Consensus       247 V~~e~~~~i~~l~~---~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~-~~~v-~~~~~~~~~l~~~~d~~Ir  321 (526)
T PF01602_consen  247 VVYEAIRLIIKLSP---SPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN-PPAV-FNQSLILFFLLYDDDPSIR  321 (526)
T ss_dssp             HHHHHHHHHHHHSS---SHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC-HHHH-GTHHHHHHHHHCSSSHHHH
T ss_pred             HHHHHHHHHHHhhc---chHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc-chhh-hhhhhhhheecCCCChhHH
Confidence            88888887775432   12234567888999999999999999999999887754 2222 1222333444558889999


Q ss_pred             HHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCC-CHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHH
Q 006898          337 SALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL  415 (626)
Q Consensus       337 ~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~  415 (626)
                      ..+++.+..++..    .....+++.+...+.+. ++++|..++.+++.++..+..+.  +..++.+.+++...+..+..
T Consensus       322 ~~~l~lL~~l~~~----~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~--~~~v~~l~~ll~~~~~~~~~  395 (526)
T PF01602_consen  322 KKALDLLYKLANE----SNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDA--EWYVDTLLKLLEISGDYVSN  395 (526)
T ss_dssp             HHHHHHHHHH--H----HHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSH--HHHHHHHHHHHHCTGGGCHC
T ss_pred             HHHHHHHhhcccc----cchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchH--HHHHHHHHHhhhhccccccc
Confidence            9999988888743    33445777788888544 78899999999999998875543  56788888888887777788


Q ss_pred             HHHHHHHHHHHhhChhhHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHH
Q 006898          416 AIIEYIPLLASQLGVGFFDDKLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMT  494 (626)
Q Consensus       416 ~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d-~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~  494 (626)
                      .++..+..+.......  ....+..+...+.+ .++.++..+++++|..+...........++..+.+.+.+.+..+|..
T Consensus       396 ~~~~~i~~ll~~~~~~--~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~  473 (526)
T PF01602_consen  396 EIINVIRDLLSNNPEL--REKILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQ  473 (526)
T ss_dssp             HHHHHHHHHHHHSTTT--HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred             hHHHHHHHHhhcChhh--hHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHH
Confidence            8888887777553322  23456666666665 66789999999999998887651134567777777788888899999


Q ss_pred             HHHHHHHhccccChHHhhhcHHHHHhhhCC--CCCchHHHHHHHHHHHHH
Q 006898          495 ILRAISLLAPVMGSEITCSRLLPVVINASK--DRVPNIKFNVAKVLQSLI  542 (626)
Q Consensus       495 a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~--d~~~~vR~~a~~~l~~i~  542 (626)
                      ++.++..+....+.+...+.+.+.+..+.+  +.+++||..|...+.-+-
T Consensus       474 ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll~  523 (526)
T PF01602_consen  474 ILTALAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVRDRAREYLRLLN  523 (526)
T ss_dssp             HHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHc
Confidence            999999998877654455688888888888  889999999988776553

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.86  E-value=1.2e-18  Score=184.16  Aligned_cols=472  Identities=14%  Similarity=0.114  Sum_probs=351.9

Q ss_pred             cchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHH
Q 006898           86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELR  165 (626)
Q Consensus        86 ~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~  165 (626)
                      ...+-..+++++++...|+.+--++..+...-+.  ..-.....+.+-+.++++.+|..|.+.++.+.   .++..+.+.
T Consensus        42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~--~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~---~~~~~~~l~  116 (526)
T PF01602_consen   42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPE--LLILIINSLQKDLNSPNPYIRGLALRTLSNIR---TPEMAEPLI  116 (526)
T ss_dssp             STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHH--HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH----SHHHHHHHH
T ss_pred             hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchh--HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc---ccchhhHHH
Confidence            4555555666688888898888777777664332  22335566677778888999999999999886   567888999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCch--hhhhhhH
Q 006898          166 SIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHIL  243 (626)
Q Consensus       166 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~  243 (626)
                      +.+.+++.|+++.||+.|+.++..+.+..+. .....+++.+.+++.|+++.|+..|+.++..+ +.-++.  ...+.+.
T Consensus       117 ~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~-~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~  194 (526)
T PF01602_consen  117 PDVIKLLSDPSPYVRKKAALALLKIYRKDPD-LVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLI  194 (526)
T ss_dssp             HHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC-CHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHH
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHhccCHH-HHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHH
Confidence            9999999999999999999999999987443 22222789999999999999999999999888 211111  3345555


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccc--cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhH
Q 006898          244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR--MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHIL  321 (626)
Q Consensus       244 ~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  321 (626)
                      ..+.+.+.++++..+..+++.+..++....  ...  ..+++.+..++++.++.|+..++.++..+..   .......++
T Consensus       195 ~~L~~~l~~~~~~~q~~il~~l~~~~~~~~--~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~---~~~~~~~~~  269 (526)
T PF01602_consen  195 RILCQLLSDPDPWLQIKILRLLRRYAPMEP--EDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSP---SPELLQKAI  269 (526)
T ss_dssp             HHHHHHHTCCSHHHHHHHHHHHTTSTSSSH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---SHHHHHHHH
T ss_pred             HHhhhcccccchHHHHHHHHHHHhcccCCh--hhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhc---chHHHHhhH
Confidence            666666688888888888887775543211  112  3578888888888888998888888775543   223457788


Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHH
Q 006898          322 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA  401 (626)
Q Consensus       322 ~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~  401 (626)
                      +.+..++.++++.+|..+++.+..++........  .....+..+..|++..+|..++..+..++..-..    +.+++.
T Consensus       270 ~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~----~~Il~e  343 (526)
T PF01602_consen  270 NPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF--NQSLILFFLLYDDDPSIRKKALDLLYKLANESNV----KEILDE  343 (526)
T ss_dssp             HHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG--THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHH----HHHHHH
T ss_pred             HHHHHHhhcccchhehhHHHHHHHhhcccchhhh--hhhhhhheecCCCChhHHHHHHHHHhhcccccch----hhHHHH
Confidence            8899999999999999999999999876522222  3233344445588999999999999888764332    457888


Q ss_pred             HHHHhc-CCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHH
Q 006898          402 IVELAE-DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV  480 (626)
Q Consensus       402 l~~~~~-~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l  480 (626)
                      +.+.+. ..+..+|..++..+..++......  .+..++.++.++......+...+...+..+......  ....++..+
T Consensus       344 L~~~l~~~~d~~~~~~~i~~I~~la~~~~~~--~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~--~~~~~l~~L  419 (526)
T PF01602_consen  344 LLKYLSELSDPDFRRELIKAIGDLAEKFPPD--AEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPE--LREKILKKL  419 (526)
T ss_dssp             HHHHHHHC--HHHHHHHHHHHHHHHHHHGSS--HHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTT--THHHHHHHH
T ss_pred             HHHHHHhccchhhhhhHHHHHHHHHhccCch--HHHHHHHHHHhhhhccccccchHHHHHHHHhhcChh--hhHHHHHHH
Confidence            888874 447789999999999999877442  345778888999888888898999998888876433  245577888


Q ss_pred             HhhhcC-CChHHHHHHHHHHHHhccccCh-HHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccchhhhcccchH
Q 006898          481 LEMINN-PHYLYRMTILRAISLLAPVMGS-EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFS  558 (626)
Q Consensus       481 ~~~l~~-~~~~vR~~a~~~l~~i~~~~~~-~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l  558 (626)
                      .+.+.+ .++..+..+++++|..+...+. + ....++..+.....+.++.||..+..++.++....+.....+.+.+.+
T Consensus       420 ~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~  498 (526)
T PF01602_consen  420 IELLEDISSPEALAAAIWILGEYGELIENTE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFL  498 (526)
T ss_dssp             HHHHTSSSSHHHHHHHHHHHHHHCHHHTTTT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHhhhcccCCcccccc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHH
Confidence            877765 6778999999999999887765 3 456677777777778889999999999999998876555556788888


Q ss_pred             Hhhhcc--CCCcccccccccCchhHHHHHHHHHH
Q 006898          559 FMLYLN--VNNFNVGFIFAAFPLVLFSCLALNYC  590 (626)
Q Consensus       559 ~~~l~~--d~d~~vr~~~~~~~~~~~a~~al~~~  590 (626)
                      . .+..  +.|.+||.         .|..-+.-+
T Consensus       499 ~-~~~~~~s~~~evr~---------Ra~~y~~ll  522 (526)
T PF01602_consen  499 L-SLATEDSSDPEVRD---------RAREYLRLL  522 (526)
T ss_dssp             H-CHHHHS-SSHHHHH---------HHHHHHHHH
T ss_pred             H-HHhccCCCCHHHHH---------HHHHHHHHH
Confidence            8 8877  88999999         777655443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=99.86  E-value=3.4e-18  Score=167.25  Aligned_cols=515  Identities=16%  Similarity=0.133  Sum_probs=365.5

Q ss_pred             cccccc-ccCCchHHHHHHHHHHhccccccCCcchhhcchHHHhhhh-cCcchHHHHHHHHHHHHHHhhcChhhHHHh-H
Q 006898           50 IPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLC-TVEETCVRDKAVESLCRIGSQMRESDLVDW-Y  126 (626)
Q Consensus        50 ~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~-~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~-l  126 (626)
                      ++++.. -.|+.+.||....++.......- +.+....+.|.+..-+ ++.+..+|+..+---+.+..++...+...+ +
T Consensus        19 ~~~~~~~g~d~~~~v~~~ml~a~~~~~~~~-~~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~   97 (569)
T KOG1242|consen   19 LLFLVSAGEDRRIDVRGNMLEAGEAAINQH-GDQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISI   97 (569)
T ss_pred             ceeecccCCCcchhhHHhHHHHHHHHHHhh-hHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHH
Confidence            555544 35667778877776655443322 3445556677765544 445778888888777888887765433322 3


Q ss_pred             HHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccch-hhhHHH
Q 006898          127 IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHL-KTDIMS  205 (626)
Q Consensus       127 ~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~-~~~ll~  205 (626)
                      +..+.+-.+.+...+|.++..++..+...........+.+.+.++++.....-|..++..+..+....+.+.. ...++.
T Consensus        98 ~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~  177 (569)
T KOG1242|consen   98 IEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLD  177 (569)
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHH
Confidence            4444445555677788888888887766665556677777888888877888899999988888877665433 235777


Q ss_pred             HHHHhhcCCch-hHHHHHHHHHHHhhcccCc--hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchH
Q 006898          206 IFEDLTQDDQD-SVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLV  282 (626)
Q Consensus       206 ~l~~l~~d~~~-~vr~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~  282 (626)
                      .+.....|... ..|+.+..+.......+++  +.+.-.++|.+...+.|....||.++..+...+...+.... ...++
T Consensus       178 ~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~a-VK~ll  256 (569)
T KOG1242|consen  178 NLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYA-VKLLL  256 (569)
T ss_pred             HHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcch-hhHhh
Confidence            77888888755 4455677777777777775  55566667777777889999999999999888887765444 34566


Q ss_pred             HHHHHhcCCChHHHHHHHHHhHHHHHHhhChH--HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHH
Q 006898          283 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL  360 (626)
Q Consensus       283 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~  360 (626)
                      |.++.-+.+..|....++++.++.++...+..  ...+.++|.+.+.+.|.++.||.++.+++..++....... ...++
T Consensus       257 psll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~~~i  335 (569)
T KOG1242|consen  257 PSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQKII  335 (569)
T ss_pred             hhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HHHHH
Confidence            66665555558888999999999887765544  4467889999999999999999999999999988776654 56788


Q ss_pred             HHHHHhhcCCCHHHHHHHHHhhHH--HHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh-Chh---hHH
Q 006898          361 PIFLSLLKDEFPDVRLNIISKLDQ--VNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GVG---FFD  434 (626)
Q Consensus       361 ~~l~~~l~d~~~~vr~~a~~~L~~--~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~-~~~---~~~  434 (626)
                      |.+..++.|+...+.. +...|+.  +...+....+ ..++|.+.+-+.+.+...+..++..+..++... .+.   .|.
T Consensus       336 p~Lld~l~dp~~~~~e-~~~~L~~ttFV~~V~~psL-almvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl  413 (569)
T KOG1242|consen  336 PTLLDALADPSCYTPE-CLDSLGATTFVAEVDAPSL-ALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFL  413 (569)
T ss_pred             HHHHHHhcCcccchHH-HHHhhcceeeeeeecchhH-HHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhH
Confidence            9999999998755443 2233322  2222333222 567888888888888888888888899888877 333   244


Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCC-ChHHHHHHHHHHHHhccccChHHhhh
Q 006898          435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNP-HYLYRMTILRAISLLAPVMGSEITCS  513 (626)
Q Consensus       435 ~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~-~~~vR~~a~~~l~~i~~~~~~~~~~~  513 (626)
                      +.++|-+...+.|..++||..+.++++.+.+..|...+ ....|.+.+...+. ....|..+++.++......+.+. ..
T Consensus       414 ~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f-~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~-~~  491 (569)
T KOG1242|consen  414 PSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF-DDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEK-VE  491 (569)
T ss_pred             HHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc-cccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchH-HH
Confidence            66788888889999999999999999999999987754 77889998877654 56679999999999988877663 44


Q ss_pred             cHHHHHhhhCCCC--CchHHHHHHHHHHHHHhhhcc--chhhhcccchHHhhhccCCCccccc
Q 006898          514 RLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQ--SVSTFSVSPFSFMLYLNVNNFNVGF  572 (626)
Q Consensus       514 ~~l~~l~~~l~d~--~~~vR~~a~~~l~~i~~~~~~--~~~~~~i~~~l~~~l~~d~d~~vr~  572 (626)
                      .++|.+.......  ++.+|..-.+.+.-+-...+.  .++...+++.+. +-+.|.|+.++.
T Consensus       492 ~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~-k~~ad~de~~~~  553 (569)
T KOG1242|consen  492 DILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFL-KGLADNDEKGRD  553 (569)
T ss_pred             HHHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHH-HHhhhcCCcccc
Confidence            5555555544333  344777766666554333332  245556677666 666688888888

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=99.86  E-value=1.6e-17  Score=167.57  Aligned_cols=508  Identities=15%  Similarity=0.137  Sum_probs=346.7

Q ss_pred             CCchHHHHHHHHHH-hcccc---ccCCcchhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHH
Q 006898           58 DDDDEVLLAMAEEL-GVFIP---YVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRL  133 (626)
Q Consensus        58 ~~~~~vr~~~~~~l-~~~~~---~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l  133 (626)
                      ++|-..|.+|..-| ..+-+   .+ +.+....++..+.++++|.+.+|.+.|++|++-+.+..+.++++..+-.++..+
T Consensus        16 ssDKDfRfMAtsDLm~eLqkdsi~L-d~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~   94 (1233)
T KOG1824|consen   16 SSDKDFRFMATSDLMTELQKDSIKL-DDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNM   94 (1233)
T ss_pred             CCCcchhhhhHHHHHHHHHhhhhhc-cccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhh
Confidence            44455566665433 22221   11 123445677788888999999999999999999999998887776666666665


Q ss_pred             hcCCccchhHHHhh---HhHHhcCCCC----hHHHHHHHHHHHHhcC--CCCHHHHHHHHHhHHHHHHhhCc--cchhhh
Q 006898          134 AAGEWFTARVSACG---LFHIAYPSAP----DILKTELRSIYTQLCQ--DDMPMVRRSAASNLGKFAATVEP--AHLKTD  202 (626)
Q Consensus       134 ~~~~~~~~r~~a~~---~l~~~~~~~~----~~~~~~l~~~l~~l~~--d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~  202 (626)
                      .+++....-.++..   .++++.+..+    ......+.+.+.....  .+...+|-.++..++.+...+|.  ..+...
T Consensus        95 ~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~  174 (1233)
T KOG1824|consen   95 LSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLS  174 (1233)
T ss_pred             ccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHH
Confidence            55543222223333   4444554332    2455666777666432  34566888899999888888775  346666


Q ss_pred             HHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcc--ccc
Q 006898          203 IMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--RMD  280 (626)
Q Consensus       203 ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~--~~~  280 (626)
                      ++..+..-+..+...||+.++.+++.++..++...+...+-..+..+...++...-+..+++++.++...|....  ...
T Consensus       175 il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~  254 (1233)
T KOG1824|consen  175 ILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDK  254 (1233)
T ss_pred             HHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccch
Confidence            777777777888889999999999999998888765555555555555555555555667999999999887653  347


Q ss_pred             hHHHHHHhc---CCChHHHHHHHHHhHHHHHHhhChHH--HHHhhHHHHHHhc---------------------------
Q 006898          281 LVPAYVRLL---RDNEAEVRIAAAGKVTKFCRILNPEL--AIQHILPCVKELS---------------------------  328 (626)
Q Consensus       281 l~~~l~~~l---~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~l~---------------------------  328 (626)
                      ++|.+.+.+   +..+.+.|+.++++++.|....+.+.  +++.++..+.+.+                           
T Consensus       255 ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~  334 (1233)
T KOG1824|consen  255 IVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQ  334 (1233)
T ss_pred             hhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchh
Confidence            889888888   66778999999999999998876552  2233333332221                           


Q ss_pred             -------cCCCHHHHHHHHHHHHhhhhhhcH--HHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhch--------
Q 006898          329 -------SDSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--------  391 (626)
Q Consensus       329 -------~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~--------  391 (626)
                             +|-+|.||+++++++..+.....+  ..+...+-|.+..-+++.+++|+...+.+.-.+....++        
T Consensus       335 ~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~  414 (1233)
T KOG1824|consen  335 DDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADN  414 (1233)
T ss_pred             ccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCc
Confidence                   134699999999999887654322  235567889999999999999999888877666544321        


Q ss_pred             --------h---hHH----hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHhcCCc--hHH
Q 006898          392 --------D---LLS----QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKV--YSI  452 (626)
Q Consensus       392 --------~---~~~----~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~--~~~~l~p~l~~~l~d~~--~~V  452 (626)
                              .   ++.    ..++..+.+.+++++-..|..++..+..+...+....  ....++|.+...+.|.+  .+.
T Consensus       415 d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~  494 (1233)
T KOG1824|consen  415 DAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNL  494 (1233)
T ss_pred             hhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHH
Confidence                    1   111    1233444444556666678888888888777654322  22457888888888865  456


Q ss_pred             HHHHHHHHHHHHHHhChHHHh---hhhHHHHHhhhcCCChHHHHHHHHHHHHhccccC---------hHHhhhcHHHHHh
Q 006898          453 RDAAANNLKRLAEEFGPEWAM---QHITPQVLEMINNPHYLYRMTILRAISLLAPVMG---------SEITCSRLLPVVI  520 (626)
Q Consensus       453 R~~a~~~l~~l~~~~~~~~~~---~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~---------~~~~~~~~l~~l~  520 (626)
                      +..+...+.......+++.+.   ..+.|.+.....++-+++-..|+...+.+++.+.         ...+...++....
T Consensus       495 ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl  574 (1233)
T KOG1824|consen  495 KIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTL  574 (1233)
T ss_pred             HHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHH
Confidence            767777766666666665432   4566667777899999999999988888876542         2334455555555


Q ss_pred             hhC--CCCCchHHHHHHHHHHHHHhhhccc--hhhhcccchHHhhhccCC
Q 006898          521 NAS--KDRVPNIKFNVAKVLQSLIPIVDQS--VSTFSVSPFSFMLYLNVN  566 (626)
Q Consensus       521 ~~l--~d~~~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~~l~~d~  566 (626)
                      +.+  +|.+.+||..|+.++|.++..+|+.  ...+.++|.+.+++.++.
T Consensus       575 ~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nEi  624 (1233)
T KOG1824|consen  575 QRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNEI  624 (1233)
T ss_pred             HHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhchh
Confidence            544  6888899999999999999998853  334566777665666653

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.83  E-value=4.2e-15  Score=142.55  Aligned_cols=500  Identities=14%  Similarity=0.103  Sum_probs=335.3

Q ss_pred             cHHHHHHHHhhHHHHHHhhChHhhhh----hhcccccc--ccCCchHHHHHHHHHHhc-c--cc-ccCCcchhhcchHHH
Q 006898           22 DIQLRLNSIRRLSTIARALGEERTRK----ELIPFLSE--NNDDDDEVLLAMAEELGV-F--IP-YVGGVEHAHVLLPPL   91 (626)
Q Consensus        22 d~~~r~~a~~~l~~i~~~~~~~~~~~----~l~~~l~~--~~~~~~~vr~~~~~~l~~-~--~~-~~~~~~~~~~l~~~l   91 (626)
                      ....+.+++.++++......|+....    -+......  -.+++..||.++.++|.. +  ++ ....+...+.++...
T Consensus       147 p~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvv  226 (858)
T COG5215         147 PVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVV  226 (858)
T ss_pred             chHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheee
Confidence            44456666666666666555533221    12222222  245677899999988865 2  22 111234566777777


Q ss_pred             hhhhcCcchHHHHHHHHHHHHHHhhcCh---hhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCC----------CC-
Q 006898           92 ETLCTVEETCVRDKAVESLCRIGSQMRE---SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPS----------AP-  157 (626)
Q Consensus        92 ~~l~~~~~~~vR~~a~~~l~~i~~~~~~---~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~----------~~-  157 (626)
                      ....+.++.++..+|..|+.+|....-.   .-.++-+..+..+...++++.+...+.+..+.+++.          ++ 
T Consensus       227 ceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe  306 (858)
T COG5215         227 CEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPE  306 (858)
T ss_pred             ehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhccc
Confidence            7777888999999999999998875433   222333555666777888888888888877665531          11 


Q ss_pred             ---------hHHHHHHHHHHHHhcC-------CCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHH
Q 006898          158 ---------DILKTELRSIYTQLCQ-------DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLL  221 (626)
Q Consensus       158 ---------~~~~~~l~~~l~~l~~-------d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~  221 (626)
                               .....+++|.+++++.       +.+|.+-.+|..+|.-+++..|+... .-++.++.+-+..++|.-|.+
T Consensus       307 ~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~-~pVl~FvEqni~~~~w~nrea  385 (858)
T COG5215         307 VPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIM-RPVLGFVEQNIRSESWANREA  385 (858)
T ss_pred             CchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhH-HHHHHHHHHhccCchhhhHHH
Confidence                     0123557777777653       35789999999999999998876433 337777888899999999999


Q ss_pred             HHHHHHHhhcccCc---hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcccc-chHHHHH---HhcCCChH
Q 006898          222 AVEGCAALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM-DLVPAYV---RLLRDNEA  294 (626)
Q Consensus       222 a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~-~l~~~l~---~~l~d~~~  294 (626)
                      ++-+++.+.+.-.+   ..+.+..+|.+....+|+.-.|+..++.++|.++........+. ++.+...   ..+.| .|
T Consensus       386 avmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D-~p  464 (858)
T COG5215         386 AVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD-CP  464 (858)
T ss_pred             HHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc-cc
Confidence            99999998876554   34677788889899999999999999999999998775443332 2333322   22334 34


Q ss_pred             HHHHHHHHhHHHHHHhhChH---------HHHHhhHHHHHHhc--cCCCHHHHHHHHHHHHhhhhhhcHHH------HHH
Q 006898          295 EVRIAAAGKVTKFCRILNPE---------LAIQHILPCVKELS--SDSSQHVRSALASVIMGMAPLLGKDA------TIE  357 (626)
Q Consensus       295 ~vr~~a~~~l~~l~~~~~~~---------~~~~~l~~~l~~l~--~d~~~~vr~~~~~~l~~l~~~~~~~~------~~~  357 (626)
                      .+...+......+...+.+.         .+-..++..+....  .+.+...|.++.++++.+....+...      +.+
T Consensus       465 ~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~  544 (858)
T COG5215         465 FRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYD  544 (858)
T ss_pred             hHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence            55555555555555544322         11123333333221  24456789999999999887654321      111


Q ss_pred             h-------HHHHHHHhhcCC----CHHHHHHHHHhhHHHHhhhch--hhHHhhHHHHHHHHhcCC-ChHHHHHHHHHHHH
Q 006898          358 Q-------LLPIFLSLLKDE----FPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPL  423 (626)
Q Consensus       358 ~-------l~~~l~~~l~d~----~~~vr~~a~~~L~~~~~~~~~--~~~~~~i~~~l~~~~~~~-~~~~r~~~~~~l~~  423 (626)
                      .       .+....+.+.-+    ..++..+.+.-|..+....+.  +...+.++..+.++++.. ...+-.....+++.
T Consensus       545 ~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsa  624 (858)
T COG5215         545 YTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISA  624 (858)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHH
Confidence            1       122222222222    245666666667777766666  445567888888888776 44556667778888


Q ss_pred             HHHhhChhh--HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhhcCC--ChHHHHHHHH
Q 006898          424 LASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNP--HYLYRMTILR  497 (626)
Q Consensus       424 l~~~~~~~~--~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~~~--~~~vR~~a~~  497 (626)
                      +...+++.+  +.+.+.|.+.+.++-.+..|-..|+..++.+...+|.++  ....++..|.+.+.++  ...++-+.+.
T Consensus       625 l~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLS  704 (858)
T COG5215         625 LSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILS  704 (858)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHH
Confidence            888776544  557899999999988889999999999999999999874  3467788888888776  4668999999


Q ss_pred             HHHHhccccChHH--hhhcHHHHHhhhC
Q 006898          498 AISLLAPVMGSEI--TCSRLLPVVINAS  523 (626)
Q Consensus       498 ~l~~i~~~~~~~~--~~~~~l~~l~~~l  523 (626)
                      ++|.|+..+|..+  +.+.++-.+.+..
T Consensus       705 vFgDIAlaiga~F~~YL~~im~L~qqas  732 (858)
T COG5215         705 VFGDIALAIGANFESYLDMIMMLFQQAS  732 (858)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence            9999998888753  4566666555543

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.82  E-value=3e-18  Score=188.38  Aligned_cols=275  Identities=20%  Similarity=0.182  Sum_probs=195.8

Q ss_pred             HHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchH
Q 006898          203 IMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLV  282 (626)
Q Consensus       203 ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~  282 (626)
                      -++.|...++|+++.||..|+..|+.+.        .+..++.|...++|+++.||..++.+|+.+.....       -.
T Consensus       622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~--------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~-------~~  686 (897)
T PRK13800        622 SVAELAPYLADPDPGVRRTAVAVLTETT--------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP-------PA  686 (897)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHhhhc--------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC-------ch
Confidence            3456667778888888888888887754        24466777778888888888888888877754322       12


Q ss_pred             HHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHH
Q 006898          283 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI  362 (626)
Q Consensus       283 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~  362 (626)
                      +.+...++++++.||..++.+|+.+..  +.       ...+...+.|+++.||.+++.+++.+..           .+.
T Consensus       687 ~~L~~~L~~~d~~VR~~A~~aL~~~~~--~~-------~~~l~~~L~D~d~~VR~~Av~aL~~~~~-----------~~~  746 (897)
T PRK13800        687 PALRDHLGSPDPVVRAAALDVLRALRA--GD-------AALFAAALGDPDHRVRIEAVRALVSVDD-----------VES  746 (897)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhhcc--CC-------HHHHHHHhcCCCHHHHHHHHHHHhcccC-----------cHH
Confidence            456667778888888888888877542  11       1234456788888888888888877531           123


Q ss_pred             HHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHH
Q 006898          363 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM  442 (626)
Q Consensus       363 l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~  442 (626)
                      +...+.|+++.||..++.+|+.+...-      ....+.+..+++|+++.+|..++..|+.+...       ....+.+.
T Consensus       747 l~~~l~D~~~~VR~~aa~aL~~~~~~~------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~-------~~~~~~l~  813 (897)
T PRK13800        747 VAGAATDENREVRIAVAKGLATLGAGG------APAGDAVRALTGDPDPLVRAAALAALAELGCP-------PDDVAAAT  813 (897)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHhcccc------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-------chhHHHHH
Confidence            556788888888888888888775421      12356777888888888888888888775321       11234466


Q ss_pred             HHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhh
Q 006898          443 QWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINA  522 (626)
Q Consensus       443 ~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~  522 (626)
                      ..+.|+++.||..|+.+|+.+..        ...++.|..+++|+++.||..++.+|+.+.   +    .+...+.|...
T Consensus       814 ~aL~d~d~~VR~~Aa~aL~~l~~--------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~----~~~a~~~L~~a  878 (897)
T PRK13800        814 AALRASAWQVRQGAARALAGAAA--------DVAVPALVEALTDPHLDVRKAAVLALTRWP---G----DPAARDALTTA  878 (897)
T ss_pred             HHhcCCChHHHHHHHHHHHhccc--------cchHHHHHHHhcCCCHHHHHHHHHHHhccC---C----CHHHHHHHHHH
Confidence            77888888899888888876531        235677888888899999999999998872   1    13456677788


Q ss_pred             CCCCCchHHHHHHHHHHH
Q 006898          523 SKDRVPNIKFNVAKVLQS  540 (626)
Q Consensus       523 l~d~~~~vR~~a~~~l~~  540 (626)
                      ++|+++.||..|..+|..
T Consensus       879 l~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        879 LTDSDADVRAYARRALAH  896 (897)
T ss_pred             HhCCCHHHHHHHHHHHhh
Confidence            888899999999888863

>PRK09687 putative lyase; Provisional

Probab=99.82  E-value=1.8e-18  Score=162.16  Aligned_cols=252  Identities=18%  Similarity=0.159  Sum_probs=159.3

Q ss_pred             HHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHH
Q 006898          282 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLP  361 (626)
Q Consensus       282 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~  361 (626)
                      .+.+...+.|++..||..++.+|+.+..        +.+++.+..+++|+++.+|..++..|+.+...-.   .....+|
T Consensus        25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~--------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~---~~~~a~~   93 (280)
T PRK09687         25 DDELFRLLDDHNSLKRISSIRVLQLRGG--------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR---CQDNVFN   93 (280)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhcCc--------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc---chHHHHH
Confidence            3445556666677777777777666543        3345556666667777777777777776643110   0223455


Q ss_pred             HHHHh-hcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHH
Q 006898          362 IFLSL-LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL  440 (626)
Q Consensus       362 ~l~~~-l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~  440 (626)
                      .+..+ ++|+++.||..|+.+|+.++.... .+ ....++.+.....|++|++|..++.+++.+.        .+..++.
T Consensus        94 ~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~-~~-~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~--------~~~ai~~  163 (280)
T PRK09687         94 ILNNLALEDKSACVRASAINATGHRCKKNP-LY-SPKIVEQSQITAFDKSTNVRFAVAFALSVIN--------DEAAIPL  163 (280)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHhccccccc-cc-chHHHHHHHHHhhCCCHHHHHHHHHHHhccC--------CHHHHHH
Confidence            55544 567777777777777776643211 01 1234455556667777777777777775432        1235667


Q ss_pred             HHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhhcHHHHHh
Q 006898          441 CMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVI  520 (626)
Q Consensus       441 l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~  520 (626)
                      +...+.|+++.||..|+.+||.+.  .+    .....+.|...+.|+++.||..++.+++.+..        ...+|.|.
T Consensus       164 L~~~L~d~~~~VR~~A~~aLg~~~--~~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--------~~av~~Li  229 (280)
T PRK09687        164 LINLLKDPNGDVRNWAAFALNSNK--YD----NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD--------KRVLSVLI  229 (280)
T ss_pred             HHHHhcCCCHHHHHHHHHHHhcCC--CC----CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC--------hhHHHHHH
Confidence            777778888888888888887771  11    23466777777788888888888888876532        35677777


Q ss_pred             hhCCCCCchHHHHHHHHHHHHHhhhccchhhhcccchHHhhhcc-CCCcccccccccCchhHHHHHHHH
Q 006898          521 NASKDRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSFMLYLN-VNNFNVGFIFAAFPLVLFSCLALN  588 (626)
Q Consensus       521 ~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~l~~-d~d~~vr~~~~~~~~~~~a~~al~  588 (626)
                      ..+++++  +|..++.+||++...        ..+|.|. .+.+ ++|..|+.         .|.+++.
T Consensus       230 ~~L~~~~--~~~~a~~ALg~ig~~--------~a~p~L~-~l~~~~~d~~v~~---------~a~~a~~  278 (280)
T PRK09687        230 KELKKGT--VGDLIIEAAGELGDK--------TLLPVLD-TLLYKFDDNEIIT---------KAIDKLK  278 (280)
T ss_pred             HHHcCCc--hHHHHHHHHHhcCCH--------hHHHHHH-HHHhhCCChhHHH---------HHHHHHh
Confidence            7777755  677777777776542        5677777 6654 77777777         6666554

>PRK09687 putative lyase; Provisional

Probab=99.81  E-value=5.8e-18  Score=158.74  Aligned_cols=253  Identities=19%  Similarity=0.163  Sum_probs=180.3

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHH
Q 006898          165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP  244 (626)
Q Consensus       165 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~  244 (626)
                      .+.+...+.|++..||..++.+|+.+..        +.+.+.+..+++|+++.+|..++.+|+.+...-..   ....++
T Consensus        25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~--------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---~~~a~~   93 (280)
T PRK09687         25 DDELFRLLDDHNSLKRISSIRVLQLRGG--------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---QDNVFN   93 (280)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhcCc--------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---hHHHHH
Confidence            3455566788999999999998876532        45677778888889999999999999887642111   245677


Q ss_pred             HHHHh-cCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHH
Q 006898          245 VIVNF-SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPC  323 (626)
Q Consensus       245 ~l~~~-~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~  323 (626)
                      .+..+ .+|+++.||.+++.+||.++...  .......++.+...+.|+++.||..++.+|+.+..        +..++.
T Consensus        94 ~L~~l~~~D~d~~VR~~A~~aLG~~~~~~--~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--------~~ai~~  163 (280)
T PRK09687         94 ILNNLALEDKSACVRASAINATGHRCKKN--PLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND--------EAAIPL  163 (280)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHhcccccc--cccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--------HHHHHH
Confidence            77665 78889999999999888875321  11123456666677788888899888888876543        345677


Q ss_pred             HHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHH
Q 006898          324 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV  403 (626)
Q Consensus       324 l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~  403 (626)
                      |..+++|+++.||..++.+|+.+..  +    .+...+.+...+.|.++.||..|+.+|+.+..        ...+|.|.
T Consensus       164 L~~~L~d~~~~VR~~A~~aLg~~~~--~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--------~~av~~Li  229 (280)
T PRK09687        164 LINLLKDPNGDVRNWAAFALNSNKY--D----NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD--------KRVLSVLI  229 (280)
T ss_pred             HHHHhcCCCHHHHHHHHHHHhcCCC--C----CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC--------hhHHHHHH
Confidence            7788888888888888888888721  1    22456777888888888888888888887643        35777888


Q ss_pred             HHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhc-CCchHHHHHHHHHHHH
Q 006898          404 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKR  462 (626)
Q Consensus       404 ~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~-d~~~~VR~~a~~~l~~  462 (626)
                      +.++++++  |..++++++.+..        +..+|.+..+++ +++..|+..+.+++.+
T Consensus       230 ~~L~~~~~--~~~a~~ALg~ig~--------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        230 KELKKGTV--GDLIIEAAGELGD--------KTLLPVLDTLLYKFDDNEIITKAIDKLKR  279 (280)
T ss_pred             HHHcCCch--HHHHHHHHHhcCC--------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence            88777664  4556666665532        246777777775 7777788777777643

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.81  E-value=2.7e-18  Score=188.72  Aligned_cols=275  Identities=20%  Similarity=0.203  Sum_probs=219.4

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhH
Q 006898          242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHIL  321 (626)
Q Consensus       242 i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  321 (626)
                      .++.+...+.|+++.||..+++.|+.+.        ....++.+...++|++++||..|+.+|..+.+....       .
T Consensus       622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~--------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-------~  686 (897)
T PRK13800        622 SVAELAPYLADPDPGVRRTAVAVLTETT--------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP-------A  686 (897)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHhhhc--------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-------h
Confidence            4566777889999999999999999765        355788899999999999999999999888653322       2


Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHH
Q 006898          322 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA  401 (626)
Q Consensus       322 ~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~  401 (626)
                      +.+...++++++.||.+++..|+.+...  .       .+.+...|.|+++.||..|+.+|+.+..           .+.
T Consensus       687 ~~L~~~L~~~d~~VR~~A~~aL~~~~~~--~-------~~~l~~~L~D~d~~VR~~Av~aL~~~~~-----------~~~  746 (897)
T PRK13800        687 PALRDHLGSPDPVVRAAALDVLRALRAG--D-------AALFAAALGDPDHRVRIEAVRALVSVDD-----------VES  746 (897)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhhccC--C-------HHHHHHHhcCCCHHHHHHHHHHHhcccC-----------cHH
Confidence            4455667889999999999998887421  1       1245678999999999999999998621           134


Q ss_pred             HHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHH
Q 006898          402 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVL  481 (626)
Q Consensus       402 l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~  481 (626)
                      +...+.|+++.+|..+..+|..+...-.      ...+.+..+++|+++.||.+|+.+|+.+...       ..+.+.+.
T Consensus       747 l~~~l~D~~~~VR~~aa~aL~~~~~~~~------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~-------~~~~~~l~  813 (897)
T PRK13800        747 VAGAATDENREVRIAVAKGLATLGAGGA------PAGDAVRALTGDPDPLVRAAALAALAELGCP-------PDDVAAAT  813 (897)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHhccccc------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-------chhHHHHH
Confidence            5677899999999999999988754211      1256788899999999999999999887421       22345678


Q ss_pred             hhhcCCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccchhhhcccchHHhh
Q 006898          482 EMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSFML  561 (626)
Q Consensus       482 ~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~  561 (626)
                      ..+.|++|.+|..++.+++.+..        +...+.|..+++|+++.||..|+.+|+.+.   +    .+...+.|. .
T Consensus       814 ~aL~d~d~~VR~~Aa~aL~~l~~--------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~----~~~a~~~L~-~  877 (897)
T PRK13800        814 AALRASAWQVRQGAARALAGAAA--------DVAVPALVEALTDPHLDVRKAAVLALTRWP---G----DPAARDALT-T  877 (897)
T ss_pred             HHhcCCChHHHHHHHHHHHhccc--------cchHHHHHHHhcCCCHHHHHHHHHHHhccC---C----CHHHHHHHH-H
Confidence            88999999999999999997642        345688999999999999999999999962   1    135677888 8


Q ss_pred             hccCCCcccccccccCchhHHHHHHHHH
Q 006898          562 YLNVNNFNVGFIFAAFPLVLFSCLALNY  589 (626)
Q Consensus       562 l~~d~d~~vr~~~~~~~~~~~a~~al~~  589 (626)
                      .++|+|.+||.         .|..||+.
T Consensus       878 al~D~d~~Vr~---------~A~~aL~~  896 (897)
T PRK13800        878 ALTDSDADVRA---------YARRALAH  896 (897)
T ss_pred             HHhCCCHHHHH---------HHHHHHhh
Confidence            89999999999         99999864

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.80  E-value=8.3e-15  Score=140.59  Aligned_cols=384  Identities=14%  Similarity=0.106  Sum_probs=273.6

Q ss_pred             ccCCchHHHHHHHHHHhccccccCCcchhhcchHHHhhhhcC-cchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHh
Q 006898           56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTV-EETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLA  134 (626)
Q Consensus        56 ~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~-~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~  134 (626)
                      ...+++.+|..+...+.++..    .++.+.+.-+.+-++.+ +++..|..|.-+|+.-...-.++...+          
T Consensus        14 vLspD~n~rl~aE~ql~~l~~----~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~----------   79 (858)
T COG5215          14 VLSPDPNARLRAEAQLLELQS----GDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKG----------   79 (858)
T ss_pred             cCCCCCCccccHHHHHHHhcc----ccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHH----------
Confidence            457888889888888777644    23434333333444433 467889888777765444333322111          


Q ss_pred             cCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCC
Q 006898          135 AGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD  214 (626)
Q Consensus       135 ~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~  214 (626)
                               .     ...+-..+.+.++++....+..+..+.++.-..|++.++.++..--+...|+.+...+.....|+
T Consensus        80 ---------~-----~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~e  145 (858)
T COG5215          80 ---------C-----SQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDE  145 (858)
T ss_pred             ---------H-----HHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhcccc
Confidence                     1     11122245677888888889999999999999999999999998777788899998888888888


Q ss_pred             ch-hHHHHHHHHHHHhhcccCchhhh---hhhH-HHHHH-hcCCCCHHHHHHHHHHHHHHHHH----hCCCccccchHHH
Q 006898          215 QD-SVRLLAVEGCAALGKLLEPQDCV---AHIL-PVIVN-FSQDKSWRVRYMVANQLYELCEA----VGPEPTRMDLVPA  284 (626)
Q Consensus       215 ~~-~vr~~a~~~l~~l~~~~~~~~~~---~~i~-~~l~~-~~~d~~~~vR~~a~~~l~~l~~~----~~~~~~~~~l~~~  284 (626)
                      .+ .++..++.+++..++...++...   +.++ .++.. .-+.++..||-++..++..-...    +..+...+.++..
T Consensus       146 qp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqv  225 (858)
T COG5215         146 QPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQV  225 (858)
T ss_pred             CchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhhee
Confidence            66 67888999999999888774322   2222 22222 23556788999999998763322    2233334567777


Q ss_pred             HHHhcCCChHHHHHHHHHhHHHHHHhhC---hHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhh----------c
Q 006898          285 YVRLLRDNEAEVRIAAAGKVTKFCRILN---PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL----------G  351 (626)
Q Consensus       285 l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~----------~  351 (626)
                      .....+.++.+++.+++.++.++....-   +...-+.+..+..+..++++..|...+.+.+..+++.-          +
T Consensus       226 vceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~p  305 (858)
T COG5215         226 VCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLP  305 (858)
T ss_pred             eehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcc
Confidence            7777788889999999999988876321   11222333344456678999999999999998776421          1


Q ss_pred             HH---------HHHHhHHHHHHHhhc-------CCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHH
Q 006898          352 KD---------ATIEQLLPIFLSLLK-------DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL  415 (626)
Q Consensus       352 ~~---------~~~~~l~~~l~~~l~-------d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~  415 (626)
                      +.         .....++|.++++|.       ++++++..+|..+|.-+.+..|.... +.++..+.+-+++++|+-|.
T Consensus       306 e~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~-~pVl~FvEqni~~~~w~nre  384 (858)
T COG5215         306 EVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIM-RPVLGFVEQNIRSESWANRE  384 (858)
T ss_pred             cCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhH-HHHHHHHHHhccCchhhhHH
Confidence            00         013458899999885       24578999999999999988887655 45777777788999999999


Q ss_pred             HHHHHHHHHHHhhChhh---HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhC
Q 006898          416 AIIEYIPLLASQLGVGF---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG  468 (626)
Q Consensus       416 ~~~~~l~~l~~~~~~~~---~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~  468 (626)
                      +++.+++.+...-....   +.++.+|.+...+.|+.-.|+..+++|++.+...+.
T Consensus       385 aavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va  440 (858)
T COG5215         385 AAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVA  440 (858)
T ss_pred             HHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHH
Confidence            99999999887554433   346678888889999999999999999999987653

>PTZ00429 beta-adaptin; Provisional

Probab=99.80  E-value=7.8e-15  Score=153.86  Aligned_cols=491  Identities=12%  Similarity=0.079  Sum_probs=262.7

Q ss_pred             cHHHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhcccccc-ccCCchHHHHHHHHHHhccccccCCcchhhcch
Q 006898           10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL   88 (626)
Q Consensus        10 ~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~   88 (626)
                      .+..|-+.|.+.|...|..+++.+-.. ..+|.+.  ..+.+-+.. +..++.++|+.+--.+.++++.  .++..-..+
T Consensus        33 e~~ELr~~L~s~~~~~kk~alKkvIa~-mt~G~Dv--S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~--~pelalLaI  107 (746)
T PTZ00429         33 EGAELQNDLNGTDSYRKKAAVKRIIAN-MTMGRDV--SYLFVDVVKLAPSTDLELKKLVYLYVLSTARL--QPEKALLAV  107 (746)
T ss_pred             hHHHHHHHHHCCCHHHHHHHHHHHHHH-HHCCCCc--hHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc--ChHHHHHHH
Confidence            456666666666666666666555443 2333221  223222222 3445566666665555544431  122222233


Q ss_pred             HHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHH
Q 006898           89 PPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIY  168 (626)
Q Consensus        89 ~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l  168 (626)
                      +.+.+=+.|+++.+|-.|+++++.|..                                          ++..+.+.+.+
T Consensus       108 Ntl~KDl~d~Np~IRaLALRtLs~Ir~------------------------------------------~~i~e~l~~~l  145 (746)
T PTZ00429        108 NTFLQDTTNSSPVVRALAVRTMMCIRV------------------------------------------SSVLEYTLEPL  145 (746)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHcCCc------------------------------------------HHHHHHHHHHH
Confidence            344444455666666666655544321                                          22333444455


Q ss_pred             HHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHH-
Q 006898          169 TQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIV-  247 (626)
Q Consensus       169 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~-  247 (626)
                      .+++.|.++.||+.|+.++.++....+.-.....+++.+.+++.|+++.|...|+.+|..+.+..+..  .....+.+. 
T Consensus       146 kk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~--l~l~~~~~~~  223 (746)
T PTZ00429        146 RRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK--IESSNEWVNR  223 (746)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh--hHHHHHHHHH
Confidence            55666666666666666666665543321112235555666666666666666666666665443321  111122222 


Q ss_pred             --HhcCCCCHHHHHHHHHHHHHHHHHhCCC-ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHH---HHhhH
Q 006898          248 --NFSQDKSWRVRYMVANQLYELCEAVGPE-PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA---IQHIL  321 (626)
Q Consensus       248 --~~~~d~~~~vR~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~l~  321 (626)
                        ..+.+-+.--+....+.+   ....+.+ .....++..+...++..++.|..+|++++-.+....+++..   ...+-
T Consensus       224 Ll~~L~e~~EW~Qi~IL~lL---~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~  300 (746)
T PTZ00429        224 LVYHLPECNEWGQLYILELL---AAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVN  300 (746)
T ss_pred             HHHHhhcCChHHHHHHHHHH---HhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence              222222222333333333   2221111 11234666666666777777777777777666544332211   11222


Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHH
Q 006898          322 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA  401 (626)
Q Consensus       322 ~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~  401 (626)
                      +.+..+ .+.++.+|..+++.+..+....+ ..+... +..++-..+|+.. ||...+..|..++..-..    +.++..
T Consensus       301 ~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P-~lf~~~-~~~Ff~~~~Dp~y-IK~~KLeIL~~Lane~Nv----~~IL~E  372 (746)
T PTZ00429        301 TALLTL-SRRDAETQYIVCKNIHALLVIFP-NLLRTN-LDSFYVRYSDPPF-VKLEKLRLLLKLVTPSVA----PEILKE  372 (746)
T ss_pred             HHHHHh-hCCCccHHHHHHHHHHHHHHHCH-HHHHHH-HHhhhcccCCcHH-HHHHHHHHHHHHcCcccH----HHHHHH
Confidence            333444 34566778777777766665432 222222 4445555566654 777777777766543222    456667


Q ss_pred             HHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHH
Q 006898          402 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVL  481 (626)
Q Consensus       402 l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~  481 (626)
                      |.+...+.+..++..++.+++.++..+.  ...+.++..+..++.++.. +...++..+..+.+.+...    .+++.+.
T Consensus       373 L~eYa~d~D~ef~r~aIrAIg~lA~k~~--~~a~~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~~----~il~~L~  445 (746)
T PTZ00429        373 LAEYASGVDMVFVVEVVRAIASLAIKVD--SVAPDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPEL----LMLDTLV  445 (746)
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCccH----HHHHHHH
Confidence            7777777777888888888888875543  2345667777777766544 3345677777777665443    2445554


Q ss_pred             hhh---cCCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccchhhhcccchH
Q 006898          482 EMI---NNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFS  558 (626)
Q Consensus       482 ~~l---~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l  558 (626)
                      ..+   .-.++..|.+.++.+|..++.+..   ...++..+..-..+..+.||...+.+..++.-..+.. ....+...|
T Consensus       446 ~~~~~~~i~e~~AKaaiiWILGEy~~~I~~---a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~-~~~~l~~vL  521 (746)
T PTZ00429        446 TDYGADEVVEEEAKVSLLWMLGEYCDFIEN---GKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQG-MEPQLNRVL  521 (746)
T ss_pred             HhhcccccccHHHHHHHHHHHHhhHhhHhh---HHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHH-HHHHHHHHH
Confidence            432   124677888888888887765432   1334433344445567788888888888877664422 223344455


Q ss_pred             Hhhh-ccCCCccccc
Q 006898          559 FMLY-LNVNNFNVGF  572 (626)
Q Consensus       559 ~~~l-~~d~d~~vr~  572 (626)
                      . .+ ..+.|++||.
T Consensus       522 ~-~~t~~~~d~DVRD  535 (746)
T PTZ00429        522 E-TVTTHSDDPDVRD  535 (746)
T ss_pred             H-HHHhcCCChhHHH
Confidence            4 44 3456678888

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.78  E-value=3.8e-16  Score=165.45  Aligned_cols=520  Identities=18%  Similarity=0.182  Sum_probs=343.6

Q ss_pred             ccCCchHHHHHHHHHHhccccccCCcc----hhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHH
Q 006898           56 NNDDDDEVLLAMAEELGVFIPYVGGVE----HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVK  131 (626)
Q Consensus        56 ~~~~~~~vr~~~~~~l~~~~~~~~~~~----~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~  131 (626)
                      +-+++|..|++...+|-.++.++|...    ..+.+...+..+++|.++-+...|.+.++-+.+.-+.......+-.++.
T Consensus       827 ~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~LV~sL~~  906 (1702)
T KOG0915|consen  827 LTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKKSLVDSLVN  906 (1702)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHHHHHHHHHH
Confidence            567899999999999988888888432    3455667788899999999999999999877664333222222233344


Q ss_pred             HHhcCCccchhH------HHhhHh------------HHhcCCCChHHHHHHHHHHHHhcCC-CCHHHHHHHHHhHHHHHH
Q 006898          132 RLAAGEWFTARV------SACGLF------------HIAYPSAPDILKTELRSIYTQLCQD-DMPMVRRSAASNLGKFAA  192 (626)
Q Consensus       132 ~l~~~~~~~~r~------~a~~~l------------~~~~~~~~~~~~~~l~~~l~~l~~d-~~~~vR~~a~~~l~~l~~  192 (626)
                      .++.++......      ..-..+            -+++.-.++-.+++++--|.++.++ ..|.-|+.|+..++.++.
T Consensus       907 tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~  986 (1702)
T KOG0915|consen  907 TLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAK  986 (1702)
T ss_pred             HHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhhchHHHHH
Confidence            444332110000      000111            1111111122345677777777765 478999999999999998


Q ss_pred             hhCc--cchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc--hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006898          193 TVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYEL  268 (626)
Q Consensus       193 ~~~~--~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l  268 (626)
                      ..+.  +.+...++|.+.+.-.|++..|+.+....+..+...-..  +.+.++|+.-+...+.+..|+||++++-++..+
T Consensus       987 ~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dL 1066 (1702)
T KOG0915|consen  987 QAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADL 1066 (1702)
T ss_pred             HHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence            8765  466778999999999999999999999999888765433  567788888888889999999999999999998


Q ss_pred             HHHhCCCccccchHHH---HHHhcCCChHHHHHHHHHhHHHHHHhh---C-------hHHHHHhhHHHHHH-hccCCCHH
Q 006898          269 CEAVGPEPTRMDLVPA---YVRLLRDNEAEVRIAAAGKVTKFCRIL---N-------PELAIQHILPCVKE-LSSDSSQH  334 (626)
Q Consensus       269 ~~~~~~~~~~~~l~~~---l~~~l~d~~~~vr~~a~~~l~~l~~~~---~-------~~~~~~~l~~~l~~-l~~d~~~~  334 (626)
                      ...-+.+...+.+..+   +...+.|-...||.++-.+...+++.+   .       ...+...++|.+.. ..-++-..
T Consensus      1067 l~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~e 1146 (1702)
T KOG0915|consen 1067 LQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNE 1146 (1702)
T ss_pred             HcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHH
Confidence            8765544444444444   444556766889988766665555433   1       22456788888764 33467789


Q ss_pred             HHHHHHHHHHhhhhhhcHH--HHHHhHHHHHHHhhcCCCHHH-------------------HHHHH------HhhHHHHh
Q 006898          335 VRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKDEFPDV-------------------RLNII------SKLDQVNQ  387 (626)
Q Consensus       335 vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~v-------------------r~~a~------~~L~~~~~  387 (626)
                      ||...+..+..+++..|..  .+.+.++|.+...+..-++.|                   |..++      ++++.+.+
T Consensus      1147 vr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~ 1226 (1702)
T KOG0915|consen 1147 VRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCIN 1226 (1702)
T ss_pred             HHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHH
Confidence            9999999999999887763  356678888877776544333                   33322      23344444


Q ss_pred             hhchhhHHhhHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 006898          388 VIGIDLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLA  464 (626)
Q Consensus       388 ~~~~~~~~~~i~~~l~~~~~~~-~~~~r~~~~~~l~~l~~~~~~~~--~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~  464 (626)
                      .++...+ ++++|.+.++++.. .-..|..+..++..++..+|.+.  +...++..++..+.|.+..+|.+-+.+.|.+.
T Consensus      1227 ~iD~~vL-eelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~ 1305 (1702)
T KOG0915|consen 1227 YIDISVL-EELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLA 1305 (1702)
T ss_pred             hhhHHHH-HHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHH
Confidence            4444444 67899999888654 56778889999999998887653  56778999999999999999999999999999


Q ss_pred             HHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccCh--HHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHH
Q 006898          465 EEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS--EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI  542 (626)
Q Consensus       465 ~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~--~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~  542 (626)
                      ..-.++.....+-..+...+.+.+. .+..++..+.+|+.+...  +.+...++|.+.-..++.    -..-...+.++.
T Consensus      1306 k~Ss~dq~qKLie~~l~~~l~k~es-~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee----~Ka~q~Lw~dvW 1380 (1702)
T KOG0915|consen 1306 KFSSPDQMQKLIETLLADLLGKDES-LKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEE----EKANQELWNDVW 1380 (1702)
T ss_pred             hcCChHHHHHHHHHHHHHHhccCCC-ccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHH----HHHHHHHHHHHH
Confidence            8877654333333334444544332 224445555555544332  235677888777666554    112223333333


Q ss_pred             hhhcc--c-----hhhhcccchHHhhhccCCCcccccccccCchhHHHHHHHHHHH
Q 006898          543 PIVDQ--S-----VSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCH  591 (626)
Q Consensus       543 ~~~~~--~-----~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~  591 (626)
                      ..+-+  .     .....+.+... ...++..+.+|.         .+..++..+.
T Consensus      1381 ~e~vsggagtvrl~~~eiLn~ice-ni~nn~~w~lr~---------q~Akai~~~a 1426 (1702)
T KOG0915|consen 1381 AELVSGGAGTVRLYLLEILNLICE-NITNNESWKLRK---------QAAKAIRVIA 1426 (1702)
T ss_pred             HHhCCCCcchhhhhHHHHHHHHHH-HhccchHHHHHH---------HHHHHHHHHc
Confidence            22211  1     12233444444 667777788888         7777766654

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.77  E-value=5e-16  Score=148.79  Aligned_cols=391  Identities=16%  Similarity=0.177  Sum_probs=300.6

Q ss_pred             HHHhcCCCCHHHHHHHHHhHHHHHHhhCccch---hhhHHH-HHHHhhcCCchhHHHHHHHHHHHhhcccCc--hhhhhh
Q 006898          168 YTQLCQDDMPMVRRSAASNLGKFAATVEPAHL---KTDIMS-IFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QDCVAH  241 (626)
Q Consensus       168 l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~---~~~ll~-~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~  241 (626)
                      +...+.|...+-|++++..+..++..+-...-   ..+++. ............-|++++-.+.+.+-..|.  ..+...
T Consensus         5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~   84 (675)
T KOG0212|consen    5 IARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEK   84 (675)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHH
Confidence            34567888889999999999999887655433   333444 333445556667788888888888777766  347888


Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChH----H
Q 006898          242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----L  315 (626)
Q Consensus       242 i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~  315 (626)
                      ++|.+...++|.+..||..+++.+..+++....+.  +.+.+...+.++..|.+..||.+ ++.+..+.+.+..+    .
T Consensus        85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~-aeLLdRLikdIVte~~~tF  163 (675)
T KOG0212|consen   85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGG-AELLDRLIKDIVTESASTF  163 (675)
T ss_pred             hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccH-HHHHHHHHHHhcccccccc
Confidence            89999999999999999999999999999876553  34578888889999999888865 46677766655322    3


Q ss_pred             HHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHH--HHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhh
Q 006898          316 AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL  393 (626)
Q Consensus       316 ~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~  393 (626)
                      -.+.++|.+.+-+...++..|..+.+++..+-..-+-+.  +.+.+++.++++|.|+..+||..+-.+++++...+..+.
T Consensus       164 sL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P  243 (675)
T KOG0212|consen  164 SLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSP  243 (675)
T ss_pred             CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCc
Confidence            357889999999999999999999999998876655443  467899999999999999999999999998887664322


Q ss_pred             ---HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhH--HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHHHHh
Q 006898          394 ---LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLQDKVY-SIRDAAANNLKRLAEEF  467 (626)
Q Consensus       394 ---~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~--~~~l~p~l~~~l~d~~~-~VR~~a~~~l~~l~~~~  467 (626)
                         -...+++.+..-+.+++..++..++.++..+.+..|....  .+.++..++.++.|++. .++..+...-+.+...+
T Consensus       244 ~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~  323 (675)
T KOG0212|consen  244 SSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLV  323 (675)
T ss_pred             cccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHH
Confidence               1245777777778899999999999999999988877643  35666777778888777 57877776665665554


Q ss_pred             ChHH-----HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHH--hhhcHHHHHhhhCCCCCchHHHHHHHHHHH
Q 006898          468 GPEW-----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRVPNIKFNVAKVLQS  540 (626)
Q Consensus       468 ~~~~-----~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~--~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~  540 (626)
                      +.+.     -...++..+.+.+.+....+|.+++.++..+-...+.+.  +.+.+.+.|++.+.|++++|-..+...+..
T Consensus       324 s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~  403 (675)
T KOG0212|consen  324 SSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLAS  403 (675)
T ss_pred             hhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHH
Confidence            4332     225788888889999999999999999999988777664  456789999999999999999999999999


Q ss_pred             HHhhhccchhhhcccchHH
Q 006898          541 LIPIVDQSVSTFSVSPFSF  559 (626)
Q Consensus       541 i~~~~~~~~~~~~i~~~l~  559 (626)
                      ++..-....+.+.+...|.
T Consensus       404 i~~s~~~~~~~~fl~sLL~  422 (675)
T KOG0212|consen  404 ICSSSNSPNLRKFLLSLLE  422 (675)
T ss_pred             HhcCcccccHHHHHHHHHH
Confidence            8865433223333333333

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.77  E-value=4.1e-15  Score=142.61  Aligned_cols=415  Identities=15%  Similarity=0.115  Sum_probs=299.3

Q ss_pred             hhhcCcchHHHHHHHHHHHHHHhhcCh----hhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCCh---HHHHHHH
Q 006898           93 TLCTVEETCVRDKAVESLCRIGSQMRE----SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD---ILKTELR  165 (626)
Q Consensus        93 ~l~~~~~~~vR~~a~~~l~~i~~~~~~----~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~---~~~~~l~  165 (626)
                      +.++|.-.+-|++|+.-+..+.+.+-.    ..+.+.+-.+......+.+...|.++.-.++...-..+.   .+.+.++
T Consensus         7 r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv   86 (675)
T KOG0212|consen    7 RGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIV   86 (675)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhh
Confidence            344566667788888788777775533    222222333455555555555666544444443322322   3788899


Q ss_pred             HHHHHhcCCCCHHHHHHHHHhHHHHHHhhCcc--chhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCch----hhh
Q 006898          166 SIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ----DCV  239 (626)
Q Consensus       166 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~  239 (626)
                      +....+++|++.+||..||+++-++++....+  .+.+++...+.++..|.+..||. +.+.+..+.+....+    -..
T Consensus        87 ~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVte~~~tFsL  165 (675)
T KOG0212|consen   87 PPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVTESASTFSL  165 (675)
T ss_pred             HHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhccccccccCH
Confidence            99999999999999999999999999988764  34578889999999999999986 556777776655432    246


Q ss_pred             hhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChH--H
Q 006898          240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--L  315 (626)
Q Consensus       240 ~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~  315 (626)
                      +.++|.+...+.+.++.+|...+..+..+-..-+-+.  +...+++.+.++++|+.++||.-+-.+++.+...+..+  .
T Consensus       166 ~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s  245 (675)
T KOG0212|consen  166 PEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS  245 (675)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc
Confidence            7899999999999999999999988876654322221  24578999999999999999999999998888866432  1


Q ss_pred             -HHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHH--HHhHHHHHHHhhcCCCH-HHHHHHHHhhHHHHhhhch
Q 006898          316 -AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT--IEQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQVIGI  391 (626)
Q Consensus       316 -~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~-~vr~~a~~~L~~~~~~~~~  391 (626)
                       -.+..++.+..-+.++++.++..++.++..+.+..|.+..  ...++..++.++.|.++ .++..+...=+.+....+.
T Consensus       246 ~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~  325 (675)
T KOG0212|consen  246 MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSS  325 (675)
T ss_pred             cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhh
Confidence             1245677777777889999999999999999998887643  44566677777777766 4665555443344433333


Q ss_pred             hhH-----HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhH--HHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 006898          392 DLL-----SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLQDKVYSIRDAAANNLKRLA  464 (626)
Q Consensus       392 ~~~-----~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~--~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~  464 (626)
                      +..     ...++..+.+.+.+.....|.+++.++..+....+.+.+  .+.+.+.++..+.|+...|-..+...++.++
T Consensus       326 ~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~  405 (675)
T KOG0212|consen  326 ERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASIC  405 (675)
T ss_pred             hhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHh
Confidence            221     246888888999999999999999999999888776654  3678999999999999999999999999999


Q ss_pred             HHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChH
Q 006898          465 EEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE  509 (626)
Q Consensus       465 ~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~  509 (626)
                      ..-... ....++..+.+++..+..-.+..+...+.+++-.+.++
T Consensus       406 ~s~~~~-~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE  449 (675)
T KOG0212|consen  406 SSSNSP-NLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAE  449 (675)
T ss_pred             cCcccc-cHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHH
Confidence            764432 23445666666666655555555555666666555554

>PTZ00429 beta-adaptin; Provisional

Probab=99.72  E-value=1.1e-12  Score=137.80  Aligned_cols=475  Identities=11%  Similarity=0.050  Sum_probs=314.7

Q ss_pred             CCCCCCcccHHHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhccccccccCCchHHHHHHHHHHhccccccCCc
Q 006898            2 AMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGV   81 (626)
Q Consensus         2 ~~~~~~~~~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~   81 (626)
                      ..|.|.-.-....+..+.++|...|....--+...+... ++...--+-.+.+++.|++|.+|..+.+.++.+.    .+
T Consensus        61 t~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~-pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir----~~  135 (746)
T PTZ00429         61 TMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQ-PEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIR----VS  135 (746)
T ss_pred             HCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC----cH
Confidence            344444444556777899999999998887777775432 3322222223334488999999999999999763    36


Q ss_pred             chhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChH--
Q 006898           82 EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--  159 (626)
Q Consensus        82 ~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~--  159 (626)
                      ...+.+.+.+.+.++|+++.||+.|+-|+.++....+.-.....+.+.+.+++.|.++.|...|...+..+....+..  
T Consensus       136 ~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~  215 (746)
T PTZ00429        136 SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE  215 (746)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH
Confidence            677888888999999999999999999999998765532223457778888899999999999999998887665432  


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc-cchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchh-
Q 006898          160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD-  237 (626)
Q Consensus       160 ~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~-  237 (626)
                      .....+..++..+.+-+++-+-..++.|..   ..+. +.....++..+...+++.++.|...|++++-.+.....++. 
T Consensus       216 l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~---y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~  292 (746)
T PTZ00429        216 SSNEWVNRLVYHLPECNEWGQLYILELLAA---QRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELI  292 (746)
T ss_pred             HHHHHHHHHHHHhhcCChHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHH
Confidence            112233334444455556666666666643   2222 22234577778888888899999999999988876543321 


Q ss_pred             --hhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHH
Q 006898          238 --CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL  315 (626)
Q Consensus       238 --~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~  315 (626)
                        ....+.+.+..+ .+.++++|..+...+..+....+. .+..+ +..|.-..+|+. .+|...+..|..++..-..  
T Consensus       293 ~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P~-lf~~~-~~~Ff~~~~Dp~-yIK~~KLeIL~~Lane~Nv--  366 (746)
T PTZ00429        293 ERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFPN-LLRTN-LDSFYVRYSDPP-FVKLEKLRLLLKLVTPSVA--  366 (746)
T ss_pred             HHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCHH-HHHHH-HHhhhcccCCcH-HHHHHHHHHHHHHcCcccH--
Confidence              112233434444 456778999999998877765431 11111 333444456765 5888888888777653333  


Q ss_pred             HHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHH
Q 006898          316 AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS  395 (626)
Q Consensus       316 ~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~  395 (626)
                        +.++.-+.+...+.+..++..++++++.++..++.  ..+.++..+..++.+... +...++..+..+.+.....   
T Consensus       367 --~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~--~a~~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~~---  438 (746)
T PTZ00429        367 --PEILKELAEYASGVDMVFVVEVVRAIASLAIKVDS--VAPDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPEL---  438 (746)
T ss_pred             --HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH--HHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCccH---
Confidence              44566666777788999999999999999876643  466788888888876544 3345677777776655432   


Q ss_pred             hhHHHHHHHHh---cCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHH
Q 006898          396 QSLLPAIVELA---EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA  472 (626)
Q Consensus       396 ~~i~~~l~~~~---~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~  472 (626)
                       .+++.+....   .-.+...|.+.+-.++..++....   ...++..+..-+.+....||.+...+..++.-....+ .
T Consensus       439 -~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~---a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~-~  513 (746)
T PTZ00429        439 -LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN---GKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQG-M  513 (746)
T ss_pred             -HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh---HHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHH-H
Confidence             2445554432   123567788878888877664432   2234444455556778899999998888887765433 2


Q ss_pred             hhhhHHHHHh-hhc-CCChHHHHHHHHHHHHhcc
Q 006898          473 MQHITPQVLE-MIN-NPHYLYRMTILRAISLLAP  504 (626)
Q Consensus       473 ~~~il~~l~~-~l~-~~~~~vR~~a~~~l~~i~~  504 (626)
                       ...+..+.+ +.+ +.|+++|-.|.....-+..
T Consensus       514 -~~~l~~vL~~~t~~~~d~DVRDRA~~Y~rLLs~  546 (746)
T PTZ00429        514 -EPQLNRVLETVTTHSDDPDVRDRAFAYWRLLSK  546 (746)
T ss_pred             -HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHcC
Confidence             334444553 334 5788999888876665543

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.71  E-value=4.4e-13  Score=142.75  Aligned_cols=443  Identities=17%  Similarity=0.155  Sum_probs=291.0

Q ss_pred             hHHHHHHHHHHHHHHhhcCh--hhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCC---hHHHHHHHHHHHHhcCC
Q 006898          100 TCVRDKAVESLCRIGSQMRE--SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP---DILKTELRSIYTQLCQD  174 (626)
Q Consensus       100 ~~vR~~a~~~l~~i~~~~~~--~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~---~~~~~~l~~~l~~l~~d  174 (626)
                      +.-|..|+-.++.|++..+.  +.....++|-+.+.--|++..++.+-..+...+.....   +++..+|+.-++..+.+
T Consensus       971 wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~ 1050 (1702)
T KOG0915|consen  971 WNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTS 1050 (1702)
T ss_pred             hhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccc
Confidence            44566777777777776543  23344577877777788888888888888887766533   35778899999999999


Q ss_pred             CCHHHHHHHHHhHHHHHHhhCccchhh---hHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc----------hhhhhh
Q 006898          175 DMPMVRRSAASNLGKFAATVEPAHLKT---DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----------QDCVAH  241 (626)
Q Consensus       175 ~~~~vR~~a~~~l~~l~~~~~~~~~~~---~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----------~~~~~~  241 (626)
                      ..|+||.++|.++..+.+.-+.+.+.+   ++...+.+.+.|-.+.||.+|-++...+++.+-.          ......
T Consensus      1051 kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~ 1130 (1702)
T KOG0915|consen 1051 KEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDI 1130 (1702)
T ss_pred             hhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHH
Confidence            999999999999999998766554444   4445556667777889999887776666654321          345677


Q ss_pred             hHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHhCCCcc--ccchHHHHHHhcCCChHHH-------------------HHH
Q 006898          242 ILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLRDNEAEV-------------------RIA  299 (626)
Q Consensus       242 i~~~l~~-~~~d~~~~vR~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~v-------------------r~~  299 (626)
                      ++|++.. ..-++...||+.++..+..+++..|+..-  ..+++|.++...+.-++.|                   |..
T Consensus      1131 iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s 1210 (1702)
T KOG0915|consen 1131 ILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRAS 1210 (1702)
T ss_pred             HHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHh
Confidence            8888753 34477889999999999999999887643  3478888888776555443                   333


Q ss_pred             HHHh------HHHHHHhhChHHHHHhhHHHHHHhccC-CCHHHHHHHHHHHHhhhhhhcHH--HHHHhHHHHHHHhhcCC
Q 006898          300 AAGK------VTKFCRILNPELAIQHILPCVKELSSD-SSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKDE  370 (626)
Q Consensus       300 a~~~------l~~l~~~~~~~~~~~~l~~~l~~l~~d-~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~  370 (626)
                      +++.      +..+...++.. +.++++|.+.++... -.-..|..++..+..+...+|.+  .+...++..++..++|.
T Consensus      1211 ~aksspmmeTi~~ci~~iD~~-vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dR 1289 (1702)
T KOG0915|consen 1211 AAKSSPMMETINKCINYIDIS-VLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDR 1289 (1702)
T ss_pred             hhcCCcHHHHHHHHHHhhhHH-HHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccc
Confidence            2222      22222222332 357788888877653 33456778888888888877765  45678999999999999


Q ss_pred             CHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh--hhHHHHHHHHHHHHhcCC
Q 006898          371 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLQDK  448 (626)
Q Consensus       371 ~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~--~~~~~~l~p~l~~~l~d~  448 (626)
                      ++.+|++.+.+.+.+...-.++...+.+-..+..++.+.+.. +..++..+..+++....  +...+.++|..+-..++.
T Consensus      1290 Nesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~-~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee 1368 (1702)
T KOG0915|consen 1290 NESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESL-KSISCATISNIANYSQEMLKNYASAILPLIFLAMHEE 1368 (1702)
T ss_pred             cHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCc-cchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHH
Confidence            999999999999999988877766443444444555443321 13333333334433221  123467899877766554


Q ss_pred             chHHHHHHHHHHHHHHHHhCh--HHHhhhhHHHH-HhhhcCCChHHHHHHHHHHHHhccccCh---HHhhhcHHHHHhhh
Q 006898          449 VYSIRDAAANNLKRLAEEFGP--EWAMQHITPQV-LEMINNPHYLYRMTILRAISLLAPVMGS---EITCSRLLPVVINA  522 (626)
Q Consensus       449 ~~~VR~~a~~~l~~l~~~~~~--~~~~~~il~~l-~~~l~~~~~~vR~~a~~~l~~i~~~~~~---~~~~~~~l~~l~~~  522 (626)
                      +.+...-=-+.|..++..-..  .....+++..+ .+..++..|..|..++.++..++.....   .+..-.+.+.+...
T Consensus      1369 ~Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~sss~~~p~ilkl~~~ll~~ 1448 (1702)
T KOG0915|consen 1369 EKANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLSSSAPIPVILKLALSLLDT 1448 (1702)
T ss_pred             HHHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccccccCChHHHHHHHHHHHHH
Confidence            222222112222222221111  11234444444 4456777899999999999988875432   23455666777777


Q ss_pred             CCCCCchHHHHHHHHHHHHHhh
Q 006898          523 SKDRVPNIKFNVAKVLQSLIPI  544 (626)
Q Consensus       523 l~d~~~~vR~~a~~~l~~i~~~  544 (626)
                      +....++-+....+++......
T Consensus      1449 L~GRiwdGKe~iLKAl~~~~~a 1470 (1702)
T KOG0915|consen 1449 LNGRIWDGKEEILKALASAFEA 1470 (1702)
T ss_pred             hhccccccHHHHHHHHHHHHHH
Confidence            7777777666666666644433

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.70  E-value=1.6e-15  Score=157.26  Aligned_cols=282  Identities=18%  Similarity=0.176  Sum_probs=173.3

Q ss_pred             CHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc------hhhhhhhHHHHHHh
Q 006898          176 MPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP------QDCVAHILPVIVNF  249 (626)
Q Consensus       176 ~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~------~~~~~~i~~~l~~~  249 (626)
                      ...-|.+|++.|..++.....+...+.++|++..++.|++..||..|+.++..+...+.+      ..+.++++|.+..+
T Consensus       436 ~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l  515 (1431)
T KOG1240|consen  436 TIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHL  515 (1431)
T ss_pred             cchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhh
Confidence            356778888889999888888888889999999999999999999999988887765543      34678899999999


Q ss_pred             cCC-CCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHH-----hcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHH
Q 006898          250 SQD-KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVR-----LLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPC  323 (626)
Q Consensus       250 ~~d-~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-----~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~  323 (626)
                      ..| ....||.+.+.+|+.++...-      .++..-..     +++|.+.+       +.+.-....+...+.+.+-..
T Consensus       516 ~~d~~~~~vRiayAsnla~LA~tA~------rFle~~q~~~~~g~~n~~nse-------t~~~~~~~~~~~~L~~~V~~~  582 (1431)
T KOG1240|consen  516 LNDSSAQIVRIAYASNLAQLAKTAY------RFLELTQELRQAGMLNDPNSE-------TAPEQNYNTELQALHHTVEQM  582 (1431)
T ss_pred             hccCccceehhhHHhhHHHHHHHHH------HHHHHHHHHHhcccccCcccc-------cccccccchHHHHHHHHHHHH
Confidence            888 667799999999998886421      01110000     12232222       000000000111122333344


Q ss_pred             HHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHH
Q 006898          324 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV  403 (626)
Q Consensus       324 l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~  403 (626)
                      +..++.|+.+.||+++.+.+..++..||++...+.+++++...|+|.|+..|.+....+..++-.+|.....+.++|.+.
T Consensus       583 v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~  662 (1431)
T KOG1240|consen  583 VSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQ  662 (1431)
T ss_pred             HHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHH
Confidence            45556666666666666666666666666666666666666666666666666666666665555555544455666666


Q ss_pred             HHhcCCChHHHHHHHHHHHHHHHhhC-hhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChH
Q 006898          404 ELAEDRHWRVRLAIIEYIPLLASQLG-VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE  470 (626)
Q Consensus       404 ~~~~~~~~~~r~~~~~~l~~l~~~~~-~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~  470 (626)
                      +.+.|+...|-..++.++..+.+.-- .+...-.++.....++-.++.+||.+++..+..+...++..
T Consensus       663 Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~a  730 (1431)
T KOG1240|consen  663 QGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAA  730 (1431)
T ss_pred             HhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhh
Confidence            66666666666666666666554211 11112234444455555666666666666666666555443

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.69  E-value=2.8e-15  Score=155.52  Aligned_cols=302  Identities=21%  Similarity=0.242  Sum_probs=226.1

Q ss_pred             HHHHHHHhhcC-CchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC------C
Q 006898          203 IMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP------E  275 (626)
Q Consensus       203 ll~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~------~  275 (626)
                      +++.+...+.. .....|..|++.+..++.....+...+.++|++..++.|+...||..|+.++..+.....+      .
T Consensus       423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~dan  502 (1431)
T KOG1240|consen  423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDAN  502 (1431)
T ss_pred             eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccch
Confidence            44444444433 2456778899999999998888888999999999999999999999999988887665432      2


Q ss_pred             ccccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHH--hccCCCHHHHHHHHHHHHhhhhhhcH
Q 006898          276 PTRMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKE--LSSDSSQHVRSALASVIMGMAPLLGK  352 (626)
Q Consensus       276 ~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~--l~~d~~~~vr~~~~~~l~~l~~~~~~  352 (626)
                      .+.+.++|.+..++.| ....||.+-+.+|+.+++....-.   .+-..+..  ..++++..          ...+..+.
T Consensus       503 iF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFl---e~~q~~~~~g~~n~~nse----------t~~~~~~~  569 (1431)
T KOG1240|consen  503 IFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFL---ELTQELRQAGMLNDPNSE----------TAPEQNYN  569 (1431)
T ss_pred             hhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHH---HHHHHHHhcccccCcccc----------cccccccc
Confidence            4677899999999988 556788888889988887321110   00011111  12333322          00000000


Q ss_pred             ---HHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC
Q 006898          353 ---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG  429 (626)
Q Consensus       353 ---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~  429 (626)
                         ......+-.....++.|+.+.||++.++.+..++..+|.+.-.+.+++++..+++|++|+.|.+..+.+..++-..|
T Consensus       570 ~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG  649 (1431)
T KOG1240|consen  570 TELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG  649 (1431)
T ss_pred             hHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe
Confidence               01122234456778899999999999999999999999998888899999999999999999999999998888888


Q ss_pred             hhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh-HHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccCh
Q 006898          430 VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP-EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS  508 (626)
Q Consensus       430 ~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~-~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~  508 (626)
                      .....+.++|.+.+.+.|.++.|-..|..++..+++..-- ....-+++..+..++-+||..+|.+++..+..+.+.++.
T Consensus       650 ~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~  729 (1431)
T KOG1240|consen  650 WRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSA  729 (1431)
T ss_pred             eeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhh
Confidence            8888899999999999999999999999999999985321 123455677777788999999999999999999988876


Q ss_pred             HHhhhcHHH
Q 006898          509 EITCSRLLP  517 (626)
Q Consensus       509 ~~~~~~~l~  517 (626)
                      ....-.++|
T Consensus       730 advyc~l~P  738 (1431)
T KOG1240|consen  730 ADVYCKLMP  738 (1431)
T ss_pred             hhheEEeeh
Confidence            544333333

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=1.8e-13  Score=133.75  Aligned_cols=336  Identities=14%  Similarity=0.127  Sum_probs=240.4

Q ss_pred             hhcCCchhHHHHHHHHHHHhhcccCc----hhhhhhhHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHhCC---Cccccch
Q 006898          210 LTQDDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGP---EPTRMDL  281 (626)
Q Consensus       210 l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~i~~~l~~~~-~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l  281 (626)
                      .+..++...+..+...+..+...-..    +.+...++|.+..++ .+.++.++..++.+|..++..-..   .......
T Consensus        74 ~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~aga  153 (514)
T KOG0166|consen   74 ALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGA  153 (514)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCc
Confidence            33333344444444444444332221    223445677776666 466788888888888888864321   1234568


Q ss_pred             HHHHHHhcCCChHHHHHHHHHhHHHHHHhhCh---HHHHHhhHHHHHHhccCCCH-HHHHHHHHHHHhhhhhhcH---HH
Q 006898          282 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---ELAIQHILPCVKELSSDSSQ-HVRSALASVIMGMAPLLGK---DA  354 (626)
Q Consensus       282 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d~~~-~vr~~~~~~l~~l~~~~~~---~~  354 (626)
                      +|.|..++.+++.+|++.|+.+|+.++..-..   ..+...+++.+..++...+. ...+.+..++..++..-.+   -.
T Consensus       154 vp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~  233 (514)
T KOG0166|consen  154 VPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFD  233 (514)
T ss_pred             hHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHH
Confidence            89999999999999999999999988753221   12233445555555554443 6777788899999876521   13


Q ss_pred             HHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhh---HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChh
Q 006898          355 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL---LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG  431 (626)
Q Consensus       355 ~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~---~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~  431 (626)
                      ....++|.+..++.+.|++|..-|+.+++++...-....   +...+.|.+.+++.+.+..++..++++++.++.+-+..
T Consensus       234 ~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~Q  313 (514)
T KOG0166|consen  234 VVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQ  313 (514)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHH
Confidence            456789999999999999999999999999875432211   22457899999999999999999999999987654422


Q ss_pred             ---hHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHhChH---HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhcc
Q 006898          432 ---FFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLEMINNPHYLYRMTILRAISLLAP  504 (626)
Q Consensus       432 ---~~~~~l~p~l~~~l~-d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~  504 (626)
                         ......+|.+..++. .+...+|..|+++++.++..-...   .+...++|.|..++...++++|..|+++++++..
T Consensus       314 Tq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts  393 (514)
T KOG0166|consen  314 TQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTS  393 (514)
T ss_pred             HHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcc
Confidence               234567888989887 566669999999999998732111   2346789999999999999999999999999987


Q ss_pred             ccChHH----hhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhh
Q 006898          505 VMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV  545 (626)
Q Consensus       505 ~~~~~~----~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~  545 (626)
                      ...++.    +...+++.+..++.-++..+-..+..++..|....
T Consensus       394 ~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~  438 (514)
T KOG0166|consen  394 SGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVG  438 (514)
T ss_pred             cCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHH
Confidence            666542    23457888888888788888888888888877654

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=6.8e-13  Score=120.88  Aligned_cols=376  Identities=17%  Similarity=0.133  Sum_probs=256.7

Q ss_pred             ccHHHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhccccccccCCchHHHHHHHHHHhccccccCCcchhhc--
Q 006898            9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHV--   86 (626)
Q Consensus         9 ~~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~--   86 (626)
                      .|+..+.---.|++.....+|.-+...+....--+..++..-|.+..+.+.++.+..++...+|+++-..+.....-.  
T Consensus        47 ~plraltvL~ySDnlnlqrsaalafAeitek~vr~Vsres~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~  126 (550)
T KOG4224|consen   47 SPLRALTVLKYSDNLNLQRSAALAFAEITEKGVRRVSRESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLL  126 (550)
T ss_pred             CccchheeeeeccccccchHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEecc
Confidence            344443333335666655566656666543322223345556777667788999999999999999876554433333  


Q ss_pred             -chHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhh-H--HHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHH
Q 006898           87 -LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD-L--VDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKT  162 (626)
Q Consensus        87 -l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~-~--~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~  162 (626)
                       +-+++..+.+|... +|-.|+.|+-.++..-..+. +  .+-+.|++. +.+.++..+|..+...+..+...  .+.+.
T Consensus       127 Gl~~Li~qmmtd~ve-vqcnaVgCitnLaT~d~nk~kiA~sGaL~pltr-LakskdirvqrnatgaLlnmThs--~EnRr  202 (550)
T KOG4224|consen  127 GLDLLILQMMTDGVE-VQCNAVGCITNLATFDSNKVKIARSGALEPLTR-LAKSKDIRVQRNATGALLNMTHS--RENRR  202 (550)
T ss_pred             ChHHHHHHhcCCCcE-EEeeehhhhhhhhccccchhhhhhccchhhhHh-hcccchhhHHHHHHHHHHHhhhh--hhhhh
Confidence             33466777665544 78889999988887633221 1  122555554 88888888888888877766432  12222


Q ss_pred             H-----HHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCcc----chhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhccc
Q 006898          163 E-----LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA----HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL  233 (626)
Q Consensus       163 ~-----l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~  233 (626)
                      .     -+|.+..++...++.||..++.+++.++-.....    ...+.++|.+..++.|+++.++..|.-+|..++...
T Consensus       203 ~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt  282 (550)
T KOG4224|consen  203 VLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT  282 (550)
T ss_pred             hhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc
Confidence            2     3578889999999999999999999987543321    223569999999999999999999999999887654


Q ss_pred             Cc--hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcc--ccchHHHHHHhcCCCh-HHHHHHHHHhHHHHH
Q 006898          234 EP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLRDNE-AEVRIAAAGKVTKFC  308 (626)
Q Consensus       234 ~~--~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~  308 (626)
                      .-  +.....-+|.+.++++|+.-..-...+.|+..++-+-+.+..  ...++..+..++.-.+ .+++-+|...|-.++
T Consensus       283 ~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLA  362 (550)
T KOG4224|consen  283 EYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLA  362 (550)
T ss_pred             hhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHh
Confidence            32  334555788999999988776666666777777665544321  2234455666665433 568889998888877


Q ss_pred             HhhChH---HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhh--hcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhH
Q 006898          309 RILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL--LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLD  383 (626)
Q Consensus       309 ~~~~~~---~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~--~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~  383 (626)
                      ......   .+-...+|.+.+++-|....+|..+..++..++-.  ........-++|++..++.+...+||..++.+|.
T Consensus       363 asse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~  442 (550)
T KOG4224|consen  363 ASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALI  442 (550)
T ss_pred             hhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHH
Confidence            633221   33345689999999999888888877777766532  2222334458899999999999999999999999


Q ss_pred             HHHhh
Q 006898          384 QVNQV  388 (626)
Q Consensus       384 ~~~~~  388 (626)
                      +++..
T Consensus       443 Nlss~  447 (550)
T KOG4224|consen  443 NLSSD  447 (550)
T ss_pred             hhhhh
Confidence            98754

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=2.5e-12  Score=125.85  Aligned_cols=377  Identities=15%  Similarity=0.167  Sum_probs=268.3

Q ss_pred             HHHHHhcCCCCHHHHHHHHHhHHHHHHhhCcc----chhhhHHHHHHHhhc-CCchhHHHHHHHHHHHhhcccCch---h
Q 006898          166 SIYTQLCQDDMPMVRRSAASNLGKFAATVEPA----HLKTDIMSIFEDLTQ-DDQDSVRLLAVEGCAALGKLLEPQ---D  237 (626)
Q Consensus       166 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~ll~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~---~  237 (626)
                      +.....+...+...+..+...+..+......+    .....++|.+...+. +..+.++..|.-+|.+++.+....   .
T Consensus        69 ~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~v  148 (514)
T KOG0166|consen   69 ELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVV  148 (514)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccc
Confidence            34444444445555666677776666544332    233457888888875 667899999999999999876552   2


Q ss_pred             hhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhcCCChH-HHHHHHHHhHHHHHHhhCh
Q 006898          238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEA-EVRIAAAGKVTKFCRILNP  313 (626)
Q Consensus       238 ~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~  313 (626)
                      .....+|.+..++.+++..||..++.+||.++.....   -......++.++.++....+ ...+.+..+|..++..-.+
T Consensus       149 v~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P  228 (514)
T KOG0166|consen  149 VDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNP  228 (514)
T ss_pred             ccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCC
Confidence            4566889999999999999999999999988743211   01123466667777766554 6777888999999885532


Q ss_pred             H---HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHH---HHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHh
Q 006898          314 E---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ  387 (626)
Q Consensus       314 ~---~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~  387 (626)
                      .   .....++|.+..++.+.+..|..-++.++..+...-.+.   ......+|.+..+|...+..|+..|+++++++..
T Consensus       229 ~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvt  308 (514)
T KOG0166|consen  229 SPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVT  308 (514)
T ss_pred             CCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceee
Confidence            1   345788999999999999999999999999887543321   1233578999999999999999999999999654


Q ss_pred             hhchh---hHHhhHHHHHHHHhc-CCChHHHHHHHHHHHHHHHhhCh---hhHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 006898          388 VIGID---LLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNL  460 (626)
Q Consensus       388 ~~~~~---~~~~~i~~~l~~~~~-~~~~~~r~~~~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l  460 (626)
                      ..+..   .+....+|.+..++. ++...+|..++-.++.+..+...   ..+...++|.+..+++..+...|..|++++
T Consensus       309 G~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaI  388 (514)
T KOG0166|consen  309 GSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAI  388 (514)
T ss_pred             ccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHH
Confidence            32221   123456788888887 56677999999999998864322   234567899999999999999999999999


Q ss_pred             HHHHHHhChHH----HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccCh------HHh-----hhcHHHHHhhhCCC
Q 006898          461 KRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS------EIT-----CSRLLPVVINASKD  525 (626)
Q Consensus       461 ~~l~~~~~~~~----~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~------~~~-----~~~~l~~l~~~l~d  525 (626)
                      +.++....++.    ....+++.+..++.-++.++-..++.++.++.+.-..      +.+     ....+..+..+..+
T Consensus       389 sN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~h  468 (514)
T KOG0166|consen  389 SNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSH  468 (514)
T ss_pred             HhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhcc
Confidence            99987655442    2356889999999888888888888899888653221      111     11233344444555


Q ss_pred             CCchHHHHHHHHHHHHH
Q 006898          526 RVPNIKFNVAKVLQSLI  542 (626)
Q Consensus       526 ~~~~vR~~a~~~l~~i~  542 (626)
                      .+.++...|.+.+....
T Consensus       469 en~~Iy~~A~~II~~yf  485 (514)
T KOG0166|consen  469 ENEEIYKKAYKIIDTYF  485 (514)
T ss_pred             ccHHHHHHHHHHHHHhc
Confidence            56667766666666544

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.52  E-value=3.1e-10  Score=113.83  Aligned_cols=486  Identities=16%  Similarity=0.135  Sum_probs=317.2

Q ss_pred             HHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhccccc-cccCCchHHHHHHHHHHhccccccCCcchhhcchHH
Q 006898           12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLS-ENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP   90 (626)
Q Consensus        12 ~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~-~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~   90 (626)
                      ..|.+-|.|.....+.+|++.+-.+ ...|.+  ...+.|-+. +...++.+|++-+---|-++++.  +++..-.=+..
T Consensus        38 ~dL~~lLdSnkd~~KleAmKRIia~-iA~G~d--vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEe--qpdLALLSInt  112 (968)
T KOG1060|consen   38 DDLKQLLDSNKDSLKLEAMKRIIAL-IAKGKD--VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEE--QPDLALLSINT  112 (968)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHH-HhcCCc--HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhc--CCCceeeeHHH
Confidence            4567778888888899998877765 333433  445555554 47788999999887777776663  23322223456


Q ss_pred             HhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHH
Q 006898           91 LETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQ  170 (626)
Q Consensus        91 l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~  170 (626)
                      +++-+.|+++.+|-.|.+++..|--    ..+.+.++-.+.++..|..+.||..|+..|..++..-+ +.+.++...+..
T Consensus       113 fQk~L~DpN~LiRasALRvlSsIRv----p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~-e~k~qL~e~I~~  187 (968)
T KOG1060|consen  113 FQKALKDPNQLIRASALRVLSSIRV----PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDP-EQKDQLEEVIKK  187 (968)
T ss_pred             HHhhhcCCcHHHHHHHHHHHHhcch----hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCCh-hhHHHHHHHHHH
Confidence            8888999999999999998876622    23445566677888899999999999999999987554 455599999999


Q ss_pred             hcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHH---HhhcCCchhHHHHHHHHHHHhhcccC-------------
Q 006898          171 LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFE---DLTQDDQDSVRLLAVEGCAALGKLLE-------------  234 (626)
Q Consensus       171 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~---~l~~d~~~~vr~~a~~~l~~l~~~~~-------------  234 (626)
                      ++.|.++.|--+|+.++..++...     .+.|.+.+.   +++-|-++-=+...+..|.+-+.+.-             
T Consensus       188 LLaD~splVvgsAv~AF~evCPer-----ldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n  262 (968)
T KOG1060|consen  188 LLADRSPLVVGSAVMAFEEVCPER-----LDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDN  262 (968)
T ss_pred             HhcCCCCcchhHHHHHHHHhchhH-----HHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccC
Confidence            999999999888888887765421     122223222   22333332223334444444333210             


Q ss_pred             ---------------c---hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHH
Q 006898          235 ---------------P---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEV  296 (626)
Q Consensus       235 ---------------~---~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v  296 (626)
                                     +   +.....++...+.++.+.++.|-.++++.+..++....    ...+...++.++.. +.++
T Consensus       263 ~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~----~~~i~kaLvrLLrs-~~~v  337 (968)
T KOG1060|consen  263 GRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ----VTKIAKALVRLLRS-NREV  337 (968)
T ss_pred             cccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH----HHHHHHHHHHHHhc-CCcc
Confidence                           0   11233456666777888888888888888887775431    34566777777765 3578


Q ss_pred             HHHHHHhHHHHHHhhChHHHHHhhHHHHHHhc-cCCCH-HHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHH
Q 006898          297 RIAAAGKVTKFCRILNPELAIQHILPCVKELS-SDSSQ-HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDV  374 (626)
Q Consensus       297 r~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~-~d~~~-~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v  374 (626)
                      +...+.++..++...     ..-+.|+++.+. -..++ .++.-=++.+..++..    .....+++-+....++.+..+
T Consensus       338 qyvvL~nIa~~s~~~-----~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~e----sni~~ILrE~q~YI~s~d~~f  408 (968)
T KOG1060|consen  338 QYVVLQNIATISIKR-----PTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANE----SNISEILRELQTYIKSSDRSF  408 (968)
T ss_pred             hhhhHHHHHHHHhcc-----hhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhh----ccHHHHHHHHHHHHhcCchhH
Confidence            888888888877632     123457777643 22232 4444444555555532    234567888888888888889


Q ss_pred             HHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcC-CchHHH
Q 006898          375 RLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD-KVYSIR  453 (626)
Q Consensus       375 r~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d-~~~~VR  453 (626)
                      -..++.++|.++...+.-  .+..+.-|..++.+.+..+-..++..+..+.+.-..+.  ..++..+.++++. ..+.-|
T Consensus       409 aa~aV~AiGrCA~~~~sv--~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h--~~ii~~La~lldti~vp~AR  484 (968)
T KOG1060|consen  409 AAAAVKAIGRCASRIGSV--TDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEH--LEILFQLARLLDTILVPAAR  484 (968)
T ss_pred             HHHHHHHHHHHHHhhCch--hhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHH--HHHHHHHHHHhhhhhhhhhh
Confidence            999999999998876542  25677888888888888888888888888876544432  1244444444422 245567


Q ss_pred             HHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhC-CCCCchHHH
Q 006898          454 DAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINAS-KDRVPNIKF  532 (626)
Q Consensus       454 ~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l-~d~~~~vR~  532 (626)
                      ....|.+|..+.....  ....++-.+.+-+.+....+|..++.....+.-.-..+  ...+..+...+. .|.+-++|.
T Consensus       485 A~IiWLige~~e~vpr--i~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~~--~kll~~Yv~~L~~yD~sYDiRD  560 (968)
T KOG1060|consen  485 AGIIWLIGEYCEIVPR--IAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNIDQ--TKLLVQYVFELARYDLSYDIRD  560 (968)
T ss_pred             ceeeeeehhhhhhcch--hchHHHHHHHHhhccccchhhHHHHHhhhhheEechhh--HHHHHHHHHHHhccCCCcchhH
Confidence            7777888888876432  23455666666788889999988887777664322222  233444444443 366666665


Q ss_pred             HH
Q 006898          533 NV  534 (626)
Q Consensus       533 ~a  534 (626)
                      .+
T Consensus       561 Ra  562 (968)
T KOG1060|consen  561 RA  562 (968)
T ss_pred             HH
Confidence            54

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=1.4e-09  Score=113.32  Aligned_cols=458  Identities=16%  Similarity=0.117  Sum_probs=280.9

Q ss_pred             hhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcC-CccchhHHHhhHhHHhcCC--CChHH
Q 006898           84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAG-EWFTARVSACGLFHIAYPS--APDIL  160 (626)
Q Consensus        84 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~-~~~~~r~~a~~~l~~~~~~--~~~~~  160 (626)
                      .+.++.-+...++|.+..||+.|++.++.+...+|++- ..+++..+..+.+- +.+..=..+|.++++++..  ..+..
T Consensus       339 vE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~L-ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~  417 (1133)
T KOG1943|consen  339 VEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPEL-ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL  417 (1133)
T ss_pred             HHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHH-HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence            34555666667788999999999999999999999643 33444444333322 2233445888899888654  23456


Q ss_pred             HHHHHHHHHHhcCC--------CCHHHHHHHHHhHHHHHHhhCccchh---hhHHH-HHHHhhcCCchhHHHHHHHHHHH
Q 006898          161 KTELRSIYTQLCQD--------DMPMVRRSAASNLGKFAATVEPAHLK---TDIMS-IFEDLTQDDQDSVRLLAVEGCAA  228 (626)
Q Consensus       161 ~~~l~~~l~~l~~d--------~~~~vR~~a~~~l~~l~~~~~~~~~~---~~ll~-~l~~l~~d~~~~vr~~a~~~l~~  228 (626)
                      ..+++|.+.+.+.-        ....||.+|+..+..+++...+....   +.+.+ .+...+.|.+-.+|.+|..++..
T Consensus       418 l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE  497 (1133)
T KOG1943|consen  418 LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQE  497 (1133)
T ss_pred             HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHH
Confidence            67888888877642        24579999999999999988775433   33333 34455788999999988877765


Q ss_pred             hhcccCc-----h-------------------------hhhhhhHHHHHHh----cCCCCHHHHHHHHHHHHHHHHHhCC
Q 006898          229 LGKLLEP-----Q-------------------------DCVAHILPVIVNF----SQDKSWRVRYMVANQLYELCEAVGP  274 (626)
Q Consensus       229 l~~~~~~-----~-------------------------~~~~~i~~~l~~~----~~d~~~~vR~~a~~~l~~l~~~~~~  274 (626)
                      ..-..+.     +                         .+..+.-|.+..+    +.+.+..+|..++.+|..+....++
T Consensus       498 ~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk  577 (1133)
T KOG1943|consen  498 NVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPK  577 (1133)
T ss_pred             HhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHH
Confidence            4332211     0                         1122233344333    3456778999999999998876654


Q ss_pred             CccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHH-----HHH-------hhHHHHHHhccCC--CHHHHHHHH
Q 006898          275 EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL-----AIQ-------HILPCVKELSSDS--SQHVRSALA  340 (626)
Q Consensus       275 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-----~~~-------~l~~~l~~l~~d~--~~~vr~~~~  340 (626)
                      .. ....+|.++......+...|.++..+.+.+......-.     ..+       .++|.+....-..  ..-.|.+.+
T Consensus       578 ~~-a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~  656 (1133)
T KOG1943|consen  578 YL-ADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATL  656 (1133)
T ss_pred             hh-cccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHH
Confidence            43 34555556666666778899988888877765332111     001       1122221111111  145566666


Q ss_pred             HHHHhhhhhh---cHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhh--chhhHHhhHHHHHHHHhcC-CChHHH
Q 006898          341 SVIMGMAPLL---GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI--GIDLLSQSLLPAIVELAED-RHWRVR  414 (626)
Q Consensus       341 ~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~--~~~~~~~~i~~~l~~~~~~-~~~~~r  414 (626)
                      +.+..+...-   ..+.+.+.....+.+.+.+++ .+|.++..+++.++..+  +.+.....++......+.+ .+.++|
T Consensus       657 ~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~r  735 (1133)
T KOG1943|consen  657 KFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERIR  735 (1133)
T ss_pred             HHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHHH
Confidence            6666654322   224445555556666666665 89999999999987654  2222222344444444444 467888


Q ss_pred             HHHHHHHHHHHHhhChhhHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHHhChH---HHhhhhHHHHHhhhc----C
Q 006898          415 LAIIEYIPLLASQLGVGFFDDKLGALCMQWL-QDKVYSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLEMIN----N  486 (626)
Q Consensus       415 ~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l-~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~l~----~  486 (626)
                      ....-+++.+-...-.....+.+...++... .|..+.-|+..+.++..++...+..   ...+++...+.+.+.    |
T Consensus       736 ~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd  815 (1133)
T KOG1943|consen  736 RGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTD  815 (1133)
T ss_pred             HHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccc
Confidence            8776666655432222222333444444433 4447788999999999999887722   223445555555443    3


Q ss_pred             C----ChHHHHHHHHHHHHhccccC-hHH----hhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhh
Q 006898          487 P----HYLYRMTILRAISLLAPVMG-SEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI  544 (626)
Q Consensus       487 ~----~~~vR~~a~~~l~~i~~~~~-~~~----~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~  544 (626)
                      .    ...||.+|..++..+...+. ++.    ....++-.+.+-.-++.+..|..|+.++..+...
T Consensus       816 ~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~~  882 (1133)
T KOG1943|consen  816 SRGDVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVVH  882 (1133)
T ss_pred             cCccHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceeec
Confidence            2    35699999999998876554 332    2333444444445567777899999999887765

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.44  E-value=6.7e-10  Score=114.38  Aligned_cols=364  Identities=17%  Similarity=0.161  Sum_probs=247.0

Q ss_pred             HHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---CccccchHH
Q 006898          207 FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVP  283 (626)
Q Consensus       207 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~  283 (626)
                      +...+++.+.+.-..++..|..+.+........+.+.+.+...+.++++.||..+++.++.++..-..   ......+++
T Consensus        43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~  122 (503)
T PF10508_consen   43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP  122 (503)
T ss_pred             HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence            55556666666667788888888887777666788889999999999999999999998887653211   112457999


Q ss_pred             HHHHhcCCChHHHHHHHHHhHHHHHHhhChH--HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHH---HHHh
Q 006898          284 AYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA---TIEQ  358 (626)
Q Consensus       284 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~---~~~~  358 (626)
                      .+...+.|++.+|...|+.+|..+++.-...  .+.....+.+..+...++..+|.-+++.+..++..-..-.   ....
T Consensus       123 ~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sg  202 (503)
T PF10508_consen  123 LIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSG  202 (503)
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhcc
Confidence            9999999999999999999999998742211  1123336778888877788889888888888865432211   1224


Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHhhHHHHhhh-chhhH-HhhHHHHHHHHhcCC--Ch---HHH-HHHHHHHHHHHHhhCh
Q 006898          359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GIDLL-SQSLLPAIVELAEDR--HW---RVR-LAIIEYIPLLASQLGV  430 (626)
Q Consensus       359 l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~-~~~~~-~~~i~~~l~~~~~~~--~~---~~r-~~~~~~l~~l~~~~~~  430 (626)
                      +++.++..++++|.-++.++++.+..++..- |.+++ ...+++.+.+.+.+.  ++   .+. -..+.+++.++.. .+
T Consensus       203 ll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~-~~  281 (503)
T PF10508_consen  203 LLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV-SP  281 (503)
T ss_pred             HHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc-Ch
Confidence            8889999999999999999999999998632 22332 245777787776432  22   222 2233566666664 33


Q ss_pred             hhHH---HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh-HHH-------hhhhHHHHHhhhcCCChHHHHHHHHHH
Q 006898          431 GFFD---DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP-EWA-------MQHITPQVLEMINNPHYLYRMTILRAI  499 (626)
Q Consensus       431 ~~~~---~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~-~~~-------~~~il~~l~~~l~~~~~~vR~~a~~~l  499 (626)
                      ..+.   +.++..++..+.+.+...+..|..++|.++..... ...       ...++..+..........+|..++.++
T Consensus       282 ~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al  361 (503)
T PF10508_consen  282 QEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHAL  361 (503)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence            3222   45667777888899999999999999999865322 211       123444444455666778999999999


Q ss_pred             HHhccccCh---HHh---h--------hcHHH-HHhhhCCCCCchHHHHHHHHHHHHHhhhccc---hhhhcccchHHhh
Q 006898          500 SLLAPVMGS---EIT---C--------SRLLP-VVINASKDRVPNIKFNVAKVLQSLIPIVDQS---VSTFSVSPFSFML  561 (626)
Q Consensus       500 ~~i~~~~~~---~~~---~--------~~~l~-~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~~  561 (626)
                      +.+......   +..   .        +.-.. .+..+++.|-+++|.++...|..++.+-...   ...+.++..+. .
T Consensus       362 ~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~ll-d  440 (503)
T PF10508_consen  362 ASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLL-D  440 (503)
T ss_pred             HHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhc-C
Confidence            999643332   111   1        11112 7788889999999999999999987664221   11223343333 3


Q ss_pred             hccCCCccccc
Q 006898          562 YLNVNNFNVGF  572 (626)
Q Consensus       562 l~~d~d~~vr~  572 (626)
                      -..+++++.++
T Consensus       441 r~~E~~K~~ke  451 (503)
T PF10508_consen  441 RSTETTKEGKE  451 (503)
T ss_pred             CCCCCCHHHHH
Confidence            34455666665

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.43  E-value=1.5e-09  Score=111.87  Aligned_cols=298  Identities=16%  Similarity=0.190  Sum_probs=200.7

Q ss_pred             HHHHhcCCccchhHHHhhHhHHhcCCCCh-HHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc--c-chhhhHHH
Q 006898          130 VKRLAAGEWFTARVSACGLFHIAYPSAPD-ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--A-HLKTDIMS  205 (626)
Q Consensus       130 l~~l~~~~~~~~r~~a~~~l~~~~~~~~~-~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~-~~~~~ll~  205 (626)
                      +...+++.+...-..++.++..+...... ...+++.+.+...+.++++.||..++..+++++..-..  + .....+++
T Consensus        43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~  122 (503)
T PF10508_consen   43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP  122 (503)
T ss_pred             HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence            44444444333344677777777666554 35788999999999999999999999999988764322  1 12356889


Q ss_pred             HHHHhhcCCchhHHHHHHHHHHHhhcccCc-h-hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC---ccccc
Q 006898          206 IFEDLTQDDQDSVRLLAVEGCAALGKLLEP-Q-DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRMD  280 (626)
Q Consensus       206 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~-~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~  280 (626)
                      .+..++.|++..|...|+.++..+++.-.. + .+.+...+.+..++...+..+|..+.+.+..++......   .....
T Consensus       123 ~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sg  202 (503)
T PF10508_consen  123 LIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSG  202 (503)
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhcc
Confidence            999999999999999999999999876433 1 123344778888887778888888888888876542211   11235


Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCh-HH-HHHhhHHHHHHhccCCC--HHHH----HHHHHHHHhhhhhhcH
Q 006898          281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP-EL-AIQHILPCVKELSSDSS--QHVR----SALASVIMGMAPLLGK  352 (626)
Q Consensus       281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~-~~~~l~~~l~~l~~d~~--~~vr----~~~~~~l~~l~~~~~~  352 (626)
                      +++.++..++++|.-+|..+++.+..+++.-.. +. ....+++.+..++.+..  ++.+    -..+..++.++...+.
T Consensus       203 ll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~  282 (503)
T PF10508_consen  203 LLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQ  282 (503)
T ss_pred             HHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChH
Confidence            888889989998899999999999999883221 11 22345666665544321  2111    2333555566554222


Q ss_pred             HH--HHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhh-chhhH-------HhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 006898          353 DA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GIDLL-------SQSLLPAIVELAEDRHWRVRLAIIEYIP  422 (626)
Q Consensus       353 ~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~-~~~~~-------~~~i~~~l~~~~~~~~~~~r~~~~~~l~  422 (626)
                      ..  ..+.++..+..++...++..+..|+.+++.++... |...+       .+.++..+.....+....+|..+++++.
T Consensus       283 ~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~  362 (503)
T PF10508_consen  283 EVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALA  362 (503)
T ss_pred             HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            21  23456777778888999999999999999987543 22222       1233444444455666778888888888


Q ss_pred             HHHHh
Q 006898          423 LLASQ  427 (626)
Q Consensus       423 ~l~~~  427 (626)
                      .+...
T Consensus       363 ~il~~  367 (503)
T PF10508_consen  363 SILTS  367 (503)
T ss_pred             HHHhc
Confidence            88653

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=4.2e-08  Score=102.60  Aligned_cols=422  Identities=18%  Similarity=0.137  Sum_probs=252.6

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhhccc-Cchh
Q 006898          160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLL-EPQD  237 (626)
Q Consensus       160 ~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~-~~~~  237 (626)
                      ..+.++..++..++|.+..||..+++.++.+....+.+ ..++.+.....+.+-- ++..=..++-+++.++... -...
T Consensus       338 ivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~-Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps  416 (1133)
T KOG1943|consen  338 IVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE-LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS  416 (1133)
T ss_pred             HHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH-HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence            55678888889999999999999999999999998853 3333444333332221 2333346777777766431 1122


Q ss_pred             hhhhhHHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHhCCCcccc---chHHHH-HHhcCCChHHHHHHHHHhHH
Q 006898          238 CVAHILPVIVNFSQ--------DKSWRVRYMVANQLYELCEAVGPEPTRM---DLVPAY-VRLLRDNEAEVRIAAAGKVT  305 (626)
Q Consensus       238 ~~~~i~~~l~~~~~--------d~~~~vR~~a~~~l~~l~~~~~~~~~~~---~l~~~l-~~~l~d~~~~vr~~a~~~l~  305 (626)
                      ....++|.+.+.+.        .....||.+++..+-.+++.........   .+.+.+ ...+-|.+-.+|.+|..++.
T Consensus       417 ~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlq  496 (1133)
T KOG1943|consen  417 LLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQ  496 (1133)
T ss_pred             HHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHH
Confidence            35567777765442        2346799999999999998776443222   222222 34556999999999998887


Q ss_pred             HHHHhhCh-----H-------------------------HHHHhhHHHHHHhcc----CCCHHHHHHHHHHHHhhhhhhc
Q 006898          306 KFCRILNP-----E-------------------------LAIQHILPCVKELSS----DSSQHVRSALASVIMGMAPLLG  351 (626)
Q Consensus       306 ~l~~~~~~-----~-------------------------~~~~~l~~~l~~l~~----d~~~~vr~~~~~~l~~l~~~~~  351 (626)
                      ......|.     +                         .+....-|.+..+..    +-+..+|..++.++..++..-+
T Consensus       497 E~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~p  576 (1133)
T KOG1943|consen  497 ENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEP  576 (1133)
T ss_pred             HHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhH
Confidence            65443220     0                         111122334444443    3455789999999999776544


Q ss_pred             HHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhh-----HHh-------hHHHHHHHHhcCC--ChHHHHHH
Q 006898          352 KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL-----LSQ-------SLLPAIVELAEDR--HWRVRLAI  417 (626)
Q Consensus       352 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~-----~~~-------~i~~~l~~~~~~~--~~~~r~~~  417 (626)
                      + ...+..+|.++......+...|.+...+.+++....-.-.     +.+       .++|.+.......  ..-+|.+.
T Consensus       577 k-~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~  655 (1133)
T KOG1943|consen  577 K-YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQAT  655 (1133)
T ss_pred             H-hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHH
Confidence            3 3344556666666666778888888888777654321100     111       1223322221111  13456666


Q ss_pred             HHHHHHHHHhhC---hhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhC--hHHHhhhhHHHHHhhhc-CCChHH
Q 006898          418 IEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG--PEWAMQHITPQVLEMIN-NPHYLY  491 (626)
Q Consensus       418 ~~~l~~l~~~~~---~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~--~~~~~~~il~~l~~~l~-~~~~~v  491 (626)
                      ...+..+...-.   .+++.+....++.+.+.+++ .+|.++.++++.++..+-  ++.....++...+..+. ..+..+
T Consensus       656 ~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~  734 (1133)
T KOG1943|consen  656 LKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERI  734 (1133)
T ss_pred             HHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHH
Confidence            666665543211   23344445555666666666 899999999999998652  22112234444444444 447889


Q ss_pred             HHHHHHHHHHhccccChHHhhhcHHHHHhhh-CCCCCchHHHHHHHHHHHHHhhhcc-------chhhhcccchHHhhhc
Q 006898          492 RMTILRAISLLAPVMGSEITCSRLLPVVINA-SKDRVPNIKFNVAKVLQSLIPIVDQ-------SVSTFSVSPFSFMLYL  563 (626)
Q Consensus       492 R~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~-l~d~~~~vR~~a~~~l~~i~~~~~~-------~~~~~~i~~~l~~~l~  563 (626)
                      |....-+++.+....=.-...+.+...++.. -.|..+.-|.....++..+....+.       ..+.+.++.+|. ...
T Consensus       735 r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~ld-dYt  813 (1133)
T KOG1943|consen  735 RRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALD-DYT  813 (1133)
T ss_pred             HHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh-hcc
Confidence            9998888887653211111233343333333 3455778899999999998877762       255567777777 777


Q ss_pred             cCCCccccc-ccccCchhHHHHHHHHHHH
Q 006898          564 NVNNFNVGF-IFAAFPLVLFSCLALNYCH  591 (626)
Q Consensus       564 ~d~d~~vr~-~~~~~~~~~~a~~al~~~~  591 (626)
                      .|...+|-. |.+      .|..|+..+-
T Consensus       814 td~rGDVGswVRe------aAm~al~~~~  836 (1133)
T KOG1943|consen  814 TDSRGDVGSWVRE------AAMKALSSLL  836 (1133)
T ss_pred             cccCccHHHHHHH------HHHHHHHhhh
Confidence            777777644 222      6666666553

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.43  E-value=2.4e-11  Score=111.00  Aligned_cols=382  Identities=14%  Similarity=0.129  Sum_probs=267.2

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhh---hHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchh--
Q 006898          163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKT---DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD--  237 (626)
Q Consensus       163 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~---~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~--  237 (626)
                      +....++.++++.++.++.++..++|+++-..+.....-   .+-+.+.+++.|. .+||..+++++.+++..-....  
T Consensus        85 es~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT~d~nk~ki  163 (550)
T KOG4224|consen   85 ESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLATFDSNKVKI  163 (550)
T ss_pred             hhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhccccchhhh
Confidence            344455567788899999999999999998877754332   2445667777766 4677888888888887633211  


Q ss_pred             hhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC--CccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChH-
Q 006898          238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-  314 (626)
Q Consensus       238 ~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-  314 (626)
                      -....+..+.++.+.++-+||..+..++..+......  ......-+|++..+++..++++|..|..+++.++-.-... 
T Consensus       164 A~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk  243 (550)
T KOG4224|consen  164 ARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARK  243 (550)
T ss_pred             hhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHH
Confidence            1122344455588888899999999888877654322  2233456899999999999999999999998876422111 


Q ss_pred             HH---HHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhh--cHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhh
Q 006898          315 LA---IQHILPCVKELSSDSSQHVRSALASVIMGMAPLL--GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI  389 (626)
Q Consensus       315 ~~---~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~  389 (626)
                      .+   -+.++|.+..+..|++++++..+.-+++.++..-  ..+....--+|.+..++.++.-..-.+.+.++..+.-+-
T Consensus       244 ~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihp  323 (550)
T KOG4224|consen  244 ILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHP  323 (550)
T ss_pred             HHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccccc
Confidence            11   1358899999999999999999999999987532  122223345789999998876555555556665554433


Q ss_pred             chhhH--HhhHHHHHHHHhcC-CChHHHHHHHHHHHHHHHhhC---hhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 006898          390 GIDLL--SQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRL  463 (626)
Q Consensus       390 ~~~~~--~~~i~~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~---~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l  463 (626)
                      +.+.+  ....+..+.+++.- ++...+..+...+-.++....   ...+...-+|.+..++.|..-.||..-..|+..+
T Consensus       324 lNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~L  403 (550)
T KOG4224|consen  324 LNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQL  403 (550)
T ss_pred             CcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHH
Confidence            33221  12344556666654 456688888888887775332   2233455688899999999999999888888887


Q ss_pred             HHHh--ChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHH--------hhhcHHHHHhhhCCCCCchHHHH
Q 006898          464 AEEF--GPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI--------TCSRLLPVVINASKDRVPNIKFN  533 (626)
Q Consensus       464 ~~~~--~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~--------~~~~~l~~l~~~l~d~~~~vR~~  533 (626)
                      .-.-  ........++|.++.+..+.+..+|-+++.++.++......-.        -.+.+-..|..++......+|..
T Consensus       404 al~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hi  483 (550)
T KOG4224|consen  404 ALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHI  483 (550)
T ss_pred             HhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHH
Confidence            6432  2223446789999999999999999999999999976432210        01345567777788888889999


Q ss_pred             HHHHHHHHHhhh
Q 006898          534 VAKVLQSLIPIV  545 (626)
Q Consensus       534 a~~~l~~i~~~~  545 (626)
                      +.+++-.+.+..
T Consensus       484 a~wTI~qLle~h  495 (550)
T KOG4224|consen  484 ARWTIQQLLEDH  495 (550)
T ss_pred             HHHHHHHHHHhC
Confidence            999998887654

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=99.42  E-value=2.2e-09  Score=104.06  Aligned_cols=463  Identities=12%  Similarity=0.073  Sum_probs=277.4

Q ss_pred             HHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhccccccccCCch-HHHHHHHHHHhccccccCCcchhhcchHHHh
Q 006898           14 LIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDD-EVLLAMAEELGVFIPYVGGVEHAHVLLPPLE   92 (626)
Q Consensus        14 l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~-~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~   92 (626)
                      +...+++.|..+|.....++.++... ..+.. --.--.+++.+...+ .+|-.|.+.|..++..    .....+-.++.
T Consensus        70 i~KlFQhkd~~Lrq~VY~aIkelS~~-tedvl-m~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~----~tv~~~er~l~  143 (898)
T COG5240          70 ILKLFQHKDLYLRQCVYSAIKELSKL-TEDVL-MGTSSIMKDLNGGVPDDVKPMAIRSLFSVIDG----ETVYDFERYLN  143 (898)
T ss_pred             HHHHHhcCChHHHHHHHHHHHHHhhc-chhhh-HHHHHHHHhhccCCccccccHHHHHHHHhcCc----chhhhHHHHhh
Confidence            44567899999999988888887432 21110 000122233333333 5777777777766552    12233444566


Q ss_pred             hhhcCcchHHHHHHHHHHHHHHhhcChh-hH----HHhHHHHHHHHhcCC------------ccchhHHHhhHhHHhcCC
Q 006898           93 TLCTVEETCVRDKAVESLCRIGSQMRES-DL----VDWYIPLVKRLAAGE------------WFTARVSACGLFHIAYPS  155 (626)
Q Consensus        93 ~l~~~~~~~vR~~a~~~l~~i~~~~~~~-~~----~~~l~~~l~~l~~~~------------~~~~r~~a~~~l~~~~~~  155 (626)
                      ....++.+.+|.+|.-.   -...++.. ..    .......+..+.+.+            ++-..+.|..++...-.+
T Consensus       144 ~a~Vs~~~a~~saalv~---aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~  220 (898)
T COG5240         144 QAFVSTSMARRSAALVV---AYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRT  220 (898)
T ss_pred             hhccccchhhhhhHHHH---hhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhcc
Confidence            66677888777765422   12222211 00    111111122222111            122334444444433222


Q ss_pred             CChHHHHHHHHHHHHhcCCCCHHHHHHHH--HhHHHHHHhh-CccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcc
Q 006898          156 APDILKTELRSIYTQLCQDDMPMVRRSAA--SNLGKFAATV-EPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL  232 (626)
Q Consensus       156 ~~~~~~~~l~~~l~~l~~d~~~~vR~~a~--~~l~~l~~~~-~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~  232 (626)
                      - +.....++..+..   ..  .++.+.+  ..+....+.+ .+..+...+.|.+...++|.-+.|...+.+++.+++..
T Consensus       221 d-kma~lklv~hf~~---n~--smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~  294 (898)
T COG5240         221 D-KMAQLKLVEHFRG---NA--SMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEE  294 (898)
T ss_pred             c-HHHHHHHHHHhhc---cc--ccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHh
Confidence            1 1111122222221   11  2222211  1112222222 22455667889999999998889998899988888766


Q ss_pred             cCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC
Q 006898          233 LEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN  312 (626)
Q Consensus       233 ~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~  312 (626)
                      .-..++....+..+..++..+....|-+|...+..++...+...  ...-+-+..++.|.+..+...|+.+|-+-    |
T Consensus       295 nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv--~vcN~evEsLIsd~Nr~IstyAITtLLKT----G  368 (898)
T COG5240         295 NVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV--SVCNKEVESLISDENRTISTYAITTLLKT----G  368 (898)
T ss_pred             ccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee--eecChhHHHHhhcccccchHHHHHHHHHc----C
Confidence            53445677788888999999999999999999999998876543  23345566788888877766666655443    3


Q ss_pred             hHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcC-CCHHHHHHHHHhhHHHHhhhch
Q 006898          313 PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGI  391 (626)
Q Consensus       313 ~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~L~~~~~~~~~  391 (626)
                      .+.-...++..+..+..|-+...+..++.++..++-.|+.+  ...++..+.+.|.+ ...+.+..++.++..+++..+.
T Consensus       369 t~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k--~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~  446 (898)
T COG5240         369 TEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSK--KLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPD  446 (898)
T ss_pred             chhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHH--HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCch
Confidence            34444666777777777777777888888888888877754  23455666665554 4578888999999988877654


Q ss_pred             hhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHH
Q 006898          392 DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW  471 (626)
Q Consensus       392 ~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~  471 (626)
                      ..  +.++..+..+++|-.+  ...+++.++.+++.-+...-....+-.+...+-=.+.-||.+|+.+|.++.-...+..
T Consensus       447 sk--EraLe~LC~fIEDcey--~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~  522 (898)
T COG5240         447 SK--ERALEVLCTFIEDCEY--HQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVV  522 (898)
T ss_pred             HH--HHHHHHHHHHHhhcch--hHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccc
Confidence            33  5677777777777543  2334445555554322111111122222222222467799999999999887666655


Q ss_pred             HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 006898          472 AMQHITPQVLEMINNPHYLYRMTILRAISLLA  503 (626)
Q Consensus       472 ~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~  503 (626)
                      ..+.+...+..+++|.+..+|..|..++..+-
T Consensus       523 ~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~  554 (898)
T COG5240         523 SPQSVENALKRCLNDQDDEVRDRASFLLRNMR  554 (898)
T ss_pred             cHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence            66777778888999999999999988888764

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.39  E-value=1.2e-09  Score=109.74  Aligned_cols=164  Identities=15%  Similarity=0.219  Sum_probs=76.1

Q ss_pred             HHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHH
Q 006898          325 KELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE  404 (626)
Q Consensus       325 ~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~  404 (626)
                      ..++.+.++.|-.++++++..++...    -...+...++.+|... ..++...+.++..+.....     ....|.+..
T Consensus       293 kpLl~S~n~sVVmA~aql~y~lAP~~----~~~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~-----~lF~P~lKs  362 (968)
T KOG1060|consen  293 KPLLQSRNPSVVMAVAQLFYHLAPKN----QVTKIAKALVRLLRSN-REVQYVVLQNIATISIKRP-----TLFEPHLKS  362 (968)
T ss_pred             cHHHhcCCcHHHHHHHhHHHhhCCHH----HHHHHHHHHHHHHhcC-CcchhhhHHHHHHHHhcch-----hhhhhhhhc
Confidence            33445555566666666655555322    2233444555544432 4555555555555443211     112233333


Q ss_pred             Hh--cCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHh
Q 006898          405 LA--EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE  482 (626)
Q Consensus       405 ~~--~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~  482 (626)
                      +.  ..+...+...=++.+..++..-..    ..+++-+..+..+.+..+-..|++++|..+...+.  .....+..|..
T Consensus       363 Ffv~ssDp~~vk~lKleiLs~La~esni----~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s--v~~tCL~gLv~  436 (968)
T KOG1060|consen  363 FFVRSSDPTQVKILKLEILSNLANESNI----SEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS--VTDTCLNGLVQ  436 (968)
T ss_pred             eEeecCCHHHHHHHHHHHHHHHhhhccH----HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc--hhhHHHHHHHH
Confidence            21  111223333333444444332221    22344444555555555555566666666555442  23445555555


Q ss_pred             hhcCCChHHHHHHHHHHHHhcc
Q 006898          483 MINNPHYLYRMTILRAISLLAP  504 (626)
Q Consensus       483 ~l~~~~~~vR~~a~~~l~~i~~  504 (626)
                      ++...+..|-..++..+..+.+
T Consensus       437 Llsshde~Vv~eaV~vIk~Llq  458 (968)
T KOG1060|consen  437 LLSSHDELVVAEAVVVIKRLLQ  458 (968)
T ss_pred             HHhcccchhHHHHHHHHHHHHh
Confidence            5555565565555555555554

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.35  E-value=1.7e-09  Score=109.27  Aligned_cols=421  Identities=14%  Similarity=0.100  Sum_probs=248.6

Q ss_pred             HHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHh
Q 006898          131 KRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDL  210 (626)
Q Consensus       131 ~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l  210 (626)
                      ..-..|+++..|..|.+..+.+--   +.....+...+..+++|.++.||+.++-+...+-..-+.......+++.+..+
T Consensus        92 ~kD~~d~np~iR~lAlrtm~~l~v---~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~l  168 (734)
T KOG1061|consen   92 LKDCEDPNPLIRALALRTMGCLRV---DKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDL  168 (734)
T ss_pred             hccCCCCCHHHHHHHhhceeeEee---hHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHH
Confidence            333344444445444444333211   23445566677788888889999988888887766544444455688888888


Q ss_pred             hcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc-cccchHHHHHHhc
Q 006898          211 TQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP-TRMDLVPAYVRLL  289 (626)
Q Consensus       211 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~~l  289 (626)
                      +.|+++.|-..|+.++..+.+.-+........-+.+..++..-+..+--.-+..+..++...+++. -..++...+...+
T Consensus       169 l~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~L  248 (734)
T KOG1061|consen  169 LSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRL  248 (734)
T ss_pred             hcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhh
Confidence            889999999999999888877655322222222222222221111111122334455555555443 1224555556666


Q ss_pred             CCChHHHHHHHHHhHHHHHHhhCh--HHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhh
Q 006898          290 RDNEAEVRIAAAGKVTKFCRILNP--ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL  367 (626)
Q Consensus       290 ~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l  367 (626)
                      ...++.|...+.+.+-........  +.+.+.+-|.+..++.... .+...+++.+..+....+. .+..+ ...++--.
T Consensus       249 qh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~-~~~~~-~~~Ff~ky  325 (734)
T KOG1061|consen  249 QHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPE-ILKVE-IKVFFCKY  325 (734)
T ss_pred             ccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChH-HHHhH-hHeeeeec
Confidence            666777777777777666655443  2333445555555555444 5555555555555443332 11111 11122222


Q ss_pred             cCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcC
Q 006898          368 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD  447 (626)
Q Consensus       368 ~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d  447 (626)
                      +|+ -.|+..=++.+..+...   +. ..++++.+.....+.+...-..++.+++.++-.....   +..++.++.+++-
T Consensus       326 nDP-iYvK~eKleil~~la~~---~n-l~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~---~~cv~~lLell~~  397 (734)
T KOG1061|consen  326 NDP-IYVKLEKLEILIELAND---AN-LAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS---NDCVSILLELLET  397 (734)
T ss_pred             CCc-hhhHHHHHHHHHHHhhH---hH-HHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh---hhhHHHHHHHHhh
Confidence            333 23443333333333221   11 2457777777777888777778888898887655443   6688888888887


Q ss_pred             CchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcC-CChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCC
Q 006898          448 KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN-PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDR  526 (626)
Q Consensus       448 ~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~-~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~  526 (626)
                      +..-|-+.+...+..+...+...  .+.+.+.+...+.. .++..|.+.++.+|.-++.++..   ..++..+.+...|.
T Consensus       398 ~~~yvvqE~~vvi~dilRkyP~~--~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~a---~elL~~f~en~~dE  472 (734)
T KOG1061|consen  398 KVDYVVQEAIVVIRDILRKYPNK--YESVVAILCENLDSLQEPEAKAALIWILGEYAERIENA---LELLESFLENFKDE  472 (734)
T ss_pred             cccceeeehhHHHHhhhhcCCCc--hhhhhhhhcccccccCChHHHHHHHHHHhhhhhccCcH---HHHHHHHHhhcccc
Confidence            77778888888888888877654  25566666554443 57889999999999888877654   56777788888888


Q ss_pred             CchHHHHHHHHHHHHHhhhccchhhhcccchHHhhhccC-CCccccc
Q 006898          527 VPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSFMLYLNV-NNFNVGF  572 (626)
Q Consensus       527 ~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~l~~d-~d~~vr~  572 (626)
                      ...|+.....+.-++..+.+. .-..-+...|. ....| .++++|.
T Consensus       473 ~~~Vql~LLta~ik~Fl~~p~-~tq~~l~~vL~-~~~~d~~~~dlrD  517 (734)
T KOG1061|consen  473 TAEVQLELLTAAIKLFLKKPT-ETQELLQGVLP-LATADTDNPDLRD  517 (734)
T ss_pred             hHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHh-hhhccccChhhhh
Confidence            888988777777776655443 12222333333 33333 3457777

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.34  E-value=2.2e-07  Score=96.60  Aligned_cols=450  Identities=14%  Similarity=0.106  Sum_probs=263.7

Q ss_pred             hhccccccccCCchHHHHHHHHHHhccccccCCcchhhcchHHHhhhhcCcc-hHHHHHHHHHHHH-HHhhcChhhHHHh
Q 006898           48 ELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEE-TCVRDKAVESLCR-IGSQMRESDLVDW  125 (626)
Q Consensus        48 ~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~-~~vR~~a~~~l~~-i~~~~~~~~~~~~  125 (626)
                      .++..+....+++|..|.+|...|.++-+..|      .+..+++...+|.. .-||++|+--++. |.+.++... .+.
T Consensus         5 ~l~~~~~~T~d~d~~~R~~AE~~L~q~~K~pg------Fv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~-~~g   77 (1010)
T KOG1991|consen    5 SLLQIFRATIDSDAKERKAAEQQLNQLEKQPG------FVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHE-APG   77 (1010)
T ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHhhcCCc------HHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccC-CCC
Confidence            45566667788889999999999998866432      33444555555554 3579988877765 444444321 000


Q ss_pred             HHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHH
Q 006898          126 YIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMS  205 (626)
Q Consensus       126 l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~  205 (626)
                                                .-.+..++.+..+...++..+-....-+|-....++..+...-.+ ..|+.+++
T Consensus        78 --------------------------~~~~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p-~~Wp~l~d  130 (1010)
T KOG1991|consen   78 --------------------------RPFGIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYP-EQWPGLLD  130 (1010)
T ss_pred             --------------------------CcCCCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCc-ccchhHHH
Confidence                                      011122333344444444433333455677666666666554333 66788999


Q ss_pred             HHHHhhcCCchhHHHHHHHHHHHhhcccC-c------------hhhhhhhHHHHHHhcCCCCHH---HHHHHHHHHHHHH
Q 006898          206 IFEDLTQDDQDSVRLLAVEGCAALGKLLE-P------------QDCVAHILPVIVNFSQDKSWR---VRYMVANQLYELC  269 (626)
Q Consensus       206 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~-~------------~~~~~~i~~~l~~~~~d~~~~---vR~~a~~~l~~l~  269 (626)
                      ....++++++...-..|+-++..+.+... +            +...+.++.....++.+.+..   .....++.+-.++
T Consensus       131 ~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~  210 (1010)
T KOG1991|consen  131 KIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLI  210 (1010)
T ss_pred             HHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHH
Confidence            99999999888777888888888887654 1            112334444455566666543   3333444443333


Q ss_pred             HH-hCCCcccc----chHHHHHHhcC-----------------CChHHHHHHHHHhHHHHHHhhChH------------H
Q 006898          270 EA-VGPEPTRM----DLVPAYVRLLR-----------------DNEAEVRIAAAGKVTKFCRILNPE------------L  315 (626)
Q Consensus       270 ~~-~~~~~~~~----~l~~~l~~~l~-----------------d~~~~vr~~a~~~l~~l~~~~~~~------------~  315 (626)
                      .. ++......    ..+..++..++                 ...+.+++.|+..|.++.+..|..            .
T Consensus       211 ~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~  290 (1010)
T KOG1991|consen  211 YYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQM  290 (1010)
T ss_pred             HHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHH
Confidence            32 22222111    23333333332                 122446788999999988877632            1


Q ss_pred             HHHhhHHH--------HHHhcc--CCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHH--------HHhh--cC------
Q 006898          316 AIQHILPC--------VKELSS--DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIF--------LSLL--KD------  369 (626)
Q Consensus       316 ~~~~l~~~--------l~~l~~--d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l--------~~~l--~d------  369 (626)
                      +.....+.        +.+..+  --+++|-.-++..+....   ........+-|++        +.++  +|      
T Consensus       291 f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~~~V---s~~~twkll~PHl~~ii~~vIFPlmc~~d~deelw  367 (1010)
T KOG1991|consen  291 FLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFLEQCV---SHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELW  367 (1010)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhc---cHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHH
Confidence            11222221        111111  022344444444433332   2222222222222        2222  22      


Q ss_pred             ---CCHHHH-------------HHHHHhhHHHHhhhchhhHHhhHHHHHHHHhc--------CCChHHHHHHHHHHHHHH
Q 006898          370 ---EFPDVR-------------LNIISKLDQVNQVIGIDLLSQSLLPAIVELAE--------DRHWRVRLAIIEYIPLLA  425 (626)
Q Consensus       370 ---~~~~vr-------------~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~--------~~~~~~r~~~~~~l~~l~  425 (626)
                         +..-+|             .+|...+-.++..-|++.+ ..+++.+.+.++        ..+++-...|+..+++++
T Consensus       368 e~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l-~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~  446 (1010)
T KOG1991|consen  368 EEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKETL-PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLA  446 (1010)
T ss_pred             hcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhhh-hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHH
Confidence               223344             4677777778877777776 567777777654        346888899999999999


Q ss_pred             HhhChh-h----HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-HHhChHHHhhhhHHHHHhhhc-CCChHHHHHHHHH
Q 006898          426 SQLGVG-F----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLA-EEFGPEWAMQHITPQVLEMIN-NPHYLYRMTILRA  498 (626)
Q Consensus       426 ~~~~~~-~----~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~-~~~~~~~~~~~il~~l~~~l~-~~~~~vR~~a~~~  498 (626)
                      ..+.+. .    +...+.+.++..++++..-.|..||+.++.++ ..+.......+++....+.+. |.+-.||..|+-|
T Consensus       447 ~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalA  526 (1010)
T KOG1991|consen  447 SILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALA  526 (1010)
T ss_pred             HHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHH
Confidence            876432 2    33456777777889999999999999999999 455555455666777766655 8889999999999


Q ss_pred             HHHhccccChH-----HhhhcHHHHHhhhCCCCCchHHHHHH
Q 006898          499 ISLLAPVMGSE-----ITCSRLLPVVINASKDRVPNIKFNVA  535 (626)
Q Consensus       499 l~~i~~~~~~~-----~~~~~~l~~l~~~l~d~~~~vR~~a~  535 (626)
                      +..++......     ...+.++..|+.+.++.+.+.-.+..
T Consensus       527 Lq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vm  568 (1010)
T KOG1991|consen  527 LQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVM  568 (1010)
T ss_pred             HHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHH
Confidence            99998766532     23445555666666666555544333

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.34  E-value=1.4e-10  Score=105.15  Aligned_cols=330  Identities=12%  Similarity=0.083  Sum_probs=217.3

Q ss_pred             hHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHhCCC---ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC---hH
Q 006898          242 ILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGPE---PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN---PE  314 (626)
Q Consensus       242 i~~~l~~~~-~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~  314 (626)
                      ++|-+..++ +.........++.++..++..-...   ......+|.|++++.+.+.+||+.++.+|+.++..-.   ..
T Consensus       115 vVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~  194 (526)
T COG5064         115 VVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDY  194 (526)
T ss_pred             ccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHH
Confidence            445555554 3333344557778888887643322   1234689999999999999999999999998865221   11


Q ss_pred             HHHHhhHHHHHHhccCC--CHHHHHHHHHHHHhhhhhhcH---HHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhh
Q 006898          315 LAIQHILPCVKELSSDS--SQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI  389 (626)
Q Consensus       315 ~~~~~l~~~l~~l~~d~--~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~  389 (626)
                      .+....+..+..++.+.  +-..-+.+-..+..++..-.+   .....+.+|++.+++...+++|-.-|+.+++++...-
T Consensus       195 vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~  274 (526)
T COG5064         195 VLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGP  274 (526)
T ss_pred             HHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCc
Confidence            11222333333333332  235555667778888764322   2346678999999999999999999999999986532


Q ss_pred             chh---hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChh---hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 006898          390 GID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLQDKVYSIRDAAANNLKRL  463 (626)
Q Consensus       390 ~~~---~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l  463 (626)
                      ...   .+...+.+.|.+++.+++..+..-+++.++.+..+-...   .+.-..++.+..++..+..++|..||+++..+
T Consensus       275 ~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNI  354 (526)
T COG5064         275 NEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNI  354 (526)
T ss_pred             HHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeeccc
Confidence            111   112345678999999999888888999999887654322   12234677777889999999999999999988


Q ss_pred             HHHhChH---HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChH-H-----hhhcHHHHHhhhCCCCCchHHHHH
Q 006898          464 AEEFGPE---WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE-I-----TCSRLLPVVINASKDRVPNIKFNV  534 (626)
Q Consensus       464 ~~~~~~~---~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~-~-----~~~~~l~~l~~~l~d~~~~vR~~a  534 (626)
                      ...-...   .....++|.|..++...++.+|..||+++.+.....-.. .     +.+.++..|..++.-.+-.+-..+
T Consensus       355 TAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~  434 (526)
T COG5064         355 TAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVA  434 (526)
T ss_pred             ccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhh
Confidence            6432221   234678999999999999999999999999987643221 1     123345556666654444466667


Q ss_pred             HHHHHHHHhhhccc------------hh--hhcccchHHhhhccCCCccccc
Q 006898          535 AKVLQSLIPIVDQS------------VS--TFSVSPFSFMLYLNVNNFNVGF  572 (626)
Q Consensus       535 ~~~l~~i~~~~~~~------------~~--~~~i~~~l~~~l~~d~d~~vr~  572 (626)
                      +.++..+......+            .+  ....+..+. .+.+..+.++-.
T Consensus       435 LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~-~~Q~s~n~~iy~  485 (526)
T COG5064         435 LDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIH-GLQDSVNRTIYD  485 (526)
T ss_pred             HHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHH-HhhhccccHHHH
Confidence            88887776543211            11  124455555 666666666555

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=99.31  E-value=1.5e-08  Score=98.37  Aligned_cols=470  Identities=12%  Similarity=0.026  Sum_probs=265.5

Q ss_pred             hcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCC----ccchhHHHhhHhHHhcCCCChHH
Q 006898           85 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE----WFTARVSACGLFHIAYPSAPDIL  160 (626)
Q Consensus        85 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~----~~~~r~~a~~~l~~~~~~~~~~~  160 (626)
                      ..+.--+.++.++.++..|+..-.++..+...-      +.++.....+++|-    ...+|-.|.+.+-.+.+.   +.
T Consensus        64 t~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~t------edvlm~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~---~t  134 (898)
T COG5240          64 TNLFFAILKLFQHKDLYLRQCVYSAIKELSKLT------EDVLMGTSSIMKDLNGGVPDDVKPMAIRSLFSVIDG---ET  134 (898)
T ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcc------hhhhHHHHHHHHhhccCCccccccHHHHHHHHhcCc---ch
Confidence            344445677888899999988777766654432      12233333333332    234666666655544433   33


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc--cchhhhHHHHHHHhhcC------------CchhHHHHHHHHH
Q 006898          161 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQD------------DQDSVRLLAVEGC  226 (626)
Q Consensus       161 ~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~l~~d------------~~~~vr~~a~~~l  226 (626)
                      ...+-.++.+..-++++.+|.+++-.--.+......  ..|.++.-.....+.+.            .++-.+-.|++.|
T Consensus       135 v~~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlL  214 (898)
T COG5240         135 VYDFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLL  214 (898)
T ss_pred             hhhHHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHH
Confidence            333444555666677777777654332222111000  01111111111111111            1222333344444


Q ss_pred             HHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC-CccccchHHHHHHhcCCChHHHHHHHHHhHH
Q 006898          227 AALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP-EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVT  305 (626)
Q Consensus       227 ~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~  305 (626)
                      ..+-.+-.     -..+..+..+..+.+..-..+.+..+..+...+.. .....++.|.+-..++|...-|...+++++.
T Consensus       215 yq~kr~dk-----ma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~  289 (898)
T COG5240         215 YQSKRTDK-----MAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVC  289 (898)
T ss_pred             HHHhcccH-----HHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHH
Confidence            33221100     00111122222221111111111111222222211 1223567888888889988899999999999


Q ss_pred             HHHHhh-ChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHH
Q 006898          306 KFCRIL-NPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ  384 (626)
Q Consensus       306 ~l~~~~-~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~  384 (626)
                      .++... +++.+ +..+..+..+++.+....|-++++.+..++-..+...  ...-+-+..+.+|.+..+...|+.+|-.
T Consensus       290 ~~~~~nv~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv--~vcN~evEsLIsd~Nr~IstyAITtLLK  366 (898)
T COG5240         290 ALSEENVGSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV--SVCNKEVESLISDENRTISTYAITTLLK  366 (898)
T ss_pred             HHHHhccCHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee--eecChhHHHHhhcccccchHHHHHHHHH
Confidence            887754 55544 5667788888888888999999999999986554321  1233456677888888888777777654


Q ss_pred             HHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHH
Q 006898          385 VNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW-LQDKVYSIRDAAANNLKRL  463 (626)
Q Consensus       385 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~-l~d~~~~VR~~a~~~l~~l  463 (626)
                      -    |.+.-.+.++..+..++.|-+...+..+++++..++..++.+.  ..++..+... ++....+.+..++.++..+
T Consensus       367 T----Gt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~--~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~  440 (898)
T COG5240         367 T----GTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK--LSYLDFLGSSLLQEGGLEFKKYMVDAISDA  440 (898)
T ss_pred             c----CchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH--HHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            3    3333334566666666666555566666777777666555432  1233333333 3345667888888888888


Q ss_pred             HHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHh
Q 006898          464 AEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP  543 (626)
Q Consensus       464 ~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~  543 (626)
                      .+...+  .++..+..+...+.|-.+.  +.+++.++-+++..+..........++...+-=.+.-||.+|..+|.++.-
T Consensus       441 ~~~~p~--skEraLe~LC~fIEDcey~--~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~l  516 (898)
T COG5240         441 MENDPD--SKERALEVLCTFIEDCEYH--QITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFAL  516 (898)
T ss_pred             HhhCch--HHHHHHHHHHHHHhhcchh--HHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence            876543  3566777787777775432  334444554444322211111222222222223467799999999999988


Q ss_pred             hhccchhhhcccchHHhhhccCCCcccccccccCchhHHHHHHHHHHH
Q 006898          544 IVDQSVSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCH  591 (626)
Q Consensus       544 ~~~~~~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~  591 (626)
                      ..........+..+|+ +.++|.|.+||.         .|..++..+.
T Consensus       517 n~~d~~~~~sv~~~lk-RclnD~DdeVRd---------rAsf~l~~~~  554 (898)
T COG5240         517 NISDVVSPQSVENALK-RCLNDQDDEVRD---------RASFLLRNMR  554 (898)
T ss_pred             CccccccHHHHHHHHH-HHhhcccHHHHH---------HHHHHHHhhh
Confidence            7777677788999999 999999999999         8888888775

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=99.27  E-value=3.4e-09  Score=104.78  Aligned_cols=248  Identities=23%  Similarity=0.296  Sum_probs=152.0

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhh
Q 006898          163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHI  242 (626)
Q Consensus       163 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i  242 (626)
                      ...+.+.+.+.++++.+|..++..++.+..        ...+|.+...+.|.++.+|..+..+++.+.        .+..
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~--------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--------~~~a  106 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGS--------EEAVPLLRELLSDEDPRVRDAAADALGELG--------DPEA  106 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhch--------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC--------ChhH
Confidence            345667778888889999999988766543        457788889999999999999999877654        2345


Q ss_pred             HHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCh------------HHHHHHHHHhHHHHHH
Q 006898          243 LPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNE------------AEVRIAAAGKVTKFCR  309 (626)
Q Consensus       243 ~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~------------~~vr~~a~~~l~~l~~  309 (626)
                      ++.+...+. |+++.||..++.+|+.+...        ..+..++..+.|..            ..+|..++..++.+..
T Consensus       107 ~~~li~~l~~d~~~~vR~~aa~aL~~~~~~--------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~  178 (335)
T COG1413         107 VPPLVELLENDENEGVRAAAARALGKLGDE--------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD  178 (335)
T ss_pred             HHHHHHHHHcCCcHhHHHHHHHHHHhcCch--------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC
Confidence            555555555 79999999999999877642        22444555565544            2456666666655543


Q ss_pred             hhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhh
Q 006898          310 ILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI  389 (626)
Q Consensus       310 ~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~  389 (626)
                              +...+.+...+.+.+..||..++..++.+....      ..+.+.+...+.|++..+|..++.+++.+..  
T Consensus       179 --------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~--  242 (335)
T COG1413         179 --------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALLALGEIGD--  242 (335)
T ss_pred             --------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc--
Confidence                    333455555666666667776666666654221      2344556666666666666666666665532  


Q ss_pred             chhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 006898          390 GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLA  464 (626)
Q Consensus       390 ~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~  464 (626)
                            ....+.+.....+.+|.++.........    .+    ...-.+.+...+.|....+|..+...++.+.
T Consensus       243 ------~~~~~~l~~~l~~~~~~~~~~~~~~~~~----~~----~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~  303 (335)
T COG1413         243 ------EEAVDALAKALEDEDVILALLAAAALGA----LD----LAEAALPLLLLLIDEANAVRLEAALALGQIG  303 (335)
T ss_pred             ------chhHHHHHHHHhccchHHHHHHHHHhcc----cC----chhhHHHHHHHhhcchhhHHHHHHHHHHhhc
Confidence                  2344455555555555555544433331    00    0111223444455556666666665555554

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=99.27  E-value=2.6e-09  Score=105.63  Aligned_cols=277  Identities=23%  Similarity=0.251  Sum_probs=201.8

Q ss_pred             hHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccch
Q 006898          202 DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDL  281 (626)
Q Consensus       202 ~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l  281 (626)
                      ...+.+.+.+.|+++.+|..+...++.+.        ....+|.+...+.|.++.||..++.+++.+.        .+..
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~--------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--------~~~a  106 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELG--------SEEAVPLLRELLSDEDPRVRDAAADALGELG--------DPEA  106 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhc--------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC--------ChhH
Confidence            35667778888889999999998876654        4668899999999999999999999888665        3456


Q ss_pred             HHHHHHhcC-CChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCC------------HHHHHHHHHHHHhhhh
Q 006898          282 VPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS------------QHVRSALASVIMGMAP  348 (626)
Q Consensus       282 ~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~------------~~vr~~~~~~l~~l~~  348 (626)
                      ++.+...++ |.+..||..+..+|+.+...        ..++.+...+++..            +.+|.++...++.+. 
T Consensus       107 ~~~li~~l~~d~~~~vR~~aa~aL~~~~~~--------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~-  177 (335)
T COG1413         107 VPPLVELLENDENEGVRAAAARALGKLGDE--------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELG-  177 (335)
T ss_pred             HHHHHHHHHcCCcHhHHHHHHHHHHhcCch--------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcC-
Confidence            777777777 79999999999999988652        11233333334333            468888888887775 


Q ss_pred             hhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh
Q 006898          349 LLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL  428 (626)
Q Consensus       349 ~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~  428 (626)
                             .+...+.+...+.|.+..||..+..+|+.+....      ..+.+.+.+...+++|.+|..++..++.+..  
T Consensus       178 -------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~--  242 (335)
T COG1413         178 -------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALLALGEIGD--  242 (335)
T ss_pred             -------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc--
Confidence                   2345667788889999999999999999886542      2466788888899999999999888876532  


Q ss_pred             ChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccCh
Q 006898          429 GVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS  508 (626)
Q Consensus       429 ~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~  508 (626)
                            ..-.+.+...+.+.+..++..+...++..        ......+.+...+.|.++.+|..+...++.+..... 
T Consensus       243 ------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-  307 (335)
T COG1413         243 ------EEAVDALAKALEDEDVILALLAAAALGAL--------DLAEAALPLLLLLIDEANAVRLEAALALGQIGQEKA-  307 (335)
T ss_pred             ------chhHHHHHHHHhccchHHHHHHHHHhccc--------CchhhHHHHHHHhhcchhhHHHHHHHHHHhhcccch-
Confidence                  23445566777888888887777666511        112234556667888899999999999988765332 


Q ss_pred             HHhhhcHHHHHhhhCCCCCchHHHHHHHHHHH
Q 006898          509 EITCSRLLPVVINASKDRVPNIKFNVAKVLQS  540 (626)
Q Consensus       509 ~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~  540 (626)
                             .........+....+|..+......
T Consensus       308 -------~~a~~~~~~~~~~~~~~~~~~~~~~  332 (335)
T COG1413         308 -------VAALLLALEDGDADVRKAALILLEG  332 (335)
T ss_pred             -------HHHHHHHhcCCchhhHHHHHHHHHh
Confidence                   2244455667778888777666554

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=99.23  E-value=9.4e-07  Score=95.77  Aligned_cols=509  Identities=14%  Similarity=0.105  Sum_probs=264.3

Q ss_pred             HHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhcccccc-ccCCchHHHHHHHHHHhccccccCCcchhhcchHH
Q 006898           12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP   90 (626)
Q Consensus        12 ~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~   90 (626)
                      ..++-.+..+-..+|..|+++|+.+...-+.--..+.+-..+-. ..|....||.++.+.+|.++-+  .++........
T Consensus       819 k~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~--~~e~~~qyY~~  896 (1692)
T KOG1020|consen  819 KLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLS--IPELIFQYYDQ  896 (1692)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhc--cHHHHHHHHHH
Confidence            45667788999999999999999996642211123333333333 6788889999999999998764  34455555556


Q ss_pred             HhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChH------HHHHH
Q 006898           91 LETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI------LKTEL  164 (626)
Q Consensus        91 l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~------~~~~l  164 (626)
                      +.+-+.|+.-.||+-+++.+..++...|.-.....+..-+..-.+|+...+...++..+-.++..-.+.      ....+
T Consensus       897 i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~~~kI  976 (1692)
T KOG1020|consen  897 IIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAKARKI  976 (1692)
T ss_pred             HHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHHHHhh
Confidence            666677888999999999999999988763333344444444456666668888888887776543221      11111


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHH-hh-cCCchhHHHHHHHHHH---HhhcccCchhhh
Q 006898          165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFED-LT-QDDQDSVRLLAVEGCA---ALGKLLEPQDCV  239 (626)
Q Consensus       165 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~-l~-~d~~~~vr~~a~~~l~---~l~~~~~~~~~~  239 (626)
                      ...+ .       .|+.. .        ..+ ..+.+.++..+.+ .. .-....+...+.....   .+..++-    .
T Consensus       977 ~~~~-~-------vv~~~-~--------d~~-~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl----~ 1034 (1692)
T KOG1020|consen  977 SLEV-D-------VVMSQ-V--------DLM-NDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCL----V 1034 (1692)
T ss_pred             HHHH-H-------HHHHH-H--------HHh-cChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHH----H
Confidence            1000 0       01110 0        000 1111111111111 10 0001111111111111   1110000    0


Q ss_pred             hhhHHHHHHhcCCCCHHHHHHH-HHHHHHHHHHhCCCcc---ccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHHhhC--
Q 006898          240 AHILPVIVNFSQDKSWRVRYMV-ANQLYELCEAVGPEPT---RMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILN--  312 (626)
Q Consensus       240 ~~i~~~l~~~~~d~~~~vR~~a-~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~--  312 (626)
                      ..+...-.....+++..+|..+ +..|..++...+.-.+   ...+.|++..-.+. ++..+-...+..+..+...+.  
T Consensus      1035 ~~i~ev~~~~~~~~~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~ 1114 (1692)
T KOG1020|consen 1035 EKISEVESDDMNEEESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANP 1114 (1692)
T ss_pred             HHHHhhhhHhhhcccchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccc
Confidence            0111111112233344455433 3444555544332221   12344544433221 122333334444444333222  


Q ss_pred             hHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHH-HHHHhHHHHHHHhh-------cCC----CHHHHHHHHH
Q 006898          313 PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD-ATIEQLLPIFLSLL-------KDE----FPDVRLNIIS  380 (626)
Q Consensus       313 ~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~-~~~~~l~~~l~~~l-------~d~----~~~vr~~a~~  380 (626)
                      .+.+...+-..|.+++-..+...-..+..+++.++..+... .....++..+.+.+       .+.    ....-...+-
T Consensus      1115 sesfL~sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~Rsif 1194 (1692)
T KOG1020|consen 1115 SESFLASLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIF 1194 (1692)
T ss_pred             hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHH
Confidence            22333444444444333333344445555566655432211 11222222222222       111    1011122333


Q ss_pred             hhHHHHhhhc--------h------hhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhc
Q 006898          381 KLDQVNQVIG--------I------DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ  446 (626)
Q Consensus       381 ~L~~~~~~~~--------~------~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~  446 (626)
                      ++|.++..+.        +      +...+.++..+.-+.++.+..+|..++..++.++-....-+....+...+...+.
T Consensus      1195 tlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila 1274 (1692)
T KOG1020|consen 1195 TLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILA 1274 (1692)
T ss_pred             HHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHh
Confidence            4555554321        1      1233556666666677778889999999998887665555555666666666665


Q ss_pred             CCchHHH--HHHHHHHHHHHHH----h---Ch---------------------------HHHhhhhHHHHHhhhcCCChH
Q 006898          447 DKVYSIR--DAAANNLKRLAEE----F---GP---------------------------EWAMQHITPQVLEMINNPHYL  490 (626)
Q Consensus       447 d~~~~VR--~~a~~~l~~l~~~----~---~~---------------------------~~~~~~il~~l~~~l~~~~~~  490 (626)
                      |.+..+.  ..+...+..+...    +   |.                           .-..+.+++.+++.+-+.+.+
T Consensus      1275 ~~n~~~~~ki~~l~n~~~yL~eee~~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~ 1354 (1692)
T KOG1020|consen 1275 DDNSDIKSKIQLLQNLELYLLEEEKKLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQ 1354 (1692)
T ss_pred             hhcccHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHhccchH
Confidence            5544332  2333332222110    0   00                           013466788888888899999


Q ss_pred             HHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhc
Q 006898          491 YRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  546 (626)
Q Consensus       491 vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~  546 (626)
                      +|..|++.+.-+...-  -..-....|.|..+-.|+....|..|-..|..|-+++.
T Consensus      1355 ~r~~aikvl~liL~QG--LVhP~~cvPtLIAL~Tdp~~~~r~~Ad~LL~eid~kY~ 1408 (1692)
T KOG1020|consen 1355 VRLVAIKVLKLILNQG--LVHPVHCVPTLIALETDPSQAIRHVADELLKEIDEKYE 1408 (1692)
T ss_pred             HHHHHHHHHHHHHHcc--CCCccchhhhheeecCChHHHHHHHHHHHHHHHHHhhH
Confidence            9999999998776521  11124688999999999999999999999999988874

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=99.23  E-value=4.5e-10  Score=112.38  Aligned_cols=255  Identities=14%  Similarity=0.128  Sum_probs=206.0

Q ss_pred             CCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCC
Q 006898          331 SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRH  410 (626)
Q Consensus       331 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~  410 (626)
                      ++..-|....+.|......++++.....++|.++..+.-.+  --...+..+-.+.+.+..+.+...++|.+.++....+
T Consensus       266 ks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~D  343 (690)
T KOG1243|consen  266 KSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSPD  343 (690)
T ss_pred             CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccccccchhhhHHHHhcCcc
Confidence            45555666666666666677777777778888777664322  1112223333344445555566789999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChH
Q 006898          411 WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYL  490 (626)
Q Consensus       411 ~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~  490 (626)
                      ..+|...++.+......+.++...+.++|.+...+.|+++.+|+.+++++..++..++......+++..+..+-.|....
T Consensus       344 r~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~~~  423 (690)
T KOG1243|consen  344 RQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEHGG  423 (690)
T ss_pred             hHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccccCc
Confidence            99999999999999999999999999999999999999999999999999999999998877788999999888899999


Q ss_pred             HHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccchhhhcccchHHhhhccCCCccc
Q 006898          491 YRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSFMLYLNVNNFNV  570 (626)
Q Consensus       491 vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~l~~d~d~~v  570 (626)
                      +|....-|++.++.++.+......+.-.+.+.++|+...-|.++...+....+.+........|+|.+. .+.-|++..|
T Consensus       424 irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~-pl~vd~e~~v  502 (690)
T KOG1243|consen  424 IRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLV-PLTVDPEKTV  502 (690)
T ss_pred             ccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhcccccc-ccccCcccch
Confidence            999999999999988776643333334455578999999999999999999999988888899999999 9999999999


Q ss_pred             ccccccCchhHHHHHHHHHHHHHhhcC
Q 006898          571 GFIFAAFPLVLFSCLALNYCHRWWRKQ  597 (626)
Q Consensus       571 r~~~~~~~~~~~a~~al~~~~~~~~~~  597 (626)
                      |.         -|-.+++.+.+...+.
T Consensus       503 r~---------~a~~~i~~fl~kl~~~  520 (690)
T KOG1243|consen  503 RD---------TAEKAIRQFLEKLEKV  520 (690)
T ss_pred             hh---------HHHHHHHHHHhhhhhh
Confidence            99         8888888776554443

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=99.19  E-value=2.4e-06  Score=92.81  Aligned_cols=487  Identities=14%  Similarity=0.106  Sum_probs=280.2

Q ss_pred             HhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHH
Q 006898           91 LETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQ  170 (626)
Q Consensus        91 l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~  170 (626)
                      +...+..+...+|..|.+|+..+.+.=+.-...+.+...+..-..|....||.+|..++|.+.-.- ++...++...+..
T Consensus       821 Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~-~e~~~qyY~~i~e  899 (1692)
T KOG1020|consen  821 ILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSI-PELIFQYYDQIIE  899 (1692)
T ss_pred             HHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhcc-HHHHHHHHHHHHh
Confidence            334456677889999999999998753332222334445555667788899999999999876543 3455666677777


Q ss_pred             hcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCch-----hhhhhhH--
Q 006898          171 LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ-----DCVAHIL--  243 (626)
Q Consensus       171 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~-----~~~~~i~--  243 (626)
                      ...|+...||+.+++.+..++...+.-....++.--+..-.+|++..+...+.+++..+.=.-.+.     .+...+.  
T Consensus       900 rIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~~~kI~~~  979 (1692)
T KOG1020|consen  900 RILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAKARKISLE  979 (1692)
T ss_pred             hcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHHHHhhHHH
Confidence            888999999999999999999877663333444445555578888889998888888764211111     1111111  


Q ss_pred             -HHHH---HhcCCCCHHHHHHHHHHHHHHHHHhCCCc----cccchHHHHHHh------------cCCChHHHHH-HHHH
Q 006898          244 -PVIV---NFSQDKSWRVRYMVANQLYELCEAVGPEP----TRMDLVPAYVRL------------LRDNEAEVRI-AAAG  302 (626)
Q Consensus       244 -~~l~---~~~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~------------l~d~~~~vr~-~a~~  302 (626)
                       ..+.   .+..++.+..-....+.=.......+.+.    .....+..+...            ..+++.++|. +.+.
T Consensus       980 ~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~ls 1059 (1692)
T KOG1020|consen  980 VDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEESEVRLLAYLS 1059 (1692)
T ss_pred             HHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccchhHHHHHHH
Confidence             1110   12222222111111100000000000000    001111111111            1223334444 5567


Q ss_pred             hHHHHHHhhChH---HHHHhhHHHHHHhccC-CCHHHHHHHHHHHHhhhhhhc--HHHHHHhHHHHHHHhhcCCCHHHHH
Q 006898          303 KVTKFCRILNPE---LAIQHILPCVKELSSD-SSQHVRSALASVIMGMAPLLG--KDATIEQLLPIFLSLLKDEFPDVRL  376 (626)
Q Consensus       303 ~l~~l~~~~~~~---~~~~~l~~~l~~l~~d-~~~~vr~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr~  376 (626)
                      .|..|++..+.-   .+...+.|++..-+.. ...++-..++..+....+...  .+.+...+-..+.+.+--..-..-.
T Consensus      1060 tL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a~V~ 1139 (1692)
T KOG1020|consen 1060 TLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGMATVV 1139 (1692)
T ss_pred             HHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcchHHHH
Confidence            778887744321   2335566777654322 223444455544444443322  2344555555666665555555566


Q ss_pred             HHHHhhHHHHhhh--chhhHHhhHHHHHHHHh---c----CC----ChHHHHHHHHHHHHHHHhh--------Chh----
Q 006898          377 NIISKLDQVNQVI--GIDLLSQSLLPAIVELA---E----DR----HWRVRLAIIEYIPLLASQL--------GVG----  431 (626)
Q Consensus       377 ~a~~~L~~~~~~~--~~~~~~~~i~~~l~~~~---~----~~----~~~~r~~~~~~l~~l~~~~--------~~~----  431 (626)
                      .|+.+++.+....  |.... ..++....+.+   +    +.    +...-...+-.++.++..+        |+.    
T Consensus      1140 ~~vsCl~sl~~k~~~~~~~v-~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~ 1218 (1692)
T KOG1020|consen 1140 EAVSCLGSLATKRTDGAKVV-KACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQE 1218 (1692)
T ss_pred             HHHHHHHHHHhhhccchHHH-HHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccchhh
Confidence            7778888877653  22222 23333333322   1    11    2233344556666666643        222    


Q ss_pred             --hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChH-H-HHHHHHHHHHhccc--
Q 006898          432 --FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYL-Y-RMTILRAISLLAPV--  505 (626)
Q Consensus       432 --~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~-v-R~~a~~~l~~i~~~--  505 (626)
                        ...+.++-.+..+..+.+..+|..|...+|.+|-....-.....+...+.+.+++.+.. . +..+++.+......  
T Consensus      1219 ~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~~~~ki~~l~n~~~yL~eee 1298 (1692)
T KOG1020|consen 1219 GETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSDIKSKIQLLQNLELYLLEEE 1298 (1692)
T ss_pred             hhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH
Confidence              34566677777777888899999999999999987666555666777777766665433 2 44444444332210  


Q ss_pred             --c--------------------------Ch----HHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccchhhhc
Q 006898          506 --M--------------------------GS----EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVSTFS  553 (626)
Q Consensus       506 --~--------------------------~~----~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~  553 (626)
                        +                          +.    ....+..++.++...-|.+..+|..|++.+.-+.... - ...-.
T Consensus      1299 ~~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QG-L-VhP~~ 1376 (1692)
T KOG1020|consen 1299 KKLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQG-L-VHPVH 1376 (1692)
T ss_pred             HHHHhcccchhhhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcc-C-CCccc
Confidence              0                          00    0244667788888888999999999999999887652 1 11235


Q ss_pred             ccchHHhhhccCCCcccccccccCchhHHHHHHHHHHH
Q 006898          554 VSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCH  591 (626)
Q Consensus       554 i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~  591 (626)
                      .+|.|. .+-.|+...+|.         .|..-|..+.
T Consensus      1377 cvPtLI-AL~Tdp~~~~r~---------~Ad~LL~eid 1404 (1692)
T KOG1020|consen 1377 CVPTLI-ALETDPSQAIRH---------VADELLKEID 1404 (1692)
T ss_pred             hhhhhe-eecCChHHHHHH---------HHHHHHHHHH
Confidence            788888 899999999999         6666665553

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.19  E-value=2e-08  Score=99.28  Aligned_cols=392  Identities=17%  Similarity=0.114  Sum_probs=227.9

Q ss_pred             ccCCchHHHHHHHHHHhcc-ccccCCcchhhcchHHHhhhhc-CcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHH-
Q 006898           56 NNDDDDEVLLAMAEELGVF-IPYVGGVEHAHVLLPPLETLCT-VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKR-  132 (626)
Q Consensus        56 ~~~~~~~vr~~~~~~l~~~-~~~~~~~~~~~~l~~~l~~l~~-~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-  132 (626)
                      ..|.++++|...+..++-+ +...+  ...+.+.......+. +.+..+-..-..++-.++...++......+.--... 
T Consensus        88 ~fDs~~s~~~K~~~l~~~l~~~~~~--~s~d~I~~~~~~~lr~e~~~~vLa~~~~~l~~~g~~~~~~~~~i~l~~~~a~~  165 (823)
T KOG2259|consen   88 IFDSDESSRKKLAILLGILEADFEN--GSTDAISDYASLELRAECSDHVLAQYLDNLLAIGCPVCEEDIYILLLHGVAKV  165 (823)
T ss_pred             hccccchhhhHHHHHhhHhhhhhcc--CchhHHHHHHHHhhcccchhHHHHHHHHHHHHhccCCCchhhHHHHHhhhHHH
Confidence            4567777887777777766 22221  122333333222222 223334333444444444444332221111111111 


Q ss_pred             HhcCCccchhHHHhhHhHHhcCCCCh--HHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHh
Q 006898          133 LAAGEWFTARVSACGLFHIAYPSAPD--ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDL  210 (626)
Q Consensus       133 l~~~~~~~~r~~a~~~l~~~~~~~~~--~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l  210 (626)
                      .....+...|..+......+....++  ...+.+..-+..+.+|.+++||.+|++++-.+.+.+   .....++....+.
T Consensus       166 ~~~~~s~~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~---kL~~~~Y~~A~~~  242 (823)
T KOG2259|consen  166 RSSISSTGNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGF---KLSKACYSRAVKH  242 (823)
T ss_pred             hhhcccccchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccc---cccHHHHHHHHHH
Confidence            11122233444444433333322221  233445555778889999999999999998887733   3345577788889


Q ss_pred             hcCCchhHHHHHHHHHHHhhcccCc--------hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchH
Q 006898          211 TQDDQDSVRLLAVEGCAALGKLLEP--------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLV  282 (626)
Q Consensus       211 ~~d~~~~vr~~a~~~l~~l~~~~~~--------~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~  282 (626)
                      +.|++..||.+|++.+..+++..+.        ....+..+..+...+.|.++.||-.+++.||.+.....     +-+.
T Consensus       243 lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe-----e~i~  317 (823)
T KOG2259|consen  243 LSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE-----EIIQ  317 (823)
T ss_pred             hcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH-----HHHH
Confidence            9999999999999999888887732        12334466667788899999999999999998765421     1122


Q ss_pred             HHHH-HhcCC-ChHHHHHHHHHhHHHHH---H------hhChHHH---HHhhHH-----HHHHhccCCCHHHHHHHHHHH
Q 006898          283 PAYV-RLLRD-NEAEVRIAAAGKVTKFC---R------ILNPELA---IQHILP-----CVKELSSDSSQHVRSALASVI  343 (626)
Q Consensus       283 ~~l~-~~l~d-~~~~vr~~a~~~l~~l~---~------~~~~~~~---~~~l~~-----~l~~l~~d~~~~vr~~~~~~l  343 (626)
                      ..+. +++++ ..+......-+.+..=+   .      ..+.+..   ...++|     .+...++|.-..||.++...+
T Consensus       318 QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl  397 (823)
T KOG2259|consen  318 QTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASL  397 (823)
T ss_pred             HHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHH
Confidence            2222 12221 10111111111111111   1      1111110   122333     345667888899999999999


Q ss_pred             HhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 006898          344 MGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL  423 (626)
Q Consensus       344 ~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~  423 (626)
                      +.++..-+  .|....+..+..+++|+...||..|+.+|..+...+..   .+..++.+.+.+.|.+..+|.++-+.+..
T Consensus       398 ~~La~ssP--~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i---~eeql~~il~~L~D~s~dvRe~l~elL~~  472 (823)
T KOG2259|consen  398 CSLATSSP--GFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAI---REEQLRQILESLEDRSVDVREALRELLKN  472 (823)
T ss_pred             HHHHcCCC--CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhee---cHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            99885432  34566788899999999999999999999998877443   36788999999999999999998877764


Q ss_pred             HHHhhChhh---HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhC
Q 006898          424 LASQLGVGF---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG  468 (626)
Q Consensus       424 l~~~~~~~~---~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~  468 (626)
                      . +....+.   ....++..+-.+-+|.+     ....|++.+.+..+
T Consensus       473 ~-~~~d~~~i~m~v~~lL~~L~kyPqDrd-----~i~~cm~~iGqnH~  514 (823)
T KOG2259|consen  473 A-RVSDLECIDMCVAHLLKNLGKYPQDRD-----EILRCMGRIGQNHR  514 (823)
T ss_pred             c-CCCcHHHHHHHHHHHHHHhhhCCCCcH-----HHHHHHHHHhccCh
Confidence            2 1111221   12333333433445543     55567777766544

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.19  E-value=3.4e-08  Score=97.69  Aligned_cols=212  Identities=17%  Similarity=0.167  Sum_probs=113.2

Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhc--H------
Q 006898          281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG--K------  352 (626)
Q Consensus       281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~--~------  352 (626)
                      +...+..+.+|.++.||.+|+++|-.+.+  |.. +.+.+.....+++.|.+..||.++.+.+..++...+  .      
T Consensus       199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~e--g~k-L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e  275 (823)
T KOG2259|consen  199 AARGLIYLEHDQDFRVRTHAVEGLLALSE--GFK-LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEE  275 (823)
T ss_pred             HHHHHHHHhcCCCcchHHHHHHHHHhhcc--ccc-ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence            44445566667777777777777766666  221 123444555666677777777777766666655441  1      


Q ss_pred             HHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHH----hhHHH----------------------------
Q 006898          353 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS----QSLLP----------------------------  400 (626)
Q Consensus       353 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~----~~i~~----------------------------  400 (626)
                      ....+..+..+...+.|....||..|+++||.+.+. +.+.+.    ++++.                            
T Consensus       276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~v-See~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~  354 (823)
T KOG2259|consen  276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQV-SEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWN  354 (823)
T ss_pred             hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHh-HHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcccc
Confidence            111223344445556677777777777777766432 111111    11111                            


Q ss_pred             ----------------------HHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHH
Q 006898          401 ----------------------AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAAN  458 (626)
Q Consensus       401 ----------------------~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~  458 (626)
                                            .+..-++|.-+.||.+++..+..++..-  ..|...-+..+..+++|....||..|..
T Consensus       355 advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss--P~FA~~aldfLvDMfNDE~~~VRL~ai~  432 (823)
T KOG2259|consen  355 ADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS--PGFAVRALDFLVDMFNDEIEVVRLKAIF  432 (823)
T ss_pred             ccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC--CCcHHHHHHHHHHHhccHHHHHHHHHHH
Confidence                                  1111123333456666666666655322  1233344555566666666666666666


Q ss_pred             HHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHH
Q 006898          459 NLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISL  501 (626)
Q Consensus       459 ~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~  501 (626)
                      +|..+...+.   +.+..++.+.+.+.|.+.++|.+.-..++.
T Consensus       433 aL~~Is~~l~---i~eeql~~il~~L~D~s~dvRe~l~elL~~  472 (823)
T KOG2259|consen  433 ALTMISVHLA---IREEQLRQILESLEDRSVDVREALRELLKN  472 (823)
T ss_pred             HHHHHHHHhe---ecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            6666655532   234455666666666666666665555553

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.18  E-value=2.9e-07  Score=93.56  Aligned_cols=389  Identities=14%  Similarity=0.149  Sum_probs=221.3

Q ss_pred             ccCCchHHHHHHHHHHhccccccCCcchhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhc
Q 006898           56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAA  135 (626)
Q Consensus        56 ~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~  135 (626)
                      +++++--|...|.-++|++..    ++....+.|.+.++++++++.||+.|+.|.-++....|.  +.+.+++-..+++.
T Consensus       116 L~s~nq~vVglAL~alg~i~s----~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~--l~e~f~~~~~~lL~  189 (866)
T KOG1062|consen  116 LNSSNQYVVGLALCALGNICS----PEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPD--LVEHFVIAFRKLLC  189 (866)
T ss_pred             ccCCCeeehHHHHHHhhccCC----HHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCch--HHHHhhHHHHHHHh
Confidence            555666666677777777643    667777888888888888888888888888877776653  34556666666666


Q ss_pred             CCccchhHHHhhHhHHhcCCCCh------HHHHHHHHHHHHhcCC-----------CCHHHHHHHHHhHHHHHHhhCc--
Q 006898          136 GEWFTARVSACGLFHIAYPSAPD------ILKTELRSIYTQLCQD-----------DMPMVRRSAASNLGKFAATVEP--  196 (626)
Q Consensus       136 ~~~~~~r~~a~~~l~~~~~~~~~------~~~~~l~~~l~~l~~d-----------~~~~vR~~a~~~l~~l~~~~~~--  196 (626)
                      +++..|-.++..++-.++...++      ...+.++.++.++...           ++|-.+..+++.|.-+.+.-.+  
T Consensus       190 ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daS  269 (866)
T KOG1062|consen  190 EKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADAS  269 (866)
T ss_pred             hcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHH
Confidence            66666666555555555544321      2344444444443221           2334444444444433332221  


Q ss_pred             -----------------cchhhhHHHHHHHhh--cCCchhHHHHHHHHHHHhhcccCch-----------------hhhh
Q 006898          197 -----------------AHLKTDIMSIFEDLT--QDDQDSVRLLAVEGCAALGKLLEPQ-----------------DCVA  240 (626)
Q Consensus       197 -----------------~~~~~~ll~~l~~l~--~d~~~~vr~~a~~~l~~l~~~~~~~-----------------~~~~  240 (626)
                                       ....+.|+--....+  -+++...|..|+.+|+.|...-...                 ....
T Consensus       270 d~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avq  349 (866)
T KOG1062|consen  270 DLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQ  349 (866)
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHH
Confidence                             111122222111111  1245567777777777766433221                 0111


Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChH--HHHH
Q 006898          241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQ  318 (626)
Q Consensus       241 ~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~  318 (626)
                      .=-..+..+++|++..+|+.+.+....+...-.    ...++.-++..+...+++.+..++..+..+++.+.++  ++.+
T Consensus       350 rHr~tIleCL~DpD~SIkrralELs~~lvn~~N----v~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~id  425 (866)
T KOG1062|consen  350 RHRSTILECLKDPDVSIKRRALELSYALVNESN----VRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHID  425 (866)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHhcccc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHH
Confidence            123356677889999999998888777664322    2345555666666667889998888888888887766  3444


Q ss_pred             hhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHH--hHHHHH-HH-hhcCCCHHHHHHHHHhhHHHHhhhch---
Q 006898          319 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIE--QLLPIF-LS-LLKDEFPDVRLNIISKLDQVNQVIGI---  391 (626)
Q Consensus       319 ~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~--~l~~~l-~~-~l~d~~~~vr~~a~~~L~~~~~~~~~---  391 (626)
                      .++..+...-+--++.+-...+..   ++..++......  .+...+ .. .+.-+.+...+.+.+++|+.+..+-.   
T Consensus       426 tml~Vl~~aG~~V~~dv~~nll~L---Ia~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~  502 (866)
T KOG1062|consen  426 TMLKVLKTAGDFVNDDVVNNLLRL---IANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGAN  502 (866)
T ss_pred             HHHHHHHhcccccchhhHHHHHHH---HhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCcc
Confidence            554444443332233333333322   233333221111  111111 11 11223455677889999998754322   


Q ss_pred             -----hhHHhhHHHHHHHHhcC--CChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 006898          392 -----DLLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANN  459 (626)
Q Consensus       392 -----~~~~~~i~~~l~~~~~~--~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~  459 (626)
                           ..-.+.++..+.+++..  .+..++..++.++.++...+...  .+.+-.++..+...-+.++++.|.+.
T Consensus       503 ~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~--~~ri~~lI~~~~~s~~~elQQRa~E~  575 (866)
T KOG1062|consen  503 EEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS--SERIKQLISSYKSSLDTELQQRAVEY  575 (866)
T ss_pred             ccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc--HHHHHHHHHHhcccccHHHHHHHHHH
Confidence                 11124566666666543  35788999999999988776553  45566666677777788899888875

>TIGR02270 conserved hypothetical protein

Probab=99.17  E-value=8.5e-09  Score=101.70  Aligned_cols=239  Identities=15%  Similarity=0.049  Sum_probs=120.3

Q ss_pred             HHHHHHhc-CCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhH
Q 006898          165 RSIYTQLC-QDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHIL  243 (626)
Q Consensus       165 ~~~l~~l~-~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~  243 (626)
                      ++.+...+ .+++..++..++.++.....        ...+..+...+.|.++.||..+.++|+.+.        .+...
T Consensus        56 ~~~L~~aL~~d~~~ev~~~aa~al~~~~~--------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~--------~~~a~  119 (410)
T TIGR02270        56 TELLVSALAEADEPGRVACAALALLAQED--------ALDLRSVLAVLQAGPEGLCAGIQAALGWLG--------GRQAE  119 (410)
T ss_pred             HHHHHHHHhhCCChhHHHHHHHHHhccCC--------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCC--------chHHH
Confidence            34444444 35555665554444432100        112455555566666666666666665432        23445


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHH
Q 006898          244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPC  323 (626)
Q Consensus       244 ~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~  323 (626)
                      +.+..++.++++.||..++.+++...         .+-.+.+..+++|+++.||..|+.+++.+..        ....|.
T Consensus       120 ~~L~~~L~~~~p~vR~aal~al~~r~---------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~--------~~a~~~  182 (410)
T TIGR02270       120 PWLEPLLAASEPPGRAIGLAALGAHR---------HDPGPALEAALTHEDALVRAAALRALGELPR--------RLSEST  182 (410)
T ss_pred             HHHHHHhcCCChHHHHHHHHHHHhhc---------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcc--------ccchHH
Confidence            55555556666666666655554411         1223455555666666666666666666543        233444


Q ss_pred             HHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHH
Q 006898          324 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV  403 (626)
Q Consensus       324 l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~  403 (626)
                      +...+.|.++.||.+++..+..++.    +    .-++.+.....+....++..+...+...    +.    ..+++.|.
T Consensus       183 L~~al~d~~~~VR~aA~~al~~lG~----~----~A~~~l~~~~~~~g~~~~~~l~~~lal~----~~----~~a~~~L~  246 (410)
T TIGR02270       183 LRLYLRDSDPEVRFAALEAGLLAGS----R----LAWGVCRRFQVLEGGPHRQRLLVLLAVA----GG----PDAQAWLR  246 (410)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHcCC----H----hHHHHHHHHHhccCccHHHHHHHHHHhC----Cc----hhHHHHHH
Confidence            5555666666666666666555431    1    1122333333344444433333333322    11    24555555


Q ss_pred             HHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 006898          404 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLA  464 (626)
Q Consensus       404 ~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~  464 (626)
                      .+++++.  +|..++.+++.+..        ...++.++..+.|+.  +|..|.+++..|.
T Consensus       247 ~ll~d~~--vr~~a~~AlG~lg~--------p~av~~L~~~l~d~~--~aR~A~eA~~~It  295 (410)
T TIGR02270       247 ELLQAAA--TRREALRAVGLVGD--------VEAAPWCLEAMREPP--WARLAGEAFSLIT  295 (410)
T ss_pred             HHhcChh--hHHHHHHHHHHcCC--------cchHHHHHHHhcCcH--HHHHHHHHHHHhh
Confidence            5555544  56666665554431        224455555555443  6666666666664

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.17  E-value=6.4e-06  Score=87.82  Aligned_cols=506  Identities=11%  Similarity=0.071  Sum_probs=298.0

Q ss_pred             cCCchHHHHHHHHHHhccccccCCcchhhcchHH-HhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHh-
Q 006898           57 NDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP-LETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLA-  134 (626)
Q Consensus        57 ~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~-l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~-  134 (626)
                      .+..+++-.++.+++.++.+..-  .+.+.+..- +..+++-+-..+-..+.+.+..+++.+++ ....++.|.+..+. 
T Consensus       322 ~s~~~e~~q~a~q~l~~il~~sv--~~~~~~c~~~~~~~l~~kf~~~~~~ilqi~s~~fek~G~-~s~~~l~~~L~~l~~  398 (1176)
T KOG1248|consen  322 ESLIEELVQAASQSLKEILKESV--TVIDALCSKQLHSLLDYKFHAVWRFILQILSALFEKCGE-LSGPELTKTLEGLCD  398 (1176)
T ss_pred             hcccHHHHHHHHHHHHHHhcccC--cccHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhhh-hcCHHHHHHHHHHHH
Confidence            45677777777788777765322  122333332 44444444444555566666666666655 22334445444433 


Q ss_pred             --cCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhc
Q 006898          135 --AGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ  212 (626)
Q Consensus       135 --~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~  212 (626)
                        .+++...+...-.+++......+++..-.++|+=+  ..+...-.|.-.+=.|...+....-..|.++++|+...+..
T Consensus       399 lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl--~~~s~~~~RsWLLPvLR~~i~~A~La~F~~~ivpla~sl~~  476 (1176)
T KOG1248|consen  399 LRASPDFFHKLQLDQCIGSAVRAMGPERVLTILPLNL--HAESLSFTRSWLLPVLRDYIIGASLAFFTEYIVPLAMSLQL  476 (1176)
T ss_pred             hhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcchhc--cccccccchhHhHHHHHHhhccCcHHHHHHHHHHHHHHHHH
Confidence              23444555566677888888888776666666544  22222334444444444433333334566677776555421


Q ss_pred             ------CCc--h-hHHHHHHHH---HHHhhcccCc-hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC--C--
Q 006898          213 ------DDQ--D-SVRLLAVEG---CAALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--E--  275 (626)
Q Consensus       213 ------d~~--~-~vr~~a~~~---l~~l~~~~~~-~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~--  275 (626)
                            +..  . .++....+.   |+.++..-.. +.-...+.|.+...+.- .+..|...+.+|..+......  +  
T Consensus       477 K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~-~~elr~~Ic~sL~~Lv~~n~~~~~a~  555 (1176)
T KOG1248|consen  477 KAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLK-RPELRETICNSLRMLVEQNKPSSDAA  555 (1176)
T ss_pred             HHHhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhc-chHhHHHHHHHHHHHHHcCCCcchHH
Confidence                  111  1 122222222   2223322111 22244555665555443 338899999988888765310  0  


Q ss_pred             -------ccccchHHHHHHhcCCCh------HHHHHHHHHhHH-HHHHhhChHHHHHhhHHHHHHhccCCCHHHH----H
Q 006898          276 -------PTRMDLVPAYVRLLRDNE------AEVRIAAAGKVT-KFCRILNPELAIQHILPCVKELSSDSSQHVR----S  337 (626)
Q Consensus       276 -------~~~~~l~~~l~~~l~d~~------~~vr~~a~~~l~-~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr----~  337 (626)
                             ......+|.+.+......      ...|...+.... ...+..+.+ +...+...+.++..+.+..++    .
T Consensus       556 e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~d-v~~~l~~s~~e~as~~~~s~~~~~~~  634 (1176)
T KOG1248|consen  556 ENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTD-VVGSLKDSAGELASDLDESVASFKTL  634 (1176)
T ss_pred             HHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHhHhccchhhhhhHHHH
Confidence                   012346777777665433      233443333333 222222332 334455555666666544433    3


Q ss_pred             HHHHHHHhhhhhhcHHHHHHhHHHHHHHhh-cCCCHHHHHHHHHhhHHHHhhhchhhH----HhhHHHHHHHHhcCCChH
Q 006898          338 ALASVIMGMAPLLGKDATIEQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAIVELAEDRHWR  412 (626)
Q Consensus       338 ~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~L~~~~~~~~~~~~----~~~i~~~l~~~~~~~~~~  412 (626)
                      ..+..+..++.....+.+...+  .+...+ +.....++..+.+-|..++..-..+.+    .+.+...+.+-.++....
T Consensus       635 slLdl~~~~a~~~~e~~vs~l~--~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~  712 (1176)
T KOG1248|consen  635 SLLDLLIALAPVQTESQVSKLF--TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSP  712 (1176)
T ss_pred             HHHHHHHhhhccccchhHHHHH--HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchH
Confidence            4444455555555544433322  222333 344789999999999998876221111    245666666667777888


Q ss_pred             HHHHHHHHHHHHHHhhChhhH--HHHHHHHHHHHhcCCchHHHHHHHHHHHHHH--HH---hChH---HHhhhhHHHHHh
Q 006898          413 VRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLQDKVYSIRDAAANNLKRLA--EE---FGPE---WAMQHITPQVLE  482 (626)
Q Consensus       413 ~r~~~~~~l~~l~~~~~~~~~--~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~--~~---~~~~---~~~~~il~~l~~  482 (626)
                      .|...+.++..+.+.++.+.+  ....+|-++-.+.+.+..-|+.|..+|-.++  ..   .|.+   ...+.+++.+..
T Consensus       713 ~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isa  792 (1176)
T KOG1248|consen  713 AQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISA  792 (1176)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHh
Confidence            999999999999998885432  2444554444558888889999999998888  32   2322   244667777776


Q ss_pred             hhcCCChHHHHHHHHHHHHhccccC---hHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc---hhhhcccc
Q 006898          483 MINNPHYLYRMTILRAISLLAPVMG---SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---VSTFSVSP  556 (626)
Q Consensus       483 ~l~~~~~~vR~~a~~~l~~i~~~~~---~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~---~~~~~i~~  556 (626)
                      .+-.....++...+-+++.+....+   ...+.+.++..+..++..+.+.++..|+..+..+...++..   .+.+.++|
T Consensus       793 gl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~  872 (1176)
T KOG1248|consen  793 GLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLP  872 (1176)
T ss_pred             hhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHH
Confidence            6656666666665667777665332   34577889999999999999999999999999999888764   56677899


Q ss_pred             hHHhhhccCCCccccc
Q 006898          557 FSFMLYLNVNNFNVGF  572 (626)
Q Consensus       557 ~l~~~l~~d~d~~vr~  572 (626)
                      .+. ++..|....+|.
T Consensus       873 sll-~ls~d~k~~~r~  887 (1176)
T KOG1248|consen  873 SLL-ALSHDHKIKVRK  887 (1176)
T ss_pred             HHH-HHHHhhhHHHHH
Confidence            999 899998888887

>TIGR02270 conserved hypothetical protein

Probab=99.16  E-value=1.2e-08  Score=100.77  Aligned_cols=240  Identities=15%  Similarity=0.073  Sum_probs=163.8

Q ss_pred             HHHHHHHhh-cCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccch
Q 006898          203 IMSIFEDLT-QDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDL  281 (626)
Q Consensus       203 ll~~l~~l~-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l  281 (626)
                      .++.+...+ .|++..++..+..++....        ....+..+...+.|.+..||..++++|+.+.        ....
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~--------~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~--------~~~a  118 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALLAQE--------DALDLRSVLAVLQAGPEGLCAGIQAALGWLG--------GRQA  118 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHhccC--------ChHHHHHHHHHhcCCCHHHHHHHHHHHhcCC--------chHH
Confidence            455555556 5677788877666664321        1223677778888899999999999998654        3567


Q ss_pred             HHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHH
Q 006898          282 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLP  361 (626)
Q Consensus       282 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~  361 (626)
                      .+.+..++++.++.+|..++.+++....         .-.+.+..+++|+++.||..++.+++.+..        ....|
T Consensus       119 ~~~L~~~L~~~~p~vR~aal~al~~r~~---------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~--------~~a~~  181 (410)
T TIGR02270       119 EPWLEPLLAASEPPGRAIGLAALGAHRH---------DPGPALEAALTHEDALVRAAALRALGELPR--------RLSES  181 (410)
T ss_pred             HHHHHHHhcCCChHHHHHHHHHHHhhcc---------ChHHHHHHHhcCCCHHHHHHHHHHHHhhcc--------ccchH
Confidence            7888889999999999888877776332         123556666789999999999999988863        23455


Q ss_pred             HHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHH
Q 006898          362 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC  441 (626)
Q Consensus       362 ~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l  441 (626)
                      .+...+.|.++.||.+|+.+++.+..        ....+.+..+..++.+..+..+...+...    +.    +..++.+
T Consensus       182 ~L~~al~d~~~~VR~aA~~al~~lG~--------~~A~~~l~~~~~~~g~~~~~~l~~~lal~----~~----~~a~~~L  245 (410)
T TIGR02270       182 TLRLYLRDSDPEVRFAALEAGLLAGS--------RLAWGVCRRFQVLEGGPHRQRLLVLLAVA----GG----PDAQAWL  245 (410)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHcCC--------HhHHHHHHHHHhccCccHHHHHHHHHHhC----Cc----hhHHHHH
Confidence            56777899999999999999977643        23344555545555554444433333322    22    2456667


Q ss_pred             HHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 006898          442 MQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLA  503 (626)
Q Consensus       442 ~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~  503 (626)
                      ..+++|+.  +|..++.++|.+..        ...++.+.+.+.|+.  +|..+.+++..|.
T Consensus       246 ~~ll~d~~--vr~~a~~AlG~lg~--------p~av~~L~~~l~d~~--~aR~A~eA~~~It  295 (410)
T TIGR02270       246 RELLQAAA--TRREALRAVGLVGD--------VEAAPWCLEAMREPP--WARLAGEAFSLIT  295 (410)
T ss_pred             HHHhcChh--hHHHHHHHHHHcCC--------cchHHHHHHHhcCcH--HHHHHHHHHHHhh
Confidence            77777755  88888888876632        235677777776654  7888888888775

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.14  E-value=7.2e-10  Score=100.57  Aligned_cols=265  Identities=12%  Similarity=0.078  Sum_probs=182.0

Q ss_pred             HhhHHHHHHhc-cCCCHHHHHHHHHHHHhhhhhhcHH---HHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhc-h-
Q 006898          318 QHILPCVKELS-SDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-I-  391 (626)
Q Consensus       318 ~~l~~~l~~l~-~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~-~-  391 (626)
                      ..++|.+.+++ +.......-.++.++..+++.-...   ......+|.+.++|.+.+.+||..++.+|+.+..... - 
T Consensus       113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~R  192 (526)
T COG5064         113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCR  192 (526)
T ss_pred             ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHH
Confidence            45567777766 3344455567777777776533221   1123467888888888888899999998888753211 0 


Q ss_pred             -hhHHhhHHHHHHHHhcCCC--hHHHHHHHHHHHHHHHhhChhh---HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Q 006898          392 -DLLSQSLLPAIVELAEDRH--WRVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE  465 (626)
Q Consensus       392 -~~~~~~i~~~l~~~~~~~~--~~~r~~~~~~l~~l~~~~~~~~---~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~  465 (626)
                       -.+.-..+..++.++.+..  ..+-..+.-.++.++.+-.+..   .....+|++.+++...+++|-.-|++++..+..
T Consensus       193 D~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsD  272 (526)
T COG5064         193 DYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSD  272 (526)
T ss_pred             HHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcc
Confidence             0111234455555555433  2444445556777766544322   335679999999999999999999999999876


Q ss_pred             HhChH---HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChH---HhhhcHHHHHhhhCCCCCchHHHHHHHHHH
Q 006898          466 EFGPE---WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKVLQ  539 (626)
Q Consensus       466 ~~~~~---~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~  539 (626)
                      .-...   .....+.+.|.+++.+++..+..-+++.+|+++..-+..   .+.-..++.+..++.++..++|..||+++.
T Consensus       273 g~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiS  352 (526)
T COG5064         273 GPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTIS  352 (526)
T ss_pred             CcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeec
Confidence            43221   123556788999999999999999999999998643322   233457788888899999999999999999


Q ss_pred             HHHhhhcc---chhhhcccchHHhhhccCCCcccccccccCchhHHHHHHHHHHHH
Q 006898          540 SLIPIVDQ---SVSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCHR  592 (626)
Q Consensus       540 ~i~~~~~~---~~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~~  592 (626)
                      +|---.-.   ......+.|.|. .++...+..++-         -|++|++...+
T Consensus       353 NITAGnteqiqavid~nliPpLi-~lls~ae~k~kK---------EACWAisNats  398 (526)
T COG5064         353 NITAGNTEQIQAVIDANLIPPLI-HLLSSAEYKIKK---------EACWAISNATS  398 (526)
T ss_pred             ccccCCHHHHHHHHhcccchHHH-HHHHHHHHHHHH---------HHHHHHHhhhc
Confidence            97432111   244567888888 888888888888         89999987643

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.14  E-value=4.5e-06  Score=83.99  Aligned_cols=400  Identities=14%  Similarity=0.074  Sum_probs=211.3

Q ss_pred             HHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhh
Q 006898          122 LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKT  201 (626)
Q Consensus       122 ~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~  201 (626)
                      +...+.+-+..+++..-+.+|..|+.++-.++-.-++ ....-+|-|..-++|+++.|..+|...+..+++..++.. . 
T Consensus       141 LARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe-Alr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny-L-  217 (877)
T KOG1059|consen  141 LARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPE-ALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY-L-  217 (877)
T ss_pred             hhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhH-hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc-c-
Confidence            3344556666677777778888887777666544432 334455666777889999999999999999998766543 2 


Q ss_pred             hHHHHHHHhhcCC--chhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHH---hCC-C
Q 006898          202 DIMSIFEDLTQDD--QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA---VGP-E  275 (626)
Q Consensus       202 ~ll~~l~~l~~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~---~~~-~  275 (626)
                      .+-|.|.+++.+.  +| +-...++.++++...-++  .-..++|.+..++.+.+.  .....+|+..+...   .|- +
T Consensus       218 ~LAP~ffkllttSsNNW-mLIKiiKLF~aLtplEPR--LgKKLieplt~li~sT~A--mSLlYECvNTVVa~s~s~g~~d  292 (877)
T KOG1059|consen  218 QLAPLFYKLLVTSSNNW-VLIKLLKLFAALTPLEPR--LGKKLIEPITELMESTVA--MSLLYECVNTVVAVSMSSGMSD  292 (877)
T ss_pred             cccHHHHHHHhccCCCe-ehHHHHHHHhhccccCch--hhhhhhhHHHHHHHhhHH--HHHHHHHHHHheeehhccCCCC
Confidence            2557777766543  44 333455566655533222  234567777776654432  12223333333322   111 1


Q ss_pred             --ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHH
Q 006898          276 --PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD  353 (626)
Q Consensus       276 --~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~  353 (626)
                        ....-.+.-+..++.|.+++.+--.+-++.++++.-+..  .+.--..+.+.+.|.++.+|.-++..+-.+...   +
T Consensus       293 ~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~--Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVsk---k  367 (877)
T KOG1059|consen  293 HSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKA--VQAHKDLILRCLDDKDESIRLRALDLLYGMVSK---K  367 (877)
T ss_pred             cHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHH--HHHhHHHHHHHhccCCchhHHHHHHHHHHHhhh---h
Confidence              112235555666778888899888888888887642221  233345567778899999998888777766532   2


Q ss_pred             HHHHhHHHHHHHhhcCCC-HHHHHHHHHhhHHHHhhhchhhH--HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh
Q 006898          354 ATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV  430 (626)
Q Consensus       354 ~~~~~l~~~l~~~l~d~~-~~vr~~a~~~L~~~~~~~~~~~~--~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~  430 (626)
                      . ...++..++..+.+.+ ...|...+..+-.+|..-....+  .+..+..+.++.+=+..+.-.-..+.+..++-  ..
T Consensus       368 N-l~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~i--RV  444 (877)
T KOG1059|consen  368 N-LMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAI--RV  444 (877)
T ss_pred             h-HHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHhe--ec
Confidence            2 2234444554444333 36666666555555543322211  12234444444332221111111111111110  00


Q ss_pred             hhHHHHHHHHHHHHhcCC-----------chHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCC-ChHHH----HH
Q 006898          431 GFFDDKLGALCMQWLQDK-----------VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNP-HYLYR----MT  494 (626)
Q Consensus       431 ~~~~~~l~p~l~~~l~d~-----------~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~-~~~vR----~~  494 (626)
                      ....+..+..+..++.|+           -.+|-.+|+|++|.+...+...   ..++..+.+--.+- ...+.    ++
T Consensus       445 ~~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven~---~~~leamlrpr~~~lp~~iq~vyvqn  521 (877)
T KOG1059|consen  445 PSIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVENP---NDTLEAMLRPRSDLLPGHIQAVYVQN  521 (877)
T ss_pred             hhhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHhhCH---HHHHHHHhcCccccCchHHHHHHHHH
Confidence            011111222222333322           3567789999999998876543   22333333211111 11222    23


Q ss_pred             HHHHHHHhccccChH-------HhhhcHHHHHhhhCCCCCchHHHHHHHHHHH
Q 006898          495 ILRAISLLAPVMGSE-------ITCSRLLPVVINASKDRVPNIKFNVAKVLQS  540 (626)
Q Consensus       495 a~~~l~~i~~~~~~~-------~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~  540 (626)
                      +...+..++....+.       ...+.++..|-.+....+-+|+..|-.++.-
T Consensus       522 i~Klfc~~~~~~ee~~~~e~~~sL~~~i~~~l~qf~~s~d~EvQERA~~~~~l  574 (877)
T KOG1059|consen  522 IVKLFCSWCSQFEETKDFEGIVSLVNLILSFLEQFSGSSDLEVQERASEVLEL  574 (877)
T ss_pred             HHHHHHHHHhhcCcccchhHHHHHHHHHHHHhhcccCccchhHHHHHHHHHHH
Confidence            333333333332221       1235566667777778888888886555543

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.12  E-value=1.5e-06  Score=88.42  Aligned_cols=386  Identities=12%  Similarity=0.108  Sum_probs=219.5

Q ss_pred             chhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHH
Q 006898          140 TARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVR  219 (626)
Q Consensus       140 ~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr  219 (626)
                      .....++-.++.+...++++....+.|.+..++++.++.||+.|+.+..++....+  ...+.+++.+.+++.+.+.-|-
T Consensus       119 ~nq~vVglAL~alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P--~l~e~f~~~~~~lL~ek~hGVL  196 (866)
T KOG1062|consen  119 SNQYVVGLALCALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVP--DLVEHFVIAFRKLLCEKHHGVL  196 (866)
T ss_pred             CCeeehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCc--hHHHHhhHHHHHHHhhcCCcee
Confidence            33445555666666677788888888888888888888899988888888877654  4456677777777777666666


Q ss_pred             HHHHHHHHHhhcccCc-----hhhhhhhHHHHHHh-----------------------------cCCCCHHHHHHHHHHH
Q 006898          220 LLAVEGCAALGKLLEP-----QDCVAHILPVIVNF-----------------------------SQDKSWRVRYMVANQL  265 (626)
Q Consensus       220 ~~a~~~l~~l~~~~~~-----~~~~~~i~~~l~~~-----------------------------~~d~~~~vR~~a~~~l  265 (626)
                      .+++..+..+++..+.     ....+.++..++++                             +...+..........|
T Consensus       197 ~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiL  276 (866)
T KOG1062|consen  197 IAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDIL  276 (866)
T ss_pred             eeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence            5555555555554221     12233333333222                             2223333334444555


Q ss_pred             HHHHHHhCCC--ccccchHHHHHHhcC-CChHHHHHHHHHhHHHHHHhhChH-----------------HHHHhhHHHHH
Q 006898          266 YELCEAVGPE--PTRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPE-----------------LAIQHILPCVK  325 (626)
Q Consensus       266 ~~l~~~~~~~--~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~-----------------~~~~~l~~~l~  325 (626)
                      ++++......  ....-+.+.+...+. +++...|..|+..|++|...-+..                 ...+.=-..+.
T Consensus       277 aqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIl  356 (866)
T KOG1062|consen  277 AQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTIL  356 (866)
T ss_pred             HHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHH
Confidence            5555432211  111123333333332 455788999999998887643211                 01122223455


Q ss_pred             HhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHH
Q 006898          326 ELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL  405 (626)
Q Consensus       326 ~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~  405 (626)
                      +.++|++..+|+-+.+..-.+...-.    ...++.-++.+|...+++.+...+..+..+.+.+.++..  ..+..+.+.
T Consensus       357 eCL~DpD~SIkrralELs~~lvn~~N----v~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~--W~idtml~V  430 (866)
T KOG1062|consen  357 ECLKDPDVSIKRRALELSYALVNESN----VRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKR--WHIDTMLKV  430 (866)
T ss_pred             HHhcCCcHHHHHHHHHHHHHHhcccc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcch--hHHHHHHHH
Confidence            66789999999988887777654322    334555566666666888998888888888888877642  233444444


Q ss_pred             hcCCChHHHHHHHHHHHHHH-HhhChhhHHHHHHHHHHHH-----hcCCchHHHHHHHHHHHHHHHHhCh--------HH
Q 006898          406 AEDRHWRVRLAIIEYIPLLA-SQLGVGFFDDKLGALCMQW-----LQDKVYSIRDAAANNLKRLAEEFGP--------EW  471 (626)
Q Consensus       406 ~~~~~~~~r~~~~~~l~~l~-~~~~~~~~~~~l~p~l~~~-----l~d~~~~VR~~a~~~l~~l~~~~~~--------~~  471 (626)
                      +....-.++......+-.+. ++++...- ..........     +.-+....-+.+.||+|...+.+-.        ..
T Consensus       431 l~~aG~~V~~dv~~nll~LIa~~~~e~~~-y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~v  509 (866)
T KOG1062|consen  431 LKTAGDFVNDDVVNNLLRLIANAFQELHE-YAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKV  509 (866)
T ss_pred             HHhcccccchhhHHHHHHHHhcCCcchhh-HHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcC
Confidence            43333334444443333332 23232211 1111111111     1223445677899999998854321        11


Q ss_pred             HhhhhHHHHHhhhcC--CChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHHHHHH
Q 006898          472 AMQHITPQVLEMINN--PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAK  536 (626)
Q Consensus       472 ~~~~il~~l~~~l~~--~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~  536 (626)
                      ....++..+.+.+..  .+..+|..++.++..+...+...  .+++-..+..+...-+.++++.|.+
T Consensus       510 tesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~--~~ri~~lI~~~~~s~~~elQQRa~E  574 (866)
T KOG1062|consen  510 TESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS--SERIKQLISSYKSSLDTELQQRAVE  574 (866)
T ss_pred             CHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc--HHHHHHHHHHhcccccHHHHHHHHH
Confidence            235677777776543  45889999999999887654432  2334444444444555555555543

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.11  E-value=1.1e-07  Score=96.65  Aligned_cols=510  Identities=13%  Similarity=0.133  Sum_probs=261.8

Q ss_pred             CCCcccHHHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhcccccccc-CCchHHHHHHHHHHhccccccCCcch
Q 006898            5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN-DDDDEVLLAMAEELGVFIPYVGGVEH   83 (626)
Q Consensus         5 ~~~~~~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~-~~~~~vr~~~~~~l~~~~~~~~~~~~   83 (626)
                      +++...+..+...+.|.-...|..|++.+-.- ..+|.+  ...+.|-+..+. -.+-+..+.+-.-+.+.++  +.+..
T Consensus         9 ~~~k~ei~elks~l~s~~~~kr~~a~kkvIa~-Mt~G~D--vSslF~dvvk~~~T~dlelKKlvyLYl~nYa~--~~P~~   83 (734)
T KOG1061|consen    9 TDKKGEIPELKSQLNSQSKEKRKDAVKKVIAY-MTVGKD--VSSLFPDVVKCMQTRDLELKKLVYLYLMNYAK--GKPDL   83 (734)
T ss_pred             cchhhhchHHHHHhhhhhhhhHHHHHHHHHhc-CccCcc--hHhhhHHHHhhcccCCchHHHHHHHHHHHhhc--cCchH
Confidence            44556677777788777777777776554432 234432  344554444432 2345555555555666555  22333


Q ss_pred             hhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChH-HHH
Q 006898           84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKT  162 (626)
Q Consensus        84 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~-~~~  162 (626)
                      .-..++.+.+=..|+++.+|..|++.++.+    .-..+.+++..-+.+..+|+++.+|..++.+...+...-++. ...
T Consensus        84 a~~avnt~~kD~~d~np~iR~lAlrtm~~l----~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~  159 (734)
T KOG1061|consen   84 AILAVNTFLKDCEDPNPLIRALALRTMGCL----RVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDS  159 (734)
T ss_pred             HHhhhhhhhccCCCCCHHHHHHHhhceeeE----eehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhcccc
Confidence            334444455556677888888777766543    333444555555666777777888888877777776655543 445


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccc---hhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchh-h
Q 006898          163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH---LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD-C  238 (626)
Q Consensus       163 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~-~  238 (626)
                      .+.+.+..++.|+++.|=..|..++..+.+.-+...   ....++..++..++.-+.-   .-+..+..+....+++. -
T Consensus       160 gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW---~qi~IL~~l~~y~p~d~~e  236 (734)
T KOG1061|consen  160 GLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEW---GQIFILDCLAEYVPKDSRE  236 (734)
T ss_pred             chhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhh---hHHHHHHHHHhcCCCCchh
Confidence            567777777778888888888888888777654311   1122222222222221111   11222222223332211 1


Q ss_pred             hhhhHHHHHHhcCCCCH----------------------------------------HHHHHHHHHHHHHHHHhCCCccc
Q 006898          239 VAHILPVIVNFSQDKSW----------------------------------------RVRYMVANQLYELCEAVGPEPTR  278 (626)
Q Consensus       239 ~~~i~~~l~~~~~d~~~----------------------------------------~vR~~a~~~l~~l~~~~~~~~~~  278 (626)
                      ...++..+...+.+.+.                                        .+...+...+..+....++ ...
T Consensus       237 a~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~-~~~  315 (734)
T KOG1061|consen  237 AEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPE-ILK  315 (734)
T ss_pred             HHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccchhhHHHHhhHHHHHHhChH-HHH
Confidence            11122222222222222                                        3444444444333333221 100


Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHh
Q 006898          279 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQ  358 (626)
Q Consensus       279 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~  358 (626)
                      .++.-.+.+ ..|+. .|+..-++.+..++.   .+. .+.++.-+.+...+.+...-+.++++++.++-...+.   ..
T Consensus       316 ~~~~~Ff~k-ynDPi-YvK~eKleil~~la~---~~n-l~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~---~~  386 (734)
T KOG1061|consen  316 VEIKVFFCK-YNDPI-YVKLEKLEILIELAN---DAN-LAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS---ND  386 (734)
T ss_pred             hHhHeeeee-cCCch-hhHHHHHHHHHHHhh---HhH-HHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh---hh
Confidence            010000000 01111 233333333333222   111 2345666666677777777777788888887655443   56


Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcC-CChHHHHHHHHHHHHHHHhhChhhHHHHH
Q 006898          359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKL  437 (626)
Q Consensus       359 l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~~~~~~~~l  437 (626)
                      +++.++.+++-....|-+.+...+..+....+...  +.+.+.+.....+ .++.-|.+.+-.++.-++.....   ..+
T Consensus       387 cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~--~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~a---~el  461 (734)
T KOG1061|consen  387 CVSILLELLETKVDYVVQEAIVVIRDILRKYPNKY--ESVVAILCENLDSLQEPEAKAALIWILGEYAERIENA---LEL  461 (734)
T ss_pred             hHHHHHHHHhhcccceeeehhHHHHhhhhcCCCch--hhhhhhhcccccccCChHHHHHHHHHHhhhhhccCcH---HHH
Confidence            77778888775555555566666666655544322  4455555444333 35667777777777766655442   346


Q ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhh-hcC-CChHHHHHHHHHHHHhccccChH----Hh
Q 006898          438 GALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM-INN-PHYLYRMTILRAISLLAPVMGSE----IT  511 (626)
Q Consensus       438 ~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~-l~~-~~~~vR~~a~~~l~~i~~~~~~~----~~  511 (626)
                      +..+...+.|....|+..-..+.-+++-....  ..++.+..++.. ..| .++++|-.++....-+..  ++.    ..
T Consensus       462 L~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~--~tq~~l~~vL~~~~~d~~~~dlrDr~l~Y~RlLs~--~~~~a~~v~  537 (734)
T KOG1061|consen  462 LESFLENFKDETAEVQLELLTAAIKLFLKKPT--ETQELLQGVLPLATADTDNPDLRDRGLIYWRLLSE--DPLIAKDVV  537 (734)
T ss_pred             HHHHHhhcccchHHHHHHHHHHHHHHHhcCCc--cHHHHHHHHHhhhhccccChhhhhhHHHHHHHhhc--CHHHHHHHH
Confidence            66677778888888876665555444433332  234455555543 333 356777666654443331  221    11


Q ss_pred             hhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhc
Q 006898          512 CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  546 (626)
Q Consensus       512 ~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~  546 (626)
                      .... |.+.......++.+-.....-++.+...+.
T Consensus       538 ~~~k-P~is~~~~~~~p~~le~l~~~i~tlssVY~  571 (734)
T KOG1061|consen  538 LAEK-PLISEETDSLDPTLLEELLCDIGTLSSVYH  571 (734)
T ss_pred             hcCC-CccccCCCCCCchHHHHHHHhhccccceee
Confidence            1111 333333333556666666666666665553

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.10  E-value=6.8e-06  Score=82.74  Aligned_cols=230  Identities=14%  Similarity=0.094  Sum_probs=154.6

Q ss_pred             hHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHH
Q 006898          149 FHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAA  228 (626)
Q Consensus       149 l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~  228 (626)
                      ++.+....++....++-+-+..++++..+.+|+.|.-.+-.+....+.  ....-+|-|.+-+.|+|+.|..+|+..+-.
T Consensus       130 L~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe--Alr~~FprL~EkLeDpDp~V~SAAV~VICE  207 (877)
T KOG1059|consen  130 LSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPE--ALRPCFPRLVEKLEDPDPSVVSAAVSVICE  207 (877)
T ss_pred             ecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhH--hHhhhHHHHHHhccCCCchHHHHHHHHHHH
Confidence            333444445566677888888999999999999999998887765543  233456778888999999999999999998


Q ss_pred             hhcccCchhhhhhhHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCh-HHHHHHHHHhHH
Q 006898          229 LGKLLEPQDCVAHILPVIVNFS--QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNE-AEVRIAAAGKVT  305 (626)
Q Consensus       229 l~~~~~~~~~~~~i~~~l~~~~--~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~  305 (626)
                      ++..-+.. + -.+-|.+.+++  ++.+|. -.-.++.|+.+...-+.  ....++|.+.++++... ..+--.|+.++-
T Consensus       208 LArKnPkn-y-L~LAP~ffkllttSsNNWm-LIKiiKLF~aLtplEPR--LgKKLieplt~li~sT~AmSLlYECvNTVV  282 (877)
T KOG1059|consen  208 LARKNPQN-Y-LQLAPLFYKLLVTSSNNWV-LIKLLKLFAALTPLEPR--LGKKLIEPITELMESTVAMSLLYECVNTVV  282 (877)
T ss_pred             HHhhCCcc-c-ccccHHHHHHHhccCCCee-hHHHHHHHhhccccCch--hhhhhhhHHHHHHHhhHHHHHHHHHHHHhe
Confidence            88776653 2 23456665554  345664 33345666666543111  12467888888887654 233334444433


Q ss_pred             HHHHhhCh---HHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhh
Q 006898          306 KFCRILNP---ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKL  382 (626)
Q Consensus       306 ~l~~~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L  382 (626)
                      ...-..|.   ....+-.+..+..++.|.++.+|.-.+-+++.+++..+..  ...--..++.+|.|.|+++|..|+.-+
T Consensus       283 a~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~--Vqa~kdlIlrcL~DkD~SIRlrALdLl  360 (877)
T KOG1059|consen  283 AVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKA--VQAHKDLILRCLDDKDESIRLRALDLL  360 (877)
T ss_pred             eehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHH--HHHhHHHHHHHhccCCchhHHHHHHHH
Confidence            22111121   1233455666777889999999999999999988765442  233456789999999999999999888


Q ss_pred             HHHHh
Q 006898          383 DQVNQ  387 (626)
Q Consensus       383 ~~~~~  387 (626)
                      ..+..
T Consensus       361 ~gmVs  365 (877)
T KOG1059|consen  361 YGMVS  365 (877)
T ss_pred             HHHhh
Confidence            77654

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.05  E-value=3.4e-06  Score=85.72  Aligned_cols=457  Identities=12%  Similarity=0.083  Sum_probs=249.0

Q ss_pred             cccccccCCchHHHHHHHHHHhccccccCCcchhhcchHHHhhh---hcCcchHHHHHHHHHHHHHHhhcChhhHHHhHH
Q 006898           51 PFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETL---CTVEETCVRDKAVESLCRIGSQMRESDLVDWYI  127 (626)
Q Consensus        51 ~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l---~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~  127 (626)
                      ...+..+..++..|+..--.++.+...-      ...+-....+   .+..++.+|-.|+++|..|...---.    .+-
T Consensus        68 ~~tKlfQskd~~LRr~vYl~Ikels~is------edviivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~----~ie  137 (865)
T KOG1078|consen   68 AITKLFQSKDVSLRRMVYLAIKELSKIS------EDVIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQ----AIE  137 (865)
T ss_pred             HHHHHHhhcCHHHHHHHHHHHhhccccc------hhhhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcchhH----HHH
Confidence            3334456778888888888888765521      2222223333   34457778888888888775532111    223


Q ss_pred             HHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHH
Q 006898          128 PLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIF  207 (626)
Q Consensus       128 ~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l  207 (626)
                      .++.+..-|.+..++..+.-.--.+.+ ..................+.+..++..+...+..+.+.-  ....+.++..+
T Consensus       138 ry~kqaivd~~~avSsaalvss~hll~-~~~~~vkrw~neiqea~~s~~~m~QyHalglLyqirk~d--rla~sklv~~~  214 (865)
T KOG1078|consen  138 RYMKQAIVDKNPAVSSAALVSSYHLLP-ISFDVVKRWANEVQEAVNSDNIMVQYHALGLLYQIRKND--RLAVSKLVQKF  214 (865)
T ss_pred             HHHHhHeeccccccchHHHHHHhhhhc-ccHHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHH
Confidence            334444455554444332211111111 222333444444444445555566666655555553321  11222233322


Q ss_pred             HH-hhcCCch--hHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHH
Q 006898          208 ED-LTQDDQD--SVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPA  284 (626)
Q Consensus       208 ~~-l~~d~~~--~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~  284 (626)
                      .+ .+.++-.  ..-..+...+..-      ......+.+++..++.++...|-..++.++..+....+.+..+  .+..
T Consensus       215 ~~~~~~~~~A~~~lir~~~~~l~~~------~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p--avs~  286 (865)
T KOG1078|consen  215 TRGSLKSPLAVCMLIRIASELLKEN------QQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP--AVSV  286 (865)
T ss_pred             ccccccchhHHHHHHHHHHHHhhhc------ccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch--HHHH
Confidence            22 1122211  0001111122111      2234567888888889888888888888887776554444332  5566


Q ss_pred             HHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHH
Q 006898          285 YVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFL  364 (626)
Q Consensus       285 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~  364 (626)
                      +..+++.+.+-+|-+|...|.+++...+...  ...=+-+..+.+|.+..+-.-++..+-.-    |.+...+.++..+.
T Consensus       287 Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v--~~cN~elE~lItd~NrsIat~AITtLLKT----G~e~sv~rLm~qI~  360 (865)
T KOG1078|consen  287 LQLFLSSPKVALRFAAVRTLNKVAMKHPQAV--TVCNLDLESLITDSNRSIATLAITTLLKT----GTESSVDRLMKQIS  360 (865)
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHHHhCCccc--cccchhHHhhhcccccchhHHHHHHHHHh----cchhHHHHHHHHHH
Confidence            6677788888999999999998877543321  22223456667777765544444333332    33444555665555


Q ss_pred             HhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhc-CCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHH
Q 006898          365 SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ  443 (626)
Q Consensus       365 ~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~  443 (626)
                      .+..|-+.+-+.-+..++..++..+...+  ..+++.+.+++. +.....+.+.++++..+.......  ++.-+..+..
T Consensus       361 ~fv~disDeFKivvvdai~sLc~~fp~k~--~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pds--Ke~~L~~LCe  436 (865)
T KOG1078|consen  361 SFVSDISDEFKIVVVDAIRSLCLKFPRKH--TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDS--KERGLEHLCE  436 (865)
T ss_pred             HHHHhccccceEEeHHHHHHHHhhccHHH--HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcch--hhHHHHHHHH
Confidence            55554444444444445555555444433  356677777665 445777788888877776643221  1112222333


Q ss_pred             HhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhC
Q 006898          444 WLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINAS  523 (626)
Q Consensus       444 ~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l  523 (626)
                      .+.|..  .+.-+...+..+.............+-.+.+..-=.|..+|.+|+.++.+++  .+.+...+.+.-.+.+++
T Consensus       437 fIEDce--~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~  512 (865)
T KOG1078|consen  437 FIEDCE--FTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCL  512 (865)
T ss_pred             HHHhcc--chHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHh
Confidence            333332  2333444444444332211112333444444444468889999999999988  344445567777888899


Q ss_pred             CCCCchHHHHHHHHHHHHH
Q 006898          524 KDRVPNIKFNVAKVLQSLI  542 (626)
Q Consensus       524 ~d~~~~vR~~a~~~l~~i~  542 (626)
                      .|++.+||..|.-.+..+-
T Consensus       513 ~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  513 NDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             cCchHHHHHHHHHHHHHhh
Confidence            9999999999988888776

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=99.04  E-value=5.6e-09  Score=96.92  Aligned_cols=187  Identities=14%  Similarity=0.169  Sum_probs=132.2

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh----hhHHH---HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh
Q 006898          397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV----GFFDD---KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP  469 (626)
Q Consensus       397 ~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~----~~~~~---~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~  469 (626)
                      .+.+.+.+-..+.+|..|..++..+..+......    ..+.+   .+.+.+...+.|....|-..|+.+++.++..++.
T Consensus         7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~   86 (228)
T PF12348_consen    7 EILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS   86 (228)
T ss_dssp             GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Confidence            3444444444678899999999999998876611    12222   2335666778888888999999999999999887


Q ss_pred             HH--HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhhcH-HHHHhhhCCCCCchHHHHHHHHHHHHHhhhc
Q 006898          470 EW--AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRL-LPVVINASKDRVPNIKFNVAKVLQSLIPIVD  546 (626)
Q Consensus       470 ~~--~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~-l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~  546 (626)
                      .+  ..+.++|.|.+.+.+++..+|..+..++..+++.++.   ...+ .+.+....+++++.+|..++..+..+....+
T Consensus        87 ~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~---~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~  163 (228)
T PF12348_consen   87 HFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSY---SPKILLEILSQGLKSKNPQVREECAEWLAIILEKWG  163 (228)
T ss_dssp             GGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred             hHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence            63  3478999999999999999999999999999998871   1334 7888889999999999999999999998888


Q ss_pred             --cc-----hhhhcccchHHhhhccCCCcccccccccCchhHHHHHHHHHHHHHhhc
Q 006898          547 --QS-----VSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCHRWWRK  596 (626)
Q Consensus       547 --~~-----~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~~~~~~  596 (626)
                        .+     ...+.+.+.+. +.++|++.+||.         +|..++..+.+..+.
T Consensus       164 ~~~~~l~~~~~~~~l~~~l~-~~l~D~~~~VR~---------~Ar~~~~~l~~~~~~  210 (228)
T PF12348_consen  164 SDSSVLQKSAFLKQLVKALV-KLLSDADPEVRE---------AARECLWALYSHFPE  210 (228)
T ss_dssp             ---GGG--HHHHHHHHHHHH-HHHTSS-HHHHH---------HHHHHHHHHHHHH-H
T ss_pred             chHhhhcccchHHHHHHHHH-HHCCCCCHHHHH---------HHHHHHHHHHHHCCH
Confidence              22     12357889999 999999999999         999999888766543

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=99.04  E-value=1.1e-07  Score=90.66  Aligned_cols=446  Identities=11%  Similarity=0.079  Sum_probs=240.2

Q ss_pred             chHHHHHHHHHHHHHHhhcChhhHHHhHHHHH------------HHHhcCCccchhHHHhhHhHHhcCCC----------
Q 006898           99 ETCVRDKAVESLCRIGSQMRESDLVDWYIPLV------------KRLAAGEWFTARVSACGLFHIAYPSA----------  156 (626)
Q Consensus        99 ~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l------------~~l~~~~~~~~r~~a~~~l~~~~~~~----------  156 (626)
                      +..||..|..++....+.+++..+.+++-.++            .-.++|++++.|..|.+..+.+....          
T Consensus         9 ~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~   88 (728)
T KOG4535|consen    9 QAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDT   88 (728)
T ss_pred             HHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhcc
Confidence            55688888888888888877766555532222            11246777778877776665544321          


Q ss_pred             -----ChH------HHHHHHHHHH-HhcCCCCHHHHHHHHHhHHHHHHhhCcc----chhhhHHHHHHHhhcCCchhHHH
Q 006898          157 -----PDI------LKTELRSIYT-QLCQDDMPMVRRSAASNLGKFAATVEPA----HLKTDIMSIFEDLTQDDQDSVRL  220 (626)
Q Consensus       157 -----~~~------~~~~l~~~l~-~l~~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~ll~~l~~l~~d~~~~vr~  220 (626)
                           .+.      ...++...++ .+....++.+-..+++++..+++..+-.    .+..++...+..++.+.++.||.
T Consensus        89 ~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~v  168 (728)
T KOG4535|consen   89 SDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRV  168 (728)
T ss_pred             CCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhh
Confidence                 110      1122222333 3344556777778899999998876532    33455667777888999999999


Q ss_pred             HHHHHHHHhhcccCc--h----------------------hhhhh------------------------------hHHHH
Q 006898          221 LAVEGCAALGKLLEP--Q----------------------DCVAH------------------------------ILPVI  246 (626)
Q Consensus       221 ~a~~~l~~l~~~~~~--~----------------------~~~~~------------------------------i~~~l  246 (626)
                      .++..++.+......  +                      +.+++                              +.|..
T Consensus       169 s~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~  248 (728)
T KOG4535|consen  169 SSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLP  248 (728)
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecC
Confidence            999998887643221  0                      00000                              00000


Q ss_pred             HH----------hcCC--CCHHHHHHHHHHHHHHHHHhCCCc-cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCh
Q 006898          247 VN----------FSQD--KSWRVRYMVANQLYELCEAVGPEP-TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP  313 (626)
Q Consensus       247 ~~----------~~~d--~~~~vR~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  313 (626)
                      .+          ....  ....+|-.+.+.+..++.++|-.. ...++...+...+.+.+|.++..+...+.+++...+.
T Consensus       249 ~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~  328 (728)
T KOG4535|consen  249 KEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQ  328 (728)
T ss_pred             CccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhh
Confidence            00          0000  012356666666776766655211 1123444455556788889999888888888775542


Q ss_pred             HH--------HHHh-hHHHHH-----Hhc-cCCCHHHHHHHHHHHHhhhhhhcH--HHHHHhHHHHHHHhhcCC-CHHHH
Q 006898          314 EL--------AIQH-ILPCVK-----ELS-SDSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDE-FPDVR  375 (626)
Q Consensus       314 ~~--------~~~~-l~~~l~-----~l~-~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~-~~~vr  375 (626)
                      +.        .... +...+.     ... +...+....+.|..+..++..-..  +.-.....+.+.....|. +.-|+
T Consensus       329 ~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~  408 (728)
T KOG4535|consen  329 QYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVK  408 (728)
T ss_pred             hcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHH
Confidence            21        0001 000000     001 112234455666666666542110  111123445555555544 34566


Q ss_pred             HHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHH
Q 006898          376 LNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDA  455 (626)
Q Consensus       376 ~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~  455 (626)
                      .+|.++++-+.-+-+...                   .|...                 ..-...+...+.|+..++|..
T Consensus       409 ~aA~Ra~~VyVLHp~lr~-------------------d~~fv-----------------~~aa~~il~sl~d~~ln~r~K  452 (728)
T KOG4535|consen  409 AAASRALGVYVLHPCLRQ-------------------DVIFV-----------------ADAANAILMSLEDKSLNVRAK  452 (728)
T ss_pred             HHHHhhceeEEeccchhh-------------------hHHHH-----------------HHHHHHHHHHhhhHhHhHHHH
Confidence            667666654432211100                   00000                 011112333445556666667


Q ss_pred             HHHHHHHHHHHhCh-----HHHh----hhhHHHHHhh---hcCCChHHHHHHHHHHHHhccccCh------HHhh-hcHH
Q 006898          456 AANNLKRLAEEFGP-----EWAM----QHITPQVLEM---INNPHYLYRMTILRAISLLAPVMGS------EITC-SRLL  516 (626)
Q Consensus       456 a~~~l~~l~~~~~~-----~~~~----~~il~~l~~~---l~~~~~~vR~~a~~~l~~i~~~~~~------~~~~-~~~l  516 (626)
                      ++++++.|...+-.     +-..    ..++..+...   ..-.+++||..+.++++++.+.+.+      .... ....
T Consensus       453 aawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~  532 (728)
T KOG4535|consen  453 AAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQ  532 (728)
T ss_pred             HHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHH
Confidence            77776666654311     1111    2222222222   1224788999999999998765442      1111 1222


Q ss_pred             HHHhhhCCCCCchHHHHHHHHHHHHHhhh----ccchhhhcccchHHhhhc-cCCCcccccccccCchhHHHHHHHHHH
Q 006898          517 PVVINASKDRVPNIKFNVAKVLQSLIPIV----DQSVSTFSVSPFSFMLYL-NVNNFNVGFIFAAFPLVLFSCLALNYC  590 (626)
Q Consensus       517 ~~l~~~l~d~~~~vR~~a~~~l~~i~~~~----~~~~~~~~i~~~l~~~l~-~d~d~~vr~~~~~~~~~~~a~~al~~~  590 (626)
                      ..+..-.......||+++|.+++++..+-    .+..+...++++|. .+. +..+..||.         .|+.||.+.
T Consensus       533 ~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~-~Lv~~~~NFKVRi---------~AA~aL~vp  601 (728)
T KOG4535|consen  533 ALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALT-SLVTSCKNFKVRI---------RAAAALSVP  601 (728)
T ss_pred             hcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHH-HHHHHhccceEee---------hhhhhhcCC
Confidence            22222334556789999999999998653    23467778899988 654 567889999         777776654

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=99.04  E-value=6.8e-09  Score=104.13  Aligned_cols=256  Identities=13%  Similarity=0.197  Sum_probs=207.9

Q ss_pred             CCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcC
Q 006898          290 RDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD  369 (626)
Q Consensus       290 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d  369 (626)
                      .=.+.+-|..-...|....+.+..+.....++|.+...+.-.+  --..+...+-.++..+..+.+...++|.+.++++-
T Consensus       264 ~lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~  341 (690)
T KOG1243|consen  264 RLKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKS  341 (690)
T ss_pred             ccCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccccccchhhhHHHHhcC
Confidence            3344566777777777777777777777777887766543222  01111222233444455556777899999999999


Q ss_pred             CCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCc
Q 006898          370 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKV  449 (626)
Q Consensus       370 ~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~  449 (626)
                      .+..+|...+..+..+...+.++.+.+.|+|.+...+.|.+..+|...+..+..++..+++......++..+-++-.|..
T Consensus       342 ~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~  421 (690)
T KOG1243|consen  342 PDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEH  421 (690)
T ss_pred             cchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999988777889999988888999


Q ss_pred             hHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCch
Q 006898          450 YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPN  529 (626)
Q Consensus       450 ~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~  529 (626)
                      ..+|..+.-|++++...+........+...+..-+.|+-..-|.++..++..-.+.+.......+++|.+.-+..|++..
T Consensus       422 ~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~~  501 (690)
T KOG1243|consen  422 GGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEKT  501 (690)
T ss_pred             CcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCcccc
Confidence            99999999999999888766543344444455568899889999999999999999988889999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcc
Q 006898          530 IKFNVAKVLQSLIPIVDQ  547 (626)
Q Consensus       530 vR~~a~~~l~~i~~~~~~  547 (626)
                      ||..|..++.........
T Consensus       502 vr~~a~~~i~~fl~kl~~  519 (690)
T KOG1243|consen  502 VRDTAEKAIRQFLEKLEK  519 (690)
T ss_pred             hhhHHHHHHHHHHhhhhh
Confidence            999999999988776543

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.03  E-value=1.8e-06  Score=87.67  Aligned_cols=458  Identities=12%  Similarity=0.098  Sum_probs=260.6

Q ss_pred             HHHHhcCccHHHHHHHHhhHHHHHHhhChHhh--hhhhccccccccCCchHHHHHHHHHHhccccccCCcchhhcchHHH
Q 006898           14 LIDELKNDDIQLRLNSIRRLSTIARALGEERT--RKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPL   91 (626)
Q Consensus        14 l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~--~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l   91 (626)
                      +...+++.|...|.+...+++++..... +..  -+.++..   ....++.+|..+.+.|-.+..    ......+-.++
T Consensus        69 ~tKlfQskd~~LRr~vYl~Ikels~ise-dviivtsslmkD---~t~~~d~yr~~AiR~L~~I~d----~~m~~~iery~  140 (865)
T KOG1078|consen   69 ITKLFQSKDVSLRRMVYLAIKELSKISE-DVIIVTSSLMKD---MTGKEDLYRAAAIRALCSIID----GTMLQAIERYM  140 (865)
T ss_pred             HHHHHhhcCHHHHHHHHHHHhhccccch-hhhhhhHHHHhh---ccCCCcchhHHHHHHHHhhcC----cchhHHHHHHH
Confidence            3345789999999999888888744221 111  1112211   234466778888888877655    22344555667


Q ss_pred             hhhhcCcchHHHHHHHHHHHHHHhhcCh-hhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHH
Q 006898           92 ETLCTVEETCVRDKAVESLCRIGSQMRE-SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQ  170 (626)
Q Consensus        92 ~~l~~~~~~~vR~~a~~~l~~i~~~~~~-~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~  170 (626)
                      ...+.|+++.++.+|.-.=   ...++. ......+..-+.....+++.-+++.+..++..+-.+.. -....++..+..
T Consensus       141 kqaivd~~~avSsaalvss---~hll~~~~~~vkrw~neiqea~~s~~~m~QyHalglLyqirk~dr-la~sklv~~~~~  216 (865)
T KOG1078|consen  141 KQAIVDKNPAVSSAALVSS---YHLLPISFDVVKRWANEVQEAVNSDNIMVQYHALGLLYQIRKNDR-LAVSKLVQKFTR  216 (865)
T ss_pred             HhHeeccccccchHHHHHH---hhhhcccHHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHcc
Confidence            7777888888777653211   111111 12222233334444444444455566665555433211 111222222222


Q ss_pred             -hcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHh
Q 006898          171 -LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNF  249 (626)
Q Consensus       171 -l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~  249 (626)
                       .+.+  +--+-...+....+...  .+.....+.+.+..++.+....|-..+..++..+....+.+  ....+..+..+
T Consensus       217 ~~~~~--~~A~~~lir~~~~~l~~--~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~--l~pavs~Lq~f  290 (865)
T KOG1078|consen  217 GSLKS--PLAVCMLIRIASELLKE--NQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRE--LAPAVSVLQLF  290 (865)
T ss_pred             ccccc--hhHHHHHHHHHHHHhhh--cccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhh--cchHHHHHHHH
Confidence             1111  11111111111111111  12334567888889999888888888888887766555543  22266777888


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhcc
Q 006898          250 SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS  329 (626)
Q Consensus       250 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~  329 (626)
                      ++.+....|.++...|..++...+....  ..-.-+..+..|.+..+..-|+.++-+-+.    +.-...++..+.....
T Consensus       291 lssp~~~lRfaAvRtLnkvAm~~P~~v~--~cN~elE~lItd~NrsIat~AITtLLKTG~----e~sv~rLm~qI~~fv~  364 (865)
T KOG1078|consen  291 LSSPKVALRFAAVRTLNKVAMKHPQAVT--VCNLDLESLITDSNRSIATLAITTLLKTGT----ESSVDRLMKQISSFVS  364 (865)
T ss_pred             hcCcHHHHHHHHHHHHHHHHHhCCcccc--ccchhHHhhhcccccchhHHHHHHHHHhcc----hhHHHHHHHHHHHHHH
Confidence            9999999999999999999987664432  233445667788876666555555544333    2222444444444445


Q ss_pred             CCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcC-CCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcC
Q 006898          330 DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED  408 (626)
Q Consensus       330 d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~  408 (626)
                      |-+...+..+.+++..++..++..  ...+++.+.++|++ ...+-+.+.+.++..+++.....+  +..+..+..+++|
T Consensus       365 disDeFKivvvdai~sLc~~fp~k--~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsK--e~~L~~LCefIED  440 (865)
T KOG1078|consen  365 DISDEFKIVVVDAIRSLCLKFPRK--HTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSK--ERGLEHLCEFIED  440 (865)
T ss_pred             hccccceEEeHHHHHHHHhhccHH--HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchh--hHHHHHHHHHHHh
Confidence            544444555555666666555543  23456667777664 345667777777777766544333  3455666666655


Q ss_pred             CChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCC
Q 006898          409 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPH  488 (626)
Q Consensus       409 ~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~  488 (626)
                      -.  .+..+...+..+++........+..+-.+.....=.+..||.+|+.++.++.  .+.......+...+..++.|++
T Consensus       441 ce--~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~~D~D  516 (865)
T KOG1078|consen  441 CE--FTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCLNDSD  516 (865)
T ss_pred             cc--chHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHhcCch
Confidence            43  3344445555554433222111222222333333357889999999999987  4444456677777788899999


Q ss_pred             hHHHHHHHHHHHHhc
Q 006898          489 YLYRMTILRAISLLA  503 (626)
Q Consensus       489 ~~vR~~a~~~l~~i~  503 (626)
                      ..+|..|..++..+-
T Consensus       517 devRdrAtf~l~~l~  531 (865)
T KOG1078|consen  517 DEVRDRATFYLKNLE  531 (865)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999988888775

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.02  E-value=1.4e-05  Score=80.22  Aligned_cols=448  Identities=14%  Similarity=0.108  Sum_probs=234.7

Q ss_pred             ccCCchHHHHHHHHHHhccccccCCcchhhcchHHHhhhhc--CcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHH
Q 006898           56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCT--VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRL  133 (626)
Q Consensus        56 ~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~--~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l  133 (626)
                      +.+.++....-|..+++++    |+.++.+.+.+-+.+++.  +..+.||+.|+-|+-.+.+..+.-.-.+.+..-+..+
T Consensus       120 L~srn~~fv~LAL~~I~ni----G~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~L  195 (938)
T KOG1077|consen  120 LSSRNPTFVCLALHCIANI----GSREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHL  195 (938)
T ss_pred             hhcCCcHHHHHHHHHHHhh----ccHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHH
Confidence            5556777777777888776    555555666665666543  3467799999999999998866533344567777788


Q ss_pred             hcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchh-hhHHHHHHHhhc
Q 006898          134 AAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLK-TDIMSIFEDLTQ  212 (626)
Q Consensus       134 ~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~-~~ll~~l~~l~~  212 (626)
                      ++|....+-.++..++..+..+.++.+..-+...+..+..    .|+..... +....-..-+..+. -.++..+..+-.
T Consensus       196 L~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~r----iv~~~~t~-~qdYTyy~vP~PWL~vKl~rlLq~~p~  270 (938)
T KOG1077|consen  196 LDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSR----IVVVVGTS-LQDYTYYFVPAPWLQVKLLRLLQIYPT  270 (938)
T ss_pred             hCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHH----HHhhcccc-hhhceeecCCChHHHHHHHHHHHhCCC
Confidence            8888888888888899888888887665544433332210    00000000 00000000011111 123333333333


Q ss_pred             CCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC-ccccchHHHHHHhcCC
Q 006898          213 DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE-PTRMDLVPAYVRLLRD  291 (626)
Q Consensus       213 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d  291 (626)
                      -+|+.+|..-.+++..+.....+......+.          ...+..+...-.-.++.++..+ ......+..+-+++.+
T Consensus       271 ~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq----------~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~  340 (938)
T KOG1077|consen  271 PEDPSTRARLNEVLERILNKAQEPPKSKKVQ----------HSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSH  340 (938)
T ss_pred             CCCchHHHHHHHHHHHHHhccccCccccchH----------hhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhc
Confidence            4566778777777777665544211000000          0111222211112223333222 2223445555667778


Q ss_pred             ChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhcc-CCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCC
Q 006898          292 NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS-DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE  370 (626)
Q Consensus       292 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~  370 (626)
                      .+.++|--+++.+..++..-......+.-...+...++ +++..+|+-+...+-.++..-    ..+.++.-+++.+...
T Consensus       341 rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~----Nak~IV~elLqYL~tA  416 (938)
T KOG1077|consen  341 RETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVS----NAKQIVAELLQYLETA  416 (938)
T ss_pred             ccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchh----hHHHHHHHHHHHHhhc
Confidence            88889998888888887753322222222444444444 888999999988887776432    3446677777778778


Q ss_pred             CHHHHHHHHHhhHHHHhhhchh--hHHhhHHHHHHHHhcC----CChHHHHHHHHHHHHHHHh-hChhhHHHHHHHHHHH
Q 006898          371 FPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAED----RHWRVRLAIIEYIPLLASQ-LGVGFFDDKLGALCMQ  443 (626)
Q Consensus       371 ~~~vr~~a~~~L~~~~~~~~~~--~~~~~i~~~l~~~~~~----~~~~~r~~~~~~l~~l~~~-~~~~~~~~~l~p~l~~  443 (626)
                      ++.+|+..+.-.+-+.+.+..+  |+.+.++..+ ++..|    +-|. |         +.+. ...+....+-...++.
T Consensus       417 d~sireeivlKvAILaEKyAtDy~WyVdviLqLi-riagd~vsdeVW~-R---------vvQiVvNnedlq~yaak~~fe  485 (938)
T KOG1077|consen  417 DYSIREEIVLKVAILAEKYATDYSWYVDVILQLI-RIAGDYVSDEVWY-R---------VVQIVVNNEDLQGYAAKRLFE  485 (938)
T ss_pred             chHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHH-HHhcccccHHHHH-H---------hheeEecchhhhHHHHHHHHH
Confidence            8999998888877777766544  4433333322 22222    1121 1         1110 0111111111111222


Q ss_pred             HhcCC--chHHHHHHHHHHHHHHHHhChH--HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhhcHHHHH
Q 006898          444 WLQDK--VYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVV  519 (626)
Q Consensus       444 ~l~d~--~~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l  519 (626)
                      .++.+  ....-..+.-.||.+...+..+  ......+..+-+-+.--+...|...+...-.++...+ + ....+...+
T Consensus       486 ~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr~lLLtTyiKl~nl~P-E-i~~~v~~vF  563 (938)
T KOG1077|consen  486 YLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRALLLTTYIKLINLFP-E-IKSNVQKVF  563 (938)
T ss_pred             HHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhCh-h-hhHHHHHHH
Confidence            22211  1222233333444443332211  0112223333333444456667666666666655432 2 344555566


Q ss_pred             hhhCCCCCchHHHHHHHHHH
Q 006898          520 INASKDRVPNIKFNVAKVLQ  539 (626)
Q Consensus       520 ~~~l~d~~~~vR~~a~~~l~  539 (626)
                      ....+-.+.++++.|++-|.
T Consensus       564 q~~~n~~D~ElQqRa~EYLq  583 (938)
T KOG1077|consen  564 QLYSNLIDVELQQRAVEYLQ  583 (938)
T ss_pred             HhhcccCCHHHHHHHHHHHH
Confidence            66666677788777776654

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=99.02  E-value=4.9e-08  Score=90.63  Aligned_cols=183  Identities=20%  Similarity=0.245  Sum_probs=124.8

Q ss_pred             HHHhcCCChHHHHHHHHHhHHHHHHhhChH----HH---HHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHH--HH
Q 006898          285 YVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LA---IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD--AT  355 (626)
Q Consensus       285 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~---~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~--~~  355 (626)
                      |...-.+.+|+.|..++..+..++..-...    .+   ...+++.+...+.|....|-..++.++..++..++..  .+
T Consensus        12 l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~   91 (228)
T PF12348_consen   12 LEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY   91 (228)
T ss_dssp             HHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH
T ss_pred             HhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH
Confidence            333345666777777777777766644111    11   1223345555666667778888889999998888764  35


Q ss_pred             HHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhH-HHHHHHHhcCCChHHHHHHHHHHHHHHHhhC---hh
Q 006898          356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL-LPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VG  431 (626)
Q Consensus       356 ~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i-~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~---~~  431 (626)
                      .+.++|.++..+.|....+|..|..+|..+++..+..   ..+ .+.+....+++++.+|..+++++..+....+   ..
T Consensus        92 ~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~---~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~  168 (228)
T PF12348_consen   92 ADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYS---PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV  168 (228)
T ss_dssp             HHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred             HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence            6789999999999999999999999999999887611   233 7777888899999999999999999988877   22


Q ss_pred             h----HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChH
Q 006898          432 F----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE  470 (626)
Q Consensus       432 ~----~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~  470 (626)
                      .    ..+.+.+.+..++.|++++||..|-.++..+...+|..
T Consensus       169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~  211 (228)
T PF12348_consen  169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER  211 (228)
T ss_dssp             G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred             hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence            1    23568999999999999999999999999999888765

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.99  E-value=6.7e-05  Score=80.38  Aligned_cols=477  Identities=17%  Similarity=0.126  Sum_probs=269.7

Q ss_pred             HHHhhHHHHHHhhChHhhhhhhcccccc---cc-CCchHHHHHHHHHHhccccccCCcchhhcchHHHhhhhcCcchHHH
Q 006898           28 NSIRRLSTIARALGEERTRKELIPFLSE---NN-DDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVR  103 (626)
Q Consensus        28 ~a~~~l~~i~~~~~~~~~~~~l~~~l~~---~~-~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR  103 (626)
                      ++++.+..+...+|+ ....++.|.|..   +. +++..-+...-+++|..+..+| |+..-.++|+=.  ..+.....|
T Consensus       369 ~ilqi~s~~fek~G~-~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmG-Pe~vL~~lpLnl--~~~s~~~~R  444 (1176)
T KOG1248|consen  369 FILQILSALFEKCGE-LSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMG-PERVLTILPLNL--HAESLSFTR  444 (1176)
T ss_pred             HHHHHHHHHHHHhhh-hcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhC-HHHHHHHcchhc--cccccccch
Confidence            345555555555664 233455555544   11 2222334455556666555555 333333344311  112222223


Q ss_pred             HHHHHHHHHHHhhcChhhHHHhHHHHHHHHhc------CCcc---chhHHHhhHhHHh---cCCCCh--HHHHHHHHHHH
Q 006898          104 DKAVESLCRIGSQMRESDLVDWYIPLVKRLAA------GEWF---TARVSACGLFHIA---YPSAPD--ILKTELRSIYT  169 (626)
Q Consensus       104 ~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~------~~~~---~~r~~a~~~l~~~---~~~~~~--~~~~~l~~~l~  169 (626)
                      .=-.-.|..-...-+-..+.++++|+...+..      ....   ..+....++.+.+   +..-.+  +....+.+.+.
T Consensus       445 sWLLPvLR~~i~~A~La~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~  524 (1176)
T KOG1248|consen  445 SWLLPVLRDYIIGASLAFFTEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILG  524 (1176)
T ss_pred             hHhHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHH
Confidence            21122222211221223445567776654421      1111   1233344444333   222111  34567777777


Q ss_pred             HhcCCCCHHHHHHHHHhHHHHHHhhCcc-----------chhhhHHHHHHHhhcCCch------hHHHHHHHHHHHhhcc
Q 006898          170 QLCQDDMPMVRRSAASNLGKFAATVEPA-----------HLKTDIMSIFEDLTQDDQD------SVRLLAVEGCAALGKL  232 (626)
Q Consensus       170 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~-----------~~~~~ll~~l~~l~~d~~~------~vr~~a~~~l~~l~~~  232 (626)
                      ..+.-. +..|..++.+|..+++...+.           .+...++|.+.+..+....      ..|..-+.......-+
T Consensus       525 ~al~~~-~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~  603 (1176)
T KOG1248|consen  525 AALLKR-PELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFT  603 (1176)
T ss_pred             HHHhcc-hHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhh
Confidence            666554 499999999999998875221           1223466666666543322      3344334333311111


Q ss_pred             cCchhhhhhhHHHHHHhcCCCCHHH----HHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHH
Q 006898          233 LEPQDCVAHILPVIVNFSQDKSWRV----RYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFC  308 (626)
Q Consensus       233 ~~~~~~~~~i~~~l~~~~~d~~~~v----R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~  308 (626)
                      ..+.+....+...+.....+.+..+    +.+....+..++....... ...+..+.-..-+..+..+|..+...|..++
T Consensus       604 ~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~-vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~  682 (1176)
T KOG1248|consen  604 VTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQ-VSKLFTVDPEFENSSSTKVQKKAYRLLEELS  682 (1176)
T ss_pred             cccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchh-HHHHHHhhHHhhccccHHHHHHHHHHHHHHh
Confidence            1122233444444545555544333    2333333333333322221 1222222222334446789999999999988


Q ss_pred             HhhChHH----HHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHH--HHHhHHHHHHHhhcCCCHHHHHHHHHhh
Q 006898          309 RILNPEL----AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKL  382 (626)
Q Consensus       309 ~~~~~~~----~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~L  382 (626)
                      .....+.    ....+...+..-.++.....|...+.++..+.+..+.+.  +....+|-++-.+++.+..-|..+..+|
T Consensus       683 ~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL  762 (1176)
T KOG1248|consen  683 SSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALL  762 (1176)
T ss_pred             cCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHH
Confidence            8632222    234455555555666777888899999999988887433  3445555555555999999999999999


Q ss_pred             HHHH--hh---hchhh---HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC---hhhHHHHHHHHHHHHhcCCchH
Q 006898          383 DQVN--QV---IGIDL---LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYS  451 (626)
Q Consensus       383 ~~~~--~~---~~~~~---~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~---~~~~~~~l~p~l~~~l~d~~~~  451 (626)
                      -.++  +.   .|.+.   ..+..++.+...+-....+++..-+-++..+...++   ...+.+.++..+..++..+...
T Consensus       763 ~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sre  842 (1176)
T KOG1248|consen  763 VFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSRE  842 (1176)
T ss_pred             HHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHH
Confidence            8887  22   23332   224455555544444455555555666666665443   3344566777788889999999


Q ss_pred             HHHHHHHHHHHHHHHhChHH---HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHH
Q 006898          452 IRDAAANNLKRLAEEFGPEW---AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI  510 (626)
Q Consensus       452 VR~~a~~~l~~l~~~~~~~~---~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~  510 (626)
                      ++.+|+..+..++..+....   ..+.++|.+..+..|.+..+|...-..+..+++.+|.+.
T Consensus       843 I~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~e  904 (1176)
T KOG1248|consen  843 IAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEE  904 (1176)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHH
Confidence            99999999999999887653   346789999999999999999999999999999999764

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.99  E-value=5.4e-06  Score=84.72  Aligned_cols=521  Identities=16%  Similarity=0.133  Sum_probs=268.2

Q ss_pred             cCccHHHHHHHHhhHHHHHHhhChHhhhhhhccccccc-cC-CchHHHHHHHHHHhcccccc----CCc------chhhc
Q 006898           19 KNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSEN-ND-DDDEVLLAMAEELGVFIPYV----GGV------EHAHV   86 (626)
Q Consensus        19 ~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~-~~-~~~~vr~~~~~~l~~~~~~~----~~~------~~~~~   86 (626)
                      -++|+..|..|-++|... .   .+  ...-+.+|.-+ ++ -++.+|.+++..+.++++.-    ++.      ...+.
T Consensus        15 l~pdps~rk~aEr~L~~~-e---~q--~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~   88 (960)
T KOG1992|consen   15 LSPDPSVRKPAERALRSL-E---GQ--QNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQ   88 (960)
T ss_pred             CCCCCccCchHHHHHHHh-c---cC--CCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHH
Confidence            367888999888888775 1   11  12222222221 22 27788999998888877731    111      01233


Q ss_pred             chHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChH-----HH
Q 006898           87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-----LK  161 (626)
Q Consensus        87 l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~-----~~  161 (626)
                      +-.++-.+.-+....+...-.+++..+++.-=|+ -++.++|-+..-.+..+..+-.++...-..++.+...+     -+
T Consensus        89 ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~-kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~  167 (960)
T KOG1992|consen   89 IKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPD-KWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALW  167 (960)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHhccccch-hhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHH
Confidence            3334444444444557777777777777643333 35566666655555555555556666666677766432     12


Q ss_pred             HHHH-----------HHHHH---hc--CCCCHHHHHHHHHhHHHHHHhh---C----cc---chhhhHHHHHHHhhcC--
Q 006898          162 TELR-----------SIYTQ---LC--QDDMPMVRRSAASNLGKFAATV---E----PA---HLKTDIMSIFEDLTQD--  213 (626)
Q Consensus       162 ~~l~-----------~~l~~---l~--~d~~~~vR~~a~~~l~~l~~~~---~----~~---~~~~~ll~~l~~l~~d--  213 (626)
                      .+|.           .++.+   ++  .+++...-+.....+--+++.+   .    ++   +..+..++.+.+++.-  
T Consensus       168 ~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~  247 (960)
T KOG1992|consen  168 LEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDN  247 (960)
T ss_pred             HHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccC
Confidence            2211           12221   11  1111111011111111111111   1    11   2233455666666541  


Q ss_pred             ------C-c----hhHHHHHHHHHHHhhcccCc--hhhhhhhHHHHHHhcCCCCHHHH-----HHHHHHHHHHHHHhC--
Q 006898          214 ------D-Q----DSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVR-----YMVANQLYELCEAVG--  273 (626)
Q Consensus       214 ------~-~----~~vr~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~d~~~~vR-----~~a~~~l~~l~~~~~--  273 (626)
                            + +    ..+|...++.+.-.+....+  ..+.+.++...-.++.+.++.+|     ..+.+.|..+++.-.  
T Consensus       248 p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~  327 (960)
T KOG1992|consen  248 PLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYA  327 (960)
T ss_pred             cccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhH
Confidence                  1 1    13455555555444444333  12333344333344433333222     222333333332110  


Q ss_pred             ---------------------------CCccccchHHHHHHhcCCChHH-HHHHHHHhHHHHHHhhChHH---HHHhhHH
Q 006898          274 ---------------------------PEPTRMDLVPAYVRLLRDNEAE-VRIAAAGKVTKFCRILNPEL---AIQHILP  322 (626)
Q Consensus       274 ---------------------------~~~~~~~l~~~l~~~l~d~~~~-vr~~a~~~l~~l~~~~~~~~---~~~~l~~  322 (626)
                                                 .+.+.+.-+.++..-++..|.+ -|++|+..+..+++.+....   +...+-.
T Consensus       328 ~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~  407 (960)
T KOG1992|consen  328 ELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQR  407 (960)
T ss_pred             hhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence                                       0111122344444444444433 36678888888888774331   1122222


Q ss_pred             HHHHhccC--CCHHHHHHHHHHHHhhhhhh-----c----------HHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHH
Q 006898          323 CVKELSSD--SSQHVRSALASVIMGMAPLL-----G----------KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV  385 (626)
Q Consensus       323 ~l~~l~~d--~~~~vr~~~~~~l~~l~~~~-----~----------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~  385 (626)
                      .+.+..++  .+|.-+..++..+..++..-     |          .+++...+.|.+.+-=..+.|-++..+++-+-.+
T Consensus       408 ~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~F  487 (960)
T KOG1992|consen  408 LLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTF  487 (960)
T ss_pred             HHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeee
Confidence            23333444  56888887777766665321     1          2334555555554433345677888888877777


Q ss_pred             HhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh--------hhHHHHHHHHHHHH---hcCCchHHHH
Q 006898          386 NQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--------GFFDDKLGALCMQW---LQDKVYSIRD  454 (626)
Q Consensus       386 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~--------~~~~~~l~p~l~~~---l~d~~~~VR~  454 (626)
                      -+.+|++.+ -.++|.+.+.++.++.-+..-+..++..+....+.        ....+.+.+.+..+   ++-+...--+
T Consensus       488 R~ql~~~~l-m~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~Ene  566 (960)
T KOG1992|consen  488 RNQLGKEHL-MALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENE  566 (960)
T ss_pred             cccCChHHH-HHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccH
Confidence            777887766 45889999999999988888888888887654433        22333333333333   3222222222


Q ss_pred             HHHHHHHHHHHHhChHH------HhhhhHHHHHhhhcCC-ChHHHHHHHHHHHHhccccCh------HHhhhcHHHHHhh
Q 006898          455 AAANNLKRLAEEFGPEW------AMQHITPQVLEMINNP-HYLYRMTILRAISLLAPVMGS------EITCSRLLPVVIN  521 (626)
Q Consensus       455 ~a~~~l~~l~~~~~~~~------~~~~il~~l~~~l~~~-~~~vR~~a~~~l~~i~~~~~~------~~~~~~~l~~l~~  521 (626)
                      ...+++-.+........      ....+...+.+..++| ++..-....+.++.+....+.      ..+...++|.+..
T Consensus       567 ylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~  646 (960)
T KOG1992|consen  567 YLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQT  646 (960)
T ss_pred             HHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH
Confidence            33333333333222211      1223333344445555 566667777777776654322      2366788898888


Q ss_pred             hCCCCCchHHHHHHHHHHHHHhhhcc
Q 006898          522 ASKDRVPNIKFNVAKVLQSLIPIVDQ  547 (626)
Q Consensus       522 ~l~d~~~~vR~~a~~~l~~i~~~~~~  547 (626)
                      .+..+..+.--.+.+.++.+.+..++
T Consensus       647 Il~eDI~EfiPYvfQlla~lve~~~~  672 (960)
T KOG1992|consen  647 ILSEDIQEFIPYVFQLLAVLVEHSSG  672 (960)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            88877777777888888888877655

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.96  E-value=5.9e-06  Score=83.53  Aligned_cols=429  Identities=13%  Similarity=0.153  Sum_probs=219.8

Q ss_pred             cHHHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhcccccc-ccCCchHHHHHHHHHHhccccccCCcchhhcch
Q 006898           10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL   88 (626)
Q Consensus        10 ~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~   88 (626)
                      .-..+.+.|.++|...+.+|++.+-..  .+..+...+-++..+.- +...+-++.+..---+.-+=+.-++.+..++++
T Consensus        21 ~~~~ik~~Lek~~~~~KIeamK~ii~~--mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMI   98 (948)
T KOG1058|consen   21 SEDEIKEKLEKGDDEVKIEAMKKIIAL--MLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMI   98 (948)
T ss_pred             chHHHHHHHhcCChHHHHHHHHHHHHH--HHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHH
Confidence            345788899999999999998877654  22223333333333332 234444444433322222212222122233322


Q ss_pred             H---HHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHH
Q 006898           89 P---PLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELR  165 (626)
Q Consensus        89 ~---~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~  165 (626)
                      =   .+.+=+++|++-+|-...+-+.++    .                                      .++..+.++
T Consensus        99 Lvcna~RkDLQHPNEyiRG~TLRFLckL----k--------------------------------------E~ELlepl~  136 (948)
T KOG1058|consen   99 LVCNAYRKDLQHPNEYIRGSTLRFLCKL----K--------------------------------------EPELLEPLM  136 (948)
T ss_pred             HHHHHHhhhccCchHhhcchhhhhhhhc----C--------------------------------------cHHHhhhhH
Confidence            1   223333445555554333222211    1                                      123455667


Q ss_pred             HHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc--cchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhH
Q 006898          166 SIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHIL  243 (626)
Q Consensus       166 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~  243 (626)
                      |.+..++++.++.||+.|.-++..+-.....  +. .++++..+  +..+.++..+..|+-.|...-    +    +..+
T Consensus       137 p~IracleHrhsYVRrNAilaifsIyk~~~~L~pD-apeLi~~f--L~~e~DpsCkRNAFi~L~~~D----~----ErAl  205 (948)
T KOG1058|consen  137 PSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPD-APELIESF--LLTEQDPSCKRNAFLMLFTTD----P----ERAL  205 (948)
T ss_pred             HHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCC-hHHHHHHH--HHhccCchhHHHHHHHHHhcC----H----HHHH
Confidence            7777888888888999888888777664211  01 11222221  234556677666665554321    1    1222


Q ss_pred             HHHHHhcC---CCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhh
Q 006898          244 PVIVNFSQ---DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI  320 (626)
Q Consensus       244 ~~l~~~~~---d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l  320 (626)
                      .++...+.   +-+.......++.+...+..-+  ......+..+..++..+++.|+-.|+.++..+..  .+..+ +.-
T Consensus       206 ~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p--~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~--~p~al-k~A  280 (948)
T KOG1058|consen  206 NYLLSNIDQIPSFNDSLQLVIVELIRKVCLANP--AEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSN--DPTAL-KAA  280 (948)
T ss_pred             HHHHhhHhhccCccHHHHHHHHHHHHHHHhcCH--HHhhHHHHHHHHHHhcCCchhhhhhcceEEEccC--CHHHH-HHH
Confidence            22222211   1123334444444444443111  1123455666667776677777777666655443  11111 111


Q ss_pred             HHHHHHh-ccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHH
Q 006898          321 LPCVKEL-SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL  399 (626)
Q Consensus       321 ~~~l~~l-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~  399 (626)
                      ...+..+ .+.++-+++-....-+..+..  +.+...+.++--++..|..++-+||..++.-.-.+......+.+.+.+-
T Consensus       281 a~~~i~l~~kesdnnvklIvldrl~~l~~--~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lk  358 (948)
T KOG1058|consen  281 ASTYIDLLVKESDNNVKLIVLDRLSELKA--LHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLK  358 (948)
T ss_pred             HHHHHHHHHhccCcchhhhhHHHHHHHhh--hhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHH
Confidence            1112222 222333444444444444431  1222344444456677888999999988876555554433322212111


Q ss_pred             HHHHHH---hcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhh
Q 006898          400 PAIVEL---AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHI  476 (626)
Q Consensus       400 ~~l~~~---~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~i  476 (626)
                      ..+.+-   -.+++...|...++.+...+-.+.  .....++|.++..+.|.+..--......+...++.+..  ....+
T Consensus       359 ke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp--~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~--Lr~~i  434 (948)
T KOG1058|consen  359 KEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP--EVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPN--LRASI  434 (948)
T ss_pred             HHHHhccccccccchHHHHHHHHHHHHHhhcCh--HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCch--HHHHH
Confidence            222221   134567789999999888775543  34567999999999999987666666666666666543  34445


Q ss_pred             HHHHHhhhcC-CChHHHHHHHHHHHHhcc
Q 006898          477 TPQVLEMINN-PHYLYRMTILRAISLLAP  504 (626)
Q Consensus       477 l~~l~~~l~~-~~~~vR~~a~~~l~~i~~  504 (626)
                      +..+.+.+.. ....+-.++++.+|.-++
T Consensus       435 i~~l~~~~~~irS~ki~rgalwi~GeYce  463 (948)
T KOG1058|consen  435 IEKLLETFPQIRSSKICRGALWILGEYCE  463 (948)
T ss_pred             HHHHHHhhhhhcccccchhHHHHHHHHHh
Confidence            5555554322 445555666666665544

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=98.94  E-value=4e-05  Score=80.03  Aligned_cols=167  Identities=19%  Similarity=0.215  Sum_probs=120.9

Q ss_pred             hcCccHHHHHHHHhhHHHHHHhhChHhhhhhhccccc-cccCCchHHHHHHHHHHhccccccCCcchhhcchHHHhhhhc
Q 006898           18 LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLS-ENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCT   96 (626)
Q Consensus        18 l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~-~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~   96 (626)
                      +.|.+...|..|++.+-.. ...|.+  ...+.|-+. .+...|.|+++.+-.-+..+++.-  +...-..++.+.+=++
T Consensus        28 l~s~n~~~kidAmK~iIa~-M~~G~d--mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~--P~~~lLavNti~kDl~  102 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQ-MSLGED--MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLK--PELALLAVNTIQKDLQ  102 (757)
T ss_pred             ccccChHHHHHHHHHHHHH-HhcCCC--hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHhhcc
Confidence            6677777888888766654 344544  344444443 355778888888877776666632  2222233345566668


Q ss_pred             CcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHH-HHHHHHHhcCCC
Q 006898           97 VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTE-LRSIYTQLCQDD  175 (626)
Q Consensus        97 ~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~-l~~~l~~l~~d~  175 (626)
                      |+++.+|-.|++.++.+    +...+.+.+++-+.++.+|+++.||..|+-++..++..-...+.+. ....+..++.|+
T Consensus       103 d~N~~iR~~AlR~ls~l----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~  178 (757)
T COG5096         103 DPNEEIRGFALRTLSLL----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADS  178 (757)
T ss_pred             CCCHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCC
Confidence            89999999999888765    4456677788889999999999999999999999987666555555 677777888999


Q ss_pred             CHHHHHHHHHhHHHHHHh
Q 006898          176 MPMVRRSAASNLGKFAAT  193 (626)
Q Consensus       176 ~~~vR~~a~~~l~~l~~~  193 (626)
                      +|.|-.+|..++..+-..
T Consensus       179 dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         179 DPIVIANALASLAEIDPE  196 (757)
T ss_pred             CchHHHHHHHHHHHhchh
Confidence            999999888888777554

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=98.90  E-value=9.8e-06  Score=84.43  Aligned_cols=143  Identities=15%  Similarity=0.086  Sum_probs=112.8

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhh
Q 006898          161 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA  240 (626)
Q Consensus       161 ~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~  240 (626)
                      ...+.+-+.+.....+.++|+-.-..+..+++..+...  -..++.+.+-++|+++.+|..|++.++.+    +...+.+
T Consensus        53 mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~--lLavNti~kDl~d~N~~iR~~AlR~ls~l----~~~el~~  126 (757)
T COG5096          53 MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELA--LLAVNTIQKDLQDPNEEIRGFALRTLSLL----RVKELLG  126 (757)
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHhhccCCCHHHHHHHHHHHHhc----ChHHHHH
Confidence            45566666666667889999999999999888765322  23577888889999999999999999764    3446788


Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccc-hHHHHHHhcCCChHHHHHHHHHhHHHHHHh
Q 006898          241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMD-LVPAYVRLLRDNEAEVRIAAAGKVTKFCRI  310 (626)
Q Consensus       241 ~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~-l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~  310 (626)
                      .+++.++++++|+++.||+.|+-++..+-+. +++...+. ....+..++.|++|.|..+|+.++..+...
T Consensus       127 ~~~~~ik~~l~d~~ayVRk~Aalav~kly~l-d~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         127 NIIDPIKKLLTDPHAYVRKTAALAVAKLYRL-DKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             HHHHHHHHHccCCcHHHHHHHHHHHHHHHhc-CHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            8999999999999999999999999988754 22333343 667777888999999999999999887664

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.84  E-value=0.00028  Score=74.29  Aligned_cols=438  Identities=14%  Similarity=0.066  Sum_probs=239.9

Q ss_pred             cCccHHHHHHHHhhHHHHHHhhChHhhhhhhcccccccc-CC-chHHHHHHHHHHhccccc-c------CCc-----chh
Q 006898           19 KNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN-DD-DDEVLLAMAEELGVFIPY-V------GGV-----EHA   84 (626)
Q Consensus        19 ~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~-~~-~~~vr~~~~~~l~~~~~~-~------~~~-----~~~   84 (626)
                      -+.|++.|..|-+-|.++-+.-      ..+.-.|.-+. |. +-.||.+++--+.+.+.+ =      |.+     +-.
T Consensus        14 ~d~d~~~R~~AE~~L~q~~K~p------gFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~dk   87 (1010)
T KOG1991|consen   14 IDSDAKERKAAEQQLNQLEKQP------GFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEEDK   87 (1010)
T ss_pred             cCCChHHHHHHHHHHHHhhcCC------cHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChHHH
Confidence            3667999999999988873322      22222222222 33 335798888877765431 0      101     111


Q ss_pred             hcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCC----CCh--
Q 006898           85 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPS----APD--  158 (626)
Q Consensus        85 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~----~~~--  158 (626)
                      ..+-..+...+......+|-.-..++..|...=-| ..++.+++.+..++++.+...-..+.-++..++..    ..+  
T Consensus        88 ~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p-~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR  166 (1010)
T KOG1991|consen   88 AVIRENILETIVQVPELIRVQLTACLNTIIKADYP-EQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEER  166 (1010)
T ss_pred             HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCc-ccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhcccccc
Confidence            22222222222333666888888888777665444 34567889999999888766666777776665432    111  


Q ss_pred             ----H----HHHHHHHHHHHhcCCCCH---HHHHHHHHhHHHHHHhhCc-c----chhhhHHHHHHHhhcC---------
Q 006898          159 ----I----LKTELRSIYTQLCQDDMP---MVRRSAASNLGKFAATVEP-A----HLKTDIMSIFEDLTQD---------  213 (626)
Q Consensus       159 ----~----~~~~l~~~l~~l~~d~~~---~vR~~a~~~l~~l~~~~~~-~----~~~~~ll~~l~~l~~d---------  213 (626)
                          .    ..+.++..+..++.+++.   ...+..++.+..++..--| +    ......+..+...++-         
T Consensus       167 ~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~  246 (1010)
T KOG1991|consen  167 QPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSL  246 (1010)
T ss_pred             ccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccC
Confidence                1    224444555556666554   3455555555555443222 1    2222334444444432         


Q ss_pred             --------CchhHHHHHHHHHHHhhcccCchh----------------hhhhhHHHHHHhc---CCC---CHHHHHHHHH
Q 006898          214 --------DQDSVRLLAVEGCAALGKLLEPQD----------------CVAHILPVIVNFS---QDK---SWRVRYMVAN  263 (626)
Q Consensus       214 --------~~~~vr~~a~~~l~~l~~~~~~~~----------------~~~~i~~~l~~~~---~d~---~~~vR~~a~~  263 (626)
                              +-|.+++=|+..+.++.+..+...                +...++..+.+.+   ...   +++|-..+..
T Consensus       247 d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~  326 (1010)
T KOG1991|consen  247 DPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLN  326 (1010)
T ss_pred             ChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence                    123466778999999888776521                1111222221111   111   2233333333


Q ss_pred             HHHHHHHHhCCCccccchHHHHHHhc----------C---------CChHHHH-------------HHHHHhHHHHHHhh
Q 006898          264 QLYELCEAVGPEPTRMDLVPAYVRLL----------R---------DNEAEVR-------------IAAAGKVTKFCRIL  311 (626)
Q Consensus       264 ~l~~l~~~~~~~~~~~~l~~~l~~~l----------~---------d~~~~vr-------------~~a~~~l~~l~~~~  311 (626)
                      .+....   ....+...+-|.+..++          +         |+...+|             .+|...+..++..-
T Consensus       327 fl~~~V---s~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR  403 (1010)
T KOG1991|consen  327 FLEQCV---SHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKR  403 (1010)
T ss_pred             HHHHhc---cHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhc
Confidence            332221   11111122223222211          2         2223343             45666666666666


Q ss_pred             ChHHHHHhhHHHHHHhcc--------CCCHHHHHHHHHHHHhhhhhhcHH-----HHHHhHHHHHHHhhcCCCHHHHHHH
Q 006898          312 NPELAIQHILPCVKELSS--------DSSQHVRSALASVIMGMAPLLGKD-----ATIEQLLPIFLSLLKDEFPDVRLNI  378 (626)
Q Consensus       312 ~~~~~~~~l~~~l~~l~~--------d~~~~vr~~~~~~l~~l~~~~~~~-----~~~~~l~~~l~~~l~d~~~~vr~~a  378 (626)
                      |++.+ +.+++.+.+.++        ..+++-+..+...++.++..+.+.     ....-++++++..++++.--.|..|
T Consensus       404 ~ke~l-~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrara  482 (1010)
T KOG1991|consen  404 GKETL-PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARA  482 (1010)
T ss_pred             chhhh-hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHH
Confidence            66554 555666555443        345677788999999998766432     2223467788888899999999999


Q ss_pred             HHhhHHHH-hhhchhhHHhhHHHHHHHHhc-CCChHHHHHHHHHHHHHHHhhCh--hhHHHHHHHHHHH---HhcCCchH
Q 006898          379 ISKLDQVN-QVIGIDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQ---WLQDKVYS  451 (626)
Q Consensus       379 ~~~L~~~~-~~~~~~~~~~~i~~~l~~~~~-~~~~~~r~~~~~~l~~l~~~~~~--~~~~~~l~p~l~~---~l~d~~~~  451 (626)
                      +..++.++ ..+........++....+.+. |.+-.+|..+.-++..+......  ..+..++-|++..   +.++-+.+
T Consensus       483 c~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End  562 (1010)
T KOG1991|consen  483 CWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVEND  562 (1010)
T ss_pred             HHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchh
Confidence            99999998 445555545667777777776 78889999999999998765542  2344444444444   33333322


Q ss_pred             HHHHHHHHHHHHHHHhChH
Q 006898          452 IRDAAANNLKRLAEEFGPE  470 (626)
Q Consensus       452 VR~~a~~~l~~l~~~~~~~  470 (626)
                      .   -..++..++..++.+
T Consensus       563 ~---Lt~vme~iV~~fseE  578 (1010)
T KOG1991|consen  563 D---LTNVMEKIVCKFSEE  578 (1010)
T ss_pred             H---HHHHHHHHHHHHHHh
Confidence            2   233445555555543

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=98.82  E-value=1.7e-05  Score=80.37  Aligned_cols=199  Identities=16%  Similarity=0.155  Sum_probs=144.2

Q ss_pred             HHHHHHHhh-cCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHh-cCCChHHHHHHHHHHHHHHHhh--ChhhHH
Q 006898          359 LLPIFLSLL-KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQL--GVGFFD  434 (626)
Q Consensus       359 l~~~l~~~l-~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~r~~~~~~l~~l~~~~--~~~~~~  434 (626)
                      ++..+.... +..++..|..+.+.++.+.+.+..+...+.++..+.... .......|..+++.+..+.+++  ......
T Consensus       190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~  269 (415)
T PF12460_consen  190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA  269 (415)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH
Confidence            555555543 455699999999999999888755544455555555544 4556677788888887777765  112223


Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh---------------HHHhhhhHHHHHhhhcCCChHHHHHHHHHH
Q 006898          435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---------------EWAMQHITPQVLEMINNPHYLYRMTILRAI  499 (626)
Q Consensus       435 ~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~---------------~~~~~~il~~l~~~l~~~~~~vR~~a~~~l  499 (626)
                      ..+...+..++.|  +.+...++++++.+....+.               ..+...++|.+.+.++..+...|...+.++
T Consensus       270 ~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~AL  347 (415)
T PF12460_consen  270 TELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTAL  347 (415)
T ss_pred             HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHH
Confidence            4567778888887  77889999999988765211               123467788888888887777999999999


Q ss_pred             HHhccccChHHh---hhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhcc--chhhhcccchHH
Q 006898          500 SLLAPVMGSEIT---CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ--SVSTFSVSPFSF  559 (626)
Q Consensus       500 ~~i~~~~~~~~~---~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~--~~~~~~i~~~l~  559 (626)
                      ..+.++.+.+.+   .+.++|.+++.+.-+++++|..+..+|..+.....+  ..+.+.++|.|.
T Consensus       348 s~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL  412 (415)
T PF12460_consen  348 SHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLL  412 (415)
T ss_pred             HHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence            999999987654   567999999999999999999999999998876532  133345555444

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=98.79  E-value=0.00037  Score=72.56  Aligned_cols=561  Identities=13%  Similarity=0.062  Sum_probs=305.7

Q ss_pred             cHHHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhcccccc-cc--CCchHHHHHHHHHHhccccccCCcc----
Q 006898           10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NN--DDDDEVLLAMAEELGVFIPYVGGVE----   82 (626)
Q Consensus        10 ~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~--~~~~~vr~~~~~~l~~~~~~~~~~~----   82 (626)
                      .|..+++...|.|+..|..|-..+.....      +. .+-..|.+ ..  +..-..|+.+.-.|.+++..-..+.    
T Consensus         5 ~ii~~L~~~ls~d~~vr~~AE~~l~qle~------~~-~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~f   77 (1005)
T KOG2274|consen    5 AIIELLSGSLSADQNVRSQAETQLKQLEL------TE-GFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAF   77 (1005)
T ss_pred             HHHHHHHhhcCCChhHHHHHHHHHhcccc------ch-HHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhc
Confidence            36678888999999999999988887622      11 25555555 22  2344667777777777655332211    


Q ss_pred             ---------hhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhc
Q 006898           83 ---------HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAY  153 (626)
Q Consensus        83 ---------~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~  153 (626)
                               ....+-..+.+++-+++..+|.++..++..|+..--|+ -+++++|.+..++.+.+...-..|.+++..+.
T Consensus        78 r~~~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd-~WpElv~~i~~~l~~~n~n~i~~am~vL~el~  156 (1005)
T KOG2274|consen   78 RYPLIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPD-EWPELVPFILKLLSSGNENSIHGAMRVLAELS  156 (1005)
T ss_pred             cCCCcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCch-hhHHHHHHHHHHHhccchhhhhhHHHHHHHHH
Confidence                     12233345555666889999999999999998865554 36778999999888877777778888988887


Q ss_pred             CCCChHHHHH----HHHH---HHHhcCCCCHHHHHHHH--HhHHHHHHhhCc---------cchhhhHHHHHHHhhc---
Q 006898          154 PSAPDILKTE----LRSI---YTQLCQDDMPMVRRSAA--SNLGKFAATVEP---------AHLKTDIMSIFEDLTQ---  212 (626)
Q Consensus       154 ~~~~~~~~~~----l~~~---l~~l~~d~~~~vR~~a~--~~l~~l~~~~~~---------~~~~~~ll~~l~~l~~---  212 (626)
                      .....+....    .++.   +.......+...|-.++  ..+........+         ..+...+++.+...+.   
T Consensus       157 ~ev~~ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h~l  236 (1005)
T KOG2274|consen  157 DEVDVEEMFFVGPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEHPL  236 (1005)
T ss_pred             HHHHHHHHhcccccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            7664321111    1111   12223333444444444  222222221111         1222334444444332   


Q ss_pred             ---CC-chhHHHHHHHHHHHhhcccCc--hhhhhhhHH------------HHHHhc----------CCCCHH---HHHHH
Q 006898          213 ---DD-QDSVRLLAVEGCAALGKLLEP--QDCVAHILP------------VIVNFS----------QDKSWR---VRYMV  261 (626)
Q Consensus       213 ---d~-~~~vr~~a~~~l~~l~~~~~~--~~~~~~i~~------------~l~~~~----------~d~~~~---vR~~a  261 (626)
                         +. ++..|...++++..+.+.++.  ..+....++            ++..-.          .|.++.   +-...
T Consensus       237 ~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~l~  316 (1005)
T KOG2274|consen  237 QRNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVETLV  316 (1005)
T ss_pred             cccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChHHhh
Confidence               22 346777778888877776654  111111111            111110          111111   11111


Q ss_pred             HHH---HHHHHH------HhCCCccccchHHHHHHh------------------cCCCh--HHHHHHHHHhHHHHHHhhC
Q 006898          262 ANQ---LYELCE------AVGPEPTRMDLVPAYVRL------------------LRDNE--AEVRIAAAGKVTKFCRILN  312 (626)
Q Consensus       262 ~~~---l~~l~~------~~~~~~~~~~l~~~l~~~------------------l~d~~--~~vr~~a~~~l~~l~~~~~  312 (626)
                      .+.   +..+..      .+.+.  ..++++.+...                  ..|++  ..+|..+...+-.+...++
T Consensus       317 i~i~eF~s~i~t~~~~~~ti~~~--l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~~~~~~~~rd~~~~v~~~f~  394 (1005)
T KOG2274|consen  317 IQIVEFLSTIVTNRFLSKTIKKN--LPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDGYTARISVRDLLLEVITTFG  394 (1005)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCCchhhhhHHHHHHHHHHhcc
Confidence            111   111111      11110  11112221111                  12222  2455555555555555555


Q ss_pred             hHHH---HHhhHHHHH-----HhccCCC-HHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhc-CCCHHHHHHHHHhh
Q 006898          313 PELA---IQHILPCVK-----ELSSDSS-QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-DEFPDVRLNIISKL  382 (626)
Q Consensus       313 ~~~~---~~~l~~~l~-----~l~~d~~-~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~L  382 (626)
                      .+..   .+..-..+.     ...++++ |....+...+.......-..+.....+...+...+. ...|..-..+..++
T Consensus       395 ~~~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~~~~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i  474 (1005)
T KOG2274|consen  395 NEGINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRIDDANDDKLIELTIMIDNGLVYQESPFLLLRAFLTI  474 (1005)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccCcchHHHHHHHHHHHHhhcccccCHHHHHHHHHHH
Confidence            4321   111111111     1223333 455555444433333111112222233334444443 44566666888888


Q ss_pred             HHHHhh--hchhhHHhhHHHHHHH-HhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 006898          383 DQVNQV--IGIDLLSQSLLPAIVE-LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANN  459 (626)
Q Consensus       383 ~~~~~~--~~~~~~~~~i~~~l~~-~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~  459 (626)
                      +.+...  ..+..+ +.++..... +..+....+|..+++++...++.---..+.+.++..+.++..+...+|-...+++
T Consensus       475 ~~fs~~~~~~~~~~-~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~  553 (1005)
T KOG2274|consen  475 SKFSSSTVINPQLL-QHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEA  553 (1005)
T ss_pred             HHHHhhhccchhHH-HHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcccccHHHHHHHHHH
Confidence            887766  333332 333333333 3456778899999888877663222223446677888888888888998888999


Q ss_pred             HHHHHHHhChHH---HhhhhHHHHHhhh--cCCChHHHHHHHHHHHHhccccC-hHHhhhcHHHHHhhhCCCCC----ch
Q 006898          460 LKRLAEEFGPEW---AMQHITPQVLEMI--NNPHYLYRMTILRAISLLAPVMG-SEITCSRLLPVVINASKDRV----PN  529 (626)
Q Consensus       460 l~~l~~~~~~~~---~~~~il~~l~~~l--~~~~~~vR~~a~~~l~~i~~~~~-~~~~~~~~l~~l~~~l~d~~----~~  529 (626)
                      |...+.. .+++   ..+.+.|....++  ...++.+-..+-.++..+++... .....+..+|.+...+.-+.    +.
T Consensus       554 Ls~vv~~-dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPslisil~~~~~~~~~~  632 (1005)
T KOG2274|consen  554 LSSVVKL-DPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQERLIPSLISVLQLNADKAPAG  632 (1005)
T ss_pred             HHHHhcc-ChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCcccccCch
Confidence            8888865 3322   3467788877754  23455666666666666655222 12356889999999887666    56


Q ss_pred             HHHHHHHHHHHHHhhhccc---hhhhcccchHHhhhccCCCcccccccccCchhHHHHHHHHHHH
Q 006898          530 IKFNVAKVLQSLIPIVDQS---VSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCH  591 (626)
Q Consensus       530 vR~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~  591 (626)
                      .-..++..|..+.+.-+++   ....+.+|.+..-.+...|.+.-.         ++.++|..+-
T Consensus       633 l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ---------~~~EcLra~I  688 (1005)
T KOG2274|consen  633 LCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQ---------NATECLRALI  688 (1005)
T ss_pred             hhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHH---------hHHHHHHHHH
Confidence            7778888888888776553   344567777772335555666666         7888887764

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=98.76  E-value=1.3e-05  Score=76.97  Aligned_cols=292  Identities=14%  Similarity=0.068  Sum_probs=176.3

Q ss_pred             hhHHHHHHHHHHHhhcccCc-hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc----cccch--HHHHHHh
Q 006898          216 DSVRLLAVEGCAALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----TRMDL--VPAYVRL  288 (626)
Q Consensus       216 ~~vr~~a~~~l~~l~~~~~~-~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~l--~~~l~~~  288 (626)
                      ..+|..+++.+..++.+++- ..+.-.+.-.+.....+..+.+...++.++..+....+.+.    ....+  -|....+
T Consensus       269 s~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~  348 (728)
T KOG4535|consen  269 SPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMM  348 (728)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHH
Confidence            35888999999999888875 33444455566667788999999999999998887766332    11111  1122222


Q ss_pred             cC--------C-ChHHHHHHHHHhHHHHHHhh--ChHHHHHhhHHHHHHhccC-CCHHHHHHHHHHHHhhhhhhcH---H
Q 006898          289 LR--------D-NEAEVRIAAAGKVTKFCRIL--NPELAIQHILPCVKELSSD-SSQHVRSALASVIMGMAPLLGK---D  353 (626)
Q Consensus       289 l~--------d-~~~~vr~~a~~~l~~l~~~~--~~~~~~~~l~~~l~~l~~d-~~~~vr~~~~~~l~~l~~~~~~---~  353 (626)
                      +.        | ..+....++..++..++..-  +-+.-.+...+.+.....| ++.-+|.++++.++.+.-.-+-   .
T Consensus       349 l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~  428 (728)
T KOG4535|consen  349 LNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDV  428 (728)
T ss_pred             ccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhH
Confidence            21        1 11333444444444443311  1111113345555555554 4456788888877765433221   1


Q ss_pred             HHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhch-----h----hHHhhHHHHHHHHhc---CCChHHHHHHHHHH
Q 006898          354 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-----D----LLSQSLLPAIVELAE---DRHWRVRLAIIEYI  421 (626)
Q Consensus       354 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~-----~----~~~~~i~~~l~~~~~---~~~~~~r~~~~~~l  421 (626)
                      .+.......+...+.|..-.+|..++.+++.+...+-.     +    .+....+..+.....   -.+.++|..+++++
T Consensus       429 ~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraL  508 (728)
T KOG4535|consen  429 IFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRAL  508 (728)
T ss_pred             HHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Confidence            23344556667778888889999999999998765421     1    122233334333322   34689999999999


Q ss_pred             HHHHHhhChh--hHHHHHHHH-HHH----HhcCCchHHHHHHHHHHHHHHHHhC----hHHHhhhhHHHHHhhhc-CCCh
Q 006898          422 PLLASQLGVG--FFDDKLGAL-CMQ----WLQDKVYSIRDAAANNLKRLAEEFG----PEWAMQHITPQVLEMIN-NPHY  489 (626)
Q Consensus       422 ~~l~~~~~~~--~~~~~l~p~-l~~----~l~d~~~~VR~~a~~~l~~l~~~~~----~~~~~~~il~~l~~~l~-~~~~  489 (626)
                      +.+.+.+.+-  .....++.. ..+    .....+..||..++.+++++++.-.    .......++|.+..++. ..|.
T Consensus       509 gnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NF  588 (728)
T KOG4535|consen  509 GNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNF  588 (728)
T ss_pred             hhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccc
Confidence            9988766421  001111111 111    1233467799999999999987521    11234678888888765 4799


Q ss_pred             HHHHHHHHHHHHhccccC
Q 006898          490 LYRMTILRAISLLAPVMG  507 (626)
Q Consensus       490 ~vR~~a~~~l~~i~~~~~  507 (626)
                      ++|..|+.++..-.+..+
T Consensus       589 KVRi~AA~aL~vp~~re~  606 (728)
T KOG4535|consen  589 KVRIRAAAALSVPGKREQ  606 (728)
T ss_pred             eEeehhhhhhcCCCCccc
Confidence            999999999987766444

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=98.73  E-value=2.1e-06  Score=90.98  Aligned_cols=195  Identities=13%  Similarity=0.153  Sum_probs=160.7

Q ss_pred             cHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhc---hhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHh
Q 006898          351 GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ  427 (626)
Q Consensus       351 ~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~---~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~  427 (626)
                      .+....+.+-+.+...+.++++.-|..|++.+...++.-+   ...+...+...+.-...|.|..+-..++..+..+++.
T Consensus       246 ~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~  325 (815)
T KOG1820|consen  246 PRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKK  325 (815)
T ss_pred             chhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Confidence            4566777888888899999999999999999888776544   3333344444555556788999999999999999998


Q ss_pred             hChhh--HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccc
Q 006898          428 LGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPV  505 (626)
Q Consensus       428 ~~~~~--~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~  505 (626)
                      ++..+  +...+.|.++..+.|....+|.++..++..++....    ...+.+.+...+++.+++.|..+...+....+.
T Consensus       326 lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~----l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~  401 (815)
T KOG1820|consen  326 LRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP----LSKMSEAILEALKGKNPQIKGECLLLLDRKLRK  401 (815)
T ss_pred             cchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhh
Confidence            87654  346688999999999999999999999988887433    456888999999999999999999999988877


Q ss_pred             cCh----HHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccch
Q 006898          506 MGS----EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV  549 (626)
Q Consensus       506 ~~~----~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~  549 (626)
                      .++    ......+.|.+....+|.+.+||.+|..+++.+...+|...
T Consensus       402 ~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~  449 (815)
T KOG1820|consen  402 LGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEV  449 (815)
T ss_pred             cCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHH
Confidence            662    23567899999999999999999999999999999998753

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=98.68  E-value=1.4e-05  Score=84.84  Aligned_cols=188  Identities=14%  Similarity=0.104  Sum_probs=154.9

Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC--hH-HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHH--
Q 006898          279 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN--PE-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD--  353 (626)
Q Consensus       279 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~-~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~--  353 (626)
                      ..+-+.+...+.+.+|.-|..|+..+...++.-+  .. .+...+...+.....|.|..|-..++..+..++..++..  
T Consensus       252 ~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~  331 (815)
T KOG1820|consen  252 SKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFR  331 (815)
T ss_pred             hhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhH
Confidence            4566777778889999999999999988887655  11 223445556666778999999999999999999887754  


Q ss_pred             HHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChh--
Q 006898          354 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--  431 (626)
Q Consensus       354 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~--  431 (626)
                      .+.....|.++..++|..+.+|..+..++..++...+-    ..+.+.+...+++.+++.|.....++.......++.  
T Consensus       332 ~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l----~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~  407 (815)
T KOG1820|consen  332 KYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL----SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV  407 (815)
T ss_pred             HHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH----HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence            34556789999999999999999999999988875443    467888889999999999999999999988877732  


Q ss_pred             --hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChH
Q 006898          432 --FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE  470 (626)
Q Consensus       432 --~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~  470 (626)
                        .....+.|.+....+|.+.+||.+|..+++.+...+|.+
T Consensus       408 ~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~  448 (815)
T KOG1820|consen  408 EKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEE  448 (815)
T ss_pred             chhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHH
Confidence              234678999999999999999999999999999999876

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.65  E-value=0.00079  Score=68.22  Aligned_cols=437  Identities=12%  Similarity=0.097  Sum_probs=216.7

Q ss_pred             HHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhccccccccCCchHHHHHHHHHHhccccccCCcchhhcchHHH
Q 006898           12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPL   91 (626)
Q Consensus        12 ~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l   91 (626)
                      +.+.+-|.|-|+..-.-|++.+++++..--.+....++ |-+.-..+..+-||+.++-++-.+.+..++-.....=..-+
T Consensus       114 n~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI-~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~ri  192 (938)
T KOG1077|consen  114 NSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDI-PKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRI  192 (938)
T ss_pred             HHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhh-HHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHH
Confidence            44556678888888899999999885432112222222 33333455667899999988876655322211111122233


Q ss_pred             hhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHh---c----C--C--ccc-----hhHHHhhHhHHhcCC
Q 006898           92 ETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLA---A----G--E--WFT-----ARVSACGLFHIAYPS  155 (626)
Q Consensus        92 ~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~---~----~--~--~~~-----~r~~a~~~l~~~~~~  155 (626)
                      -.++.|.+-.|-.++..-+..+++..+++. ...+.+.+.++.   .    +  +  .+.     -....++++...-.-
T Consensus       193 v~LL~D~~~gv~ta~~sLi~~lvk~~p~~y-k~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~  271 (938)
T KOG1077|consen  193 VHLLDDQHMGVVTAATSLIEALVKKNPESY-KTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTP  271 (938)
T ss_pred             HHHhCccccceeeehHHHHHHHHHcCCHHH-hhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCC
Confidence            445566666677777777788888777632 222233332221   1    1  0  000     112233333332111


Q ss_pred             CChHHHH---HHHHHHHHhcCCC--C-----HHHHHHHHHhHHHHHHhhCc-cchhhhHHHHHHHhhcCCchhHHHHHHH
Q 006898          156 APDILKT---ELRSIYTQLCQDD--M-----PMVRRSAASNLGKFAATVEP-AHLKTDIMSIFEDLTQDDQDSVRLLAVE  224 (626)
Q Consensus       156 ~~~~~~~---~l~~~l~~l~~d~--~-----~~vR~~a~~~l~~l~~~~~~-~~~~~~ll~~l~~l~~d~~~~vr~~a~~  224 (626)
                      -+...+.   ++++.++...+++  +     ..++.+.+...-.++.+... +.........+-+++++.+..+|-.|++
T Consensus       272 ~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLE  351 (938)
T KOG1077|consen  272 EDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALE  351 (938)
T ss_pred             CCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHH
Confidence            1112333   3333333333321  1     12333333334444444433 3344556667777888888899999999


Q ss_pred             HHHHhhcccCc-hhhhhhhHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHH
Q 006898          225 GCAALGKLLEP-QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAG  302 (626)
Q Consensus       225 ~l~~l~~~~~~-~~~~~~i~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~  302 (626)
                      .+..++..-.. +....+ ...+...++ +++..+|+.++..|..++..-.    .+.++.-+++.+...++.+|+..+-
T Consensus       352 sm~~L~ss~~s~davK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~~N----ak~IV~elLqYL~tAd~sireeivl  426 (938)
T KOG1077|consen  352 SMCKLASSEFSIDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDVSN----AKQIVAELLQYLETADYSIREEIVL  426 (938)
T ss_pred             HHHHHHhccchHHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHHhchhh----HHHHHHHHHHHHhhcchHHHHHHHH
Confidence            88888766333 222223 333444444 7888899999999888876432    3456666666676678888888877


Q ss_pred             hHHHHHHhhChH--HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCC--CHHHHHHH
Q 006898          303 KVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE--FPDVRLNI  378 (626)
Q Consensus       303 ~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~--~~~vr~~a  378 (626)
                      -.+.+++....+  .+...++..+.-..+--+..|-.-+++.+      ...+.........++..|..+  .+..-+.+
T Consensus       427 KvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiV------vNnedlq~yaak~~fe~Lq~~a~hE~mVKvg  500 (938)
T KOG1077|consen  427 KVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIV------VNNEDLQGYAAKRLFEYLQKPACHENMVKVG  500 (938)
T ss_pred             HHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeE------ecchhhhHHHHHHHHHHHhhhHHHHHHHHhh
Confidence            777777754433  33333333322111111112111111100      011111111122222222211  11222222


Q ss_pred             HHhhHHHHhhhchhh--HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHH
Q 006898          379 ISKLDQVNQVIGIDL--LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAA  456 (626)
Q Consensus       379 ~~~L~~~~~~~~~~~--~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a  456 (626)
                      .--||+++..+..+.  -....+..+.+-+..-+...|...+.....+...++  ...+.+...+....+-.+.++++.|
T Consensus       501 gyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr~lLLtTyiKl~nl~P--Ei~~~v~~vFq~~~n~~D~ElQqRa  578 (938)
T KOG1077|consen  501 GYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRALLLTTYIKLINLFP--EIKSNVQKVFQLYSNLIDVELQQRA  578 (938)
T ss_pred             hhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhCh--hhhHHHHHHHHhhcccCCHHHHHHH
Confidence            233444444332211  011222333333333445566666666666555442  2334455555555555778888888


Q ss_pred             HHHHHHH
Q 006898          457 ANNLKRL  463 (626)
Q Consensus       457 ~~~l~~l  463 (626)
                      ++-+.-.
T Consensus       579 ~EYLql~  585 (938)
T KOG1077|consen  579 VEYLQLS  585 (938)
T ss_pred             HHHHHHH
Confidence            8776543

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.62  E-value=0.0004  Score=70.83  Aligned_cols=323  Identities=12%  Similarity=0.138  Sum_probs=198.0

Q ss_pred             HHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHH
Q 006898          205 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPA  284 (626)
Q Consensus       205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~  284 (626)
                      +.+.+-++++++.+|-..++.+..+    .+.+..+.++|.+...+++.+..||+.|+-++..+..... .. ..+.-..
T Consensus       102 na~RkDLQHPNEyiRG~TLRFLckL----kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~-~L-~pDapeL  175 (948)
T KOG1058|consen  102 NAYRKDLQHPNEYIRGSTLRFLCKL----KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE-HL-IPDAPEL  175 (948)
T ss_pred             HHHhhhccCchHhhcchhhhhhhhc----CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh-hh-cCChHHH
Confidence            4456668889999998888777543    3445677889999999999999999999999888876521 11 1121122


Q ss_pred             HHH-hcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHH
Q 006898          285 YVR-LLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIF  363 (626)
Q Consensus       285 l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l  363 (626)
                      +.. +..+.+|..++.|.-.|...    +++...+.+...+.+ ..+-+......+.+.+...+..-  .......+..+
T Consensus       176 i~~fL~~e~DpsCkRNAFi~L~~~----D~ErAl~Yl~~~idq-i~~~~~~LqlViVE~Irkv~~~~--p~~~~~~i~~i  248 (948)
T KOG1058|consen  176 IESFLLTEQDPSCKRNAFLMLFTT----DPERALNYLLSNIDQ-IPSFNDSLQLVIVELIRKVCLAN--PAEKARYIRCI  248 (948)
T ss_pred             HHHHHHhccCchhHHHHHHHHHhc----CHHHHHHHHHhhHhh-ccCccHHHHHHHHHHHHHHHhcC--HHHhhHHHHHH
Confidence            222 33577788888887655443    233222222222211 12233455555556555555421  22234567778


Q ss_pred             HHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHh-cCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHH
Q 006898          364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM  442 (626)
Q Consensus       364 ~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~  442 (626)
                      ..+|...++.|+-.|+.++-.+...   +.........+.+++ +.++-.++...+.-+..+.. .... ..+.+.--++
T Consensus       249 ~~lL~stssaV~fEaa~tlv~lS~~---p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~-~~~~-il~~l~mDvL  323 (948)
T KOG1058|consen  249 YNLLSSTSSAVIFEAAGTLVTLSND---PTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKA-LHEK-ILQGLIMDVL  323 (948)
T ss_pred             HHHHhcCCchhhhhhcceEEEccCC---HHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhh-hhHH-HHHHHHHHHH
Confidence            8888888899988887776655332   111122233344443 33445566666666666651 2222 2334444567


Q ss_pred             HHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhh---hcCCChHHHHHHHHHHHHhccccChHHhhhcHHHHH
Q 006898          443 QWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM---INNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVV  519 (626)
Q Consensus       443 ~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~---l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l  519 (626)
                      +.+..++-+||..+....-.++..-+-+....-+-..+.+.   -.+.+...|+..++++..++-.++.  +...+.|.+
T Consensus       324 rvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~--~aatvV~~l  401 (948)
T KOG1058|consen  324 RVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE--VAATVVSLL  401 (948)
T ss_pred             HHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH--HHHHHHHHH
Confidence            88899999999999988777766544332222222222221   1345677899999999988765542  567889999


Q ss_pred             hhhCCCCCchHHHHHHHHHHHHHhhhcc
Q 006898          520 INASKDRVPNIKFNVAKVLQSLIPIVDQ  547 (626)
Q Consensus       520 ~~~l~d~~~~vR~~a~~~l~~i~~~~~~  547 (626)
                      +..+.|.++.--...+.-+.+.++.+++
T Consensus       402 l~fisD~N~~aas~vl~FvrE~iek~p~  429 (948)
T KOG1058|consen  402 LDFISDSNEAAASDVLMFVREAIEKFPN  429 (948)
T ss_pred             HHHhccCCHHHHHHHHHHHHHHHHhCch
Confidence            9999999988777777777777776553

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=98.61  E-value=0.00015  Score=73.53  Aligned_cols=286  Identities=14%  Similarity=0.127  Sum_probs=153.8

Q ss_pred             chHHHHHHHHHHHHHHhhcChhh-------HHH-hHHHHHHHHhcCC-----c--cchhHHHhhHhHHhcCCCChHHHHH
Q 006898           99 ETCVRDKAVESLCRIGSQMRESD-------LVD-WYIPLVKRLAAGE-----W--FTARVSACGLFHIAYPSAPDILKTE  163 (626)
Q Consensus        99 ~~~vR~~a~~~l~~i~~~~~~~~-------~~~-~l~~~l~~l~~~~-----~--~~~r~~a~~~l~~~~~~~~~~~~~~  163 (626)
                      +.......+.++..+.+......       ..+ .++|.+.+.....     .  +.+-..+..++..+..+++.+.+++
T Consensus        56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~  135 (415)
T PF12460_consen   56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE  135 (415)
T ss_pred             ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            45566677777777665442211       112 2566665544221     1  2333456677788888888876666


Q ss_pred             HHHHHHHhcC----------CCC--HHHHHHHHHhHHHHHHhhCccch---hhhHHHHHHHhhc-CCchhHHHHHHHHHH
Q 006898          164 LRSIYTQLCQ----------DDM--PMVRRSAASNLGKFAATVEPAHL---KTDIMSIFEDLTQ-DDQDSVRLLAVEGCA  227 (626)
Q Consensus       164 l~~~l~~l~~----------d~~--~~vR~~a~~~l~~l~~~~~~~~~---~~~ll~~l~~l~~-d~~~~vr~~a~~~l~  227 (626)
                      +...+..+.-          +.+  +.........+..+...++++..   ...++..+..+.. .+++..|..+++.+.
T Consensus       136 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la  215 (415)
T PF12460_consen  136 ILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLA  215 (415)
T ss_pred             HHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            6665555432          111  11222333334455555554332   2335555555543 345889999999999


Q ss_pred             HhhcccCchhhhhhhHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHh--CCCccccchHHHHHHhcCCChHHHHHHHHHhH
Q 006898          228 ALGKLLEPQDCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAV--GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV  304 (626)
Q Consensus       228 ~l~~~~~~~~~~~~i~~~l~~~~-~d~~~~vR~~a~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l  304 (626)
                      .+...++.+...+.++..+.... .......|..+.+.+.-+.+.+  ........++..+..++.|  +++...+++++
T Consensus       216 ~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f  293 (415)
T PF12460_consen  216 SLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAF  293 (415)
T ss_pred             HHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHH
Confidence            99988776555555555554444 4455566777777776666643  2222234677888888887  67888888888


Q ss_pred             HHHHHhhC---------------hHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHH---HHhHHHHHHHh
Q 006898          305 TKFCRILN---------------PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT---IEQLLPIFLSL  366 (626)
Q Consensus       305 ~~l~~~~~---------------~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~  366 (626)
                      +.+....+               .+.+...++|.+.+..++.+...|.....++..+.+..+.+..   .+.++|.+.+.
T Consensus       294 ~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqs  373 (415)
T PF12460_consen  294 GILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQS  373 (415)
T ss_pred             hhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence            88765311               1122233444444443333333444444444444444333222   22344444444


Q ss_pred             hcCCCHHHHHHHHHhhHHHH
Q 006898          367 LKDEFPDVRLNIISKLDQVN  386 (626)
Q Consensus       367 l~d~~~~vr~~a~~~L~~~~  386 (626)
                      |.-++.+++.+++.++..+.
T Consensus       374 L~~~~~~v~~s~L~tL~~~l  393 (415)
T PF12460_consen  374 LSLPDADVLLSSLETLKMIL  393 (415)
T ss_pred             hCCCCHHHHHHHHHHHHHHH
Confidence            44444444444444444443

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=98.59  E-value=0.00071  Score=70.81  Aligned_cols=477  Identities=14%  Similarity=0.091  Sum_probs=242.1

Q ss_pred             chHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHH
Q 006898           87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRS  166 (626)
Q Consensus        87 l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~  166 (626)
                      +..++..-+-|+.+.||..|+..+..+.+...... ...++..+..-..|+-+.++.++...+..-..-++.+.+..   
T Consensus       473 ~~~~~~~rClDkaaavR~~al~s~tk~l~l~~~~~-~~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt---  548 (1529)
T KOG0413|consen  473 LYNIVYMRCLDKAAAVRLHALNSLTKILQLQSHRE-AFSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTT---  548 (1529)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccc-hHHHHHHhcCCccccchhHHHhchhhhhcccCcccccccch---
Confidence            44445555568889999999888887776554321 12233333333344446666666555554433333221110   


Q ss_pred             HHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhc-CCchhHHHHHHHHHHHhhcccCchhhhhhhHHH
Q 006898          167 IYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ-DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPV  245 (626)
Q Consensus       167 ~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~  245 (626)
                         ..+.+....+...    =+.+... +..-+...++..+..-++ |+...|+..++..+.....++..+...+..+-+
T Consensus       549 ---~~l~~~~~ii~d~----~~~~~~~-ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~i  620 (1529)
T KOG0413|consen  549 ---DLLLDEQQIIQDF----KLKLMNK-GETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSI  620 (1529)
T ss_pred             ---hhcCcchhhhhhc----chhhhhc-cccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHH
Confidence               1111211111111    1111111 111223345555555554 777889999999999888888876666677888


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc-cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHh-h--ChH--H----
Q 006898          246 IVNFSQDKSWRVRYMVANQLYELCEAVGPEP-TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI-L--NPE--L----  315 (626)
Q Consensus       246 l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~-~--~~~--~----  315 (626)
                      +..+|.|+-..||..++..|+.+...-+.-. .....+-.+..+++|.+..+.+.|...+.++..- +  +..  .    
T Consensus       621 Lq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l~p~~~~~~dlaW~LL~  700 (1529)
T KOG0413|consen  621 LQMLCRDRMVSVRKTGADSLTELMLRDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIMKVLTPLLENSSDLAWTLLD  700 (1529)
T ss_pred             HHHHhcCcchHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhcccCCchHHHHHH
Confidence            9999999999999999999988765422211 1123445566677888888888888766555432 1  000  0    


Q ss_pred             ----------HHH--------------hhHHHHHHh----ccCCCHHHHHHHHHHHHhh--hh-hh-----cH-HH---H
Q 006898          316 ----------AIQ--------------HILPCVKEL----SSDSSQHVRSALASVIMGM--AP-LL-----GK-DA---T  355 (626)
Q Consensus       316 ----------~~~--------------~l~~~l~~l----~~d~~~~vr~~~~~~l~~l--~~-~~-----~~-~~---~  355 (626)
                                ++.              ..+....+-    ..++.|.+-..++-....+  +- .+     .. +.   +
T Consensus       701 ~i~~~~~~s~yl~~~~h~w~~~~k~~~t~~d~~~~hsG~E~~~~aWm~~s~~~~q~~~~d~S~~~~s~~~~s~~~N~~~~  780 (1529)
T KOG0413|consen  701 TIESVTNHSQYLMSTLHDWVREKKVKRTVMDSMKQHSGSEKLDGAWMVFSQLCVQFEQVDFSIETFSRVDLSRESNLVQY  780 (1529)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhcccCcccCcchHHHHHHHHhcccccceeeecccccccchhhhHHHH
Confidence                      000              000000000    0123454433322211110  00 00     00 11   1


Q ss_pred             HHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHh---------------------h------------HHHHH
Q 006898          356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQ---------------------S------------LLPAI  402 (626)
Q Consensus       356 ~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~---------------------~------------i~~~l  402 (626)
                      ..+++..+.++-+|-..+.+.....++..+++.-+..+..+                     .            +.+..
T Consensus       781 L~hI~~~i~~i~~~l~s~~vd~~~~a~K~~Ck~~~~~~s~e~~~~~~d~i~~~sl~~~e~~~~~iE~l~~~c~d~i~~~~  860 (1529)
T KOG0413|consen  781 LIHIIENIKKIDDDLKSDLVDTLQGAFKDYCKHPSSRSSYECLGKLMDGIGDRSLHGKEFSDFGIETLLIKCFDTIVQSF  860 (1529)
T ss_pred             HHHHHHHHHhhhhcccHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHHhhcccCchHHHhhHHHhccceehhHH
Confidence            22222222223334444555555555554444333111100                     0            00111


Q ss_pred             HHHhcCCChHH----HHHHHHHHHHHH--H--hhChhhHHHHHHHHHHHHh----cCC----------------------
Q 006898          403 VELAEDRHWRV----RLAIIEYIPLLA--S--QLGVGFFDDKLGALCMQWL----QDK----------------------  448 (626)
Q Consensus       403 ~~~~~~~~~~~----r~~~~~~l~~l~--~--~~~~~~~~~~l~p~l~~~l----~d~----------------------  448 (626)
                      ..+-+...|..    ...++.+.-.++  .  .+-+..-....++.+....    .|.                      
T Consensus       861 ~~~~~~~~~~~~s~~~~~~l~~~y~v~~~~~~ql~P~ar~~K~~~lLv~s~~~gssDa~htp~tq~se~p~sqp~~~v~g  940 (1529)
T KOG0413|consen  861 EMFKDKDEWKRNSESQERLLCTAYNVAFSYSPQLVPHARLGKTLSLLVNSTENGSSDAPHTPPTQLSEVPSSQPSSKVEG  940 (1529)
T ss_pred             hhhhhhHHHhhcchhHHHHHHHHhhccccccceeccchhccceeeeeeeeeccCCCCCCCCCccchhhCcccCCCccccc
Confidence            00000001110    000111111111  0  0000000011222221111    121                      


Q ss_pred             ---chHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhc-CCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCC
Q 006898          449 ---VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASK  524 (626)
Q Consensus       449 ---~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~-~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~  524 (626)
                         .+-||..+.-+++++|-..+.  ...+.+|.+.+-+. .....+|.+.+-+++.++....  ...+..+|.+...+.
T Consensus       941 ~~~~~~vra~~vvTlakmcLah~~--LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT--am~d~YiP~I~~~L~ 1016 (1529)
T KOG0413|consen  941 AMFSDKVRAVGVVTLAKMCLAHDR--LAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT--AMTDRYIPMIAASLC 1016 (1529)
T ss_pred             cccchHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH--HHHHHhhHHHHHHhc
Confidence               235788888999999876553  45678899887554 4567788888888887765332  245778999999999


Q ss_pred             CCCchHHHHHHHHHHHHHhhhccchhhhcccchHHhhhccCCCcccccccccCchhHHHHHHHHHH
Q 006898          525 DRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYC  590 (626)
Q Consensus       525 d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~  590 (626)
                      |+++-||..+.-.|.++.+.- --.|...++=-+. ..+-|.+++||.         .|...++.+
T Consensus      1017 Dp~~iVRrqt~ilL~rLLq~~-~vKw~G~Lf~Rf~-l~l~D~~edIr~---------~a~f~~~~v 1071 (1529)
T KOG0413|consen 1017 DPSVIVRRQTIILLARLLQFG-IVKWNGELFIRFM-LALLDANEDIRN---------DAKFYISEV 1071 (1529)
T ss_pred             CchHHHHHHHHHHHHHHHhhh-hhhcchhhHHHHH-HHHcccCHHHHH---------HHHHHHHHH
Confidence            999999999999999988652 2223333333333 345688999998         666655554

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=98.58  E-value=0.00028  Score=73.65  Aligned_cols=430  Identities=15%  Similarity=0.165  Sum_probs=218.3

Q ss_pred             HHhHHHHHHHHhc-CCccchhHHHhhHhHHhcCCCChH-HHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc-cch
Q 006898          123 VDWYIPLVKRLAA-GEWFTARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-AHL  199 (626)
Q Consensus       123 ~~~l~~~l~~l~~-~~~~~~r~~a~~~l~~~~~~~~~~-~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-~~~  199 (626)
                      ...++..+.+-.+ |+-..+|..+++.+.....+++.. ..+..+.+|..+|.|+-..||+.++.+|+.+...-+. -..
T Consensus       574 e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~  653 (1529)
T KOG0413|consen  574 EKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRDPRLFSL  653 (1529)
T ss_pred             HHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchhhhh
Confidence            3445555554444 777889999999999888888765 4456688899999999999999999999998764332 123


Q ss_pred             hhhHHHHHHHhhcCCchhHHHHHHHHHHHhh-cccCc-hhhhhhhHHHHHHhcCC--------CCHHH-HHHHHHHHHHH
Q 006898          200 KTDIMSIFEDLTQDDQDSVRLLAVEGCAALG-KLLEP-QDCVAHILPVIVNFSQD--------KSWRV-RYMVANQLYEL  268 (626)
Q Consensus       200 ~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~-~~~~~-~~~~~~i~~~l~~~~~d--------~~~~v-R~~a~~~l~~l  268 (626)
                      ....+..+..++.|.+..|...|...+..+. .++.. ....-.++..+....+.        ..|.- ...-...+...
T Consensus       654 ~~~wl~~li~~~~d~es~v~e~a~~~i~k~l~p~~~~~~dlaW~LL~~i~~~~~~s~yl~~~~h~w~~~~k~~~t~~d~~  733 (1529)
T KOG0413|consen  654 SSKWLHTLISMLNDTESDVTEHARKLIMKVLTPLLENSSDLAWTLLDTIESVTNHSQYLMSTLHDWVREKKVKRTVMDSM  733 (1529)
T ss_pred             hHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhh
Confidence            3456667777788888888877777554432 22211 11111112211111110        00100 00001112222


Q ss_pred             HHHhCCCcccc--chHHH-HHH---------hcC-------CChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhcc
Q 006898          269 CEAVGPEPTRM--DLVPA-YVR---------LLR-------DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS  329 (626)
Q Consensus       269 ~~~~~~~~~~~--~l~~~-l~~---------~l~-------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~  329 (626)
                      ..+-|.+....  .+... +.+         ...       ++....-......++.+.+.+....+ +.+...+..++.
T Consensus       734 ~~hsG~E~~~~aWm~~s~~~~q~~~~d~S~~~~s~~~~s~~~N~~~~L~hI~~~i~~i~~~l~s~~v-d~~~~a~K~~Ck  812 (1529)
T KOG0413|consen  734 KQHSGSEKLDGAWMVFSQLCVQFEQVDFSIETFSRVDLSRESNLVQYLIHIIENIKKIDDDLKSDLV-DTLQGAFKDYCK  812 (1529)
T ss_pred             hcccCcccCcchHHHHHHHHhcccccceeeecccccccchhhhHHHHHHHHHHHHHhhhhcccHHHH-HHHHHHHHHHHc
Confidence            22222221100  00000 000         001       11111222223333333333333322 444455555444


Q ss_pred             CCC----HHHHHHHHHHHHhhhhhhc--HHHHHHhH-------HHHHHHhhcCCC-----HHHHHHHHH-----hhHHHH
Q 006898          330 DSS----QHVRSALASVIMGMAPLLG--KDATIEQL-------LPIFLSLLKDEF-----PDVRLNIIS-----KLDQVN  386 (626)
Q Consensus       330 d~~----~~vr~~~~~~l~~l~~~~~--~~~~~~~l-------~~~l~~~l~d~~-----~~vr~~a~~-----~L~~~~  386 (626)
                      .+.    ..+-..+..+++..+..-.  .++..+.+       +.....+++|.+     ..-...++.     +++.+.
T Consensus       813 ~~~~~~s~e~~~~~~d~i~~~sl~~~e~~~~~iE~l~~~c~d~i~~~~~~~~~~~~~~~~s~~~~~~l~~~y~v~~~~~~  892 (1529)
T KOG0413|consen  813 HPSSRSSYECLGKLMDGIGDRSLHGKEFSDFGIETLLIKCFDTIVQSFEMFKDKDEWKRNSESQERLLCTAYNVAFSYSP  892 (1529)
T ss_pred             CCccccHHHHHHHHHHHHHHHHhhcccCchHHHhhHHHhccceehhHHhhhhhhHHHhhcchhHHHHHHHHhhccccccc
Confidence            433    2333334444444432111  01111111       111122222211     111111111     112221


Q ss_pred             hhhchhhHHhhHHHHHHHHhc----C-------------------------CChHHHHHHHHHHHHHHHhhChhhHHHHH
Q 006898          387 QVIGIDLLSQSLLPAIVELAE----D-------------------------RHWRVRLAIIEYIPLLASQLGVGFFDDKL  437 (626)
Q Consensus       387 ~~~~~~~~~~~i~~~l~~~~~----~-------------------------~~~~~r~~~~~~l~~l~~~~~~~~~~~~l  437 (626)
                      +..+.... .+.++.|.+...    |                         ....+|..+.-.++.++-  .........
T Consensus       893 ql~P~ar~-~K~~~lLv~s~~~gssDa~htp~tq~se~p~sqp~~~v~g~~~~~~vra~~vvTlakmcL--ah~~LaKr~  969 (1529)
T KOG0413|consen  893 QLVPHARL-GKTLSLLVNSTENGSSDAPHTPPTQLSEVPSSQPSSKVEGAMFSDKVRAVGVVTLAKMCL--AHDRLAKRL  969 (1529)
T ss_pred             eeccchhc-cceeeeeeeeeccCCCCCCCCCccchhhCcccCCCccccccccchHHHHHHHHHHHHHHh--hhhHHHHHH
Confidence            21111111 222222222110    0                         123356666666666553  333455678


Q ss_pred             HHHHHHHhc-CCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhhcHH
Q 006898          438 GALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLL  516 (626)
Q Consensus       438 ~p~l~~~l~-d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l  516 (626)
                      +|.+.+-|+ .....+|...+-+++.+|..+..  ..+..+|.+...+.||+.-+|..++-.+.++.+. +--.+...++
T Consensus       970 ~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa--m~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~-~~vKw~G~Lf 1046 (1529)
T KOG0413|consen  970 MPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA--MTDRYIPMIAASLCDPSVIVRRQTIILLARLLQF-GIVKWNGELF 1046 (1529)
T ss_pred             HHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH--HHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhh-hhhhcchhhH
Confidence            888877664 45678999999999999987642  3477899999999999999999999999988752 1001223333


Q ss_pred             HHHhhhCCCCCchHHHHHHHHHHHHHhhhccchhhhcccchHH
Q 006898          517 PVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSF  559 (626)
Q Consensus       517 ~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~  559 (626)
                      -.++..+-|.++++|..|--.++.+...-.+..+....+..+.
T Consensus      1047 ~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i~ 1089 (1529)
T KOG0413|consen 1047 IRFMLALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYII 1089 (1529)
T ss_pred             HHHHHHHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHHH
Confidence            3333345599999999999999998877555444444444443

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.57  E-value=4.1e-06  Score=84.99  Aligned_cols=238  Identities=17%  Similarity=0.237  Sum_probs=169.1

Q ss_pred             CCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhc-CC
Q 006898          331 SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-DR  409 (626)
Q Consensus       331 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~-~~  409 (626)
                      .++.-+....+.|..+...++.......++|.+...+.+..  ..-...-.+-.+.+......+...++|.|...++ ..
T Consensus       285 kdn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~~--~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~  362 (700)
T KOG2137|consen  285 KDNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNTK--MVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASD  362 (700)
T ss_pred             cCcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhcccc--ccccccchhhhhhhccchhhhhhhhhHHHHHHhccCC
Confidence            34455667777777777777777777788888877775431  0000111122233333444455678888888877 55


Q ss_pred             ChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhh-hcCCC
Q 006898          410 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM-INNPH  488 (626)
Q Consensus       410 ~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~-l~~~~  488 (626)
                      +.+.+...++-+..+.+...++.+.+.++|.+...++|.+..++..++..+..+.+.+.-...++.++|.+..+ +++.+
T Consensus       363 ~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~  442 (700)
T KOG2137|consen  363 PKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTN  442 (700)
T ss_pred             cccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccc
Confidence            67788888888888888888999999999999999999999999999999999998888777888999999885 56678


Q ss_pred             hHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhh--ccchhhhcccchHHhhhccCC
Q 006898          489 YLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV--DQSVSTFSVSPFSFMLYLNVN  566 (626)
Q Consensus       489 ~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~--~~~~~~~~i~~~l~~~l~~d~  566 (626)
                      ..+|.+++-|++.+++.++.....+.++|.+.. .+-+++.+......+...+.-..  |.....+.++|.+. .+...+
T Consensus       443 ~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~-~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli-~ls~~~  520 (700)
T KOG2137|consen  443 LYVKVNVLPCLAGLIQRLDKAAVLDELLPILKC-IKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLI-PLSVAP  520 (700)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhh-hhhhcc
Confidence            889999999999999877776667777766554 44556777666666665544332  23555667888777 665444


Q ss_pred             Cccccc
Q 006898          567 NFNVGF  572 (626)
Q Consensus       567 d~~vr~  572 (626)
                      .-.+..
T Consensus       521 ~L~~~Q  526 (700)
T KOG2137|consen  521 SLNGEQ  526 (700)
T ss_pred             cccHHH
Confidence            444433

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.53  E-value=0.00032  Score=72.31  Aligned_cols=470  Identities=13%  Similarity=0.114  Sum_probs=245.5

Q ss_pred             hhhhccccccccCCchHHHHHHHHHHhccccccCCcchhhcchHHHhhhhcCc-chHHHHHHHHHHHHHHh-hcChhhHH
Q 006898           46 RKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVE-ETCVRDKAVESLCRIGS-QMRESDLV  123 (626)
Q Consensus        46 ~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~-~~~vR~~a~~~l~~i~~-~~~~~~~~  123 (626)
                      .+.+..++.+..+++|.+|+.+.++|..+.      ......+.++.-+.++. ++.+|.+|+-.++.-++ +|.+..-.
T Consensus         4 le~l~~~l~qTl~pdps~rk~aEr~L~~~e------~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~   77 (960)
T KOG1992|consen    4 LETLANYLLQTLSPDPSVRKPAERALRSLE------GQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDS   77 (960)
T ss_pred             HHHHHHHHHhcCCCCCccCchHHHHHHHhc------cCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCC
Confidence            355666777777888999998888888652      23444444444444433 67788888888877666 55432100


Q ss_pred             HhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhH
Q 006898          124 DWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDI  203 (626)
Q Consensus       124 ~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l  203 (626)
                                                   .....++.++.+...+..+.-+....++....++++.+++.-- +..|+.+
T Consensus        78 -----------------------------~~~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DF-P~kWptL  127 (960)
T KOG1992|consen   78 -----------------------------PIKIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDF-PDKWPTL  127 (960)
T ss_pred             -----------------------------ccccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcccc-chhhHHH
Confidence                                         0112234455666666676666678899888888888876433 3567889


Q ss_pred             HHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHH
Q 006898          204 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVP  283 (626)
Q Consensus       204 l~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~  283 (626)
                      +|.+..-++..|-.+-.+.+..-..+-+.+..+...+.+..-++..+               +.++..+      ..++.
T Consensus       128 l~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~EIK~vL---------------d~f~~Pl------t~Lf~  186 (960)
T KOG1992|consen  128 LPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLEIKLVL---------------DRFAEPL------TDLFR  186 (960)
T ss_pred             HHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHH---------------HhhHhHH------HHHHH
Confidence            99988888877665555555555545554443222222221111111               1111000      00000


Q ss_pred             HHHHhc--CCChHHHHHHHHHhHHHHHHhh---C----h---HHHHHhhHHHHHHhcc--------C-CC----HHHHHH
Q 006898          284 AYVRLL--RDNEAEVRIAAAGKVTKFCRIL---N----P---ELAIQHILPCVKELSS--------D-SS----QHVRSA  338 (626)
Q Consensus       284 ~l~~~l--~d~~~~vr~~a~~~l~~l~~~~---~----~---~~~~~~l~~~l~~l~~--------d-~~----~~vr~~  338 (626)
                      ....+.  .+++...-......+--+++.+   .    +   +...+..++.+.+++.        | .+    ..+|..
T Consensus       187 ~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~  266 (960)
T KOG1992|consen  187 KTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQ  266 (960)
T ss_pred             HHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHH
Confidence            000011  0111110000001111111110   0    0   0112233343333332        1 11    267778


Q ss_pred             HHHHHHhhhhhhcHHH--HHHhHHHHHHHhhcCC----CH-HHHHHHHHhhHHHHhhhchhh--HHhhHHHHHHHHhcCC
Q 006898          339 LASVIMGMAPLLGKDA--TIEQLLPIFLSLLKDE----FP-DVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDR  409 (626)
Q Consensus       339 ~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~----~~-~vr~~a~~~L~~~~~~~~~~~--~~~~i~~~l~~~~~~~  409 (626)
                      +|+.+.-.++...+++  +.++++...-.++.+.    .. .....|+..|..+++.-....  -.+.++..+.+...=+
T Consensus       267 ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~Vvlp  346 (960)
T KOG1992|consen  267 ICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLP  346 (960)
T ss_pred             HHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhccc
Confidence            8887776665544332  2334443334444432    22 233445555555543221110  0133444444443334


Q ss_pred             ChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHhChHHHhhhh---HHHHH-hhh
Q 006898          410 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKV-YSIRDAAANNLKRLAEEFGPEWAMQHI---TPQVL-EMI  484 (626)
Q Consensus       410 ~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~-~~VR~~a~~~l~~l~~~~~~~~~~~~i---l~~l~-~~l  484 (626)
                      +...|..-.+            .|.+.-+..+-+-+.-.+ ..-|++|+..++.++..+... ...-+   +..++ +..
T Consensus       347 N~~lR~eDeE------------lFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~-vt~v~~~~v~~~l~~y~  413 (960)
T KOG1992|consen  347 NLILREEDEE------------LFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQ-VTGVFSSEVQRLLDQYS  413 (960)
T ss_pred             ccccchhhHH------------HhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHhc
Confidence            4433433222            222223334444443333 345778899999999988433 22222   22222 233


Q ss_pred             cCC--ChHHHHHHHHHHHHhccccC---------------hHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhcc
Q 006898          485 NNP--HYLYRMTILRAISLLAPVMG---------------SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  547 (626)
Q Consensus       485 ~~~--~~~vR~~a~~~l~~i~~~~~---------------~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~  547 (626)
                      .+|  ||.-+..++..+..++-.-+               .+++...++|.|..--....|-+|..+++-+.-+-..++.
T Consensus       414 ~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~  493 (960)
T KOG1992|consen  414 KNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGK  493 (960)
T ss_pred             cCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCCh
Confidence            344  89988888888887764311               1356778888887755566677777666655544444443


Q ss_pred             chhhhcccchHHhhhccCCCcccccccccCchhHHHHHHHHHHHHHhhc
Q 006898          548 SVSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCHRWWRK  596 (626)
Q Consensus       548 ~~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~~~~~~  596 (626)
                       .+...++|.+. +++..+..-|-.         ||+.+++++-.+.++
T Consensus       494 -~~lm~~~p~li-~~L~a~s~vvhs---------YAA~aiEkil~vre~  531 (960)
T KOG1992|consen  494 -EHLMALLPRLI-RFLEAESRVVHS---------YAAIAIEKLLTVREN  531 (960)
T ss_pred             -HHHHHHHHHHH-HhccCcchHHHH---------HHHHHHHhccccccC
Confidence             44467888888 888888888888         999999998665555

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=98.53  E-value=1.8e-05  Score=70.27  Aligned_cols=237  Identities=19%  Similarity=0.150  Sum_probs=149.1

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCh--HHHHHHHHHhHHHHHHhhChHHHHHhh
Q 006898          243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNE--AEVRIAAAGKVTKFCRILNPELAIQHI  320 (626)
Q Consensus       243 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~l  320 (626)
                      +..+.+...|.+...+...+.++|+..        ..+-+|.+...+.|++  |-||..|.++|+.+..        +..
T Consensus        38 i~~i~ka~~d~s~llkhe~ay~LgQ~~--------~~~Av~~l~~vl~desq~pmvRhEAaealga~~~--------~~~  101 (289)
T KOG0567|consen   38 IKAITKAFIDDSALLKHELAYVLGQMQ--------DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--------PES  101 (289)
T ss_pred             HHHHHHhcccchhhhccchhhhhhhhc--------cchhhHHHHHHhcccccchHHHHHHHHHHHhhcc--------hhh
Confidence            555666666667777777777877765        3567888888887655  8899999999998873        556


Q ss_pred             HHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHH
Q 006898          321 LPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP  400 (626)
Q Consensus       321 ~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~  400 (626)
                      .+.+.+..+|+...||..+..++..+--.-+-+.. ....|.. +  .|+.+.   ...+.                 +.
T Consensus       102 ~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~-~~~~p~~-S--vdPa~p---~~~ss-----------------v~  157 (289)
T KOG0567|consen  102 LEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKI-ANSSPYI-S--VDPAPP---ANLSS-----------------VH  157 (289)
T ss_pred             HHHHHHHhcCCccccchHHHHHHHHHHHhhccccc-cccCccc-c--CCCCCc---ccccc-----------------HH
Confidence            77788877888888988766665554311100000 0000000 0  233222   00111                 11


Q ss_pred             HHHHHhcCCC--hHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHH
Q 006898          401 AIVELAEDRH--WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITP  478 (626)
Q Consensus       401 ~l~~~~~~~~--~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~  478 (626)
                      .+...+.|.+  -..|..++-.+-.+    |.+    .-+-.+...+.++..-.|..++.++|++-.        ..-+|
T Consensus       158 ~lr~~lld~t~~l~~Ry~amF~LRn~----g~E----eaI~al~~~l~~~SalfrhEvAfVfGQl~s--------~~ai~  221 (289)
T KOG0567|consen  158 ELRAELLDETKPLFERYRAMFYLRNI----GTE----EAINALIDGLADDSALFRHEVAFVFGQLQS--------PAAIP  221 (289)
T ss_pred             HHHHHHHhcchhHHHHHhhhhHhhcc----CcH----HHHHHHHHhcccchHHHHHHHHHHHhhccc--------hhhhH
Confidence            1111111111  12233333333222    211    122345566778888899999999988853        33577


Q ss_pred             HHHhhhcC--CChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHh
Q 006898          479 QVLEMINN--PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP  543 (626)
Q Consensus       479 ~l~~~l~~--~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~  543 (626)
                      .+.+.+.|  .++-||..+++++|.++.        +..++.|.+.++|+++-||..+.-+|.-.--
T Consensus       222 ~L~k~L~d~~E~pMVRhEaAeALGaIa~--------e~~~~vL~e~~~D~~~vv~esc~valdm~ey  280 (289)
T KOG0567|consen  222 SLIKVLLDETEHPMVRHEAAEALGAIAD--------EDCVEVLKEYLGDEERVVRESCEVALDMLEY  280 (289)
T ss_pred             HHHHHHHhhhcchHHHHHHHHHHHhhcC--------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence            88887665  578899999999998875        5778899999999999999999888876543

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=98.52  E-value=0.0002  Score=75.48  Aligned_cols=365  Identities=15%  Similarity=0.145  Sum_probs=217.1

Q ss_pred             HhcCCCCHHHHHHHHHhHHHHHHhhCcc--chhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc--hhhhhhhHHH
Q 006898          170 QLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPV  245 (626)
Q Consensus       170 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~i~~~  245 (626)
                      .++...+.-+| .+...|.++++....+  -....+++.+.++++.++.++...++..|..++-....  .-....+++.
T Consensus       257 ~l~~kQeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~k  335 (708)
T PF05804_consen  257 TLIRKQEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEK  335 (708)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHH
Confidence            33334333344 4556677777654321  23345788888889888888998888888887744332  2234568889


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHHhC--CCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChH--HHHHhhH
Q 006898          246 IVNFSQDKSWRVRYMVANQLYELCEAVG--PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHIL  321 (626)
Q Consensus       246 l~~~~~d~~~~vR~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~  321 (626)
                      +.+++..++..++..+...|..++..-.  .......++|.+..+++|+  ..+..++..|..++..-...  ...+..+
T Consensus       336 L~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcI  413 (708)
T PF05804_consen  336 LLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCI  413 (708)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchH
Confidence            9999998888999999998888764221  1122346889999999875  45555666666655421111  1123456


Q ss_pred             HHHHHh-ccCCCHHHHHHHHHHHHhhhhhhcH-HH-HHHhHHHHHHH-hhcCCCHHHHHHHHHhhHHHHhhhchhh-HHh
Q 006898          322 PCVKEL-SSDSSQHVRSALASVIMGMAPLLGK-DA-TIEQLLPIFLS-LLKDEFPDVRLNIISKLDQVNQVIGIDL-LSQ  396 (626)
Q Consensus       322 ~~l~~l-~~d~~~~vr~~~~~~l~~l~~~~~~-~~-~~~~l~~~l~~-~l~d~~~~vr~~a~~~L~~~~~~~~~~~-~~~  396 (626)
                      |.+.++ ...++.++...++..+..++..-.. +. ....-++.++. .++..++-    .++.+.++..+-|+.. ...
T Consensus       414 p~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k~~f~  489 (708)
T PF05804_consen  414 PQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLKELFV  489 (708)
T ss_pred             HHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHHHHHH
Confidence            777664 4456666666555555555432211 11 11112233332 23333322    2233444444432211 111


Q ss_pred             hHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHhhCh----h-hHH-HHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHh
Q 006898          397 SLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGV----G-FFD-DKLGALCMQWLQDK--VYSIRDAAANNLKRLAEEF  467 (626)
Q Consensus       397 ~i~~~l~~~~~~~-~~~~r~~~~~~l~~l~~~~~~----~-~~~-~~l~p~l~~~l~d~--~~~VR~~a~~~l~~l~~~~  467 (626)
                      ..+..+.+.+..+ ++   ...+++++.+++.--+    . .+. ..++|.+...+...  ..++...++..+|+++..-
T Consensus       490 ~~i~~L~~~v~~~~~e---e~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~  566 (708)
T PF05804_consen  490 DFIGDLAKIVSSGDSE---EFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDP  566 (708)
T ss_pred             HHHHHHHHHhhcCCcH---HHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCH
Confidence            2333333444333 33   4555666666553211    1 122 25788888887543  3468888888888887432


Q ss_pred             ChH--HHhhhhHHHHHhhhcC--CChHHHHHHHHHHHHhccccChHH-h--hhcHHHHHhhhCCCCCchHHHHHHHHHHH
Q 006898          468 GPE--WAMQHITPQVLEMINN--PHYLYRMTILRAISLLAPVMGSEI-T--CSRLLPVVINASKDRVPNIKFNVAKVLQS  540 (626)
Q Consensus       468 ~~~--~~~~~il~~l~~~l~~--~~~~vR~~a~~~l~~i~~~~~~~~-~--~~~~l~~l~~~l~d~~~~vR~~a~~~l~~  540 (626)
                      ...  .....+++.+.++++.  .|...-...+.++.++..+-.... .  ...+...+..++.|+++.||..+-.+|.-
T Consensus       567 ~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldi  646 (708)
T PF05804_consen  567 ECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDI  646 (708)
T ss_pred             HHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            111  2246788999998765  357778888889998887633222 1  24677899999999999999999999988


Q ss_pred             HHhh
Q 006898          541 LIPI  544 (626)
Q Consensus       541 i~~~  544 (626)
                      +...
T Consensus       647 i~e~  650 (708)
T PF05804_consen  647 IAEY  650 (708)
T ss_pred             HHHh
Confidence            7765

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=98.52  E-value=7.5e-07  Score=68.27  Aligned_cols=88  Identities=20%  Similarity=0.274  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHhChH--HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHH--hhhcHHHHHhhhCCCCCc
Q 006898          453 RDAAANNLKRLAEEFGPE--WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRVP  528 (626)
Q Consensus       453 R~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~--~~~~~l~~l~~~l~d~~~  528 (626)
                      |..+..+|+.++..++..  ...+.++|.+...+.|++++||..|++++.++++....+.  +.+.+++.|.++..|+++
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~   82 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDE   82 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence            556666666666665554  2346677777777777777777777777777776665443  356777777778888888


Q ss_pred             hHHHHHHHHHHHH
Q 006898          529 NIKFNVAKVLQSL  541 (626)
Q Consensus       529 ~vR~~a~~~l~~i  541 (626)
                      +||..| +.|.++
T Consensus        83 ~Vr~~a-~~Ld~l   94 (97)
T PF12755_consen   83 NVRSAA-ELLDRL   94 (97)
T ss_pred             hHHHHH-HHHHHH
Confidence            887665 444443

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=98.52  E-value=0.00088  Score=70.80  Aligned_cols=369  Identities=13%  Similarity=0.135  Sum_probs=217.4

Q ss_pred             HHHHHhhcCCchhHHHHHHHHHHHhhcccCch--hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC--CCccccc
Q 006898          205 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEPTRMD  280 (626)
Q Consensus       205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~--~~~~~~~  280 (626)
                      ..+..++...+.-.| .++..|.++++...-+  -....+++.+.++++..+..+...++..+..++..-.  .......
T Consensus       253 kk~~~l~~kQeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~g  331 (708)
T PF05804_consen  253 KKLQTLIRKQEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESG  331 (708)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence            344445555544455 5677788888765442  2345688888888888888888888888877763321  1122457


Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC--hHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhc-H-HHHH
Q 006898          281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN--PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG-K-DATI  356 (626)
Q Consensus       281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~-~-~~~~  356 (626)
                      +++.+..++..++.+++..++..|..++-.-.  ...+...++|.+..++.+++  .|..+...+..++..-. + -+..
T Consensus       332 iV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~  409 (708)
T PF05804_consen  332 IVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAY  409 (708)
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhh
Confidence            89999999998888999999998888765322  23445678899999998765  34555666666653211 1 1223


Q ss_pred             HhHHHHHHHhhc-CCCHHHHHHHHHhhHHHHhhhch-h-hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh--h
Q 006898          357 EQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGI-D-LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--G  431 (626)
Q Consensus       357 ~~l~~~l~~~l~-d~~~~vr~~a~~~L~~~~~~~~~-~-~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~--~  431 (626)
                      ...+|.+..++. .+++.+...++..+-+++..-.. + ......++.+.+......-   ...+..+-.++..-|+  .
T Consensus       410 TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~~k~  486 (708)
T PF05804_consen  410 TDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQHDGPLKE  486 (708)
T ss_pred             cchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcCchHHH
Confidence            356777777654 34555554444333333221100 0 0012234444443322111   1223344444443322  2


Q ss_pred             hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh--ChHH---H-hhhhHHHHHhhhcCC--ChHHHHHHHHHHHHhc
Q 006898          432 FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF--GPEW---A-MQHITPQVLEMINNP--HYLYRMTILRAISLLA  503 (626)
Q Consensus       432 ~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~--~~~~---~-~~~il~~l~~~l~~~--~~~vR~~a~~~l~~i~  503 (626)
                      .|.+++.|++-......+.   ...++|+|.+...-  +.+|   . ...++|.+.+.+..+  ..++...++..+|.++
T Consensus       487 ~f~~~i~~L~~~v~~~~~e---e~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla  563 (708)
T PF05804_consen  487 LFVDFIGDLAKIVSSGDSE---EFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLA  563 (708)
T ss_pred             HHHHHHHHHHHHhhcCCcH---HHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHH
Confidence            2344444433332222333   45566666665532  2222   2 247899999887653  4568888888999887


Q ss_pred             cccChH--HhhhcHHHHHhhhCCC--CCchHHHHHHHHHHHHHhhhccch---hhhcccchHHhhhccCCCccccccccc
Q 006898          504 PVMGSE--ITCSRLLPVVINASKD--RVPNIKFNVAKVLQSLIPIVDQSV---STFSVSPFSFMLYLNVNNFNVGFIFAA  576 (626)
Q Consensus       504 ~~~~~~--~~~~~~l~~l~~~l~d--~~~~vR~~a~~~l~~i~~~~~~~~---~~~~i~~~l~~~l~~d~d~~vr~~~~~  576 (626)
                      ..-...  .....+.+.|..+++.  .+.+.-...+.++.++..+-....   ....+..-|. .+..|.+.+||.    
T Consensus       564 ~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~yli-dL~~d~N~~ir~----  638 (708)
T PF05804_consen  564 SDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLI-DLMHDKNAEIRK----  638 (708)
T ss_pred             CCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHH-HHhcCCCHHHHH----
Confidence            532222  2345677777777643  346777788888888876632221   1234566666 788999999999    


Q ss_pred             CchhHHHHHHHHHHHH
Q 006898          577 FPLVLFSCLALNYCHR  592 (626)
Q Consensus       577 ~~~~~~a~~al~~~~~  592 (626)
                           .+..+|+-+..
T Consensus       639 -----~~d~~Ldii~e  649 (708)
T PF05804_consen  639 -----VCDNALDIIAE  649 (708)
T ss_pred             -----HHHHHHHHHHH
Confidence                 99999988753

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=98.48  E-value=8.8e-07  Score=67.89  Aligned_cols=88  Identities=26%  Similarity=0.351  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHhhcccCc--hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcc--ccchHHHHHHhcCCCh
Q 006898          218 VRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLRDNE  293 (626)
Q Consensus       218 vr~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~  293 (626)
                      .|..++-++.+++..++.  ..+.+.++|.+...++|.+++||..+++++..+++..+.+..  .+++++.+.+++.|.+
T Consensus         2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d   81 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD   81 (97)
T ss_pred             chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            366777777777766665  456677777778888888888888888888888777654432  2466777777778888


Q ss_pred             HHHHHHHHHhHHH
Q 006898          294 AEVRIAAAGKVTK  306 (626)
Q Consensus       294 ~~vr~~a~~~l~~  306 (626)
                      ++||.+| ..|..
T Consensus        82 ~~Vr~~a-~~Ld~   93 (97)
T PF12755_consen   82 ENVRSAA-ELLDR   93 (97)
T ss_pred             hhHHHHH-HHHHH
Confidence            8887766 44433

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.47  E-value=2e-05  Score=80.17  Aligned_cols=238  Identities=15%  Similarity=0.225  Sum_probs=179.3

Q ss_pred             ChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhc-CC
Q 006898          292 NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-DE  370 (626)
Q Consensus       292 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~  370 (626)
                      .++.-+..-.+.|.++...++...+.+.++|.+.+.+.+.  ..--...-.+..+++......+...++|.+...++ ..
T Consensus       285 kdn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~--~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~  362 (700)
T KOG2137|consen  285 KDNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNT--KMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASD  362 (700)
T ss_pred             cCcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhccc--cccccccchhhhhhhccchhhhhhhhhHHHHHHhccCC
Confidence            3456666777888888888888888888999887655332  11122223344455555666778888999988887 44


Q ss_pred             CHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHH-hcCCc
Q 006898          371 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW-LQDKV  449 (626)
Q Consensus       371 ~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~-l~d~~  449 (626)
                      ...++.-.++.+..+.+....+.+.+.++|.|...+++.+.+++..++..+..+++.++.....+.++|.+..+ +...+
T Consensus       363 ~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~  442 (700)
T KOG2137|consen  363 PKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTN  442 (700)
T ss_pred             cccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccc
Confidence            45677777888888889999999999999999999999999999999999999999999888889999998776 56778


Q ss_pred             hHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccc--cChHHhhhcHHHHHhhhCCCCC
Q 006898          450 YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPV--MGSEITCSRLLPVVINASKDRV  527 (626)
Q Consensus       450 ~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~--~~~~~~~~~~l~~l~~~l~d~~  527 (626)
                      ..|+..++.|++.+++.+......+.+ +.+.+..+.+++.+....+.+...++-.  .|.+...+.++|.+.-+...+.
T Consensus       443 ~~vkvn~L~c~~~l~q~lD~~~v~d~~-lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~  521 (700)
T KOG2137|consen  443 LYVKVNVLPCLAGLIQRLDKAAVLDEL-LPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS  521 (700)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence            899999999999999877654333444 4444556677788888888877766532  2346667889999888877666


Q ss_pred             chHHH
Q 006898          528 PNIKF  532 (626)
Q Consensus       528 ~~vR~  532 (626)
                      -++-+
T Consensus       522 L~~~Q  526 (700)
T KOG2137|consen  522 LNGEQ  526 (700)
T ss_pred             ccHHH
Confidence            55433

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=98.47  E-value=0.0032  Score=66.08  Aligned_cols=148  Identities=14%  Similarity=0.126  Sum_probs=112.3

Q ss_pred             hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHH---HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh--H
Q 006898          396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD---DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP--E  470 (626)
Q Consensus       396 ~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~---~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~--~  470 (626)
                      ..+.|.+.+.........|...+.+++.+....+.+...   +.++|.+++.+.=++..||..+..++..+....+.  .
T Consensus       866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t  945 (1030)
T KOG1967|consen  866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT  945 (1030)
T ss_pred             HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence            457787777776556667777888888887766655433   56888999998888888999999888888765443  2


Q ss_pred             HHhhhhHHHHHhhhcCCC---hHHHHHHHHHHHHhccccChH---HhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHh
Q 006898          471 WAMQHITPQVLEMINNPH---YLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP  543 (626)
Q Consensus       471 ~~~~~il~~l~~~l~~~~---~~vR~~a~~~l~~i~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~  543 (626)
                      .....++|.+..+-.|++   -.||..|++|++.+.+..+..   .+.+.++..+...+.|+..-||..|.++=.++..
T Consensus       946 ~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~ 1024 (1030)
T KOG1967|consen  946 EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWYM 1024 (1030)
T ss_pred             HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhhh
Confidence            345778888888777765   468999999999888866543   3667888888889999999999998887666543

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=98.46  E-value=2e-05  Score=72.74  Aligned_cols=180  Identities=14%  Similarity=0.095  Sum_probs=122.0

Q ss_pred             CCCHHHHHHHHHHHHhhhhhhc-HHHHHH-hHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhc
Q 006898          330 DSSQHVRSALASVIMGMAPLLG-KDATIE-QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE  407 (626)
Q Consensus       330 d~~~~vr~~~~~~l~~l~~~~~-~~~~~~-~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~  407 (626)
                      ..++.+++.+..+++..+..-. ++...+ ..++.+.+++.++++.+|..|+.++..+..........+..++.+.+...
T Consensus        24 t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~  103 (254)
T PF04826_consen   24 TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETV  103 (254)
T ss_pred             CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHh
Confidence            4567777777777777654322 222222 35778888899999999999999888876554433333455666655443


Q ss_pred             C--CChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh--ChHHHhhhhHHHHHhh
Q 006898          408 D--RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF--GPEWAMQHITPQVLEM  483 (626)
Q Consensus       408 ~--~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~--~~~~~~~~il~~l~~~  483 (626)
                      +  -+..++.+++..+..+.-...........+|.++.++...+..+|..+.++|..+...-  ..+....+.++.+..+
T Consensus       104 s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~L  183 (254)
T PF04826_consen  104 SSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSL  183 (254)
T ss_pred             cCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHH
Confidence            3  35688888888888875433222233345777888888889999999999998887642  2334456677788887


Q ss_pred             hcCC-ChHHHHHHHHHHHHhccccChH
Q 006898          484 INNP-HYLYRMTILRAISLLAPVMGSE  509 (626)
Q Consensus       484 l~~~-~~~vR~~a~~~l~~i~~~~~~~  509 (626)
                      ++.. +..+-..++..+.++.+.+.++
T Consensus       184 f~~~~~~~~l~~~l~~~~ni~~~~~~~  210 (254)
T PF04826_consen  184 FNSSESKENLLRVLTFFENINENIKKE  210 (254)
T ss_pred             HccCCccHHHHHHHHHHHHHHHhhCcc
Confidence            7765 6777888888888887655443

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.44  E-value=0.0047  Score=66.75  Aligned_cols=138  Identities=15%  Similarity=0.097  Sum_probs=106.4

Q ss_pred             hChhhHHHHHHHHHHHHh----cCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhc-CCChHHHHHHHHHHHHh
Q 006898          428 LGVGFFDDKLGALCMQWL----QDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN-NPHYLYRMTILRAISLL  502 (626)
Q Consensus       428 ~~~~~~~~~l~p~l~~~l----~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~-~~~~~vR~~a~~~l~~i  502 (626)
                      .|+......+.|++....    .-.++.++.+|.-+++.+...- .+ +...=+|.+...++ .|++.+|.+++-++|.+
T Consensus       911 ~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS-a~-fces~l~llftimeksp~p~IRsN~VvalgDl  988 (1251)
T KOG0414|consen  911 YGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCIS-AE-FCESHLPLLFTIMEKSPSPRIRSNLVVALGDL  988 (1251)
T ss_pred             cChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh-HH-HHHHHHHHHHHHHhcCCCceeeecchheccch
Confidence            355666678899988887    3346899999999999987542 22 45566888888665 89999999999999988


Q ss_pred             ccccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccchhhhcccchHHhhhccCCCccccc
Q 006898          503 APVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSFMLYLNVNNFNVGF  572 (626)
Q Consensus       503 ~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~l~~d~d~~vr~  572 (626)
                      +-.++.  +.+..-+.|...+.|.++.||.+|..++..++..  +-.-....++.+. .++.|++.+|+.
T Consensus       989 av~fpn--lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILn--dmiKVKGql~eMA-~cl~D~~~~Isd 1053 (1251)
T KOG0414|consen  989 AVRFPN--LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILN--DMIKVKGQLSEMA-LCLEDPNAEISD 1053 (1251)
T ss_pred             hhhccc--ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHh--hhhHhcccHHHHH-HHhcCCcHHHHH
Confidence            765543  3455667888899999999999999999988755  1122245677778 899999999999

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=98.44  E-value=0.0038  Score=65.44  Aligned_cols=232  Identities=15%  Similarity=0.116  Sum_probs=145.1

Q ss_pred             ChHHHHHHHHHhHHHHHHh--hChHHHHHhhHHH-HHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhc
Q 006898          292 NEAEVRIAAAGKVTKFCRI--LNPELAIQHILPC-VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK  368 (626)
Q Consensus       292 ~~~~vr~~a~~~l~~l~~~--~~~~~~~~~l~~~-l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~  368 (626)
                      +.|..-..+..+++.+++.  ..+... +.++.. +..+..|..+.+|..++.++...++.-.-..+.+.++..+.++..
T Consensus       462 e~P~Ll~Ra~~~i~~fs~~~~~~~~~~-~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas  540 (1005)
T KOG2274|consen  462 ESPFLLLRAFLTISKFSSSTVINPQLL-QHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLAS  540 (1005)
T ss_pred             cCHHHHHHHHHHHHHHHhhhccchhHH-HHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcc
Confidence            3455555677777777775  233332 333333 334556777888888888887776432223446677888888888


Q ss_pred             CCCHHHHHHHHHhhHHHHhhhchh--hHHhhHHHHHHHHh--cCCChHHHHHHHHHHHHHHHhh-ChhhHHHHHHHHHHH
Q 006898          369 DEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELA--EDRHWRVRLAIIEYIPLLASQL-GVGFFDDKLGALCMQ  443 (626)
Q Consensus       369 d~~~~vr~~a~~~L~~~~~~~~~~--~~~~~i~~~l~~~~--~~~~~~~r~~~~~~l~~l~~~~-~~~~~~~~l~p~l~~  443 (626)
                      +...+|-...+++|..+++.-...  .....+.|....+.  ...++.+-..+...+..+.+.. ........++|.+..
T Consensus       541 ~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPslis  620 (1005)
T KOG2274|consen  541 KSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQERLIPSLIS  620 (1005)
T ss_pred             cccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence            888899999999998887653221  12245667665553  2334456666666666555422 111234678888888


Q ss_pred             HhcCCc----hHHHHHHHHHHHHHHHHhChH---HHhhhhHHHHHhh-hcCCChHHHHHHHHHHHHhccccC--------
Q 006898          444 WLQDKV----YSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLEM-INNPHYLYRMTILRAISLLAPVMG--------  507 (626)
Q Consensus       444 ~l~d~~----~~VR~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~-l~~~~~~vR~~a~~~l~~i~~~~~--------  507 (626)
                      .++-++    .....-+...|..+.+.-.++   .+....+|.+.+. +...+..+-+.+-+|+..++..-.        
T Consensus       621 il~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~  700 (1005)
T KOG2274|consen  621 VLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHD  700 (1005)
T ss_pred             HHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhcc
Confidence            886655    556667778888777765443   3457778888885 455677788888888888765311        


Q ss_pred             -hHHhhhcHHHHHhhhCC
Q 006898          508 -SEITCSRLLPVVINASK  524 (626)
Q Consensus       508 -~~~~~~~~l~~l~~~l~  524 (626)
                       +..-...++..+.++++
T Consensus       701 e~g~~~~yImqV~sqLLd  718 (1005)
T KOG2274|consen  701 EPGHNLWYIMQVLSQLLD  718 (1005)
T ss_pred             CCCccHHHHHHHHHHHcC
Confidence             11112356666766663

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=0.00024  Score=72.22  Aligned_cols=278  Identities=17%  Similarity=0.104  Sum_probs=157.3

Q ss_pred             HhhHhHHhcCCCChHHHHHHHHHHHHhcCC-CCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHH
Q 006898          145 ACGLFHIAYPSAPDILKTELRSIYTQLCQD-DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAV  223 (626)
Q Consensus       145 a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d-~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~  223 (626)
                      |.-.++.+-.+-+...    .+.|...+.+ +++.||..++-.||-.+-.-.    ..+++..+...+..++.-.-++|.
T Consensus       399 alyAlGLIhA~hG~~~----~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa----~~eiYe~lKevLy~D~AvsGEAAg  470 (929)
T KOG2062|consen  399 ALYALGLIHANHGRGI----TDYLLQQLKTAENEVVRHGACLGLGLAGMGSA----NEEIYEKLKEVLYNDSAVSGEAAG  470 (929)
T ss_pred             hhhhhhccccCcCccH----HHHHHHHHHhccchhhhhhhhhhccchhcccc----cHHHHHHHHHHHhccchhhhhHHH
Confidence            3444444433333333    3334433333 367789988887765433211    245667777777666555555555


Q ss_pred             HHHHHhhcccCchhhhhhhHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHH
Q 006898          224 EGCAALGKLLEPQDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAG  302 (626)
Q Consensus       224 ~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~  302 (626)
                      -+++-+.-.....    ..+.-+.....+. ..++.+..+-.|.-+.  +|.   .++.-|++-+++.|.+|-+|...+.
T Consensus       471 i~MGl~mlGt~~~----eaiedm~~Ya~ETQHeki~RGl~vGiaL~~--ygr---qe~Ad~lI~el~~dkdpilR~~Gm~  541 (929)
T KOG2062|consen  471 IAMGLLMLGTANQ----EAIEDMLTYAQETQHEKIIRGLAVGIALVV--YGR---QEDADPLIKELLRDKDPILRYGGMY  541 (929)
T ss_pred             HhhhhHhhCcCcH----HHHHHHHHHhhhhhHHHHHHHHHHhHHHHH--hhh---hhhhHHHHHHHhcCCchhhhhhhHH
Confidence            5665544333222    2233333333222 2334444333333222  232   2345577778888888888888776


Q ss_pred             hHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcC-CCHHHHHHHHHh
Q 006898          303 KVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD-EFPDVRLNIISK  381 (626)
Q Consensus       303 ~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~  381 (626)
                      +++---...|.......++   --..+|.+..||+++.-+++.++-.      .+...|-.+.+|.+ -++.||.+++-+
T Consensus       542 t~alAy~GTgnnkair~lL---h~aVsD~nDDVrRaAVialGFVl~~------dp~~~~s~V~lLses~N~HVRyGaA~A  612 (929)
T KOG2062|consen  542 TLALAYVGTGNNKAIRRLL---HVAVSDVNDDVRRAAVIALGFVLFR------DPEQLPSTVSLLSESYNPHVRYGAAMA  612 (929)
T ss_pred             HHHHHHhccCchhhHHHhh---cccccccchHHHHHHHHHheeeEec------ChhhchHHHHHHhhhcChhhhhhHHHH
Confidence            6644322223332222222   2236788889999988888776522      22345556666654 478899999989


Q ss_pred             hHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhH--HHHHHHHHHHHhcCCchHH
Q 006898          382 LDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLQDKVYSI  452 (626)
Q Consensus       382 L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~--~~~l~p~l~~~l~d~~~~V  452 (626)
                      |+-.|...|..    ..+..|..+..|+.-.||..++-++..+.-+..+...  ...+...+.+.+.|++.+.
T Consensus       613 LGIaCAGtG~~----eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~  681 (929)
T KOG2062|consen  613 LGIACAGTGLK----EAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDG  681 (929)
T ss_pred             HhhhhcCCCcH----HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhHH
Confidence            88888777753    4556666677788888888888887776554432211  1345556666666666554

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.38  E-value=2e-06  Score=66.11  Aligned_cols=26  Identities=31%  Similarity=0.415  Sum_probs=11.7

Q ss_pred             HHHHHHhccCCCHHHHHHHHHHHHhh
Q 006898          321 LPCVKELSSDSSQHVRSALASVIMGM  346 (626)
Q Consensus       321 ~~~l~~l~~d~~~~vr~~~~~~l~~l  346 (626)
                      +|.+.++++|+++.||.+++.+++.+
T Consensus        33 ~~~L~~~l~d~~~~vr~~a~~aL~~i   58 (88)
T PF13646_consen   33 IPALIELLKDEDPMVRRAAARALGRI   58 (88)
T ss_dssp             HHHHHHHHTSSSHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            34444444444444444444444444

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.37  E-value=0.0025  Score=62.22  Aligned_cols=248  Identities=16%  Similarity=0.135  Sum_probs=141.3

Q ss_pred             hHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCch--hhhhhhHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHhCCCccc
Q 006898          202 DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVI-VNFSQDKSWRVRYMVANQLYELCEAVGPEPTR  278 (626)
Q Consensus       202 ~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l-~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~  278 (626)
                      .++-.+..-..|++..+|..|+..|++.++..+.+  .+.+.++..+ ..+..+.+..|...+..++..+..........
T Consensus       258 s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~  337 (533)
T KOG2032|consen  258 SVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLE  337 (533)
T ss_pred             HHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchh
Confidence            34444555567888899999999999999986653  2333444444 45556667888888888888777655433322


Q ss_pred             cc---hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChH---HHHH----hhHHHHHHhccCCCHHHHHHHHHHHHhhhh
Q 006898          279 MD---LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQ----HILPCVKELSSDSSQHVRSALASVIMGMAP  348 (626)
Q Consensus       279 ~~---l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~----~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~  348 (626)
                      ..   +.-.+.+++.|+++++|.+++..++.+....|..   .+.+    .+.|.+.. ++|+++.+-.++-..+.....
T Consensus       338 ~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllh-l~d~~p~va~ACr~~~~~c~p  416 (533)
T KOG2032|consen  338 SYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLH-LQDPNPYVARACRSELRTCYP  416 (533)
T ss_pred             hhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceee-eCCCChHHHHHHHHHHHhcCc
Confidence            33   3333456778899999999999999998877643   2222    23333322 478899887776655555554


Q ss_pred             hhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHH-------hcCCCh-HHHHHHHHH
Q 006898          349 LLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL-------AEDRHW-RVRLAIIEY  420 (626)
Q Consensus       349 ~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~-------~~~~~~-~~r~~~~~~  420 (626)
                      .++.+....    .+-..+ |.+.. |-.+.  ...++..+      ..+.|.+..+       +-+.+| .+|.++...
T Consensus       417 ~l~rke~~~----~~q~~l-d~~~~-~~q~F--yn~~c~~L------~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~  482 (533)
T KOG2032|consen  417 NLVRKELYH----LFQESL-DTDMA-RFQAF--YNQWCIQL------NHIHPDILMLLLTEDQHIFSSSWEQVREAAVLK  482 (533)
T ss_pred             hhHHHHHHH----HHhhhh-HHhHH-HHHHH--HHHHHHHH------hhhCHHHHHHHHHhchhheecchHHHHHHHHHH
Confidence            444332221    111111 21111 11110  01111111      1222222222       224566 677776665


Q ss_pred             HHHHHHhhChhh----HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 006898          421 IPLLASQLGVGF----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLA  464 (626)
Q Consensus       421 l~~l~~~~~~~~----~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~  464 (626)
                      -......+....    ....+...+..+..|+-++|+..|.++++.+.
T Consensus       483 t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~  530 (533)
T KOG2032|consen  483 TTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLS  530 (533)
T ss_pred             HHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence            555444433322    22445556666778888888888888877664

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.36  E-value=0.00023  Score=72.08  Aligned_cols=169  Identities=15%  Similarity=0.092  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc--cchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchh
Q 006898          160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD  237 (626)
Q Consensus       160 ~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~  237 (626)
                      ..+.++..++...+.++..||..+++.+..+....+.  +...+.+...+..-+.|..+.||..|+.+|..+-..-+.+ 
T Consensus        82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de-  160 (892)
T KOG2025|consen   82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE-  160 (892)
T ss_pred             HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC-
Confidence            4455555555555566666666666666665553332  2333444455555556666666666666665554322211 


Q ss_pred             hhhhhHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHh-HHHHHHhhChHH
Q 006898          238 CVAHILPVIVNF-SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGK-VTKFCRILNPEL  315 (626)
Q Consensus       238 ~~~~i~~~l~~~-~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~-l~~l~~~~~~~~  315 (626)
                       .-.+...+..+ -+||+.+||+++..++..          .+.-.|.++....|-+.-+|+.+... ++++ ...... 
T Consensus       161 -e~~v~n~l~~liqnDpS~EVRRaaLsnI~v----------dnsTlp~IveRarDV~~anRrlvY~r~lpki-d~r~ls-  227 (892)
T KOG2025|consen  161 -ECPVVNLLKDLIQNDPSDEVRRAALSNISV----------DNSTLPCIVERARDVSGANRRLVYERCLPKI-DLRSLS-  227 (892)
T ss_pred             -cccHHHHHHHHHhcCCcHHHHHHHHHhhcc----------CcccchhHHHHhhhhhHHHHHHHHHHhhhhh-hhhhhh-
Confidence             12233333332 255666666665544431          23345555566666555555544322 2222 110000 


Q ss_pred             HHHhhHHHHHHhccCCCHHHHHHHHHHH
Q 006898          316 AIQHILPCVKELSSDSSQHVRSALASVI  343 (626)
Q Consensus       316 ~~~~l~~~l~~l~~d~~~~vr~~~~~~l  343 (626)
                       .+.-.-.+...++|.+..||.++..++
T Consensus       228 -i~krv~LlewgLnDRe~sVk~A~~d~i  254 (892)
T KOG2025|consen  228 -IDKRVLLLEWGLNDREFSVKGALVDAI  254 (892)
T ss_pred             -HHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence             122234445555666666666655543

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.35  E-value=0.002  Score=72.73  Aligned_cols=457  Identities=14%  Similarity=0.137  Sum_probs=254.1

Q ss_pred             HHhhHhHHhcCCCChHHHHHHHHHHHHhcCCC----CHHHHHHHHH--h----HHHHHHhhC-----ccchhhhHHHHHH
Q 006898          144 SACGLFHIAYPSAPDILKTELRSIYTQLCQDD----MPMVRRSAAS--N----LGKFAATVE-----PAHLKTDIMSIFE  208 (626)
Q Consensus       144 ~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~----~~~vR~~a~~--~----l~~l~~~~~-----~~~~~~~ll~~l~  208 (626)
                      .+...++.++++.+...+-.++..+.......    ...|+..+..  +    ++.+++..+     ++.+...-+..+.
T Consensus       803 ta~~lfg~vfp~v~~k~~~~ile~~~esi~~sk~~r~qsV~~~a~t~~al~s~lk~l~e~~~~~~lg~e~v~~~~~~l~~  882 (2067)
T KOG1822|consen  803 TAVSLFGSVFPHVNNKIRLSILEHFPESIKQSKSARQQSVQVNAVTWQALLSALKYLAEFKGATSLGPEEVRSSALTLIV  882 (2067)
T ss_pred             HHHHHHHHhccCccHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHh
Confidence            56678888889988877777777766654432    2234443333  3    333333322     2333333455566


Q ss_pred             HhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHhCCCccc---cchHHH
Q 006898          209 DLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGPEPTR---MDLVPA  284 (626)
Q Consensus       209 ~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~-~d~~~~vR~~a~~~l~~l~~~~~~~~~~---~~l~~~  284 (626)
                      ..+..+++..|-.+.++++.++...+...+...+.....+-+ +-.++..|..-.-++|.+-++.|.-...   ..-+..
T Consensus       883 ~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~i  962 (2067)
T KOG1822|consen  883 NSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSI  962 (2067)
T ss_pred             hhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHH
Confidence            777888999999999999999999998777777666655444 4456667777777888888877654333   334557


Q ss_pred             HHHhcCCCh-HHHHHHHHHhHHHHHHhhChHH--HHHhhHHHHHH-hccCC--CHHHHHHHHHHHH------hhhhhhcH
Q 006898          285 YVRLLRDNE-AEVRIAAAGKVTKFCRILNPEL--AIQHILPCVKE-LSSDS--SQHVRSALASVIM------GMAPLLGK  352 (626)
Q Consensus       285 l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~-l~~d~--~~~vr~~~~~~l~------~l~~~~~~  352 (626)
                      ++.+..|+. |.|+..++.++..+....++-.  +...-+-.+.. ++.++  +..+++..-+++.      .+....|+
T Consensus       963 llal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alittlgp 1042 (2067)
T KOG1822|consen  963 LLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALITTLGP 1042 (2067)
T ss_pred             HHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHHhccc
Confidence            778888877 5999999999999887665542  11222222222 33333  3455555554444      44444433


Q ss_pred             HH-----------HHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHH
Q 006898          353 DA-----------TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI  421 (626)
Q Consensus       353 ~~-----------~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l  421 (626)
                      +.           .....+-.+.-.+..+++.+..+++.++..+.-......-.+.+++.+..++.....-.|.+.+..+
T Consensus      1043 eL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~~~l~s~~~i~r~~~~~cl 1122 (2067)
T KOG1822|consen 1043 ELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLCSLLSSSYLILRRASFSCL 1122 (2067)
T ss_pred             ccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHHHHhcchhhhhhhhHHhhh
Confidence            21           1112222333344566888888898888776443333222355677777776666555555544444


Q ss_pred             HHHHHhhChhhH----------------HHHHH-----H-HHHHHhcC-CchHHHHHHHHHHHHHHHHhChH----H---
Q 006898          422 PLLASQLGVGFF----------------DDKLG-----A-LCMQWLQD-KVYSIRDAAANNLKRLAEEFGPE----W---  471 (626)
Q Consensus       422 ~~l~~~~~~~~~----------------~~~l~-----p-~l~~~l~d-~~~~VR~~a~~~l~~l~~~~~~~----~---  471 (626)
                      -.++........                ...+.     + .++.++.- .+...+..-..+|..+...+..+    |   
T Consensus      1123 rql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l~~~I~~tl~~~~~~~~~~~ls~Wl~l 1202 (2067)
T KOG1822|consen 1123 RQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKLLKNILETLSRMLNSLADELLSSWLML 1202 (2067)
T ss_pred             hHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            444332110000                00011     1 12222221 11122222333333321111000    0   


Q ss_pred             ------------------------------HhhhhHHHHHhhh------cCCChHHHHHHHHHHHHhccccChH------
Q 006898          472 ------------------------------AMQHITPQVLEMI------NNPHYLYRMTILRAISLLAPVMGSE------  509 (626)
Q Consensus       472 ------------------------------~~~~il~~l~~~l------~~~~~~vR~~a~~~l~~i~~~~~~~------  509 (626)
                                                    ..+..++.-....      -.|.|..|..++.++..++..+...      
T Consensus      1203 ~k~~l~~~~~~s~~~e~s~~kd~~~~~~~~~dDdt~~~t~~~~~~s~p~~qprW~Trvfaa~cv~r~i~~c~a~~~h~d~ 1282 (2067)
T KOG1822|consen 1203 LKDLLQAAEDFSASKELSGEKDEEDEEQESGDDDTVLTTVSRTDDSKPLVQPRWPTRVFAAECVLRIINVCEAVSAHFDM 1282 (2067)
T ss_pred             HHHHHHHhhhccccccccccccccchhhcccchhhHHhhhccccccCCccccccchHHHHHHHHHHHhhhhhhhhhhhhH
Confidence                                          0122223322222      1247999999999999776554421      


Q ss_pred             --------------Hh----hhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhcc------------chhhhcccchHH
Q 006898          510 --------------IT----CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ------------SVSTFSVSPFSF  559 (626)
Q Consensus       510 --------------~~----~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~------------~~~~~~i~~~l~  559 (626)
                                    .+    ...+...-.....+++...|....+.+..++..+..            +.++..+-.++.
T Consensus      1283 ~la~e~k~~n~e~~d~LvlhlsDLirmsFmaaT~~n~~Lrl~Gl~~L~~vi~~fSsvpEPeFpGh~iLEQ~qAqvgsAlr 1362 (2067)
T KOG1822|consen 1283 ALASEHKLENLERNDYLVLHLSDLIRMSFMAATSDNSQLRLAGLESLEEVIKRFSSVPEPEFPGHSILEQFQAQVGSALR 1362 (2067)
T ss_pred             HHHHHHHhhccchhhHHHHHHHHHHHHHHHHhcCchhhhhhccHHHHHHHHhccCCCCCCCCCchhHHHHHHHHHHHHhc
Confidence                          00    011222222344788899999999999998877643            133344444444


Q ss_pred             hhhccCCCcccccccccCchhHHHHHHHHHHHHHhhcCCcccccchhhHHHHH
Q 006898          560 MLYLNVNNFNVGFIFAAFPLVLFSCLALNYCHRWWRKQSVPVWLSSLRIQMLM  612 (626)
Q Consensus       560 ~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~~~~~~~~~~~~~~~~~~~~~~  612 (626)
                      -++.+|..++|-.            .|+..+..+++.-..+.-.+.-|++-+-
T Consensus      1363 pAF~~dts~dv~a------------~acqVcS~wigsgv~~dl~dl~rVhqLL 1403 (2067)
T KOG1822|consen 1363 PAFSDDTSPDVTA------------KACQVCSTWIGSGVARDLSDLSRVHQLL 1403 (2067)
T ss_pred             hhccCCCChHHHH------------HHHHHHHHHHhccccccHHHHHHHHHHH
Confidence            2445676677555            6667777777777777666666666543

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.34  E-value=0.0001  Score=76.16  Aligned_cols=215  Identities=18%  Similarity=0.187  Sum_probs=154.6

Q ss_pred             HhccCCCHHHHHHHHHHHHhhhhhhcH--HHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHH
Q 006898          326 ELSSDSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV  403 (626)
Q Consensus       326 ~l~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~  403 (626)
                      ..+.|+...+|..+...+..+.+...+  -.....++.+....++|+++.|-.+|++.+..+++...     +.++|.+.
T Consensus       734 ~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~-----e~il~dL~  808 (982)
T KOG4653|consen  734 SSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP-----EDILPDLS  808 (982)
T ss_pred             HHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc-----hhhHHHHH
Confidence            344667778888888888888774322  23355688899999999999999999998888887743     56788887


Q ss_pred             HHhcC----CChHHHHHHHHHHHHHHHhhChhhH--HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhC---hHHHhh
Q 006898          404 ELAED----RHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG---PEWAMQ  474 (626)
Q Consensus       404 ~~~~~----~~~~~r~~~~~~l~~l~~~~~~~~~--~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~---~~~~~~  474 (626)
                      +.+.+    .....|...-+++..+++..|+=.+  ...+...++....|++...|..++..+|.++....   .+ ...
T Consensus       809 e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd-~~~  887 (982)
T KOG4653|consen  809 EEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD-FFH  887 (982)
T ss_pred             HHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH-HHH
Confidence            75432    2245566666999999999886443  35788889999999999999999999999998653   33 334


Q ss_pred             hhHHHHHhh-hcCCChHHHHHHHHHHHHhccccChHHh--h----hcHHHHHhhh-CCCCCchHHHHHHHHHHHHHhhhc
Q 006898          475 HITPQVLEM-INNPHYLYRMTILRAISLLAPVMGSEIT--C----SRLLPVVINA-SKDRVPNIKFNVAKVLQSLIPIVD  546 (626)
Q Consensus       475 ~il~~l~~~-l~~~~~~vR~~a~~~l~~i~~~~~~~~~--~----~~~l~~l~~~-l~d~~~~vR~~a~~~l~~i~~~~~  546 (626)
                      +++..+... ..|....+|.+|+..+..+....|....  .    -.....+... -.+++..+|..++.++.++-..+.
T Consensus       888 ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~l~  967 (982)
T KOG4653|consen  888 EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAALE  967 (982)
T ss_pred             HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHH
Confidence            445555543 4578899999999999999887664310  0    0111122222 257777899999999988866554

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=98.33  E-value=6.6e-05  Score=66.10  Aligned_cols=72  Identities=19%  Similarity=0.185  Sum_probs=33.5

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChH
Q 006898          398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE  470 (626)
Q Consensus       398 i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~  470 (626)
                      .+|.+...++|+++.+|..++..+..+... +.-.....++..+..++.|+++.||..|..++..+....+++
T Consensus        26 ~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~   97 (178)
T PF12717_consen   26 YLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPN   97 (178)
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccch
Confidence            344444444444444444444444443321 111122333344455556666666666666666666553333

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.33  E-value=5.8e-06  Score=63.47  Aligned_cols=85  Identities=28%  Similarity=0.414  Sum_probs=61.0

Q ss_pred             HHHHHhc-cCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHH
Q 006898          322 PCVKELS-SDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP  400 (626)
Q Consensus       322 ~~l~~l~-~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~  400 (626)
                      |.+.+.+ +|+++.+|..++.+++.+.        .+..+|.+..+++|+++.||..|+.+|+.+..        +..++
T Consensus         2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------~~~~~   65 (88)
T PF13646_consen    2 PALLQLLQNDPDPQVRAEAARALGELG--------DPEAIPALIELLKDEDPMVRRAAARALGRIGD--------PEAIP   65 (88)
T ss_dssp             HHHHHHHHTSSSHHHHHHHHHHHHCCT--------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------HHTHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHcC--------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHHH
Confidence            4455544 7888999998888888654        23567888888888999999999999887742        34667


Q ss_pred             HHHHHhcCC-ChHHHHHHHHHHH
Q 006898          401 AIVELAEDR-HWRVRLAIIEYIP  422 (626)
Q Consensus       401 ~l~~~~~~~-~~~~r~~~~~~l~  422 (626)
                      .+.+.+.++ ++.+|..++.+++
T Consensus        66 ~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   66 ALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCcHHHHHHHHhhcC
Confidence            777766554 4556777776653

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=0.0018  Score=59.68  Aligned_cols=243  Identities=12%  Similarity=0.109  Sum_probs=147.5

Q ss_pred             HHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChH--------HHHHHHHHHHHhcCCCC
Q 006898          105 KAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--------LKTELRSIYTQLCQDDM  176 (626)
Q Consensus       105 ~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~--------~~~~l~~~l~~l~~d~~  176 (626)
                      .++.++.++.+...+..+...++|-+...+..++..++..+|..++.+.+.++..        .-.++++.++.++..++
T Consensus        62 lcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged  141 (524)
T KOG4413|consen   62 LCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED  141 (524)
T ss_pred             hHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc
Confidence            3778888888887777777788899988888888999999999999998888742        13568888899999999


Q ss_pred             HHHHHHHHHhHHHHHHhhCc--cchhhhHHH--HHHHhhcCCchhHHHHHHHHHHHhhcccCc---hhhhhhhHHHHHHh
Q 006898          177 PMVRRSAASNLGKFAATVEP--AHLKTDIMS--IFEDLTQDDQDSVRLLAVEGCAALGKLLEP---QDCVAHILPVIVNF  249 (626)
Q Consensus       177 ~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~--~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~  249 (626)
                      -.|-+++.+.+..++..-..  -.+.+++++  .+.++....++-+|......+..+.+..+.   +.....++..+..-
T Consensus       142 deVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaE  221 (524)
T KOG4413|consen  142 DEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAE  221 (524)
T ss_pred             HHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHH
Confidence            99999999999998764211  011111111  112222223344555555555554443332   11233455555444


Q ss_pred             c-CCCCHHHHHHHHHHHHHHHHHh-CCCccc-cchHHHHHHhcC--CChHHHHHHHHHhHHHHHHhhChHHH--------
Q 006898          250 S-QDKSWRVRYMVANQLYELCEAV-GPEPTR-MDLVPAYVRLLR--DNEAEVRIAAAGKVTKFCRILNPELA--------  316 (626)
Q Consensus       250 ~-~d~~~~vR~~a~~~l~~l~~~~-~~~~~~-~~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~--------  316 (626)
                      + ...+.-||..+.+....++..- |.+... +.++..+.+.+.  |.+|--.-.   ++..+++.+|.+.+        
T Consensus       222 lkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfr---almgfgkffgkeaimdvseeai  298 (524)
T KOG4413|consen  222 LKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFR---ALMGFGKFFGKEAIMDVSEEAI  298 (524)
T ss_pred             hcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHH---HHHHHHHHhcchHHhhcCHHHH
Confidence            4 3467788999888888887754 333322 245555555553  444444333   34444444444322        


Q ss_pred             HHhhH---HHHHHhccCCCHHHHHHHHHHHHhhhhhh
Q 006898          317 IQHIL---PCVKELSSDSSQHVRSALASVIMGMAPLL  350 (626)
Q Consensus       317 ~~~l~---~~l~~l~~d~~~~vr~~~~~~l~~l~~~~  350 (626)
                      .+.++   .-..+..+..++....+++.+++.+++..
T Consensus       299 cealiiaidgsfEmiEmnDpdaieaAiDalGilGSnt  335 (524)
T KOG4413|consen  299 CEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNT  335 (524)
T ss_pred             HHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCc
Confidence            11111   11223445566677788888888887643

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=98.31  E-value=5e-06  Score=68.35  Aligned_cols=107  Identities=15%  Similarity=0.082  Sum_probs=79.0

Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhC---hHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChH---
Q 006898          436 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG---PEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---  509 (626)
Q Consensus       436 ~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~---~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~---  509 (626)
                      .++|.+..++.+.++.+|..++.+++.++....   .......++|.+.+++.++++.+|..++.++++++...+..   
T Consensus         7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~   86 (120)
T cd00020           7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI   86 (120)
T ss_pred             CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence            356667777777778888888888888875421   12233478888888888888888888888888888754321   


Q ss_pred             HhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHH
Q 006898          510 ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI  542 (626)
Q Consensus       510 ~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~  542 (626)
                      .....+++.+...+++.+..+|..++++|..+.
T Consensus        87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            223457888888888888889999888888764

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=98.31  E-value=5.4e-05  Score=66.63  Aligned_cols=112  Identities=20%  Similarity=0.200  Sum_probs=81.0

Q ss_pred             chHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHH
Q 006898           99 ETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPM  178 (626)
Q Consensus        99 ~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~  178 (626)
                      ++.||..++.+++.++...+.  +.+.+.|.+...+.|+++.+|..|..++..+...-.-..+..++..+..++.|+++.
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~   78 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPE   78 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHH
Confidence            356788888888887777653  334456677777778888888888888777765543345566767777888999999


Q ss_pred             HHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhc
Q 006898          179 VRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ  212 (626)
Q Consensus       179 vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~  212 (626)
                      ||..|...+..+.....++.+.+.+.+.+..+-+
T Consensus        79 Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~  112 (178)
T PF12717_consen   79 IRSLARSFFSELLKKRNPNIIYNNFPELISSLNN  112 (178)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence            9999999999998876666665655555555443

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=0.00065  Score=70.28  Aligned_cols=186  Identities=18%  Similarity=0.170  Sum_probs=131.1

Q ss_pred             cHHHHHHHhcCc-cHHHHHHHHhhHHHHHHhhChHhh-----hhhhcccccc-cc-CCchHHHHHHHHHHhccccccCCc
Q 006898           10 PIAVLIDELKND-DIQLRLNSIRRLSTIARALGEERT-----RKELIPFLSE-NN-DDDDEVLLAMAEELGVFIPYVGGV   81 (626)
Q Consensus        10 ~i~~l~~~l~s~-d~~~r~~a~~~l~~i~~~~~~~~~-----~~~l~~~l~~-~~-~~~~~vr~~~~~~l~~~~~~~~~~   81 (626)
                      .+..|++.++.. |+....+|++-+.++ ..+|.+.+     .+.++|.|.. +. ..+.++...|++++..+...++..
T Consensus       168 k~kkLL~gL~~~~Des~Qleal~Elce~-L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S  246 (1051)
T KOG0168|consen  168 KAKKLLQGLQAESDESQQLEALTELCEM-LSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS  246 (1051)
T ss_pred             HHHHHHHhccccCChHHHHHHHHHHHHH-HhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence            788999999977 999999999999988 44554443     4577888877 33 458899999999999987766532


Q ss_pred             c---hhhcchHH-HhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCC
Q 006898           82 E---HAHVLLPP-LETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP  157 (626)
Q Consensus        82 ~---~~~~l~~~-l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~  157 (626)
                      .   ..+-.+|. +.+|..-+--+|-+.+.+++..|.+.-+...+...-+......+.=-...++..|..+.++++..+.
T Consensus       247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~  326 (1051)
T KOG0168|consen  247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR  326 (1051)
T ss_pred             hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            1   11224554 5667777777899999999999988877655443211111111111112344456666667777665


Q ss_pred             hH---HHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc
Q 006898          158 DI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP  196 (626)
Q Consensus       158 ~~---~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~  196 (626)
                      .+   ..-+.+|+|..+++..+.++=..++.++.+++..+.+
T Consensus       327 sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h  368 (1051)
T KOG0168|consen  327 SDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQH  368 (1051)
T ss_pred             CccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhccc
Confidence            53   6678899999999998888888899999999987754

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=6.2e-05  Score=76.27  Aligned_cols=293  Identities=17%  Similarity=0.118  Sum_probs=146.4

Q ss_pred             CccHHHHHHHHhhHHHHHHhhChHh-hhhhhcccccc-ccCCchHHHHHHHHHHhccccccCCcchhhcchHH-Hhhhhc
Q 006898           20 NDDIQLRLNSIRRLSTIARALGEER-TRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP-LETLCT   96 (626)
Q Consensus        20 s~d~~~r~~a~~~l~~i~~~~~~~~-~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~-l~~l~~   96 (626)
                      +.++ -++.|.-.|+.|  +.|.+. ..+-+-|+|-. .....+-.--.+..++|-+-..-|.     .+... +..|-+
T Consensus       353 AtNW-aKFtAtAsLGvI--H~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~-----~~~~yL~~~Lk~  424 (929)
T KOG2062|consen  353 ATNW-AKFTATASLGVI--HRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGR-----GITDYLLQQLKT  424 (929)
T ss_pred             cchH-hhhhhhhhccee--eccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCc-----cHHHHHHHHHHh
Confidence            4455 347788888887  334333 35666777765 2222332333455566655332221     23333 333445


Q ss_pred             CcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhc-CCCChHHHHHHHHHHHHhcCC-
Q 006898           97 VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAY-PSAPDILKTELRSIYTQLCQD-  174 (626)
Q Consensus        97 ~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~-~~~~~~~~~~l~~~l~~l~~d-  174 (626)
                      .+++.||+.++-.++-..-.-..+.    +...+...+..++...-.+|.-.++.+. .....+..++    +.....+ 
T Consensus       425 ~~~e~v~hG~cLGlGLa~mGSa~~e----iYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaied----m~~Ya~ET  496 (929)
T KOG2062|consen  425 AENEVVRHGACLGLGLAGMGSANEE----IYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIED----MLTYAQET  496 (929)
T ss_pred             ccchhhhhhhhhhccchhcccccHH----HHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHH----HHHHhhhh
Confidence            5677888888777765544333332    3334444444443333333333333332 2222222222    2222222 


Q ss_pred             CCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCC
Q 006898          175 DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKS  254 (626)
Q Consensus       175 ~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~  254 (626)
                      +...+.+..+-.++-..-  +.+   +..-|++.+++.|.++..|..+...++---...+..   ..+-..+.-..+|.+
T Consensus       497 QHeki~RGl~vGiaL~~y--grq---e~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnn---kair~lLh~aVsD~n  568 (929)
T KOG2062|consen  497 QHEKIIRGLAVGIALVVY--GRQ---EDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNN---KAIRRLLHVAVSDVN  568 (929)
T ss_pred             hHHHHHHHHHHhHHHHHh--hhh---hhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCch---hhHHHhhcccccccc
Confidence            223444444433333222  111   234456666777777777766655544322222221   122222333466777


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCH
Q 006898          255 WRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQ  333 (626)
Q Consensus       255 ~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~  333 (626)
                      ..||++|+.+||-+.-.      .....|...+++.+ -++-||-+++-+|+..|...|...    .+..+..+.+|+..
T Consensus       569 DDVrRaAVialGFVl~~------dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e----Ai~lLepl~~D~~~  638 (929)
T KOG2062|consen  569 DDVRRAAVIALGFVLFR------DPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE----AINLLEPLTSDPVD  638 (929)
T ss_pred             hHHHHHHHHHheeeEec------ChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH----HHHHHhhhhcChHH
Confidence            77777777777755422      12333444454443 346777777777777776666543    24555556667777


Q ss_pred             HHHHHHHHHHHhh
Q 006898          334 HVRSALASVIMGM  346 (626)
Q Consensus       334 ~vr~~~~~~l~~l  346 (626)
                      -||+.++-++.-+
T Consensus       639 fVRQgAlIa~amI  651 (929)
T KOG2062|consen  639 FVRQGALIALAMI  651 (929)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777766555544

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=98.29  E-value=0.00017  Score=64.34  Aligned_cols=84  Identities=21%  Similarity=0.313  Sum_probs=52.0

Q ss_pred             HhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCC--chhHHHHHHHHHHHhhcccCchhhhhhhHHHHH
Q 006898          170 QLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD--QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIV  247 (626)
Q Consensus       170 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~  247 (626)
                      +...|.+...+...+.++++...        .+-+|.+...+.|+  .+.||..|.++|++++        .+...+++.
T Consensus        43 ka~~d~s~llkhe~ay~LgQ~~~--------~~Av~~l~~vl~desq~pmvRhEAaealga~~--------~~~~~~~l~  106 (289)
T KOG0567|consen   43 KAFIDDSALLKHELAYVLGQMQD--------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG--------DPESLEILT  106 (289)
T ss_pred             Hhcccchhhhccchhhhhhhhcc--------chhhHHHHHHhcccccchHHHHHHHHHHHhhc--------chhhHHHHH
Confidence            33344445555555555655432        34556666666665  4567778888887765        344667777


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHH
Q 006898          248 NFSQDKSWRVRYMVANQLYELC  269 (626)
Q Consensus       248 ~~~~d~~~~vR~~a~~~l~~l~  269 (626)
                      +..+|+...||.++..++..+-
T Consensus       107 k~~~dp~~~v~ETc~lAi~rle  128 (289)
T KOG0567|consen  107 KYIKDPCKEVRETCELAIKRLE  128 (289)
T ss_pred             HHhcCCccccchHHHHHHHHHH
Confidence            7777777778877666665553

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=98.24  E-value=5.9e-05  Score=69.63  Aligned_cols=184  Identities=16%  Similarity=0.154  Sum_probs=114.6

Q ss_pred             HHHhcC-CCCHHHHHHHHHhHHHHHHhhCccchhh--hHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHH
Q 006898          168 YTQLCQ-DDMPMVRRSAASNLGKFAATVEPAHLKT--DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP  244 (626)
Q Consensus       168 l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~~~~~~--~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~  244 (626)
                      +..+++ .+++.+++.+..+++..+..-..+....  ..++.+..++.++++.+|..|+.++.+++.........+..++
T Consensus        17 Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~   96 (254)
T PF04826_consen   17 LLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIP   96 (254)
T ss_pred             HHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHH
Confidence            334434 5678899999998888765432222222  3678889999999999999999999988766555333333333


Q ss_pred             HHHH-hcCC-CCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC--hHHHHHhh
Q 006898          245 VIVN-FSQD-KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN--PELAIQHI  320 (626)
Q Consensus       245 ~l~~-~~~d-~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l  320 (626)
                      .+.+ ..++ .+..++.++.+.|..+.............+|.++.++...+..+|..+++.|..+++.-.  .+.+....
T Consensus        97 ~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~  176 (254)
T PF04826_consen   97 QVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQV  176 (254)
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccc
Confidence            3333 3333 356778888888887753322112223457777888888888889889888888876432  22333344


Q ss_pred             HHHHHHhccCC-CHHHHHHHHHHHHhhhhhhc
Q 006898          321 LPCVKELSSDS-SQHVRSALASVIMGMAPLLG  351 (626)
Q Consensus       321 ~~~l~~l~~d~-~~~vr~~~~~~l~~l~~~~~  351 (626)
                      ...+..+.+.. +..+...++..+..+...+.
T Consensus       177 ~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~  208 (254)
T PF04826_consen  177 LSSFLSLFNSSESKENLLRVLTFFENINENIK  208 (254)
T ss_pred             hhHHHHHHccCCccHHHHHHHHHHHHHHHhhC
Confidence            45555555543 44555555666666655443

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.24  E-value=0.0032  Score=63.73  Aligned_cols=126  Identities=15%  Similarity=0.101  Sum_probs=94.0

Q ss_pred             cCCchHHHHHHHHHHHHHHHHh---ChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccCh---HHhhhcHHHHH
Q 006898          446 QDKVYSIRDAAANNLKRLAEEF---GPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---EITCSRLLPVV  519 (626)
Q Consensus       446 ~d~~~~VR~~a~~~l~~l~~~~---~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~---~~~~~~~l~~l  519 (626)
                      --.+..++.+|+.++..+...+   ........+...+.+++.||+..+...++.++.+++-.+++   .+.....+..+
T Consensus       387 ~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l  466 (678)
T KOG1293|consen  387 PIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDIL  466 (678)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHH
Confidence            4457789999999988776543   22223467788888999999999999999999999876664   34567788899


Q ss_pred             hhhCCCCCchHHHHHHHHHHHHHhhhccc---hhhhccc-chHHhhhccCCCccccc
Q 006898          520 INASKDRVPNIKFNVAKVLQSLIPIVDQS---VSTFSVS-PFSFMLYLNVNNFNVGF  572 (626)
Q Consensus       520 ~~~l~d~~~~vR~~a~~~l~~i~~~~~~~---~~~~~i~-~~l~~~l~~d~d~~vr~  572 (626)
                      ...+.++++++|..+.++|..+.-...+.   .....+. ..+. .+.+|+|+.|.+
T Consensus       467 ~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~-~l~nd~d~~Vqe  522 (678)
T KOG1293|consen  467 ESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLIL-DLINDPDWAVQE  522 (678)
T ss_pred             HHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHH-HHHhCCCHHHHH
Confidence            99999999999999999999876433321   1112222 2233 678999999988

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.24  E-value=0.0082  Score=60.88  Aligned_cols=105  Identities=18%  Similarity=0.141  Sum_probs=67.0

Q ss_pred             HHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhh------hhhhccccccccCCchHHHHHHHHHHhccccccCCcch--
Q 006898           12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERT------RKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEH--   83 (626)
Q Consensus        12 ~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~------~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~--   83 (626)
                      -.++..+-+.|++.-..|+.-..+.....++...      ..+.+-.+....+..++.....+..++.+..  +.+..  
T Consensus        12 ~~~l~~L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~--~eqd~v~   89 (678)
T KOG1293|consen   12 LDLLYRLLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFL--GEQDKVD   89 (678)
T ss_pred             HHHHHhhhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHh--hccchHH
Confidence            3566667778888777777777766554443321      2233344444566777777777777776544  22222  


Q ss_pred             ---hhcchHHHhhhhcCcc-hHHHHHHHHHHHHHHhhcC
Q 006898           84 ---AHVLLPPLETLCTVEE-TCVRDKAVESLCRIGSQMR  118 (626)
Q Consensus        84 ---~~~l~~~l~~l~~~~~-~~vR~~a~~~l~~i~~~~~  118 (626)
                         ....++-+..++++++ ..+++...+++..+.+..+
T Consensus        90 svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~  128 (678)
T KOG1293|consen   90 SVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSK  128 (678)
T ss_pred             HHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhccc
Confidence               2333445666777777 8899999999999988664

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.24  E-value=0.00084  Score=69.53  Aligned_cols=187  Identities=12%  Similarity=0.133  Sum_probs=122.5

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccc-----hhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhhcccCchh
Q 006898          164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH-----LKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQD  237 (626)
Q Consensus       164 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~-----~~~~ll~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~~  237 (626)
                      +..++..+-...++..+-.++..+.++... +.+.     -...++|.+..+++++ +.++...|+++|..+++.+++..
T Consensus       169 ~kkLL~gL~~~~Des~Qleal~Elce~L~m-gnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~  247 (1051)
T KOG0168|consen  169 AKKLLQGLQAESDESQQLEALTELCEMLSM-GNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS  247 (1051)
T ss_pred             HHHHHHhccccCChHHHHHHHHHHHHHHhh-cchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence            334444443333444444444444443332 2222     1356889999999987 67999999999999999999831


Q ss_pred             ---hhhhhHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCh
Q 006898          238 ---CVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP  313 (626)
Q Consensus       238 ---~~~~i~~~l~~-~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  313 (626)
                         .....+|.+.. +..=.--.|-+.+.+++..+.+.-++......-+-.++..+.=-.-.+++.|+.....+|+.+..
T Consensus       248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~s  327 (1051)
T KOG0168|consen  248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRS  327 (1051)
T ss_pred             heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence               23457777654 44434456778888888888877665543332222333333211346788888888999998877


Q ss_pred             H--HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhc
Q 006898          314 E--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG  351 (626)
Q Consensus       314 ~--~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~  351 (626)
                      +  .+.-+.+|.|..+++..+.++-...+-++..++..+.
T Consensus       328 d~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~  367 (1051)
T KOG0168|consen  328 DEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQ  367 (1051)
T ss_pred             ccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence            6  3345678999999998888888888888888887663

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=98.23  E-value=0.0077  Score=60.08  Aligned_cols=172  Identities=17%  Similarity=0.127  Sum_probs=105.1

Q ss_pred             hhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc--hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc
Q 006898          199 LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP  276 (626)
Q Consensus       199 ~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~  276 (626)
                      +.+.++..+......++..||..+++.+..+...+++  +...+.++.-+...+-|..+.||..|+.++..+...-+.+.
T Consensus        88 ~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee  167 (885)
T COG5218          88 LVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE  167 (885)
T ss_pred             HHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence            3344555566666677778888888888888777776  55566666677777778888888888888877765443322


Q ss_pred             cccchHHHHHHhc-CCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHH-HHHHhhhhhhcHHH
Q 006898          277 TRMDLVPAYVRLL-RDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALA-SVIMGMAPLLGKDA  354 (626)
Q Consensus       277 ~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~-~~l~~l~~~~~~~~  354 (626)
                        +.+...+...+ .|++.+||..|+..+..          .+.-.|++.+-..|-+-..|+.+. .+++.++....-+ 
T Consensus       168 --n~~~n~l~~~vqnDPS~EVRr~allni~v----------dnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~ls-  234 (885)
T COG5218         168 --NRIVNLLKDIVQNDPSDEVRRLALLNISV----------DNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLS-  234 (885)
T ss_pred             --HHHHHHHHHHHhcCcHHHHHHHHHHHeee----------CCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhcc-
Confidence              23334444333 57778888877655432          123357777767776666666544 3445544221110 


Q ss_pred             HHHhHHHHHHHhhcCCCHHHHHHHHHhhHH
Q 006898          355 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQ  384 (626)
Q Consensus       355 ~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~  384 (626)
                      ..+.+. .+.-.+.|.+.+|+.++...+..
T Consensus       235 i~kri~-l~ewgl~dRe~sv~~a~~d~ia~  263 (885)
T COG5218         235 IDKRIL-LMEWGLLDREFSVKGALVDAIAS  263 (885)
T ss_pred             ccceeh-hhhhcchhhhhhHHHHHHHHHHH
Confidence            111222 44556778888888888777654

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=98.23  E-value=9.8e-06  Score=66.56  Aligned_cols=107  Identities=18%  Similarity=0.082  Sum_probs=78.8

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh---ChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChH---
Q 006898          397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQL---GVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---  470 (626)
Q Consensus       397 ~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~---~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~---  470 (626)
                      .+++.+.+++.+++|.+|..++.++..++...   ........++|.+..++.|+++.+|..++.+++.++......   
T Consensus         7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~   86 (120)
T cd00020           7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI   86 (120)
T ss_pred             CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence            45666777777777777777777777776532   122233467888888889999999999999999998654321   


Q ss_pred             HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 006898          471 WAMQHITPQVLEMINNPHYLYRMTILRAISLLA  503 (626)
Q Consensus       471 ~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~  503 (626)
                      .....+++.+.+.+++++..+|..++.++.+++
T Consensus        87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            123557889999999889999999999998875

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=98.21  E-value=0.00036  Score=70.84  Aligned_cols=282  Identities=16%  Similarity=0.148  Sum_probs=148.0

Q ss_pred             ccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchh
Q 006898          138 WFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDS  217 (626)
Q Consensus       138 ~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~  217 (626)
                      +...+..|++.|+.++.+++ +..++.+..++.+|+|++..||..|++.|..++...  +.+...+.+.|.+++..+++.
T Consensus        35 ~~k~K~Laaq~I~kffk~FP-~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~--~~~v~kvaDvL~QlL~tdd~~  111 (556)
T PF05918_consen   35 SPKEKRLAAQFIPKFFKHFP-DLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN--PEHVSKVADVLVQLLQTDDPV  111 (556)
T ss_dssp             -HHHHHHHHHHHHHHHCC-G-GGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-HHHHHHHHHHHTT---HH
T ss_pred             CHHHHHHHHHHHHHHHhhCh-hhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH--HHHHhHHHHHHHHHHhcccHH
Confidence            45678889999999999886 455677888899999999999999999999998853  457788999999999988877


Q ss_pred             HHHHHHHHHHHhhcccCchhhhhhhHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHhCCCccc------cchHHHHHHhc
Q 006898          218 VRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS--QDKSWRVRYMVANQLYELCEAVGPEPTR------MDLVPAYVRLL  289 (626)
Q Consensus       218 vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~--~d~~~~vR~~a~~~l~~l~~~~~~~~~~------~~l~~~l~~~l  289 (626)
                      .+...-.+|..+.+.-++..    +-.++....  ...+..+|..+.+.|..-...++.+...      +.+...+.+.+
T Consensus       112 E~~~v~~sL~~ll~~d~k~t----L~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL  187 (556)
T PF05918_consen  112 ELDAVKNSLMSLLKQDPKGT----LTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVL  187 (556)
T ss_dssp             HHHHHHHHHHHHHHH-HHHH----HHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhcCcHHH----HHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHH
Confidence            66666667766655433321    122222222  2345678998887775544444443322      34666667778


Q ss_pred             CCChHHHHHHHHHhHHHHHHh--hChHHHHHhhHHHHHHhcc-C-----CCHHH----HHHHHHHHHhhhhhhcHHHHHH
Q 006898          290 RDNEAEVRIAAAGKVTKFCRI--LNPELAIQHILPCVKELSS-D-----SSQHV----RSALASVIMGMAPLLGKDATIE  357 (626)
Q Consensus       290 ~d~~~~vr~~a~~~l~~l~~~--~~~~~~~~~l~~~l~~l~~-d-----~~~~v----r~~~~~~l~~l~~~~~~~~~~~  357 (626)
                      .|-..+-=.-.+..|..+-..  .......+.+++.+.+... |     .+...    ...+-.++..+........+..
T Consensus       188 ~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~  267 (556)
T PF05918_consen  188 QDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVN  267 (556)
T ss_dssp             TT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHH
T ss_pred             HhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHH
Confidence            774322111222222221110  1112233556666664432 1     22222    2222223333333323333444


Q ss_pred             hHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhc------CC----ChHHHHHHHHHHHHHHHh
Q 006898          358 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE------DR----HWRVRLAIIEYIPLLASQ  427 (626)
Q Consensus       358 ~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~------~~----~~~~r~~~~~~l~~l~~~  427 (626)
                      .+...++..+.+-.+..+...++.+++++...+... ...++|.+.+++.      +.    ++..-++.+.++..++..
T Consensus       268 y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k  346 (556)
T PF05918_consen  268 YMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLARK  346 (556)
T ss_dssp             HHHHHTCCCTT-----HHHHHHHHHHHHHTT----T-HHHHHHHHHHHHHTTS----------HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhhh
Confidence            444444445566567888899999999988887655 3556666655542      12    234444555555555543

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.18  E-value=0.0023  Score=62.48  Aligned_cols=281  Identities=14%  Similarity=0.077  Sum_probs=165.3

Q ss_pred             ccchhHHHhhHhHHhcCC-C-Ch-HHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCcc--chhhhHHHHHHHh-h
Q 006898          138 WFTARVSACGLFHIAYPS-A-PD-ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDL-T  211 (626)
Q Consensus       138 ~~~~r~~a~~~l~~~~~~-~-~~-~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~l-~  211 (626)
                      .+..|..-...++.+... . ++ ....+++..+..-..|++..+|..++..|++.+...+.+  .+.+.++..+... .
T Consensus       230 ~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~  309 (533)
T KOG2032|consen  230 KENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLY  309 (533)
T ss_pred             cccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHh
Confidence            355666655555554332 1 11 344556666666678999999999999999999886653  3344555555544 4


Q ss_pred             cCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHH---HHhcCCCCHHHHHHHHHHHHHHHHHhCCCc---cccchHHHH
Q 006898          212 QDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI---VNFSQDKSWRVRYMVANQLYELCEAVGPEP---TRMDLVPAY  285 (626)
Q Consensus       212 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l---~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~l~~~l  285 (626)
                      .+.+.+|...++.+|..+.+........+++++.-   ..+..|.+..+|.++...+|.++...|...   +.+++...+
T Consensus       310 D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~  389 (533)
T KOG2032|consen  310 DDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRL  389 (533)
T ss_pred             cCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhcc
Confidence            55577899999999998888777655666666654   557788999999999999999999887543   222222122


Q ss_pred             ---HHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCH-HHHHHHHHHHHhhhhhhcHHHHHHhHHH
Q 006898          286 ---VRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQ-HVRSALASVIMGMAPLLGKDATIEQLLP  361 (626)
Q Consensus       286 ---~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~-~vr~~~~~~l~~l~~~~~~~~~~~~l~~  361 (626)
                         +--+.|++|.+-.++-..+..    +++....+.+...+.+.+ |.+- +.+.---.+...+...+..  ..-.+..
T Consensus       390 ~~lllhl~d~~p~va~ACr~~~~~----c~p~l~rke~~~~~q~~l-d~~~~~~q~Fyn~~c~~L~~i~~d--~l~~~~t  462 (533)
T KOG2032|consen  390 APLLLHLQDPNPYVARACRSELRT----CYPNLVRKELYHLFQESL-DTDMARFQAFYNQWCIQLNHIHPD--ILMLLLT  462 (533)
T ss_pred             ccceeeeCCCChHHHHHHHHHHHh----cCchhHHHHHHHHHhhhh-HHhHHHHHHHHHHHHHHHhhhCHH--HHHHHHH
Confidence               223468888876555443333    233322233333333222 2211 1111111111112111110  1112223


Q ss_pred             HHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhH----HhhHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 006898          362 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAIVELAEDRHWRVRLAIIEYIPLLA  425 (626)
Q Consensus       362 ~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~----~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~  425 (626)
                      ....+++...+.||.++..--..+......+.-    ...+...+..+.+|+-+.++..+.++++.+.
T Consensus       463 ~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~  530 (533)
T KOG2032|consen  463 EDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLS  530 (533)
T ss_pred             hchhheecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence            334445556678888877666655544433221    2456677777888999999999888887654

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.18  E-value=0.00036  Score=72.27  Aligned_cols=207  Identities=20%  Similarity=0.245  Sum_probs=142.3

Q ss_pred             hcCCCCHHHHHHHHHHHHHHHHHhCCC--ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHH
Q 006898          249 FSQDKSWRVRYMVANQLYELCEAVGPE--PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKE  326 (626)
Q Consensus       249 ~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~  326 (626)
                      .+.|+...+|..+.+.+..+.+...+.  ...+.++..++..++|+++.|-..|++++..+++..+     +.++|.+.+
T Consensus       735 sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~-----e~il~dL~e  809 (982)
T KOG4653|consen  735 SLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP-----EDILPDLSE  809 (982)
T ss_pred             HhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc-----hhhHHHHHH
Confidence            456777888999999998888744222  3345789999999999999999999999999998633     445666554


Q ss_pred             -hccC---CCHHHHHHHHHHHHhhhhhhcHH--HHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhc---hhhHHhh
Q 006898          327 -LSSD---SSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLSQS  397 (626)
Q Consensus       327 -l~~d---~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~---~~~~~~~  397 (626)
                       ..+.   ....-|.-+.+++..+....|+-  .+.+.++..++.+.+|++...|..++.+++.+++...   .+++ .+
T Consensus       810 ~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~-~e  888 (982)
T KOG4653|consen  810 EYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFF-HE  888 (982)
T ss_pred             HHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHH-HH
Confidence             2221   11344555557777777666652  2455788888999999999999999999999987654   4544 34


Q ss_pred             HHHHHHHHh-cCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHH-----------H-hcCCchHHHHHHHHHHHHHH
Q 006898          398 LLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ-----------W-LQDKVYSIRDAAANNLKRLA  464 (626)
Q Consensus       398 i~~~l~~~~-~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~-----------~-l~d~~~~VR~~a~~~l~~l~  464 (626)
                      +...+..+. .|.+..+|.+|+..+..+.++.|..     ++|++-.           . -.+++..+|..|..|+..+-
T Consensus       889 v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~d-----lLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~  963 (982)
T KOG4653|consen  889 VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGED-----LLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQ  963 (982)
T ss_pred             HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchh-----hHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence            445554443 5778899999999999988877743     3333211           1 13344456666666665554


Q ss_pred             HH
Q 006898          465 EE  466 (626)
Q Consensus       465 ~~  466 (626)
                      ..
T Consensus       964 a~  965 (982)
T KOG4653|consen  964 AA  965 (982)
T ss_pred             HH
Confidence            44

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.17  E-value=0.00022  Score=72.14  Aligned_cols=185  Identities=19%  Similarity=0.165  Sum_probs=125.9

Q ss_pred             HHHHHHHHhhcCh----hhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCC---ChHHHHHHHHHHHHhcCCCCHHH
Q 006898          107 VESLCRIGSQMRE----SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSA---PDILKTELRSIYTQLCQDDMPMV  179 (626)
Q Consensus       107 ~~~l~~i~~~~~~----~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~---~~~~~~~l~~~l~~l~~d~~~~v  179 (626)
                      ++-+.++...++.    +++.+.+.-.+.+....++..||..+++++..+....   ++.....+..-+..-+.|..+.|
T Consensus        63 l~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~V  142 (892)
T KOG2025|consen   63 LSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNV  142 (892)
T ss_pred             HHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchH
Confidence            3344444444443    3344444555556666778889999999999988744   34567778888888889999999


Q ss_pred             HHHHHHhHHHHHHhhCccchhhhHHHHHHHhh-cCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHH
Q 006898          180 RRSAASNLGKFAATVEPAHLKTDIMSIFEDLT-QDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVR  258 (626)
Q Consensus       180 R~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR  258 (626)
                      |..|..+|..+-..-+++.  -.+...+..++ +|++++||.+++..+..          .+.-+|++.....|.+..+|
T Consensus       143 RiqAv~aLsrlQ~d~~dee--~~v~n~l~~liqnDpS~EVRRaaLsnI~v----------dnsTlp~IveRarDV~~anR  210 (892)
T KOG2025|consen  143 RIQAVLALSRLQGDPKDEE--CPVVNLLKDLIQNDPSDEVRRAALSNISV----------DNSTLPCIVERARDVSGANR  210 (892)
T ss_pred             HHHHHHHHHHHhcCCCCCc--ccHHHHHHHHHhcCCcHHHHHHHHHhhcc----------CcccchhHHHHhhhhhHHHH
Confidence            9999999999875433322  23445555444 67899999999887743          35567888888999999899


Q ss_pred             HHHHHHH-HHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHH
Q 006898          259 YMVANQL-YELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK  306 (626)
Q Consensus       259 ~~a~~~l-~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~  306 (626)
                      +.+.+-+ ..+ ....  .....-+-.+...+.|.+..|+.++..++..
T Consensus       211 rlvY~r~lpki-d~r~--lsi~krv~LlewgLnDRe~sVk~A~~d~il~  256 (892)
T KOG2025|consen  211 RLVYERCLPKI-DLRS--LSIDKRVLLLEWGLNDREFSVKGALVDAILS  256 (892)
T ss_pred             HHHHHHhhhhh-hhhh--hhHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence            8876543 333 1110  0112445556677889888999888877643

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=98.13  E-value=0.00079  Score=64.66  Aligned_cols=204  Identities=13%  Similarity=0.097  Sum_probs=135.7

Q ss_pred             HHhhcCCCHHHHHHHHHhhHHHHhh-hchhhH---HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC----hhhHHH
Q 006898          364 LSLLKDEFPDVRLNIISKLDQVNQV-IGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG----VGFFDD  435 (626)
Q Consensus       364 ~~~l~d~~~~vr~~a~~~L~~~~~~-~~~~~~---~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~----~~~~~~  435 (626)
                      +..+.|.....|.+++..+..+... +-.+.+   ...+++.+.+.++......+..++.+++-++-.+|    ...+.+
T Consensus        49 Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~  128 (309)
T PF05004_consen   49 IDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFE  128 (309)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHH
Confidence            3444566677777777776665432 222322   24567777777776666777778888888877765    334556


Q ss_pred             HHHHHHHHHhcCCch--HHHHHHHHHHHHHHHHhChHH-Hhh---hhHHHHHhh--h-cC---------CChHHHHHHHH
Q 006898          436 KLGALCMQWLQDKVY--SIRDAAANNLKRLAEEFGPEW-AMQ---HITPQVLEM--I-NN---------PHYLYRMTILR  497 (626)
Q Consensus       436 ~l~p~l~~~l~d~~~--~VR~~a~~~l~~l~~~~~~~~-~~~---~il~~l~~~--l-~~---------~~~~vR~~a~~  497 (626)
                      .+.|.+...+.|...  .+|.+++.+|+.++-..+.+. -..   ..+..+...  . .+         ++..+..+|+.
T Consensus       129 ~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~  208 (309)
T PF05004_consen  129 ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALS  208 (309)
T ss_pred             HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHH
Confidence            788889888887653  577888888888876544331 122   233322111  1 11         24679999999


Q ss_pred             HHHHhccccChH---HhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhcc---c---hhhhcccchHHhhhccCCCc
Q 006898          498 AISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---S---VSTFSVSPFSFMLYLNVNNF  568 (626)
Q Consensus       498 ~l~~i~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~---~---~~~~~i~~~l~~~l~~d~d~  568 (626)
                      +.+-++..++..   ...+..+|.|..++..++.+||.+|-.+|+-+.+....   +   ...+.+...|. .+..|+.+
T Consensus       209 aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~-~La~dS~K  287 (309)
T PF05004_consen  209 AWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLR-ELATDSSK  287 (309)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHH-HHHHhccC
Confidence            999988777763   34566889999999999999999999999998877643   1   22345666666 66666543

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=98.07  E-value=0.00026  Score=71.84  Aligned_cols=54  Identities=20%  Similarity=0.410  Sum_probs=23.3

Q ss_pred             cCCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCC------CCCchHHHHHHHHHH
Q 006898          485 NNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASK------DRVPNIKFNVAKVLQ  539 (626)
Q Consensus       485 ~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~------d~~~~vR~~a~~~l~  539 (626)
                      ++=....|...+..+..++.+++... ...++|.+..++.      +..++....-++|+-
T Consensus       278 ~~l~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL  337 (556)
T PF05918_consen  278 SDLPEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLLKKYMPSKKTEPKLQFSYVECLL  337 (556)
T ss_dssp             T-----HHHHHHHHHHHHHTT----T-HHHHHHHHHHHHHTTS----------HHHHHHHH
T ss_pred             hhCChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHHHhCCCCCCCCcccchHhhHHH
Confidence            33355678888999999988887643 3444454444432      233444444444443

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=98.06  E-value=0.0025  Score=66.03  Aligned_cols=222  Identities=15%  Similarity=0.146  Sum_probs=140.2

Q ss_pred             chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHH--Hhcc-----CCCHHHHHHHHHHHHhhhhhhcH
Q 006898          280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVK--ELSS-----DSSQHVRSALASVIMGMAPLLGK  352 (626)
Q Consensus       280 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~--~l~~-----d~~~~vr~~~~~~l~~l~~~~~~  352 (626)
                      +.++.++-...|.+.+|...|-..|.++...+....+.+.++....  ....     -.++.+|..+...+..-...   
T Consensus       237 ~~~~~~liAsad~~~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~A---  313 (501)
T PF13001_consen  237 ERFPPLLIASADSNSSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIA---  313 (501)
T ss_pred             hHHhheeeEEeCCcchHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHH---
Confidence            5566666666788889988888888888776666555555555554  1111     13567777766665543211   


Q ss_pred             HHHHHhHHHHHHHhhcCC--CHHHHHHHHHhh---HHHHhhhchhhH---HhhHHHHHHHHhc--------CCChHHHHH
Q 006898          353 DATIEQLLPIFLSLLKDE--FPDVRLNIISKL---DQVNQVIGIDLL---SQSLLPAIVELAE--------DRHWRVRLA  416 (626)
Q Consensus       353 ~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~L---~~~~~~~~~~~~---~~~i~~~l~~~~~--------~~~~~~r~~  416 (626)
                      -...+.++.++...+...  +..+|..++..+   .......++..+   ...+...+....+        ..+...|..
T Consensus       314 a~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~  393 (501)
T PF13001_consen  314 ATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSL  393 (501)
T ss_pred             HhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHH
Confidence            112345666777777766  677888888888   666666665543   1223333333342        235678999


Q ss_pred             HHHHHHHHHHhhChhhH-HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHH-----HhhhhHHHHH-hhhcCCCh
Q 006898          417 IIEYIPLLASQLGVGFF-DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW-----AMQHITPQVL-EMINNPHY  489 (626)
Q Consensus       417 ~~~~l~~l~~~~~~~~~-~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~-----~~~~il~~l~-~~l~~~~~  489 (626)
                      +.++++.+++....-+. .-.++..++..+.++..++|.+.-++|+.+...+....     .....+..+. ....+...
T Consensus       394 aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~  473 (501)
T PF13001_consen  394 AYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVR  473 (501)
T ss_pred             HHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhH
Confidence            99999999987654331 23466677777889999999999999999988775421     1112222222 23345567


Q ss_pred             HHHHHHHHHHHHhcc
Q 006898          490 LYRMTILRAISLLAP  504 (626)
Q Consensus       490 ~vR~~a~~~l~~i~~  504 (626)
                      .+|..|++....+..
T Consensus       474 ~~R~~avk~an~~fp  488 (501)
T PF13001_consen  474 SCRYAAVKYANACFP  488 (501)
T ss_pred             HHHHHHHHHHHHhCC
Confidence            788888888877654

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.05  E-value=0.0062  Score=56.20  Aligned_cols=303  Identities=13%  Similarity=0.163  Sum_probs=159.0

Q ss_pred             hhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc-------cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhh
Q 006898          239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP-------TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL  311 (626)
Q Consensus       239 ~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~-------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  311 (626)
                      .+.++|.+...+..++..|+..+++.++.+.+......       ....+++.++..+..++.+|..+|++++..++..-
T Consensus        80 apnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfp  159 (524)
T KOG4413|consen   80 APNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFP  159 (524)
T ss_pred             chhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcH
Confidence            34444444444444444444444444444443332111       12467788888888888899999999998886531


Q ss_pred             Ch-HH-HHHhhHH--HHHHhccCCCHHHHHHHHHHHHhhhhhhcH---HHHHHhHHHHHHHhhcC-CCHHHHHHHHHhhH
Q 006898          312 NP-EL-AIQHILP--CVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKD-EFPDVRLNIISKLD  383 (626)
Q Consensus       312 ~~-~~-~~~~l~~--~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~L~  383 (626)
                      .. +. +-..+..  .+.++....+.-+|.-..+.+..+.+.-+.   +....-++..+..-++- ++.-|+..+++-..
T Consensus       160 aaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvt  239 (524)
T KOG4413|consen  160 AALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVT  239 (524)
T ss_pred             HHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHH
Confidence            11 00 0001110  112222223344455555555554433221   11123356666665554 66778888777766


Q ss_pred             HHHhhh-chhhH-HhhHHHHHHHHhc--CCChHHHHHHHHHHHHHHHhhChhhHH--------HH---HHHHHHHHhcCC
Q 006898          384 QVNQVI-GIDLL-SQSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVGFFD--------DK---LGALCMQWLQDK  448 (626)
Q Consensus       384 ~~~~~~-~~~~~-~~~i~~~l~~~~~--~~~~~~r~~~~~~l~~l~~~~~~~~~~--------~~---l~p~l~~~l~d~  448 (626)
                      .++..- |.+++ .+.++..+.+++.  |.++.-+..++..++.+   +|...+.        +.   .+.-.+......
T Consensus       240 eLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkf---fgkeaimdvseeaicealiiaidgsfEmiEmn  316 (524)
T KOG4413|consen  240 ELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKF---FGKEAIMDVSEEAICEALIIAIDGSFEMIEMN  316 (524)
T ss_pred             HHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHH---hcchHHhhcCHHHHHHHHHHHHHhhHHhhhcC
Confidence            665432 33332 2346666666653  44444444344434333   3332221        11   122234455667


Q ss_pred             chHHHHHHHHHHHHHHHHhC-hHHHhhhhHHH---HHhhhcCCC-hHHHHHHHHHHHHhcccc--ChHHh----------
Q 006898          449 VYSIRDAAANNLKRLAEEFG-PEWAMQHITPQ---VLEMINNPH-YLYRMTILRAISLLAPVM--GSEIT----------  511 (626)
Q Consensus       449 ~~~VR~~a~~~l~~l~~~~~-~~~~~~~il~~---l~~~l~~~~-~~vR~~a~~~l~~i~~~~--~~~~~----------  511 (626)
                      ++....+|..++|.+..... .+.....--|.   +.....|.| ..-...+++++..++...  .++..          
T Consensus       317 DpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlr  396 (524)
T KOG4413|consen  317 DPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLR  396 (524)
T ss_pred             CchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHH
Confidence            77889999999999876542 23222222222   222233433 345677788888886432  11110          


Q ss_pred             ---hh--------cHHHHHhhhCCCCCchHHHHHHHHHHHHHhh
Q 006898          512 ---CS--------RLLPVVINASKDRVPNIKFNVAKVLQSLIPI  544 (626)
Q Consensus       512 ---~~--------~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~  544 (626)
                         .+        .=+..+...++.+.+++|.++.+++..+...
T Consensus       397 clifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaq  440 (524)
T KOG4413|consen  397 CLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQ  440 (524)
T ss_pred             HHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcC
Confidence               00        1234566677899999999999999988754

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=98.05  E-value=0.00039  Score=67.13  Aligned_cols=196  Identities=18%  Similarity=0.205  Sum_probs=119.4

Q ss_pred             HHHHHHHHhcCCccchhHHHhhHhHHh-cCC-CC--hHHHHHHHHHHHHhcCC-CCHHHHHHHHHhHHHHHHhhCccc--
Q 006898          126 YIPLVKRLAAGEWFTARVSACGLFHIA-YPS-AP--DILKTELRSIYTQLCQD-DMPMVRRSAASNLGKFAATVEPAH--  198 (626)
Q Consensus       126 l~~~l~~l~~~~~~~~r~~a~~~l~~~-~~~-~~--~~~~~~l~~~l~~l~~d-~~~~vR~~a~~~l~~l~~~~~~~~--  198 (626)
                      +...+.++.+++....|..|..-+..+ +.. ++  +++..+|+..+++.++| .+...|+.|.+.|..++..-+...  
T Consensus       288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~D  367 (516)
T KOG2956|consen  288 VADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFD  367 (516)
T ss_pred             HHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhc
Confidence            444455555555555666666533333 322 11  24566777777887877 778888889999998887655422  


Q ss_pred             hhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcc-
Q 006898          199 LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT-  277 (626)
Q Consensus       199 ~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~-  277 (626)
                      .....+--+++...|..++|-..|.+.+..+.....+......+.|.+..    .+...--.+++.+..+.+.+..+.. 
T Consensus       368 stE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~EeL~  443 (516)
T KOG2956|consen  368 STEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSAEELL  443 (516)
T ss_pred             hHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHHHHH
Confidence            12233444555667776666555555544444333333333444444433    2333334555677777776655432 


Q ss_pred             --ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhcc
Q 006898          278 --RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS  329 (626)
Q Consensus       278 --~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~  329 (626)
                        ..++.|.+++.....+..||+.|+.+|..+...+|.+.    +.|++.++..
T Consensus       444 ~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~----mePhL~~Lt~  493 (516)
T KOG2956|consen  444 NLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEE----MEPHLEQLTS  493 (516)
T ss_pred             HhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHh----hhhHhhhccH
Confidence              35788888888888888899999999988888888654    3566665543

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.02  E-value=0.026  Score=58.56  Aligned_cols=192  Identities=14%  Similarity=0.139  Sum_probs=120.5

Q ss_pred             hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHhC--h
Q 006898          393 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDK-VYSIRDAAANNLKRLAEEFG--P  469 (626)
Q Consensus       393 ~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~-~~~VR~~a~~~l~~l~~~~~--~  469 (626)
                      ++.+.++|.+. .-.+....+|...+-.++.+...-.+......+-..+.++++|. +..||.+++.++..+++..+  +
T Consensus       484 Wl~~~llpEl~-~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~  562 (978)
T KOG1993|consen  484 WLQEALLPELA-NDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSE  562 (978)
T ss_pred             HHHHhhCHHhh-hcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCCh
Confidence            44556666665 11122344677777778887765444455556666788889998 77899999999999988643  2


Q ss_pred             HHH---hhhhHHHHHhhhcC-CChHHHHHHHHHHHHhccccChH--H---hhhcHHHHHhhhCCCCCchHHHHHHHHHHH
Q 006898          470 EWA---MQHITPQVLEMINN-PHYLYRMTILRAISLLAPVMGSE--I---TCSRLLPVVINASKDRVPNIKFNVAKVLQS  540 (626)
Q Consensus       470 ~~~---~~~il~~l~~~l~~-~~~~vR~~a~~~l~~i~~~~~~~--~---~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~  540 (626)
                      +.+   .+.+...+.+++.. ...+.|...+..++.++.+.+.-  +   ..-.++|.+..-.+ ..+-.|.+...++.+
T Consensus       563 dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~-~e~lLr~alL~~L~~  641 (978)
T KOG1993|consen  563 DSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESE-EEPLLRCALLATLRN  641 (978)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc-cCcHHHHHHHHHHHH
Confidence            211   13333333344433 46678888898888887765532  1   22345566665544 667899999999999


Q ss_pred             HHhhhccc--hhhhcccchHHhhhccCCCcccccccccCchhHHHHHHHHHHHHHhhc
Q 006898          541 LIPIVDQS--VSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCHRWWRK  596 (626)
Q Consensus       541 i~~~~~~~--~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~~~~~~  596 (626)
                      +...+|..  .+.+.+.|.+. ...+-+.++-..         ....+++-....++.
T Consensus       642 lV~alg~qS~~~~~fL~pVIe-l~~D~~sP~hv~---------L~EDgmeLW~~~L~n  689 (978)
T KOG1993|consen  642 LVNALGAQSFEFYPFLYPVIE-LSTDPSSPEHVY---------LLEDGMELWLTTLMN  689 (978)
T ss_pred             HHHHhccCCccchHHHHHHHH-HhcCCCCCceee---------hhhhHHHHHHHHHhc
Confidence            99999875  44566777777 433333444444         444555555444433

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.99  E-value=1e-05  Score=55.41  Aligned_cols=53  Identities=23%  Similarity=0.156  Sum_probs=43.5

Q ss_pred             hHHHHHHHHHHHHhccccCh--HHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHH
Q 006898          489 YLYRMTILRAISLLAPVMGS--EITCSRLLPVVINASKDRVPNIKFNVAKVLQSL  541 (626)
Q Consensus       489 ~~vR~~a~~~l~~i~~~~~~--~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i  541 (626)
                      |.+|..++.+++.+++..+.  +.+.+.++|.|..+++|+++.||.+|+++|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            57899999999987765543  346788999999999999999999999999864

...

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]

Probab=97.96  E-value=0.042  Score=60.11  Aligned_cols=149  Identities=16%  Similarity=0.065  Sum_probs=103.3

Q ss_pred             hcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChh----hHHHhHHHHHHH--------HhcCC-ccchhHHHhhHhHH
Q 006898           85 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES----DLVDWYIPLVKR--------LAAGE-WFTARVSACGLFHI  151 (626)
Q Consensus        85 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~----~~~~~l~~~l~~--------l~~~~-~~~~r~~a~~~l~~  151 (626)
                      +.++..|.+..-++.+++|+.+.-++..+.+.-+..    .+...+.-++--        ...+. -..+|..+++.++.
T Consensus        76 ~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~  155 (1549)
T KOG0392|consen   76 LSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGA  155 (1549)
T ss_pred             HHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHH
Confidence            334444444455789999999999998887654432    222221111111        11211 24689999999999


Q ss_pred             hcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc--cchhhhHHHHHHHhhcCCchhHHHHHHHHHHHh
Q 006898          152 AYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAAL  229 (626)
Q Consensus       152 ~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l  229 (626)
                      +..+.......+.++++.+++.-+.|++|...+..+.........  ......+++.+...+.|.++.||..|...+..+
T Consensus       156 ~l~~~~~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~  235 (1549)
T KOG0392|consen  156 YLKHMDESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPA  235 (1549)
T ss_pred             HHHhhhhHhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHhhhh
Confidence            999988888888999999999888999999988888776653222  233456778888899999999998888877665


Q ss_pred             hccc
Q 006898          230 GKLL  233 (626)
Q Consensus       230 ~~~~  233 (626)
                      ....
T Consensus       236 ~s~~  239 (1549)
T KOG0392|consen  236 PSIQ  239 (1549)
T ss_pred             hHHH
Confidence            5444

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=97.95  E-value=0.00031  Score=73.32  Aligned_cols=147  Identities=14%  Similarity=0.091  Sum_probs=116.7

Q ss_pred             hhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhh
Q 006898          119 ESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATV  194 (626)
Q Consensus       119 ~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~----~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~  194 (626)
                      ++.+...+.|.+.+........+|..-...++.+..+.+.+    ..+.++|.+++.++-++..||-...+.+..+....
T Consensus       861 kQRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~  940 (1030)
T KOG1967|consen  861 KQRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTES  940 (1030)
T ss_pred             HHHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhc
Confidence            34566678888887777555667778888888888888875    45789999999999999999999999888877655


Q ss_pred             Cc--cchhhhHHHHHHHhhcCCc---hhHHHHHHHHHHHhhcccCc---hhhhhhhHHHHHHhcCCCCHHHHHHHHHHH
Q 006898          195 EP--AHLKTDIMSIFEDLTQDDQ---DSVRLLAVEGCAALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQL  265 (626)
Q Consensus       195 ~~--~~~~~~ll~~l~~l~~d~~---~~vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l  265 (626)
                      +.  ....+.++|.+..+-.|.+   ..||..|+++|..+.+..+.   -.+.+.++..+.+.+.|+-..||..|+.+=
T Consensus       941 ~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen  941 ETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred             cccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence            54  4556778999998888776   57999999999999987776   346677888888888998888998887653

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.95  E-value=0.0018  Score=62.23  Aligned_cols=58  Identities=19%  Similarity=0.202  Sum_probs=44.5

Q ss_pred             CHHHHHHHHHHHHhhhhhhcHHH---HHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhh
Q 006898          332 SQHVRSALASVIMGMAPLLGKDA---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI  389 (626)
Q Consensus       332 ~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~  389 (626)
                      +..+..++++.|+.+....+...   ..+..+|.+..+|...+.+||.+|-++++-+.+..
T Consensus       199 ~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~  259 (309)
T PF05004_consen  199 DAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELA  259 (309)
T ss_pred             ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence            46788888888888887776532   23456788888898889999999999888776543

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=97.94  E-value=0.0012  Score=63.84  Aligned_cols=188  Identities=15%  Similarity=0.219  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc---cchhhhHHHHHHHhhcC-CchhHHHHHHHHHHHhhcccCch
Q 006898          161 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEPQ  236 (626)
Q Consensus       161 ~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~  236 (626)
                      .+.+...+.++-+++...-|+.|...|-.+...-+-   +.+..+|+..+.+.++| .++..|+.|++.|..+++.-+..
T Consensus       285 ~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~  364 (516)
T KOG2956|consen  285 SALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR  364 (516)
T ss_pred             hHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh
Confidence            345566666666666677788777766665543221   22234577778888888 67889999999999998776542


Q ss_pred             --hhhhhhHHHHHHhcCCCCHHHHHHHHHH-HHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCh
Q 006898          237 --DCVAHILPVIVNFSQDKSWRVRYMVANQ-LYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP  313 (626)
Q Consensus       237 --~~~~~i~~~l~~~~~d~~~~vR~~a~~~-l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  313 (626)
                        ......+.-+.....|....|-..|.+. +..++.+.+... ...+.|.++.    .+...-..+++.+.++.+.+..
T Consensus       365 l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~-I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~  439 (516)
T KOG2956|consen  365 LFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC-IVNISPLILT----ADEPRAVAVIKMLTKLFERLSA  439 (516)
T ss_pred             hhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH-HHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCH
Confidence              2233344444555566666665555554 444555444211 2233444333    3445556777888888888887


Q ss_pred             HH---HHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHH
Q 006898          314 EL---AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD  353 (626)
Q Consensus       314 ~~---~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~  353 (626)
                      +.   +...+.|.+.+..++.+..||.++.-++..+....|.+
T Consensus       440 EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~  482 (516)
T KOG2956|consen  440 EELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGME  482 (516)
T ss_pred             HHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHH
Confidence            74   34677888888888888888888888888888777744

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=97.86  E-value=0.04  Score=55.27  Aligned_cols=167  Identities=14%  Similarity=0.044  Sum_probs=107.0

Q ss_pred             cHHHHHHHhcCccHHHHHHHHhhHHHHHHhhCh--Hhhhhhhcccccc-ccCCchHHHHHHHHHHhccccccCCcchhhc
Q 006898           10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGE--ERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHV   86 (626)
Q Consensus        10 ~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~--~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~   86 (626)
                      .+..++-+..|.|..+|..+++.|..+....++  +.....|+.-+.. +.|..+.||..|..+|..+-..-+.++.  .
T Consensus        92 ~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen--~  169 (885)
T COG5218          92 TFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN--R  169 (885)
T ss_pred             HHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH--H
Confidence            345677778899999999999999998777765  4444444444444 7788999999999999887654444332  2


Q ss_pred             chHHHhh-hhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccc-hhHHHhhHhHHhcCCCChHHHHHH
Q 006898           87 LLPPLET-LCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFT-ARVSACGLFHIAYPSAPDILKTEL  164 (626)
Q Consensus        87 l~~~l~~-l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~-~r~~a~~~l~~~~~~~~~~~~~~l  164 (626)
                      +..++.. +..||+.+||..|...+..=-          --.|.+.+-+.|-+.. .|..-.+++..+.........+.+
T Consensus       170 ~~n~l~~~vqnDPS~EVRr~allni~vdn----------sT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri  239 (885)
T COG5218         170 IVNLLKDIVQNDPSDEVRRLALLNISVDN----------STYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRI  239 (885)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHeeeCC----------CcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhcccccee
Confidence            2333333 446889999998775543111          1224444444443322 333445555555444433344444


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHhHHH
Q 006898          165 RSIYTQLCQDDMPMVRRSAASNLGK  189 (626)
Q Consensus       165 ~~~l~~l~~d~~~~vR~~a~~~l~~  189 (626)
                      + ++...+.|.+..||.++..++..
T Consensus       240 ~-l~ewgl~dRe~sv~~a~~d~ia~  263 (885)
T COG5218         240 L-LMEWGLLDREFSVKGALVDAIAS  263 (885)
T ss_pred             h-hhhhcchhhhhhHHHHHHHHHHH
Confidence            4 56667888889999998888765

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.83  E-value=0.079  Score=57.80  Aligned_cols=150  Identities=15%  Similarity=0.161  Sum_probs=113.5

Q ss_pred             hcHHHHHHhHHHHHHHhhcC----CCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhc-CCChHHHHHHHHHHHHH
Q 006898          350 LGKDATIEQLLPIFLSLLKD----EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLL  424 (626)
Q Consensus       350 ~~~~~~~~~l~~~l~~~l~d----~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~r~~~~~~l~~l  424 (626)
                      .|+......+.|++....+.    .+|+++.+|.-+|+.++-. +.+ +.+.-+|.+...++ ++++++|.-++-+++-+
T Consensus       911 ~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i-Sa~-fces~l~llftimeksp~p~IRsN~VvalgDl  988 (1251)
T KOG0414|consen  911 YGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI-SAE-FCESHLPLLFTIMEKSPSPRIRSNLVVALGDL  988 (1251)
T ss_pred             cChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh-hHH-HHHHHHHHHHHHHhcCCCceeeecchheccch
Confidence            45566677888988888753    4699999999999998653 222 33566788888776 78999999999888888


Q ss_pred             HHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhcc
Q 006898          425 ASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAP  504 (626)
Q Consensus       425 ~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~  504 (626)
                      +-.++  .+.+..-+.++..++|.+..||..|..++..++-.--  .-....++.+..++.||+..+|..|-..+..+..
T Consensus       989 av~fp--nlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndm--iKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen  989 AVRFP--NLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDM--IKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred             hhhcc--cccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhh--hHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence            75443  2334567788999999999999999999988875411  1123356777788999999999999888777765


Q ss_pred             c
Q 006898          505 V  505 (626)
Q Consensus       505 ~  505 (626)
                      .
T Consensus      1065 k 1065 (1251)
T KOG0414|consen 1065 K 1065 (1251)
T ss_pred             c
Confidence            3

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=97.79  E-value=0.0074  Score=56.34  Aligned_cols=221  Identities=11%  Similarity=0.042  Sum_probs=126.9

Q ss_pred             HhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHh----HHHHHHHHhcCCccchhHHHhhHhHHhc--CCCChHHHHHH
Q 006898           91 LETLCTVEETCVRDKAVESLCRIGSQMRESDLVDW----YIPLVKRLAAGEWFTARVSACGLFHIAY--PSAPDILKTEL  164 (626)
Q Consensus        91 l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~----l~~~l~~l~~~~~~~~r~~a~~~l~~~~--~~~~~~~~~~l  164 (626)
                      +...++++++.+|..|...|..+.+.++++.+...    +..++..-+. +...+... ...+..+.  ..++.+....+
T Consensus         4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~-D~~~~~~~-l~gl~~L~~~~~~~~~~~~~i   81 (262)
T PF14500_consen    4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD-DHACVQPA-LKGLLALVKMKNFSPESAVKI   81 (262)
T ss_pred             hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc-cHhhHHHH-HHHHHHHHhCcCCChhhHHHH
Confidence            34455678999999999999999999997544332    3444443332 33333333 44444443  33455555666


Q ss_pred             HHHHHHhcC--CCCHHHHHHHHHhHHHHHHhhCc--cchhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhhcccCchhhh
Q 006898          165 RSIYTQLCQ--DDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQDCV  239 (626)
Q Consensus       165 ~~~l~~l~~--d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~~~~  239 (626)
                      +..+.+-.+  .-....|..+.+.+..+.+....  ....+.++..+.+.++.+ ||.--..+.+.+..+...++...+.
T Consensus        82 ~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~  161 (262)
T PF14500_consen   82 LRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFA  161 (262)
T ss_pred             HHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhH
Confidence            666555333  33467899999999888876543  122345666666666555 6666677777777777666654444


Q ss_pred             hhhHHHHHHhc--------CCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhh
Q 006898          240 AHILPVIVNFS--------QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL  311 (626)
Q Consensus       240 ~~i~~~l~~~~--------~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  311 (626)
                      +.+...+.-..        +|+..-.|......+.....  ....+.+..+|.+++-+.++.+.++..++++|...+...
T Consensus       162 e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~--s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y  239 (262)
T PF14500_consen  162 EDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS--STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENY  239 (262)
T ss_pred             HHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc--CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHC
Confidence            44444332211        23322223333222221111  112223566777777777777777777777777777766


Q ss_pred             ChHH
Q 006898          312 NPEL  315 (626)
Q Consensus       312 ~~~~  315 (626)
                      |...
T Consensus       240 ~~~~  243 (262)
T PF14500_consen  240 GADS  243 (262)
T ss_pred             CHHH
Confidence            6553

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.76  E-value=9.6e-05  Score=50.52  Aligned_cols=53  Identities=26%  Similarity=0.308  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHhhhhhhcH--HHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHH
Q 006898          333 QHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV  385 (626)
Q Consensus       333 ~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~  385 (626)
                      |.||.+++.+++.++...+.  ..+.+.++|.+..+++|+++.||.+|+.+|+.+
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            68899999999987755443  345678889999999999999999999988753

...

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=97.75  E-value=0.0012  Score=65.17  Aligned_cols=155  Identities=20%  Similarity=0.181  Sum_probs=87.6

Q ss_pred             HHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHH-hhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHH
Q 006898          166 SIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFED-LTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP  244 (626)
Q Consensus       166 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~-l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~  244 (626)
                      ..+.+++.|.++..|.+.+-+++.--..-++..    ++..++. ..+|.++.||.+|+-+++-++-  ..   .+.+..
T Consensus       519 d~I~ell~d~ds~lRy~G~fs~alAy~GTgn~~----vv~~lLh~avsD~nDDVrRAAViAlGfvc~--~D---~~~lv~  589 (926)
T COG5116         519 DYINELLYDKDSILRYNGVFSLALAYVGTGNLG----VVSTLLHYAVSDGNDDVRRAAVIALGFVCC--DD---RDLLVG  589 (926)
T ss_pred             HHHHHHhcCchHHhhhccHHHHHHHHhcCCcch----hHhhhheeecccCchHHHHHHHHheeeeEe--cC---cchhhH
Confidence            355566677777777777666654322223322    2222333 3677777788777777765441  11   122333


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHH--HHhhHH
Q 006898          245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA--IQHILP  322 (626)
Q Consensus       245 ~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~  322 (626)
                      .+.-+..+-+++||...+-++|-.+..-|.    +....++..++.|...-||++|+-+++-+.....++..  ...+..
T Consensus       590 tvelLs~shN~hVR~g~AvaLGiacag~G~----~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k  665 (926)
T COG5116         590 TVELLSESHNFHVRAGVAVALGIACAGTGD----KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIK  665 (926)
T ss_pred             HHHHhhhccchhhhhhhHHHhhhhhcCCcc----HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHH
Confidence            344445556777887777777766655552    34456666677777777888777777766655443311  133444


Q ss_pred             HHHHhccCCCH
Q 006898          323 CVKELSSDSSQ  333 (626)
Q Consensus       323 ~l~~l~~d~~~  333 (626)
                      .+.+.+.|++.
T Consensus       666 ~f~~vI~~Khe  676 (926)
T COG5116         666 KFNRVIVDKHE  676 (926)
T ss_pred             HHHHHHhhhhH
Confidence            45555555443

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=97.74  E-value=0.013  Score=60.87  Aligned_cols=184  Identities=15%  Similarity=0.158  Sum_probs=122.8

Q ss_pred             hHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhc--C---------CChHHHHHHHHHHHHHHH
Q 006898          358 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE--D---------RHWRVRLAIIEYIPLLAS  426 (626)
Q Consensus       358 ~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~--~---------~~~~~r~~~~~~l~~l~~  426 (626)
                      ..++.++-.-.|...+|...|-..|.++...+...    .++..|..+..  .         -++.+|...+..+..=..
T Consensus       237 ~~~~~~liAsad~~~~V~~~ae~~LKr~~~~~ed~----~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~  312 (501)
T PF13001_consen  237 ERFPPLLIASADSNSSVSDRAEDLLKRLSVSLEDP----DLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI  312 (501)
T ss_pred             hHHhheeeEEeCCcchHHHHHHHHHhhcCCCCCCH----HHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH
Confidence            34444444557888888888888888776555443    34444444443  1         356777777666655221


Q ss_pred             hhChhhHHHHHHHHHHHHhcCC--chHHHHHHHHHH---HHHHHHhChHH---HhhhhHHHHHhhhc--------CCChH
Q 006898          427 QLGVGFFDDKLGALCMQWLQDK--VYSIRDAAANNL---KRLAEEFGPEW---AMQHITPQVLEMIN--------NPHYL  490 (626)
Q Consensus       427 ~~~~~~~~~~l~p~l~~~l~d~--~~~VR~~a~~~l---~~l~~~~~~~~---~~~~il~~l~~~l~--------~~~~~  490 (626)
                         .....+.++.++...+.++  +..+|..+...+   .......+...   ..+.++..+...+.        ..+..
T Consensus       313 ---Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~  389 (501)
T PF13001_consen  313 ---AATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIE  389 (501)
T ss_pred             ---HHhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHH
Confidence               1112245666777777777  678888888888   77777766652   22444444444452        23677


Q ss_pred             HHHHHHHHHHHhccccChHHh-hhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc
Q 006898          491 YRMTILRAISLLAPVMGSEIT-CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS  548 (626)
Q Consensus       491 vR~~a~~~l~~i~~~~~~~~~-~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~  548 (626)
                      .|..+.+++|.+++..+.-+. .-.++..|...+.++.+++|.+.-++|..+...+...
T Consensus       390 lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~  448 (501)
T PF13001_consen  390 LRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDL  448 (501)
T ss_pred             HHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999987665431 2346667777779999999999999999999988653

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=97.71  E-value=0.093  Score=61.78  Aligned_cols=273  Identities=12%  Similarity=0.151  Sum_probs=160.5

Q ss_pred             chhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc-h-----hhhhhhHHHHHH-hcCCCCHHHHHHHHHHHHHHHH
Q 006898          198 HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-Q-----DCVAHILPVIVN-FSQDKSWRVRYMVANQLYELCE  270 (626)
Q Consensus       198 ~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~-----~~~~~i~~~l~~-~~~d~~~~vR~~a~~~l~~l~~  270 (626)
                      ..|..+-+++.....+++..++..|+..|..++-.+-+ +     .+.+.++..+.. +....+..+|...++++..+..
T Consensus      1133 ~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~ 1212 (1780)
T PLN03076       1133 SIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVL 1212 (1780)
T ss_pred             hHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence            34555666677765555677889999988887754433 2     233444444444 4456677999999999998887


Q ss_pred             HhCCCc--cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCh------HHHHHhhHHHHHHhccCC-CHHHHHHHHH
Q 006898          271 AVGPEP--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP------ELAIQHILPCVKELSSDS-SQHVRSALAS  341 (626)
Q Consensus       271 ~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~l~~d~-~~~vr~~~~~  341 (626)
                      ..+...  .-..++.++-....++++.+-..|.+.+..+....-.      ......++..+.++.+.. +..+--.++.
T Consensus      1213 s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~ 1292 (1780)
T PLN03076       1213 SRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIA 1292 (1780)
T ss_pred             HHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHH
Confidence            665432  2245667776667788888888888888877653211      122245556666655432 2333333444


Q ss_pred             HHHhhhhhh-----------------------------------cHHHHHHhHHHHHHHh---hcCCCHHHHHHHHHhhH
Q 006898          342 VIMGMAPLL-----------------------------------GKDATIEQLLPIFLSL---LKDEFPDVRLNIISKLD  383 (626)
Q Consensus       342 ~l~~l~~~~-----------------------------------~~~~~~~~l~~~l~~~---l~d~~~~vr~~a~~~L~  383 (626)
                      .+..++..+                                   +.+......+|.+..+   ..|+.++||..|+..|-
T Consensus      1293 lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF 1372 (1780)
T PLN03076       1293 FLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLF 1372 (1780)
T ss_pred             HHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            444332111                                   0111123455665544   56899999999999988


Q ss_pred             HHHhhhchh----hH----HhhHHHHHHHHhc----------------------CCChHHHHHHHHHHHHHHHhhChhh-
Q 006898          384 QVNQVIGID----LL----SQSLLPAIVELAE----------------------DRHWRVRLAIIEYIPLLASQLGVGF-  432 (626)
Q Consensus       384 ~~~~~~~~~----~~----~~~i~~~l~~~~~----------------------~~~~~~r~~~~~~l~~l~~~~~~~~-  432 (626)
                      .+....|..    .+    ...++|.+..+-.                      +.+......+..++..+...+..-+ 
T Consensus      1373 ~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd 1452 (1780)
T PLN03076       1373 DTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYP 1452 (1780)
T ss_pred             HHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            877766643    22    2234444333210                      0011234555555555555443221 


Q ss_pred             ----HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChH
Q 006898          433 ----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE  470 (626)
Q Consensus       433 ----~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~  470 (626)
                          ..+.++..+..+...++..+-..+..|+..++...|..
T Consensus      1453 ~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~ 1494 (1780)
T PLN03076       1453 TVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHL 1494 (1780)
T ss_pred             HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhcc
Confidence                22445555666667778888888999999998876653

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.66  E-value=0.054  Score=55.56  Aligned_cols=143  Identities=22%  Similarity=0.203  Sum_probs=62.1

Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcccc-------chHHHHHHhcCCChHHHHHHHHHhHHHHHHhh---
Q 006898          242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM-------DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL---  311 (626)
Q Consensus       242 i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~-------~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---  311 (626)
                      .-|.+.+.+.-++..||..|+..+-.+....+.+...+       .=...+..+++|+-|.||..|+..+.++...+   
T Consensus       175 ~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~  254 (1005)
T KOG1949|consen  175 YKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEM  254 (1005)
T ss_pred             HhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence            34555555666666666666666655544444332111       12233344555555555555555555444322   


Q ss_pred             -ChHHHHHhhHHH-HHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHH
Q 006898          312 -NPELAIQHILPC-VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV  385 (626)
Q Consensus       312 -~~~~~~~~l~~~-l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~  385 (626)
                       ++..+ ..++.. +-.+..|....||.+..+.+..+...-..-...++++|.+-..+.|....||.++..-|..+
T Consensus       255 iP~~i~-~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i  329 (1005)
T KOG1949|consen  255 IPPTIL-IDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI  329 (1005)
T ss_pred             cCHHHH-HHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence             11111 112111 11233344444454444444444322212222334444444444444444444444444443

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.66  E-value=0.015  Score=65.41  Aligned_cols=290  Identities=15%  Similarity=0.109  Sum_probs=158.4

Q ss_pred             hhcCcchHHHHHHHHHHHHHHhhcChh---------hHHHhHHHHHHHHhcC--CccchhHHHhhHhHHhc-----C-CC
Q 006898           94 LCTVEETCVRDKAVESLCRIGSQMRES---------DLVDWYIPLVKRLAAG--EWFTARVSACGLFHIAY-----P-SA  156 (626)
Q Consensus        94 l~~~~~~~vR~~a~~~l~~i~~~~~~~---------~~~~~l~~~l~~l~~~--~~~~~r~~a~~~l~~~~-----~-~~  156 (626)
                      ++.+++..||-..+-|+..|.+-+.|+         ++...++..+..+..-  +.+..+..-.+-+..+.     . .-
T Consensus        58 ~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d  137 (1266)
T KOG1525|consen   58 LLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLED  137 (1266)
T ss_pred             HhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccc
Confidence            456788889998888888888877652         1222233333333322  23334433333332222     1 11


Q ss_pred             ChHHHHHHHHHHHHhcCCCCHH-HHHHHHHhHHHHHHhhCccchhhhHHHHHHHhh----cCCchhHHHHHHHHHHHhhc
Q 006898          157 PDILKTELRSIYTQLCQDDMPM-VRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT----QDDQDSVRLLAVEGCAALGK  231 (626)
Q Consensus       157 ~~~~~~~l~~~l~~l~~d~~~~-vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~----~d~~~~vr~~a~~~l~~l~~  231 (626)
                      .++...++...+..+..++.+. |=. ....+..+....  +....+++..+..-+    .|....-+..|-..+...+.
T Consensus       138 ~~e~~~~~f~~f~d~~~~~~~~~v~~-~~~i~~~li~e~--d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~  214 (1266)
T KOG1525|consen  138 CQELVHELFRTFFDLARKGHPKKVFN-MLDIAIMLITEE--DTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCAD  214 (1266)
T ss_pred             hHHHHHHHHHHHHHHHhccccHHHHH-HHHHHHHHHHhh--ccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhh
Confidence            2356677777777777555433 322 222222222211  233344444433322    23334444444444444433


Q ss_pred             ccCch-----------------------------------hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc
Q 006898          232 LLEPQ-----------------------------------DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP  276 (626)
Q Consensus       232 ~~~~~-----------------------------------~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~  276 (626)
                      .....                                   .....++|.+..-+...+..+|..|...+|.+....+...
T Consensus       215 ~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l  294 (1266)
T KOG1525|consen  215 NLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQL  294 (1266)
T ss_pred             hhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhh
Confidence            32210                                   1122356777666777788899999999988876544433


Q ss_pred             c--ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHH
Q 006898          277 T--RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA  354 (626)
Q Consensus       277 ~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~  354 (626)
                      .  ...+...++..+.|..++||..+++....+.-..+...-...+.-.+.....|.+.++|..++-...... .+.-..
T Consensus       295 ~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~-~~~l~~  373 (1266)
T KOG1525|consen  295 SETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVM-KFKLVY  373 (1266)
T ss_pred             cccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehh-Hhhhhh
Confidence            3  4567888888889999999999998887776542222111223333444445555555543321100000 001111


Q ss_pred             HHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhh
Q 006898          355 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV  388 (626)
Q Consensus       355 ~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~  388 (626)
                      ... ++..+...+.|....||..|+..|..+.+.
T Consensus       374 ~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~  406 (1266)
T KOG1525|consen  374 IPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN  406 (1266)
T ss_pred             hHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            222 666677778899999999999999998873

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=97.66  E-value=0.1  Score=54.11  Aligned_cols=143  Identities=9%  Similarity=0.071  Sum_probs=101.5

Q ss_pred             hhHHHHHHHHhc-----C---CChHHHHHHHHHHHHHHHhhC-----hhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 006898          396 QSLLPAIVELAE-----D---RHWRVRLAIIEYIPLLASQLG-----VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKR  462 (626)
Q Consensus       396 ~~i~~~l~~~~~-----~---~~~~~r~~~~~~l~~l~~~~~-----~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~  462 (626)
                      +.+++.+...++     +   ++.+-...++..++.+.....     ...+...+++.+...++++..-+|..|+..+..
T Consensus       407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~  486 (970)
T COG5656         407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST  486 (970)
T ss_pred             hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence            667887777762     1   356777778888888877332     123345677888888899999999999999999


Q ss_pred             HHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChH----HhhhcHHHHHhhhCCCCCchHHHHHHHHH
Q 006898          463 LAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE----ITCSRLLPVVINASKDRVPNIKFNVAKVL  538 (626)
Q Consensus       463 l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~----~~~~~~l~~l~~~l~d~~~~vR~~a~~~l  538 (626)
                      +...+........+.....+++++..-.++..|+-|+.-+...-...    ...+..+..|+.+.++-+.++-....+.+
T Consensus       487 ~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vMe~f  566 (970)
T COG5656         487 IEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVMESF  566 (970)
T ss_pred             HHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHHHHH
Confidence            97777666566677777788888888889999999999887543221    13345566666777776666655555444

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.66  E-value=0.032  Score=62.80  Aligned_cols=146  Identities=13%  Similarity=0.038  Sum_probs=97.1

Q ss_pred             hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhH--HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHh
Q 006898          396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM  473 (626)
Q Consensus       396 ~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~--~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~  473 (626)
                      -.++|.|..-+...+..+|..++..++.+....+...+  .+.+...++..+.|...+||..+++....+..........
T Consensus       258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~  337 (1266)
T KOG1525|consen  258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKA  337 (1266)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhH
Confidence            45788888878888999999999999998876554443  3456777888899999999999999988887653221111


Q ss_pred             hhhHHHHHhhhcCCChHHHHHHHHHHHHhcc-ccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhh
Q 006898          474 QHITPQVLEMINNPHYLYRMTILRAISLLAP-VMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI  544 (626)
Q Consensus       474 ~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~-~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~  544 (626)
                      ..+.-.+.  ..|.++.+|....-.++.+.. ......... ++..+...+.|+-+.||..|+..|..+...
T Consensus       338 ~~~~~~l~--~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~  406 (1266)
T KOG1525|consen  338 STILLALR--ERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN  406 (1266)
T ss_pred             HHHHHHHH--hhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            11222222  244455555443332222111 011111223 777788888999999999999999999885

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=97.56  E-value=0.0074  Score=59.93  Aligned_cols=277  Identities=13%  Similarity=0.028  Sum_probs=135.3

Q ss_pred             hHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHH
Q 006898          147 GLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGC  226 (626)
Q Consensus       147 ~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l  226 (626)
                      -.++.+...++.+..+.+++.+...-+...+.+...++-.+|-..-.-.    -.+++..+.+++.++..-.-.++...+
T Consensus       395 yalGLI~Agfgr~~TeYL~e~~~~teDe~~~~l~yG~~LGiGL~~MgSa----n~eiye~lKe~l~nD~a~~geAa~~gM  470 (926)
T COG5116         395 YALGLIKAGFGREDTEYLLEYFLDTEDELTPELAYGVCLGIGLINMGSA----NREIYEKLKELLKNDRALLGEAAVYGM  470 (926)
T ss_pred             eeehhhccCcCcccHHHHHHHhCcccccccHHHHHHHHhhhcchhcccc----cHHHHHHHHHHHhcchhhhhhhhhhcc
Confidence            3444444455555555555444333222245666666665554432211    134666666666655544444444444


Q ss_pred             HHhhcccCchhhhhhhHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHH
Q 006898          227 AALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVT  305 (626)
Q Consensus       227 ~~l~~~~~~~~~~~~i~~~l~~~~~d-~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~  305 (626)
                      +-+.-....    ...+.-+...... ...++.+...-.+.-+.  +|.+   +..-.++-+++.|.++-.|-+.+-+++
T Consensus       471 Gl~mLgt~s----~eai~dm~tya~ETqhe~i~Rglgig~aLi~--ygrq---e~add~I~ell~d~ds~lRy~G~fs~a  541 (926)
T COG5116         471 GLLMLGTWS----VEAIEDMRTYAGETQHERIKRGLGIGFALIL--YGRQ---EMADDYINELLYDKDSILRYNGVFSLA  541 (926)
T ss_pred             ceeeecCCC----HHHHHHHHHHhcchhhhhHHhhhhhhhhHhh--hhhH---HHHHHHHHHHhcCchHHhhhccHHHHH
Confidence            332221111    1122222222211 12233333322222221  2221   112234446667777777776655554


Q ss_pred             HHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhc-CCCHHHHHHHHHhhHH
Q 006898          306 KFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQ  384 (626)
Q Consensus       306 ~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~L~~  384 (626)
                      .----.|...+...+++   -..+|.+..||+++.-+++.++-.      ....++-....|. ..++.||.+.+-+|+-
T Consensus       542 lAy~GTgn~~vv~~lLh---~avsD~nDDVrRAAViAlGfvc~~------D~~~lv~tvelLs~shN~hVR~g~AvaLGi  612 (926)
T COG5116         542 LAYVGTGNLGVVSTLLH---YAVSDGNDDVRRAAVIALGFVCCD------DRDLLVGTVELLSESHNFHVRAGVAVALGI  612 (926)
T ss_pred             HHHhcCCcchhHhhhhe---eecccCchHHHHHHHHheeeeEec------CcchhhHHHHHhhhccchhhhhhhHHHhhh
Confidence            32222222222222222   125677778888877777666521      1233444455554 4467788888778877


Q ss_pred             HHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhH--HHHHHHHHHHHhcCCc
Q 006898          385 VNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLQDKV  449 (626)
Q Consensus       385 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~--~~~l~p~l~~~l~d~~  449 (626)
                      .+...|..    ..+..+..+..|++..+|..++-+++.+.-++.++..  ...+...+.+.+.|+.
T Consensus       613 acag~G~~----~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Kh  675 (926)
T COG5116         613 ACAGTGDK----VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKH  675 (926)
T ss_pred             hhcCCccH----HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhh
Confidence            77666653    3445556666777777888877777777665544321  1234444555555443

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=97.52  E-value=0.00018  Score=42.12  Aligned_cols=29  Identities=45%  Similarity=0.535  Sum_probs=18.5

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHhHHHHHH
Q 006898          164 LRSIYTQLCQDDMPMVRRSAASNLGKFAA  192 (626)
Q Consensus       164 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~  192 (626)
                      ++|.+.++++|++++||.+++.+++.+++
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            35666666667777777777777666655

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=97.48  E-value=0.00023  Score=41.64  Aligned_cols=28  Identities=36%  Similarity=0.394  Sum_probs=14.9

Q ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHHH
Q 006898          438 GALCMQWLQDKVYSIRDAAANNLKRLAE  465 (626)
Q Consensus       438 ~p~l~~~l~d~~~~VR~~a~~~l~~l~~  465 (626)
                      +|.+.++++|+++.||.+|+.+++.+++
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            4555555555555555555555555543

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.47  E-value=0.0026  Score=67.56  Aligned_cols=222  Identities=16%  Similarity=0.069  Sum_probs=141.1

Q ss_pred             hhhhcccccc-ccCCchHHHHHHHHHHhccccccCC----cchhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcCh-
Q 006898           46 RKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGG----VEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE-  119 (626)
Q Consensus        46 ~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~----~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~-  119 (626)
                      .++=+|.+.+ +.+  --.|..|...|+.|... |.    -...-.|.|+..+|++++..+.|..-+-.+.+|...=+. 
T Consensus       470 PPeQLPiVLQVLLS--QvHRlRAL~LL~RFLDl-GpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SC  546 (1387)
T KOG1517|consen  470 PPEQLPIVLQVLLS--QVHRLRALVLLARFLDL-GPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSC  546 (1387)
T ss_pred             ChHhcchHHHHHHH--HHHHHHHHHHHHHHhcc-chhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchh
Confidence            3344555555 222  12366777788877663 21    112346889999999999888888766666665442221 


Q ss_pred             --hhHHHhHHHHHHHHhcC-C--ccchhHHHhhHhHHhcCCCChH----HHHHHHHHHHHhcCCC-CHHHHHHHHHhHHH
Q 006898          120 --SDLVDWYIPLVKRLAAG-E--WFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDD-MPMVRRSAASNLGK  189 (626)
Q Consensus       120 --~~~~~~l~~~l~~l~~~-~--~~~~r~~a~~~l~~~~~~~~~~----~~~~l~~~l~~l~~d~-~~~vR~~a~~~l~~  189 (626)
                        +.+.+....++.+.+.+ .  .++.|..++-+++.+..++...    ...+++.+++..++|+ .+-.|+-++-+||.
T Consensus       547 Q~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~  626 (1387)
T KOG1517|consen  547 QADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGR  626 (1387)
T ss_pred             HHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence              11111111111111222 2  2468889999999998887543    3367888888888884 69999999999999


Q ss_pred             HHHhhCcc---chhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc---h---hh------------hhhhHH----
Q 006898          190 FAATVEPA---HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP---Q---DC------------VAHILP----  244 (626)
Q Consensus       190 l~~~~~~~---~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~---~~------------~~~i~~----  244 (626)
                      +-+.+...   .........+..++.|+.++||.+|+.+|+.+......   +   ..            .+..++    
T Consensus       627 LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~  706 (1387)
T KOG1517|consen  627 LWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLM  706 (1387)
T ss_pred             HhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHH
Confidence            98877652   22334556677789999999999999999999886422   0   00            011111    


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006898          245 VIVNFSQDKSWRVRYMVANQLYELCE  270 (626)
Q Consensus       245 ~l~~~~~d~~~~vR~~a~~~l~~l~~  270 (626)
                      .+..+.+|.++.||...+.++..++.
T Consensus       707 ~ll~~vsdgsplvr~ev~v~ls~~~~  732 (1387)
T KOG1517|consen  707 SLLALVSDGSPLVRTEVVVALSHFVV  732 (1387)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHHH
Confidence            34455677777777777777766654

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=97.46  E-value=0.071  Score=49.84  Aligned_cols=149  Identities=12%  Similarity=0.039  Sum_probs=70.8

Q ss_pred             HHhhcCCchhHHHHHHHHHHHhhcccCchh----hhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHH
Q 006898          208 EDLTQDDQDSVRLLAVEGCAALGKLLEPQD----CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVP  283 (626)
Q Consensus       208 ~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~  283 (626)
                      ...+.++++.+|..|+..|..+.+.++++.    ....++.++...+.|. ..+..+ +.++..+... . ....+....
T Consensus         5 g~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~-~~~~~~-l~gl~~L~~~-~-~~~~~~~~~   80 (262)
T PF14500_consen    5 GEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH-ACVQPA-LKGLLALVKM-K-NFSPESAVK   80 (262)
T ss_pred             hhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH-hhHHHH-HHHHHHHHhC-c-CCChhhHHH
Confidence            345677788888888888888877777532    2334455555555432 223333 5666655522 1 111111222


Q ss_pred             HHHHhcCC-----ChHHHHHHHHHhHHHHHHhhChH--HHHHhhHHHHHHh-ccCCCHHHHHHHHHHHHhhhhhhcHHHH
Q 006898          284 AYVRLLRD-----NEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKEL-SSDSSQHVRSALASVIMGMAPLLGKDAT  355 (626)
Q Consensus       284 ~l~~~l~d-----~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l-~~d~~~~vr~~~~~~l~~l~~~~~~~~~  355 (626)
                      .+..++++     --...|..+.+.+..+.+.....  ...+.++..+.+. -+.++|+--..+.+.+..+...+.-..+
T Consensus        81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~  160 (262)
T PF14500_consen   81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEF  160 (262)
T ss_pred             HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchh
Confidence            22222221     11456666666666665542211  1112223333332 3445666555555555555554443333


Q ss_pred             HHhHH
Q 006898          356 IEQLL  360 (626)
Q Consensus       356 ~~~l~  360 (626)
                      .+.+.
T Consensus       161 ~e~lF  165 (262)
T PF14500_consen  161 AEDLF  165 (262)
T ss_pred             HHHHH
Confidence            33333

>KOG1851 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.44  E-value=0.34  Score=54.75  Aligned_cols=151  Identities=14%  Similarity=0.195  Sum_probs=99.5

Q ss_pred             hhHHHHHHHHh-cCCChHHHHHHHHHHHHHHHh--hC-hhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHH
Q 006898          396 QSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQ--LG-VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW  471 (626)
Q Consensus       396 ~~i~~~l~~~~-~~~~~~~r~~~~~~l~~l~~~--~~-~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~  471 (626)
                      ..++..+..+. .+.+|++|.+.+..+......  ++ .+.-.+.+...+...+.|.+..||+.|+.+|..+...-.-..
T Consensus      1525 ~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~~ 1604 (1710)
T KOG1851|consen 1525 PEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQF 1604 (1710)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcccccc
Confidence            44555555443 456799999999998876542  33 223346688889999999999999999999999876422111


Q ss_pred             HhhhhHHHHHh-h-hcCCChHHHHHHHHHHHHhccccChH--HhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhcc
Q 006898          472 AMQHITPQVLE-M-INNPHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  547 (626)
Q Consensus       472 ~~~~il~~l~~-~-l~~~~~~vR~~a~~~l~~i~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~  547 (626)
                      . +........ . ....+...+.+++.++|.++-.++-.  .+..+.+-.+.....++ ..++..+-+++.++-.....
T Consensus      1605 ~-~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrth~D 1682 (1710)
T KOG1851|consen 1605 V-SDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRTHAD 1682 (1710)
T ss_pred             c-hHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHhhh
Confidence            1 111122222 2 23345566788888999887655421  24555555666666666 77899999999988776544


Q ss_pred             c
Q 006898          548 S  548 (626)
Q Consensus       548 ~  548 (626)
                      .
T Consensus      1683 ~ 1683 (1710)
T KOG1851|consen 1683 T 1683 (1710)
T ss_pred             h
Confidence            3

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=97.44  E-value=0.054  Score=52.29  Aligned_cols=159  Identities=18%  Similarity=0.207  Sum_probs=95.2

Q ss_pred             HhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc-----------c
Q 006898          209 DLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP-----------T  277 (626)
Q Consensus       209 ~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~-----------~  277 (626)
                      ..+.++++.+|..|+++++-.+-.-.  ......++.+...++..+..+|..+++++..+....|.+.           .
T Consensus        34 P~v~~~~~~vR~~al~cLGl~~Lld~--~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~  111 (298)
T PF12719_consen   34 PAVQSSDPAVRELALKCLGLCCLLDK--ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVD  111 (298)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccch
Confidence            45666666777777777765543222  1223334444444444467777777777777766665332           1


Q ss_pred             ccchHHHHHHhcCCChHHHHHHHHHhHHHHHH--hhCh-HHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhc--H
Q 006898          278 RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCR--ILNP-ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG--K  352 (626)
Q Consensus       278 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~--~~~~-~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~--~  352 (626)
                      ...+...+...+.+.++++|..+++++.++.-  .+.. ..+...++-....-....+.++|+...-++...+..-.  +
T Consensus       112 ~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~Q  191 (298)
T PF12719_consen  112 SKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPENQ  191 (298)
T ss_pred             HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHHH
Confidence            23577788888888899999999999998654  2333 33333333222222334567888888877777765332  2


Q ss_pred             HHHHHhHHHHHHHhhcC
Q 006898          353 DATIEQLLPIFLSLLKD  369 (626)
Q Consensus       353 ~~~~~~l~~~l~~~l~d  369 (626)
                      +...+.++|.+..+.+.
T Consensus       192 ~~l~~~f~~~l~~~~~~  208 (298)
T PF12719_consen  192 ERLAEAFLPTLRTLSNA  208 (298)
T ss_pred             HHHHHHHHHHHHHHHhC
Confidence            33445566666665543

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.43  E-value=0.012  Score=59.94  Aligned_cols=142  Identities=23%  Similarity=0.241  Sum_probs=63.8

Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHH---hH----HHHHHHhhcCCCHHHHHHHHHhhHHHHhhh----c
Q 006898          322 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIE---QL----LPIFLSLLKDEFPDVRLNIISKLDQVNQVI----G  390 (626)
Q Consensus       322 ~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~---~l----~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~----~  390 (626)
                      |.+-+.++-+|..||..++..+-.+....+++...+   .+    ...+.++|.|+.+.||..|...+..+...+    +
T Consensus       177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP  256 (1005)
T KOG1949|consen  177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIP  256 (1005)
T ss_pred             HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence            333444455555666665555555555555543211   11    223445555555666655555555443332    1


Q ss_pred             hhhHHhhHHHHH-HHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 006898          391 IDLLSQSLLPAI-VELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLA  464 (626)
Q Consensus       391 ~~~~~~~i~~~l-~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~  464 (626)
                      +..+ ..++..+ -.+..|....+|.+..+.+..++..-......++++|.+-..+.|+...||-+++..+..+-
T Consensus       257 ~~i~-~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik  330 (1005)
T KOG1949|consen  257 PTIL-IDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK  330 (1005)
T ss_pred             HHHH-HHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence            1111 1111111 11223444455555555555554332222233445555555555555555555555554443

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.41  E-value=0.0065  Score=55.91  Aligned_cols=168  Identities=11%  Similarity=0.084  Sum_probs=115.9

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHH---HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhh
Q 006898          398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD---DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQ  474 (626)
Q Consensus       398 i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~---~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~  474 (626)
                      .+......+.+.+|.....++..+..++.... +...   ..++..+.+-+......|-.+|+.+++.++..++.... +
T Consensus        89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~-e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~-~  166 (334)
T KOG2933|consen   89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHP-ESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID-Q  166 (334)
T ss_pred             HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            34444556678889999988888888876544 2222   33455566667888889999999999999999887632 2


Q ss_pred             hhHHHHHhhh---cCCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc---
Q 006898          475 HITPQVLEMI---NNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---  548 (626)
Q Consensus       475 ~il~~l~~~l---~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~---  548 (626)
                      .+-..+..++   ...+.-+|..+-.++..++.+..+..    +++.|...+...++.+|..++.++.+....+|-.   
T Consensus       167 ~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~----~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~  242 (334)
T KOG2933|consen  167 ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK----LLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVL  242 (334)
T ss_pred             HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH----HHHHHHHHHhhhchhhhhhhhccccccceeccccchh
Confidence            2223333333   34577799999999999998887764    4555555577889999999999999888777632   


Q ss_pred             -hhhhcccchHHhhhccCCCccccc
Q 006898          549 -VSTFSVSPFSFMLYLNVNNFNVGF  572 (626)
Q Consensus       549 -~~~~~i~~~l~~~l~~d~d~~vr~  572 (626)
                       ++.....+.+. .-..|.=+..+.
T Consensus       243 ~~~~~dl~~a~~-~~~~d~Lp~~~~  266 (334)
T KOG2933|consen  243 LQGSCDLSRAAQ-EQGSDKLPELRE  266 (334)
T ss_pred             hHhHHHHHHHHH-hhhccccccccc
Confidence             22223345555 455666666665

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=97.36  E-value=0.29  Score=57.91  Aligned_cols=290  Identities=13%  Similarity=0.139  Sum_probs=169.4

Q ss_pred             HHHHHHHHHHhhcccCc------hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC-c-----cccchHHHHH
Q 006898          219 RLLAVEGCAALGKLLEP------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE-P-----TRMDLVPAYV  286 (626)
Q Consensus       219 r~~a~~~l~~l~~~~~~------~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~-~-----~~~~l~~~l~  286 (626)
                      |..++.-+..++..--.      ..+|..+-+++.....+++..++..++..|.+++..+-.. .     +.++++..|.
T Consensus      1109 r~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe 1188 (1780)
T PLN03076       1109 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFV 1188 (1780)
T ss_pred             chhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHH
Confidence            55566666655544322      2345556666666655666778899988888888765322 1     2234555555


Q ss_pred             Hhc-CCChHHHHHHHHHhHHHHHHhhChH--HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhh-hc---H--HHHHH
Q 006898          287 RLL-RDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL-LG---K--DATIE  357 (626)
Q Consensus       287 ~~l-~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~-~~---~--~~~~~  357 (626)
                      ..+ +..+.++|+..++++..+....+..  .-++.++..+.....++++.+-..+.+.+..+... ++   .  .....
T Consensus      1189 ~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~ 1268 (1780)
T PLN03076       1189 IVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT 1268 (1780)
T ss_pred             HHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH
Confidence            544 4556799999999999988765543  12455666666566777777777777777766532 22   1  11223


Q ss_pred             hHHHHHHHhhcCC-CHHHHHHHHHhhHHHHhhh-----------------------------------chh---hHHhhH
Q 006898          358 QLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVI-----------------------------------GID---LLSQSL  398 (626)
Q Consensus       358 ~l~~~l~~~l~d~-~~~vr~~a~~~L~~~~~~~-----------------------------------~~~---~~~~~i  398 (626)
                      .++..+..+.+.. +.++-..|+..|..+...+                                   +.+   .+.-.+
T Consensus      1269 DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pL 1348 (1780)
T PLN03076       1269 DCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPL 1348 (1780)
T ss_pred             HHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHH
Confidence            4444444444322 3455555555555442221                                   000   011124


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhh--------HHHHHHHHHHHHhc----------------------CC
Q 006898          399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--------FDDKLGALCMQWLQ----------------------DK  448 (626)
Q Consensus       399 ~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~--------~~~~l~p~l~~~l~----------------------d~  448 (626)
                      +..+.++..|+...||..|++.+-.+....|..+        +...+.|++-.+-.                      +.
T Consensus      1349 L~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 1428 (1780)
T PLN03076       1349 LAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQ 1428 (1780)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhh
Confidence            4445556778899999999999888877666432        23345555433210                      11


Q ss_pred             chHHHHHHHHHHHHHHHHhChHH-----HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccCh
Q 006898          449 VYSIRDAAANNLKRLAEEFGPEW-----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS  508 (626)
Q Consensus       449 ~~~VR~~a~~~l~~l~~~~~~~~-----~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~  508 (626)
                      ..++.+....++..++..+...+     ..+.++..+..++..+|...-..+..|+.+++...|.
T Consensus      1429 ~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~ 1493 (1780)
T PLN03076       1429 DAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGH 1493 (1780)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhc
Confidence            22456666666666666554321     2234444444556778888888889999988765554

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=97.30  E-value=0.28  Score=50.64  Aligned_cols=125  Identities=12%  Similarity=0.065  Sum_probs=67.2

Q ss_pred             HHHHHhHHHHHHh--hChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhc------C
Q 006898          298 IAAAGKVTKFCRI--LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK------D  369 (626)
Q Consensus       298 ~~a~~~l~~l~~~--~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~------d  369 (626)
                      ..++..+..+...  ++.+.+ ..++..|.....-.  .....+-+.+..++...-    ....+..+...+.      .
T Consensus       195 ~~~L~vldaii~y~~iP~~sl-~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~----g~~~i~~L~~iL~~~~~~~~  267 (464)
T PF11864_consen  195 EACLSVLDAIITYGDIPSESL-SPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHL----GHSAIRTLCDILRSPDPQNK  267 (464)
T ss_pred             HHHHHHHHHHHHcCcCChHHH-HHHHHHHhhHhccc--ccchhHHHHHHHHHcCcc----HHHHHHHHHHHHcccCcccc
Confidence            5666666666552  233222 33333343332211  333334444555543211    1223344455552      2


Q ss_pred             CCHHHHHHHHHhhHHHHhhhchhhHH------hhHHHHHHHHhcCCChHHHHHHHHHHHHHH-HhhC
Q 006898          370 EFPDVRLNIISKLDQVNQVIGIDLLS------QSLLPAIVELAEDRHWRVRLAIIEYIPLLA-SQLG  429 (626)
Q Consensus       370 ~~~~vr~~a~~~L~~~~~~~~~~~~~------~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~-~~~~  429 (626)
                      ++..+-.+|+..++.+.-..|.+.+.      ..++|.+...++.++.++-...+..+..+. +.++
T Consensus       268 ~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~  334 (464)
T PF11864_consen  268 RDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYG  334 (464)
T ss_pred             ccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhh
Confidence            34566678888888776554333221      238899999888888888878887777777 4444

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=97.27  E-value=0.29  Score=50.38  Aligned_cols=148  Identities=11%  Similarity=0.008  Sum_probs=110.8

Q ss_pred             hChhhHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhh-cCCChHHHHHHHHHHHHh
Q 006898          428 LGVGFFDDKLGALCMQWLQD----KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI-NNPHYLYRMTILRAISLL  502 (626)
Q Consensus       428 ~~~~~~~~~l~p~l~~~l~d----~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l-~~~~~~vR~~a~~~l~~i  502 (626)
                      +|.......+.|++......    +++.+..+|.-+|..+.-.- .+ +..+=+|.++..+ ++|+|.+|.+++-++|.+
T Consensus       884 yGeksvLs~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS-~~-fc~ehlpllIt~mek~p~P~IR~NaVvglgD~  961 (1128)
T COG5098         884 YGEKSVLSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLS-FE-FCSEHLPLLITSMEKHPIPRIRANAVVGLGDF  961 (1128)
T ss_pred             hchhHHHhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHh-HH-HHHHHHHHHHHHHhhCCCcceeccceeecccc
Confidence            45555666778888777665    78889999988888775432 22 3455678887755 589999999999999987


Q ss_pred             ccccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccchhhhcccchHHhhhccCCCcccccccccCchhHH
Q 006898          503 APVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLF  582 (626)
Q Consensus       503 ~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~  582 (626)
                      .-.+.  .+.++.-.+|...+.|.+..||..+..++..++.. |. .-...-++.+. +++.|+|.++..         .
T Consensus       962 ~vcfN--~~~de~t~yLyrrL~De~~~V~rtclmti~fLila-gq-~KVKGqlg~ma-~~L~deda~Isd---------m 1027 (1128)
T COG5098         962 LVCFN--TTADEHTHYLYRRLGDEDADVRRTCLMTIHFLILA-GQ-LKVKGQLGKMA-LLLTDEDAEISD---------M 1027 (1128)
T ss_pred             ceehh--hhhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHc-cc-eeeccchhhhH-hhccCCcchHHH---------H
Confidence            65443  24566778899999999999999999999988755 22 22245577888 899999999999         7


Q ss_pred             HHHHHHHHH
Q 006898          583 SCLALNYCH  591 (626)
Q Consensus       583 a~~al~~~~  591 (626)
                      |..-+..++
T Consensus      1028 ar~fft~~a 1036 (1128)
T COG5098        1028 ARHFFTQIA 1036 (1128)
T ss_pred             HHHHHHHHH
Confidence            777665553

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.26  E-value=0.0081  Score=55.28  Aligned_cols=172  Identities=13%  Similarity=0.122  Sum_probs=116.7

Q ss_pred             HHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc--hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccc
Q 006898          203 IMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMD  280 (626)
Q Consensus       203 ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~  280 (626)
                      .+......+.+++|+....++..+..++.+-++  ......++..+.+-+.++...|-++++.+++.+...++..... .
T Consensus        89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~-~  167 (334)
T KOG2933|consen   89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ-E  167 (334)
T ss_pred             HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            344445556777888888888888877766554  2234456666677788888889999999999999887755432 2


Q ss_pred             hHHHHHHhc---CCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcH----H
Q 006898          281 LVPAYVRLL---RDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK----D  353 (626)
Q Consensus       281 l~~~l~~~l---~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~----~  353 (626)
                      +-..+..++   .+.+.-||+.|-++|..+.....+......++|.    +.+.++++|..++.++......+|.    .
T Consensus       168 ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~----~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~  243 (334)
T KOG2933|consen  168 LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPI----LQHSNPRVRAKAALCFSRCVIRLGVLPVLL  243 (334)
T ss_pred             HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHH----Hhhhchhhhhhhhccccccceeccccchhh
Confidence            222223333   3455789999999999999988877665555555    5778889999888877777666652    2


Q ss_pred             HHHHhHHHHHHHhhcCCCHHHHHHHH
Q 006898          354 ATIEQLLPIFLSLLKDEFPDVRLNII  379 (626)
Q Consensus       354 ~~~~~l~~~l~~~l~d~~~~vr~~a~  379 (626)
                      .+...+.+.+..-..|.-+.+|.+|-
T Consensus       244 ~~~~dl~~a~~~~~~d~Lp~~~~~a~  269 (334)
T KOG2933|consen  244 QGSCDLSRAAQEQGSDKLPELREAAR  269 (334)
T ss_pred             HhHHHHHHHHHhhhcccccccccchh
Confidence            23445556666666777666665443

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=97.20  E-value=0.093  Score=56.89  Aligned_cols=202  Identities=16%  Similarity=0.166  Sum_probs=104.3

Q ss_pred             HHHHHHHHHhcCC-CCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhccc-Cc-hhh
Q 006898          162 TELRSIYTQLCQD-DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL-EP-QDC  238 (626)
Q Consensus       162 ~~l~~~l~~l~~d-~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~-~~-~~~  238 (626)
                      ++|..++..+... .....|.....++.....        ..-+..+.+++...+-.- ..+...+..+.... .+ ...
T Consensus       362 ~~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT--------~~av~~i~~~I~~~~~~~-~ea~~~l~~l~~~~~~Pt~e~  432 (618)
T PF01347_consen  362 EDLEELYKQLKSKSKKEQARKIFLDALPQAGT--------NPAVKFIKDLIKSKKLTD-DEAAQLLASLPFHVRRPTEEL  432 (618)
T ss_dssp             HHHHHHHHHHTTS---HHHHHHHHHHHHHH-S--------HHHHHHHHHHHHTT-S-H-HHHHHHHHHHHHT-----HHH
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHcCCCCH-HHHHHHHHHHHhhcCCCCHHH
Confidence            3344444333322 356677777777766433        122233344444322111 12344454444443 22 333


Q ss_pred             hhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC------------ccccchHHHHHHhc----CCChHHHHHHHHH
Q 006898          239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE------------PTRMDLVPAYVRLL----RDNEAEVRIAAAG  302 (626)
Q Consensus       239 ~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~------------~~~~~l~~~l~~~l----~d~~~~vr~~a~~  302 (626)
                      ...+.+.+..-....+..+|.+++-+++.+.......            ...+.+++.+...+    +..+.+.+..+++
T Consensus       433 l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk  512 (618)
T PF01347_consen  433 LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLK  512 (618)
T ss_dssp             HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHH
Confidence            3334443332222346779999999999887654222            22334555555444    3455677788888


Q ss_pred             hHHHHHHhhChHHHHHhhHHHHHHhccCC---CHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcC--CCHHHHHH
Q 006898          303 KVTKFCRILNPELAIQHILPCVKELSSDS---SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD--EFPDVRLN  377 (626)
Q Consensus       303 ~l~~l~~~~~~~~~~~~l~~~l~~l~~d~---~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~  377 (626)
                      +|+.++.        ...++.+...+.+.   ...+|.+|+.++..+....     .+.+.+.+...+.|  +++++|.+
T Consensus       513 aLgN~g~--------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~-----~~~v~~~l~~I~~n~~e~~EvRia  579 (618)
T PF01347_consen  513 ALGNLGH--------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC-----PEKVREILLPIFMNTTEDPEVRIA  579 (618)
T ss_dssp             HHHHHT---------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT------HHHHHHHHHHHHH-TTS-HHHHHH
T ss_pred             HhhccCC--------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC-----cHHHHHHHHHHhcCCCCChhHHHH
Confidence            8887754        34566666666555   6788999998888775433     22344455555543  45789988


Q ss_pred             HHHhhHHH
Q 006898          378 IISKLDQV  385 (626)
Q Consensus       378 a~~~L~~~  385 (626)
                      |...|-..
T Consensus       580 A~~~lm~~  587 (618)
T PF01347_consen  580 AYLILMRC  587 (618)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            87766553

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=97.09  E-value=0.031  Score=60.57  Aligned_cols=159  Identities=19%  Similarity=0.148  Sum_probs=94.4

Q ss_pred             hhHHHHHHHHhcC----CChHHHHHHHHHHHHHHHhhChh------------h----HHHHHHHHHHHHhcCCchHHHHH
Q 006898          396 QSLLPAIVELAED----RHWRVRLAIIEYIPLLASQLGVG------------F----FDDKLGALCMQWLQDKVYSIRDA  455 (626)
Q Consensus       396 ~~i~~~l~~~~~~----~~~~~r~~~~~~l~~l~~~~~~~------------~----~~~~l~p~l~~~l~d~~~~VR~~  455 (626)
                      ..++..+..+++.    .+..++..++-+++.+.......            .    +.+.+...+.......+..-+..
T Consensus       430 ~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  509 (618)
T PF01347_consen  430 EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIV  509 (618)
T ss_dssp             HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHH
T ss_pred             HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHH
Confidence            3455555555543    35678888888888887654222            1    22334444444455667788888


Q ss_pred             HHHHHHHHHHHhChHHHhhhhHHHHHhhhcCC---ChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHH
Q 006898          456 AANNLKRLAEEFGPEWAMQHITPQVLEMINNP---HYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKF  532 (626)
Q Consensus       456 a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~---~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~  532 (626)
                      ++++||.+..        ...++.+...+.+.   ...+|..|+.++..++..+. +...+.++|.+..-  ..+.+||.
T Consensus       510 ~LkaLgN~g~--------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~-~~v~~~l~~I~~n~--~e~~EvRi  578 (618)
T PF01347_consen  510 YLKALGNLGH--------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP-EKVREILLPIFMNT--TEDPEVRI  578 (618)
T ss_dssp             HHHHHHHHT---------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H-HHHHHHHHHHHH-T--TS-HHHHH
T ss_pred             HHHHhhccCC--------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc-HHHHHHHHHHhcCC--CCChhHHH
Confidence            8888887742        34677777776655   67899999999998865443 33455555555542  33467999


Q ss_pred             HHHHHHHHHHhhhccchhhhcccchHHhhhccCCCccccc
Q 006898          533 NVAKVLQSLIPIVDQSVSTFSVSPFSFMLYLNVNNFNVGF  572 (626)
Q Consensus       533 ~a~~~l~~i~~~~~~~~~~~~i~~~l~~~l~~d~d~~vr~  572 (626)
                      +|...|-..-..       ..++..+...+..|++..|+.
T Consensus       579 aA~~~lm~~~P~-------~~~l~~i~~~l~~E~~~QV~s  611 (618)
T PF01347_consen  579 AAYLILMRCNPS-------PSVLQRIAQSLWNEPSNQVAS  611 (618)
T ss_dssp             HHHHHHHHT----------HHHHHHHHHHHTT-S-HHHHH
T ss_pred             HHHHHHHhcCCC-------HHHHHHHHHHHhhCchHHHHH
Confidence            998777664322       123333332667888888888

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=97.05  E-value=0.044  Score=58.70  Aligned_cols=159  Identities=17%  Similarity=0.132  Sum_probs=97.2

Q ss_pred             hhHHHHHHHHhcCC----ChHHHHHHHHHHHHHHHhhCh------hhHHHHHHHHHHH----HhcCCchHHHHHHHHHHH
Q 006898          396 QSLLPAIVELAEDR----HWRVRLAIIEYIPLLASQLGV------GFFDDKLGALCMQ----WLQDKVYSIRDAAANNLK  461 (626)
Q Consensus       396 ~~i~~~l~~~~~~~----~~~~r~~~~~~l~~l~~~~~~------~~~~~~l~p~l~~----~l~d~~~~VR~~a~~~l~  461 (626)
                      ..++..+..+++++    +..+|..++-+++.+......      ....+.+.|.+..    ...+.+...+....++||
T Consensus       392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG  471 (574)
T smart00638      392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG  471 (574)
T ss_pred             HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence            45666777776643    567888999999988874321      1122344444444    344556667777888887


Q ss_pred             HHHHHhChHHHhhhhHHHHHhhhc---CCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHH
Q 006898          462 RLAEEFGPEWAMQHITPQVLEMIN---NPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVL  538 (626)
Q Consensus       462 ~l~~~~~~~~~~~~il~~l~~~l~---~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l  538 (626)
                      .+...        ..++.+...+.   .....+|..|+.++..++...... ..+.+++.+..  .+.+++||..|+..|
T Consensus       472 N~g~~--------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~-v~~~l~~i~~n--~~e~~EvRiaA~~~l  540 (574)
T smart00638      472 NAGHP--------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK-VQEVLLPIYLN--RAEPPEVRMAAVLVL  540 (574)
T ss_pred             ccCCh--------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH-HHHHHHHHHcC--CCCChHHHHHHHHHH
Confidence            66422        22333333332   345789999999999887655433 44555555533  345678999998888


Q ss_pred             HHHHhhhccchhhhcccchHHhhhccCCCccccc
Q 006898          539 QSLIPIVDQSVSTFSVSPFSFMLYLNVNNFNVGF  572 (626)
Q Consensus       539 ~~i~~~~~~~~~~~~i~~~l~~~l~~d~d~~vr~  572 (626)
                      -..-..       ...+..+...+..|++..|+.
T Consensus       541 m~t~P~-------~~~l~~ia~~l~~E~~~QV~s  567 (574)
T smart00638      541 METKPS-------VALLQRIAELLNKEPNLQVAS  567 (574)
T ss_pred             HhcCCC-------HHHHHHHHHHHhhcCcHHHHH
Confidence            764322       123333332666788888887

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=97.04  E-value=0.035  Score=54.77  Aligned_cols=126  Identities=16%  Similarity=0.239  Sum_probs=87.2

Q ss_pred             chHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhc------CCChHHHHHHHHHHHHhccccC---------------
Q 006898          449 VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN------NPHYLYRMTILRAISLLAPVMG---------------  507 (626)
Q Consensus       449 ~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~------~~~~~vR~~a~~~l~~i~~~~~---------------  507 (626)
                      ...-|.+|+..+..+++..+... ...+...+..+++      ..+|+-+.+|+..++.++....               
T Consensus       224 ~~TrR~AA~dfl~~L~~~~~~~v-~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v  302 (370)
T PF08506_consen  224 SDTRRRAACDFLRSLCKKFEKQV-TSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDV  302 (370)
T ss_dssp             --SHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-H
T ss_pred             cCCcHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccH
Confidence            35678899999999998876542 2222233333332      3589999999999999875442               


Q ss_pred             hHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccchhhhcccchHHhhhccCCCcccccccccCchhHHHHHHH
Q 006898          508 SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLAL  587 (626)
Q Consensus       508 ~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al  587 (626)
                      .+++...++|.|. --.+..|-+|..|++.+..+...++.+ ....++|.+. .++.+++.-|+.         ||+.|+
T Consensus       303 ~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~-~l~~~~~~l~-~~L~~~~~vv~t---------yAA~~i  370 (370)
T PF08506_consen  303 VDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKE-QLLQIFPLLV-NHLQSSSYVVHT---------YAAIAI  370 (370)
T ss_dssp             HHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HH-HHHHHHHHHH-HHTTSS-HHHHH---------HHHHHH
T ss_pred             HHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHH-HHHHHHHHHH-HHhCCCCcchhh---------hhhhhC
Confidence            1245677888887 444566779999999999998887654 4457899999 999999999999         998764

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.00  E-value=0.015  Score=62.06  Aligned_cols=208  Identities=18%  Similarity=0.114  Sum_probs=135.6

Q ss_pred             chhHHHhhHhHHhcCCCChH----HHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc---cchhhhHHHHHHHhhc
Q 006898          140 TARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQ  212 (626)
Q Consensus       140 ~~r~~a~~~l~~~~~~~~~~----~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~l~~  212 (626)
                      ..|..|..+++.+...-+=.    .-=-|.|..+++++.+..+.|...+...+++...-+.   +.+.+....++.+.+.
T Consensus       485 vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~  564 (1387)
T KOG1517|consen  485 VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLD  564 (1387)
T ss_pred             HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEec
Confidence            35777888888876543211    1124889999999999999999887777776554321   1122222234444455


Q ss_pred             C-C--chhHHHHHHHHHHHhhcccCc---hhhhhhhHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhCCCcc---ccchH
Q 006898          213 D-D--QDSVRLLAVEGCAALGKLLEP---QDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPEPT---RMDLV  282 (626)
Q Consensus       213 d-~--~~~vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~~~~---~~~l~  282 (626)
                      + +  +++-|..|...|..+...+..   +-....++.+....++|+ .+-.|.=++-+||.+-+.+...-.   ....-
T Consensus       565 ~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ah  644 (1387)
T KOG1517|consen  565 PSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAH  644 (1387)
T ss_pred             CcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHH
Confidence            4 2  458899999999999988754   233455666666667774 799999999999999776543211   12345


Q ss_pred             HHHHHhcCCChHHHHHHHHHhHHHHHHhh----ChH--------------HHHHhhHH----HHHHhccCCCHHHHHHHH
Q 006898          283 PAYVRLLRDNEAEVRIAAAGKVTKFCRIL----NPE--------------LAIQHILP----CVKELSSDSSQHVRSALA  340 (626)
Q Consensus       283 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~----~~~--------------~~~~~l~~----~l~~l~~d~~~~vr~~~~  340 (626)
                      .-+..+++|+.++||.+|+-+|+.+....    ...              ...+.+++    .+..+.+|.++-||..+.
T Consensus       645 ekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~  724 (1387)
T KOG1517|consen  645 EKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVV  724 (1387)
T ss_pred             HHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHH
Confidence            56778889999999999999999998753    110              00122222    334455667777777666


Q ss_pred             HHHHhhh
Q 006898          341 SVIMGMA  347 (626)
Q Consensus       341 ~~l~~l~  347 (626)
                      .++..++
T Consensus       725 v~ls~~~  731 (1387)
T KOG1517|consen  725 VALSHFV  731 (1387)
T ss_pred             HHHHHHH
Confidence            6655543

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.97  E-value=0.071  Score=51.48  Aligned_cols=159  Identities=16%  Similarity=0.173  Sum_probs=95.6

Q ss_pred             HHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhH----------
Q 006898          364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF----------  433 (626)
Q Consensus       364 ~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~----------  433 (626)
                      ...+...++.||..++++||-++-. +.+. ....++.+...++..+..+|..+++++.-+.-..|...+          
T Consensus        33 ~P~v~~~~~~vR~~al~cLGl~~Ll-d~~~-a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~  110 (298)
T PF12719_consen   33 LPAVQSSDPAVRELALKCLGLCCLL-DKEL-AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESV  110 (298)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHh-ChHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccc
Confidence            3455566666666666666655432 1111 233445555555445666666666666666655553332          


Q ss_pred             -HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHh-hhhHHHHHhhhcC----CChHHHHHHHHHHHHhccccC
Q 006898          434 -DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM-QHITPQVLEMINN----PHYLYRMTILRAISLLAPVMG  507 (626)
Q Consensus       434 -~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~-~~il~~l~~~l~~----~~~~vR~~a~~~l~~i~~~~~  507 (626)
                       ...+...+.+.+.+.++++|..|++.+.++.-...-  .. ..++..+.-..-+    ++...|+....++...+....
T Consensus       111 ~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i--~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~  188 (298)
T PF12719_consen  111 DSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRI--SDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSP  188 (298)
T ss_pred             hHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCH
Confidence             245777888888888999999999999998754211  12 4556666554444    356777777777776665332


Q ss_pred             --hHHhhhcHHHHHhhhCCCC
Q 006898          508 --SEITCSRLLPVVINASKDR  526 (626)
Q Consensus       508 --~~~~~~~~l~~l~~~l~d~  526 (626)
                        .+.+.+..+|.+..+.+.+
T Consensus       189 ~~Q~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  189 ENQERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHHHHHHHHHHHHHHhCc
Confidence              2234556667777765443

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.93  E-value=0.69  Score=48.61  Aligned_cols=222  Identities=15%  Similarity=0.122  Sum_probs=123.6

Q ss_pred             HHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHH------HHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc-cc
Q 006898          126 YIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTE------LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-AH  198 (626)
Q Consensus       126 l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~------l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-~~  198 (626)
                      .+..+.......++.+|..+++++..+..+-+.+.++-      =+.-+..++.|....+|..++-.|..+.+..+. +.
T Consensus       123 ~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQK  202 (970)
T KOG0946|consen  123 NITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQK  202 (970)
T ss_pred             hHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHH
Confidence            45556666677789999999999999999888765543      345677788899899999999999998876543 11


Q ss_pred             h--hhhHHHHHHHhhcCC----chhHHHHHHHHHHHhhcccCc-hhh--hhhhHHHHHHh-----cCCC---CHHH-HHH
Q 006898          199 L--KTDIMSIFEDLTQDD----QDSVRLLAVEGCAALGKLLEP-QDC--VAHILPVIVNF-----SQDK---SWRV-RYM  260 (626)
Q Consensus       199 ~--~~~ll~~l~~l~~d~----~~~vr~~a~~~l~~l~~~~~~-~~~--~~~i~~~l~~~-----~~d~---~~~v-R~~  260 (626)
                      .  .+.+...+..++..+    .--|-.-|+..+.++.+.-.. +.+  ....+|-+.++     ..|.   .|.. |..
T Consensus       203 lVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~  282 (970)
T KOG0946|consen  203 LVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQ  282 (970)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHH
Confidence            0  111223333333322    225677788888887765432 211  12234444332     2342   3433 322


Q ss_pred             HHHHHHHHHHH-hCCC------------ccccchHHHHHHhcCCC--hHHHHHHHHHhHHHHHHhhCh--HHHH------
Q 006898          261 VANQLYELCEA-VGPE------------PTRMDLVPAYVRLLRDN--EAEVRIAAAGKVTKFCRILNP--ELAI------  317 (626)
Q Consensus       261 a~~~l~~l~~~-~~~~------------~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~--~~~~------  317 (626)
                      -+...-.+.+. ....            .....++..+...+-.+  ..+|+..++.+.+.+......  +.+.      
T Consensus       283 Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~  362 (970)
T KOG0946|consen  283 NVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPS  362 (970)
T ss_pred             HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCC
Confidence            22222222222 1111            11235666666655443  357888888777776552211  0111      


Q ss_pred             -----HhhHHHHHHhccCC-CHHHHHHHHHHHHhhh
Q 006898          318 -----QHILPCVKELSSDS-SQHVRSALASVIMGMA  347 (626)
Q Consensus       318 -----~~l~~~l~~l~~d~-~~~vr~~~~~~l~~l~  347 (626)
                           ..++-.+..+..+. .+..|.++.-++..+.
T Consensus       363 ~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l  398 (970)
T KOG0946|consen  363 IPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYL  398 (970)
T ss_pred             CCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence                 12223334444443 4578888877776543

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=96.93  E-value=0.014  Score=50.61  Aligned_cols=147  Identities=18%  Similarity=0.182  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHH
Q 006898          102 VRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRR  181 (626)
Q Consensus       102 vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~  181 (626)
                      ||..|..++..+++..++..+.+++--++-.    .+...+                ..   -.+++.-++.|++++||.
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~----~~~~~~----------------~~---~~sLlt~il~Dp~~kvR~   58 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPD----SVLQGR----------------PA---TPSLLTCILKDPSPKVRA   58 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCC----CCCcCC----------------CC---CcchhHHHHcCCchhHHH
Confidence            7999999999999997776555544333321    100000                00   112344566788888898


Q ss_pred             HHHHhHHHHHHhhCcc------------ch----------hhhHHHHHHHhhcCC-chhHHHHHHHHHHHhhcccCch--
Q 006898          182 SAASNLGKFAATVEPA------------HL----------KTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQ--  236 (626)
Q Consensus       182 ~a~~~l~~l~~~~~~~------------~~----------~~~ll~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~--  236 (626)
                      +|+..+..+.+...+.            .|          .-++...+...+..+ +..+-...++++..+.+..+-.  
T Consensus        59 aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL  138 (182)
T PF13251_consen   59 AAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRL  138 (182)
T ss_pred             HHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhc
Confidence            8888888877643210            00          112333344444444 4566667788888777776643  


Q ss_pred             --hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 006898          237 --DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA  271 (626)
Q Consensus       237 --~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~  271 (626)
                        ++.+.++..+...+.+.+..||..+..+++.+...
T Consensus       139 ~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~  175 (182)
T PF13251_consen  139 PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV  175 (182)
T ss_pred             CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence              33444555555666667777777777777766543

>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]

Probab=96.81  E-value=0.41  Score=45.86  Aligned_cols=112  Identities=18%  Similarity=0.186  Sum_probs=71.2

Q ss_pred             chhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhc-------
Q 006898          140 TARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ-------  212 (626)
Q Consensus       140 ~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~-------  212 (626)
                      ..+..|.+.|+.++.++++ ...+.+..-+.+++|.+..||++|++.|..++..    ...+.+.+.+.++++       
T Consensus        39 k~k~lasq~ip~~fk~fp~-la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~----d~~~rv~d~l~qLLnk~sl~~L  113 (460)
T KOG2213|consen   39 KEKRLASQFIPRFFKHFPS-LADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG----DALSRVNDVLVQLLNKASLTGL  113 (460)
T ss_pred             HHHHHHHHHHHHHHhhCch-hhhHHHHhhhccccccchhhHHHHHhccchhccC----chhhhhHHHHHHHHHHHHHHHH
Confidence            4456778888888888864 3344556667899999999999999999998875    334444454444443       


Q ss_pred             -----CCchhHHHHHHHHHHHhhcccCc----hhhhhhhHHHHHHhcCCCCHH
Q 006898          213 -----DDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQDKSWR  256 (626)
Q Consensus       213 -----d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~i~~~l~~~~~d~~~~  256 (626)
                           -.+..+|..++..+..=.-.++.    .+....++..+++.+.|...+
T Consensus       114 f~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtge  166 (460)
T KOG2213|consen  114 FGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGE  166 (460)
T ss_pred             HhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHH
Confidence                 13556777666655432222221    334555666666666666554

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=96.77  E-value=0.15  Score=50.35  Aligned_cols=124  Identities=17%  Similarity=0.184  Sum_probs=62.8

Q ss_pred             HHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhc------CCChHHHHHHHHHHHHHHHhhC---------------h
Q 006898          372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE------DRHWRVRLAIIEYIPLLASQLG---------------V  430 (626)
Q Consensus       372 ~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~r~~~~~~l~~l~~~~~---------------~  430 (626)
                      ..-|.+|...+..+++..+.... +.+...+..+++      ..+|+-+.+|+..++.++....               .
T Consensus       225 ~TrR~AA~dfl~~L~~~~~~~v~-~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~  303 (370)
T PF08506_consen  225 DTRRRAACDFLRSLCKKFEKQVT-SILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV  303 (370)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred             CCcHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence            56777888888888877654432 222223333322      4579999999999998876431               1


Q ss_pred             hhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHH
Q 006898          431 GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRA  498 (626)
Q Consensus       431 ~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~  498 (626)
                      +++.+++.|-+. --.+..+-+|..|++.+..+-..+.++ ....++|.+...+.+++.-|+..|+.+
T Consensus       304 ~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~-~l~~~~~~l~~~L~~~~~vv~tyAA~~  369 (370)
T PF08506_consen  304 DFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKE-QLLQIFPLLVNHLQSSSYVVHTYAAIA  369 (370)
T ss_dssp             HHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HH-HHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred             HHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHhCCCCcchhhhhhhh
Confidence            122333344333 112334445555555555554444433 233455555555555555555555443

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=96.74  E-value=0.02  Score=49.79  Aligned_cols=130  Identities=14%  Similarity=0.113  Sum_probs=81.0

Q ss_pred             HHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHH
Q 006898           89 PPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIY  168 (626)
Q Consensus        89 ~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l  168 (626)
                      +++..+..|+++.+|.+|+.++..+.+...+         ++......+   .+..+..-++   ..+ .....++-..+
T Consensus        43 sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~---------~L~~Ae~~~---~~~~sFtslS---~tL-a~~i~~lH~~L  106 (182)
T PF13251_consen   43 SLLTCILKDPSPKVRAAAASALAALLEGSKP---------FLAQAEESK---GPSGSFTSLS---STL-ASMIMELHRGL  106 (182)
T ss_pred             chhHHHHcCCchhHHHHHHHHHHHHHHccHH---------HHHHHHhcC---CCCCCcccHH---HHH-HHHHHHHHHHH
Confidence            4556667899999999999999999886422         222111111   0000000000   000 01223334444


Q ss_pred             HHhc-CCCCHHHHHHHHHhHHHHHHhhCc----cchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccC
Q 006898          169 TQLC-QDDMPMVRRSAASNLGKFAATVEP----AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE  234 (626)
Q Consensus       169 ~~l~-~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~  234 (626)
                      ...+ .+.+..+-...++++..+++..+-    .++...++..+..++.+.|.++|..++.+++.+....+
T Consensus       107 l~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~  177 (182)
T PF13251_consen  107 LLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQP  177 (182)
T ss_pred             HHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCC
Confidence            4444 445677888899999999887653    45566677778888889999999999999998876543

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=96.70  E-value=0.24  Score=53.14  Aligned_cols=165  Identities=15%  Similarity=0.055  Sum_probs=93.2

Q ss_pred             hHHHHHHHhhcC----CCHHHHHHHHHhhHHHHhhhch------hhHHhhHHHHHHHH----hcCCChHHHHHHHHHHHH
Q 006898          358 QLLPIFLSLLKD----EFPDVRLNIISKLDQVNQVIGI------DLLSQSLLPAIVEL----AEDRHWRVRLAIIEYIPL  423 (626)
Q Consensus       358 ~l~~~l~~~l~d----~~~~vr~~a~~~L~~~~~~~~~------~~~~~~i~~~l~~~----~~~~~~~~r~~~~~~l~~  423 (626)
                      .++..+..++++    ..+.+|..++-+++.+....-.      ....+.+++.+.+.    .++.+...+..++.+++.
T Consensus       393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN  472 (574)
T smart00638      393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN  472 (574)
T ss_pred             HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence            344445555543    3567888888888877653211      11123444444433    344566677888888887


Q ss_pred             HHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcC--CChHHHHHHHHHHHH
Q 006898          424 LASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN--PHYLYRMTILRAISL  501 (626)
Q Consensus       424 l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~--~~~~vR~~a~~~l~~  501 (626)
                      ++.    ......+.|.+. .-.+....+|.+|+.+|..+......     .+.+.+.+.+.+  .+..+|.+|+..+-.
T Consensus       473 ~g~----~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~-----~v~~~l~~i~~n~~e~~EvRiaA~~~lm~  542 (574)
T smart00638      473 AGH----PSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPR-----KVQEVLLPIYLNRAEPPEVRMAAVLVLME  542 (574)
T ss_pred             cCC----hhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCch-----HHHHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence            542    222233444433 11234567999999999988765433     345556665554  467799999887764


Q ss_pred             hccccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHH
Q 006898          502 LAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVL  538 (626)
Q Consensus       502 i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l  538 (626)
                      .-   +.......+..   .+-.|++..|+......|
T Consensus       543 t~---P~~~~l~~ia~---~l~~E~~~QV~sfv~S~l  573 (574)
T smart00638      543 TK---PSVALLQRIAE---LLNKEPNLQVASFVYSHI  573 (574)
T ss_pred             cC---CCHHHHHHHHH---HHhhcCcHHHHHHhHHhh
Confidence            32   11212222222   233577788887665543

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=96.52  E-value=0.026  Score=42.82  Aligned_cols=80  Identities=24%  Similarity=0.298  Sum_probs=61.9

Q ss_pred             HHHHHhcCCCCHHHHHHHHHhHHHHHHhhC-ccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHH
Q 006898          166 SIYTQLCQDDMPMVRRSAASNLGKFAATVE-PAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP  244 (626)
Q Consensus       166 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~-~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~  244 (626)
                      ......+.|+.+.||..+...|..+...-. .....+.++..+...++|+++.|-.+|++++..++...+.+     ++|
T Consensus         6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~-----vl~   80 (92)
T PF10363_consen    6 QEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE-----VLP   80 (92)
T ss_pred             HHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH-----HHH
Confidence            344456688889999999999999988766 44556778899999999999999999999999998776542     455


Q ss_pred             HHHHhc
Q 006898          245 VIVNFS  250 (626)
Q Consensus       245 ~l~~~~  250 (626)
                      .+.+..
T Consensus        81 ~L~~~y   86 (92)
T PF10363_consen   81 ILLDEY   86 (92)
T ss_pred             HHHHHH
Confidence            554433

>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised

Probab=96.49  E-value=0.39  Score=48.88  Aligned_cols=94  Identities=17%  Similarity=0.114  Sum_probs=66.1

Q ss_pred             hHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChH--H--HHHHHHHHHHhcCCC
Q 006898          100 TCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--L--KTELRSIYTQLCQDD  175 (626)
Q Consensus       100 ~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~--~--~~~l~~~l~~l~~d~  175 (626)
                      -..|-.|+++|+.++..++........-+.+...+++.+...|..++-++.+.+......  .  .+.+.+.+...+.++
T Consensus       101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~  180 (441)
T PF12054_consen  101 IRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENP  180 (441)
T ss_pred             HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCC
Confidence            456889999999999999876666556667888888899999999999988877655431  1  245666666666633


Q ss_pred             C-----------HHHHHHHHHhHHHHHHh
Q 006898          176 M-----------PMVRRSAASNLGKFAAT  193 (626)
Q Consensus       176 ~-----------~~vR~~a~~~l~~l~~~  193 (626)
                      +           .++|..+-..+..+...
T Consensus       181 ~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~  209 (441)
T PF12054_consen  181 EPPYYDELVPSLKRLRTECQQLLATFRDV  209 (441)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2           25666665555555543

This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.

>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.47  E-value=0.24  Score=54.25  Aligned_cols=227  Identities=15%  Similarity=0.103  Sum_probs=130.7

Q ss_pred             HHHHHHHHHhccccccCC------cchhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhc-
Q 006898           63 VLLAMAEELGVFIPYVGG------VEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAA-  135 (626)
Q Consensus        63 vr~~~~~~l~~~~~~~~~------~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~-  135 (626)
                      +|......+++++..+..      ......++..+..+...+.-.+|+.|.-+.-.+...+-.         ...++.+ 
T Consensus       171 fr~~~~~fl~~lV~q~q~~s~l~d~~lmd~~is~LtamSdSqvR~fRhTaTl~~mklmt~Lv~---------va~~Ls~~  241 (1048)
T KOG2011|consen  171 FRENFCEFLPTLVSQCQYGSCLFDSFLMDDLISWLTAMSDSQVRAFRHTATLAAMKLMTALVS---------VALNLSSH  241 (1048)
T ss_pred             HHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHh
Confidence            455555666666554332      123455666677776666777888877666665544321         1111111 


Q ss_pred             ------------CCccchhHHHhhHhHHhcCCCC--hHHHHHHHHHHHHh--------cCCCCHHHHHHHHHhHHHHHHh
Q 006898          136 ------------GEWFTARVSACGLFHIAYPSAP--DILKTELRSIYTQL--------CQDDMPMVRRSAASNLGKFAAT  193 (626)
Q Consensus       136 ------------~~~~~~r~~a~~~l~~~~~~~~--~~~~~~l~~~l~~l--------~~d~~~~vR~~a~~~l~~l~~~  193 (626)
                                  .+....|..    +..+....+  .+.+.++..++..+        ..|-.+.+|..+++.||.++..
T Consensus       242 ~~~tskQleaEr~k~r~~rar----le~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~  317 (1048)
T KOG2011|consen  242 NDKTSKQLEAERNKSRGNRAR----LESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKS  317 (1048)
T ss_pred             hHHHHHHHHHHhcccccchHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHh
Confidence                        111111211    111111111  12233333333332        3588999999999999999999


Q ss_pred             hCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc----hhhhhhhHHHHHHhc-CCCCHHHHHHHHHHHHHH
Q 006898          194 VEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFS-QDKSWRVRYMVANQLYEL  268 (626)
Q Consensus       194 ~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~i~~~l~~~~-~d~~~~vR~~a~~~l~~l  268 (626)
                      .|.-.+..-.+.++--.++|.+..||..++++|..+.+.-..    +.+.+.+-.-+..++ .|.+..||......+...
T Consensus       318 yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~  397 (1048)
T KOG2011|consen  318 YPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLL  397 (1048)
T ss_pred             ccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH
Confidence            887555566777888889999999999999999999877221    223333333333333 666777887665544332


Q ss_pred             HHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHH
Q 006898          269 CEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVT  305 (626)
Q Consensus       269 ~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~  305 (626)
                      ..   .......-+..+..++-|.++.++.+|...+.
T Consensus       398 ~~---~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~  431 (1048)
T KOG2011|consen  398 SS---SGLLSDKDILIVYSLIYDSNRRVAVAAGEFLY  431 (1048)
T ss_pred             hc---ccccChhHHHHHHHHHhccCcchHHHHHHHHH
Confidence            21   11112223344567777888888888877664

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=96.41  E-value=0.045  Score=46.91  Aligned_cols=138  Identities=12%  Similarity=0.105  Sum_probs=81.6

Q ss_pred             HhhHHHHHHhcc-CCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhc-----CCCHHHHHHHHHhhHHHHhh---
Q 006898          318 QHILPCVKELSS-DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-----DEFPDVRLNIISKLDQVNQV---  388 (626)
Q Consensus       318 ~~l~~~l~~l~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~L~~~~~~---  388 (626)
                      +.+++.+.++++ +.+|.+|..+++++|.++..=+-.      .........     +.+........     ....   
T Consensus         9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~------~k~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~   77 (160)
T PF11865_consen    9 PELLDILLNILKTEQSQSIRREALRVLGILGALDPYK------HKSIQKSLDSKSSENSNDESTDISL-----PMMGISP   77 (160)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHH------HhcccccCCccccccccccchhhHH-----hhccCCC
Confidence            556666666544 456888888888888887431110      000111111     11111111111     1111   


Q ss_pred             hchhhHHhhHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Q 006898          389 IGIDLLSQSLLPAIVELAEDRH-WRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE  465 (626)
Q Consensus       389 ~~~~~~~~~i~~~l~~~~~~~~-~~~r~~~~~~l~~l~~~~~~~~--~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~  465 (626)
                      ...+.+...++..+.+.++|++ ...+..+++++..+.+.+|...  +.++++|.++..+.......|+....-|+.++.
T Consensus        78 ~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~  157 (160)
T PF11865_consen   78 SSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS  157 (160)
T ss_pred             chHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            2334445566777888888875 4455678888888887776554  457889999998887777888887777777765


Q ss_pred             H
Q 006898          466 E  466 (626)
Q Consensus       466 ~  466 (626)
                      .
T Consensus       158 i  158 (160)
T PF11865_consen  158 I  158 (160)
T ss_pred             H
Confidence            4

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=96.39  E-value=0.056  Score=41.08  Aligned_cols=82  Identities=18%  Similarity=0.109  Sum_probs=55.4

Q ss_pred             HHHHhcCCChHHHHHHHHHHHHHHHhhC-hhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHH
Q 006898          402 IVELAEDRHWRVRLAIIEYIPLLASQLG-VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV  480 (626)
Q Consensus       402 l~~~~~~~~~~~r~~~~~~l~~l~~~~~-~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l  480 (626)
                      ....++|+...+|..++..+..+...-. .....+.++.++...+.|++.-|=.+|++++..++...+.     .++|.+
T Consensus         8 al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~-----~vl~~L   82 (92)
T PF10363_consen    8 ALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD-----EVLPIL   82 (92)
T ss_pred             HHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH-----HHHHHH
Confidence            3344456666666666666666665544 3333466777888888888888888888888888877543     367777


Q ss_pred             HhhhcCCC
Q 006898          481 LEMINNPH  488 (626)
Q Consensus       481 ~~~l~~~~  488 (626)
                      .+.+.+.+
T Consensus        83 ~~~y~~~~   90 (92)
T PF10363_consen   83 LDEYADPS   90 (92)
T ss_pred             HHHHhCcc
Confidence            77665543

>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.36  E-value=1.1  Score=49.55  Aligned_cols=130  Identities=17%  Similarity=0.124  Sum_probs=98.7

Q ss_pred             hcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH---hCh-HHHhhhhHHHHH
Q 006898          406 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE---FGP-EWAMQHITPQVL  481 (626)
Q Consensus       406 ~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~---~~~-~~~~~~il~~l~  481 (626)
                      +.|-...+|..+++.++.+.+..+..++....+..+-+.|.|.+..||..++++|..+...   .+. ..+.+++-..+.
T Consensus       296 YRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIV  375 (1048)
T KOG2011|consen  296 YRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIV  375 (1048)
T ss_pred             cccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence            4678899999999999999999888888888889999999999999999999999999876   111 234577778888


Q ss_pred             hhh-cCCChHHHHHHHHHHHHhc--cccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHH
Q 006898          482 EMI-NNPHYLYRMTILRAISLLA--PVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS  540 (626)
Q Consensus       482 ~~l-~~~~~~vR~~a~~~l~~i~--~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~  540 (626)
                      ++. .|-+..||...+..+-...  ..++.     .-.-.+..++-|.++.++..|..-+..
T Consensus       376 eMadrd~~~~Vrav~L~~~~~~~~~g~L~d-----~di~~Vy~Li~d~~r~~~~aa~~fl~~  432 (1048)
T KOG2011|consen  376 EMADRDRNVSVRAVGLVLCLLLSSSGLLSD-----KDILIVYSLIYDSNRRVAVAAGEFLYK  432 (1048)
T ss_pred             HHHhhhcchhHHHHHHHHHHHHhcccccCh-----hHHHHHHHHHhccCcchHHHHHHHHHH
Confidence            877 5567888887777665442  22222     223345566778899998888777643

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=96.32  E-value=0.029  Score=48.29  Aligned_cols=68  Identities=18%  Similarity=0.141  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHH---HhhhhHHHHHhhhcCCChHHHHHHHHHHHHh
Q 006898          435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW---AMQHITPQVLEMINNPHYLYRMTILRAISLL  502 (626)
Q Consensus       435 ~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~---~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i  502 (626)
                      +.++|+++..+...+..-|-.|...+..+...-+.+.   ....+++.+...++..+..+...++.++..+
T Consensus        37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~L  107 (183)
T PF10274_consen   37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQL  107 (183)
T ss_pred             hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            5566666666666666666666666666666622221   1123333333334444555555555555544

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]

Probab=96.31  E-value=0.18  Score=55.56  Aligned_cols=175  Identities=11%  Similarity=0.041  Sum_probs=107.2

Q ss_pred             HHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcCCc
Q 006898          372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKV  449 (626)
Q Consensus       372 ~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~--~~~~~l~p~l~~~l~d~~  449 (626)
                      ..||.+++++|+.+.+......+ ...+..+.++...++|++|...+..+.........-  .+.+.+++.+...+.|.+
T Consensus       143 apVre~caq~L~~~l~~~~~s~~-~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~  221 (1549)
T KOG0392|consen  143 APVREACAQALGAYLKHMDESLI-KETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSD  221 (1549)
T ss_pred             hhhHHHHHHHHHHHHHhhhhHhh-HHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            57999999999999888766654 567778888888889999988777666544322111  233567788888999999


Q ss_pred             hHHHHHHHHHHHHHHHHhChH--HHhhhhHHHHHhhhc---CCCh---HHHHHHHHHHHHh-ccccChH-HhhhcHHHHH
Q 006898          450 YSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMIN---NPHY---LYRMTILRAISLL-APVMGSE-ITCSRLLPVV  519 (626)
Q Consensus       450 ~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~l~---~~~~---~vR~~a~~~l~~i-~~~~~~~-~~~~~~l~~l  519 (626)
                      ..||..|+..+..+....-..  .....++..+...+.   |-.+   ..|......+... ...+... .....+.|.+
T Consensus       222 ddv~~~aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~  301 (1549)
T KOG0392|consen  222 DDVRSVAAQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRL  301 (1549)
T ss_pred             hHHHHHHHHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhh
Confidence            999999999887776655111  111233333333221   1111   1221111111110 0000000 1112455666


Q ss_pred             hhhCCCCCchHHHHHHHHHHHHHhhhcc
Q 006898          520 INASKDRVPNIKFNVAKVLQSLIPIVDQ  547 (626)
Q Consensus       520 ~~~l~d~~~~vR~~a~~~l~~i~~~~~~  547 (626)
                      .-.+.+.-..+|..++..+..+.+.-+.
T Consensus       302 ~p~l~~~i~sv~~a~l~~l~~lle~~~q  329 (1549)
T KOG0392|consen  302 WPFLRHTISSVRRAALETLAMLLEADDQ  329 (1549)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            6667777788999999999988876543

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=96.28  E-value=0.92  Score=41.90  Aligned_cols=168  Identities=17%  Similarity=0.201  Sum_probs=101.9

Q ss_pred             HhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHH-
Q 006898          170 QLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVN-  248 (626)
Q Consensus       170 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~-  248 (626)
                      ++.+..++++.....+.|..++.+-.  ...+.++..+..+.+.+....+..+.+.+..+.+.-+.-  .+.+-+.+.. 
T Consensus         8 ~l~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~--f~~L~~~L~~~   83 (234)
T PF12530_consen    8 KLGKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRH--FPFLQPLLLLL   83 (234)
T ss_pred             HhcCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchH--HHHHHHHHHHH
Confidence            35566777777777777777776532  333445566666666666666556666666655443321  1222222222 


Q ss_pred             --------hcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc-CCChHHHHHHHHHhHHHHHHhh--ChHHHH
Q 006898          249 --------FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL-RDNEAEVRIAAAGKVTKFCRIL--NPELAI  317 (626)
Q Consensus       249 --------~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~--~~~~~~  317 (626)
                              .-.+..++...+.+.++..++...+.  ...++++.+...+ ++.++.++..+++++..+++.-  +....+
T Consensus        84 ~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w  161 (234)
T PF12530_consen   84 ILRIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAW  161 (234)
T ss_pred             HhhcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence                    12345677777777888888887665  3457888888889 7888889999999999998532  222223


Q ss_pred             HhhHHHHHHhccCCCHHHHHHHHHHHHhh
Q 006898          318 QHILPCVKELSSDSSQHVRSALASVIMGM  346 (626)
Q Consensus       318 ~~l~~~l~~l~~d~~~~vr~~~~~~l~~l  346 (626)
                      ..+.+.   +-.+..+.+-...++.+..+
T Consensus       162 ~vl~~~---l~~~~rp~v~~~l~~l~~l~  187 (234)
T PF12530_consen  162 KVLQKK---LSLDYRPLVLKSLCSLFALV  187 (234)
T ss_pred             HHHHHh---cCCccchHHHHHHHHHHHHh
Confidence            333333   33455566665555555443

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=96.28  E-value=0.78  Score=45.32  Aligned_cols=87  Identities=14%  Similarity=0.080  Sum_probs=57.1

Q ss_pred             hhHHHhhHhHHhcCCCChHHHHHHHHHHHHhc-CCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHH
Q 006898          141 ARVSACGLFHIAYPSAPDILKTELRSIYTQLC-QDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVR  219 (626)
Q Consensus       141 ~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~-~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr  219 (626)
                      .|...+.++..+.. .+  .-..+...+..++ ++.+.......+.+++.....+ .......++..+.+.++|..+.+|
T Consensus         3 ~r~~~~~~L~~l~~-~~--~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~-~~~~~~~~~~~~~kGl~~kk~~vR   78 (339)
T PF12074_consen    3 QRVLHASMLSSLPS-SS--LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL-SSELPKKVVDAFKKGLKDKKPPVR   78 (339)
T ss_pred             HHHHHHHHHHhCCC-cc--hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh-CcCCCHHHHHHHHHHhcCCCCcHH
Confidence            45555555555544 11  3344444444443 3566777888888888777766 334556788888888888888888


Q ss_pred             HHHHHHHHHhhc
Q 006898          220 LLAVEGCAALGK  231 (626)
Q Consensus       220 ~~a~~~l~~l~~  231 (626)
                      ..-+..++....
T Consensus        79 ~~w~~~~~~~~~   90 (339)
T PF12074_consen   79 RAWLLCLGEALW   90 (339)
T ss_pred             HHHHHHHHHHHh
Confidence            888888877665

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.26  E-value=3.5  Score=48.24  Aligned_cols=229  Identities=15%  Similarity=0.105  Sum_probs=142.5

Q ss_pred             hhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChH-HHHHHHHHHH-HhcCCCCHHHHHHHHHhHHHHHHhhCc-
Q 006898          120 SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELRSIYT-QLCQDDMPMVRRSAASNLGKFAATVEP-  196 (626)
Q Consensus       120 ~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~-~~~~l~~~l~-~l~~d~~~~vR~~a~~~l~~l~~~~~~-  196 (626)
                      +.++..-.-++...+...++..|..+...++.++...++. ....+...+. ++-+-.++.-|..-.-++|.+-+..|. 
T Consensus       871 e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~  950 (2067)
T KOG1822|consen  871 EEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSI  950 (2067)
T ss_pred             HHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCC
Confidence            3333333333444455566778888888888877666543 3444444444 444445666777777888888887765 


Q ss_pred             --cchhhhHHHHHHHhhcCCch-hHHHHHHHHHHHhhcccCchh--hhhhhHHHHHH-hcCCC--CHHHHHHHHHHHH--
Q 006898          197 --AHLKTDIMSIFEDLTQDDQD-SVRLLAVEGCAALGKLLEPQD--CVAHILPVIVN-FSQDK--SWRVRYMVANQLY--  266 (626)
Q Consensus       197 --~~~~~~ll~~l~~l~~d~~~-~vr~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~-~~~d~--~~~vR~~a~~~l~--  266 (626)
                        ......-+..+..+.+|+.+ .|+.-++.++.-+....++-.  +....+..+.. +++++  ..+|+...-.++.  
T Consensus       951 ~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~ 1030 (2067)
T KOG1822|consen  951 GSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGD 1030 (2067)
T ss_pred             CCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccc
Confidence              23333344577788888755 899999999998887776632  12222222222 34444  3445666556665  


Q ss_pred             ----HHHHHhCCCccccc-----------hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCC
Q 006898          267 ----ELCEAVGPEPTRMD-----------LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDS  331 (626)
Q Consensus       267 ----~l~~~~~~~~~~~~-----------l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~  331 (626)
                          .+....|++...+.           .+-...-++..+++.+..++++++..+.-.-+...-.+.+++.+..++..+
T Consensus      1031 ~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~~~l~s~ 1110 (2067)
T KOG1822|consen 1031 DDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLCSLLSSS 1110 (2067)
T ss_pred             hhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHHHHhcch
Confidence                77777776643221           111112233455788999999999988776666555577888888888877


Q ss_pred             CHHHHHHHHHHHHhhhh
Q 006898          332 SQHVRSALASVIMGMAP  348 (626)
Q Consensus       332 ~~~vr~~~~~~l~~l~~  348 (626)
                      .--.|.+...++..++.
T Consensus      1111 ~~i~r~~~~~clrql~~ 1127 (2067)
T KOG1822|consen 1111 YLILRRASFSCLRQLVQ 1127 (2067)
T ss_pred             hhhhhhhHHhhhhHHhH
Confidence            77777777777766653

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=96.21  E-value=1.6  Score=43.89  Aligned_cols=69  Identities=9%  Similarity=0.090  Sum_probs=50.4

Q ss_pred             hhHHHHHhhhc-CCChHHHHHHHHHHHHhccccChH-Hhhh--cHHHHHhhhCCCCCchHHHHHHHHHHHHHh
Q 006898          475 HITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSE-ITCS--RLLPVVINASKDRVPNIKFNVAKVLQSLIP  543 (626)
Q Consensus       475 ~il~~l~~~l~-~~~~~vR~~a~~~l~~i~~~~~~~-~~~~--~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~  543 (626)
                      .++..|.+++. ..++.+-..||.=+|.++++.+.. ...+  ..-..++.++++++++||..|+.++.++..
T Consensus       353 ~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  425 (429)
T cd00256         353 ELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV  425 (429)
T ss_pred             HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            45666666663 446777788889999999876432 2222  245567888999999999999999998854

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.18  E-value=0.38  Score=45.85  Aligned_cols=99  Identities=16%  Similarity=0.239  Sum_probs=69.6

Q ss_pred             cCccHHHHHHHHhhHHHHHHhhChHhh---hhhhccccccccCCchHHHHHHHHHHhccccccCCcchhh------cchH
Q 006898           19 KNDDIQLRLNSIRRLSTIARALGEERT---RKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAH------VLLP   89 (626)
Q Consensus        19 ~s~d~~~r~~a~~~l~~i~~~~~~~~~---~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~------~l~~   89 (626)
                      .+.+.+.|..|+..|......++....   ..-+.|.+..+.++++++|..++..+|..+.-  .+...+      .+-.
T Consensus        93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qN--NP~~Qe~v~E~~~L~~  170 (342)
T KOG2160|consen   93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQN--NPKSQEQVIELGALSK  170 (342)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhc--CHHHHHHHHHcccHHH
Confidence            577888899999888888776654321   22334555556788899999999999988763  222222      2233


Q ss_pred             HHhhhhcCcchHHHHHHHHHHHHHHhhcCh
Q 006898           90 PLETLCTVEETCVRDKAVESLCRIGSQMRE  119 (626)
Q Consensus        90 ~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~  119 (626)
                      ++..+.++++..+|..|.-+++.+.++.++
T Consensus       171 Ll~~ls~~~~~~~r~kaL~AissLIRn~~~  200 (342)
T KOG2160|consen  171 LLKILSSDDPNTVRTKALFAISSLIRNNKP  200 (342)
T ss_pred             HHHHHccCCCchHHHHHHHHHHHHHhcCcH
Confidence            455566777888899999999998888776

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=96.17  E-value=1  Score=41.66  Aligned_cols=55  Identities=18%  Similarity=0.210  Sum_probs=43.3

Q ss_pred             CCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhh-cCCchhHHHHHHHHHHHhh
Q 006898          174 DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT-QDDQDSVRLLAVEGCAALG  230 (626)
Q Consensus       174 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~-~d~~~~vr~~a~~~l~~l~  230 (626)
                      +..++...+.+.++..++...+.  ....+++.+...+ ++.++.++..+++.+..++
T Consensus        95 ~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc  150 (234)
T PF12530_consen   95 DEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLC  150 (234)
T ss_pred             cchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            44567777777778888877655  6677888888888 7778888999999998888

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]

Probab=96.03  E-value=2.5  Score=44.50  Aligned_cols=454  Identities=13%  Similarity=0.133  Sum_probs=226.5

Q ss_pred             chHHHHHHHHHHHHHHhhcChhhHH-HhHHHHHHHHhcCCccchhHHHhhHhHHhcC-CCChHHHHHHHHHHHHhc----
Q 006898           99 ETCVRDKAVESLCRIGSQMRESDLV-DWYIPLVKRLAAGEWFTARVSACGLFHIAYP-SAPDILKTELRSIYTQLC----  172 (626)
Q Consensus        99 ~~~vR~~a~~~l~~i~~~~~~~~~~-~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~-~~~~~~~~~l~~~l~~l~----  172 (626)
                      ++.+-..+.+++++..+.+.-.-+. +..++++.+.++  ....|.+||.++-++.. +..+..+-.+++.+...+    
T Consensus       206 npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg  283 (980)
T KOG2021|consen  206 NPGLINSCLDCIGSFVSWIDINLIANDYFLNLLYKFLN--IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFG  283 (980)
T ss_pred             CchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHh
Confidence            6666667777777766655443222 235666666555  35689999998887655 455555555555552211    


Q ss_pred             ---CC--CCHHHHHHHHHhHHHHHHh-------hCc-------cc---hhhhHHHHHHHhhcCCchhHHHHHHHHHHHhh
Q 006898          173 ---QD--DMPMVRRSAASNLGKFAAT-------VEP-------AH---LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG  230 (626)
Q Consensus       173 ---~d--~~~~vR~~a~~~l~~l~~~-------~~~-------~~---~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~  230 (626)
                         .|  .++++-....+.+..++..       ...       +.   ..-.++|++.+.+.|++++.-......+....
T Consensus       284 ~~s~dq~~d~df~e~vskLitg~gvel~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdyl  363 (980)
T KOG2021|consen  284 YHSADQMDDLDFWESVSKLITGFGVELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDYL  363 (980)
T ss_pred             hhccccccCchHHHHHHHHHhhcceeeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHH
Confidence               12  3344333332222222110       000       01   11236788888888888777666666555444


Q ss_pred             cccCc---------hhhhhhhHHHHHHhcCCC------C----------HHHHHHHHHHHHHHHHHhCCCccccchHHHH
Q 006898          231 KLLEP---------QDCVAHILPVIVNFSQDK------S----------WRVRYMVANQLYELCEAVGPEPTRMDLVPAY  285 (626)
Q Consensus       231 ~~~~~---------~~~~~~i~~~l~~~~~d~------~----------~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l  285 (626)
                      ..+.+         ......+...+++.+.|+      +          .++|...-.....++.. ..+.+...+-..+
T Consensus       364 ~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkLk~fqdti~~i-dpsl~l~~Ir~sl  442 (980)
T KOG2021|consen  364 AFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLKNFQDTIVVI-DPSLFLNNIRQSL  442 (980)
T ss_pred             HHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHH
Confidence            33322         112223344445544332      1          24565543333333322 1111112222222


Q ss_pred             ---HHhcCCChHHHHHHHHHhHHHHHHhhChH------------HHHHhhHHHHH--HhccCCCHHHHHHHHHHHHhhhh
Q 006898          286 ---VRLLRDNEAEVRIAAAGKVTKFCRILNPE------------LAIQHILPCVK--ELSSDSSQHVRSALASVIMGMAP  348 (626)
Q Consensus       286 ---~~~l~d~~~~vr~~a~~~l~~l~~~~~~~------------~~~~~l~~~l~--~l~~d~~~~vr~~~~~~l~~l~~  348 (626)
                         +...++++++.-+.|+..+-.+++.+..+            .+...+++.+.  +...++++.|.-...+.+....+
T Consensus       443 S~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~k  522 (980)
T KOG2021|consen  443 SAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNK  522 (980)
T ss_pred             HHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHH
Confidence               22334566888888998888888865422            12233444443  34567788887777777777655


Q ss_pred             hhcHHHHHHhHHHHHHHhh------cCCCHHHHHHHHHhhHHHHhhhchhh--HHhhHHHHHHHHhcCC----C------
Q 006898          349 LLGKDATIEQLLPIFLSLL------KDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDR----H------  410 (626)
Q Consensus       349 ~~~~~~~~~~l~~~l~~~l------~d~~~~vr~~a~~~L~~~~~~~~~~~--~~~~i~~~l~~~~~~~----~------  410 (626)
                      .+..+   .+-+|.++..+      .+.+..||..|.--+.++.+.+....  +.+.++..+..++..+    +      
T Consensus       523 ff~~e---sq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt~N~~s~~l  599 (980)
T KOG2021|consen  523 FFSTE---SQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTTINAQSDNL  599 (980)
T ss_pred             HHhcc---hhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCcCcccccc
Confidence            55432   12344444443      35678999988877777766544321  2344555554444111    1      


Q ss_pred             --hHHHHHHHHHHHHHHHh---------------hChhhHHHHHHHHHHHHhcCCchHHHH----HHHHHHHHHHHHhCh
Q 006898          411 --WRVRLAIIEYIPLLASQ---------------LGVGFFDDKLGALCMQWLQDKVYSIRD----AAANNLKRLAEEFGP  469 (626)
Q Consensus       411 --~~~r~~~~~~l~~l~~~---------------~~~~~~~~~l~p~l~~~l~d~~~~VR~----~a~~~l~~l~~~~~~  469 (626)
                        ..-..-..+.++-+...               ..+-.....+.+....+-+|.+..|..    .++.+++.+.+.+..
T Consensus       600 t~fddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~  679 (980)
T KOG2021|consen  600 TIFDDQLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHI  679 (980)
T ss_pred             ccccccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccc
Confidence              00011111122211110               011111122233333344565555543    344566777665422


Q ss_pred             H----------HHhhhhHHHHHhhhcC--CChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHHHHHHH
Q 006898          470 E----------WAMQHITPQVLEMINN--PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKV  537 (626)
Q Consensus       470 ~----------~~~~~il~~l~~~l~~--~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~  537 (626)
                      .          .....++..+...+..  ....+|.+.-..+++++..+|++ ..+.+-..+..+++|.++.--..-...
T Consensus       680 rlvt~~qvg~~~vf~~~ldvil~~ls~f~k~E~iRsavrft~hRmI~~lg~~-vlPfipklie~lL~s~d~kEmvdfl~f  758 (980)
T KOG2021|consen  680 RLVTENQVGNMVVFSNILDVILVTLSFFNKFENIRSAVRFTFHRMIPILGNK-VLPFIPKLIELLLSSTDLKEMVDFLGF  758 (980)
T ss_pred             cCcchhcccHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhcchh-hhcchHHHHHHHHhcCCHHHHHHHHHH
Confidence            1          1123333333333322  34567888888888888888866 233333334445677777655555666


Q ss_pred             HHHHHhhhccc--hhhhcccchHH
Q 006898          538 LQSLIPIVDQS--VSTFSVSPFSF  559 (626)
Q Consensus       538 l~~i~~~~~~~--~~~~~i~~~l~  559 (626)
                      |..++..+..+  .+.+.++|.|.
T Consensus       759 lsQLihkfk~~~~~ilnqmlppll  782 (980)
T KOG2021|consen  759 LSQLIHKFKTDCYQILNQMLPPLL  782 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666665543  33444555444

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.95  E-value=1.4  Score=41.07  Aligned_cols=49  Identities=14%  Similarity=0.075  Sum_probs=35.2

Q ss_pred             CCCCchHHHHHHHHHHHHHhhhccc--hhhhcccchHHhhhccCCCccccc
Q 006898          524 KDRVPNIKFNVAKVLQSLIPIVDQS--VSTFSVSPFSFMLYLNVNNFNVGF  572 (626)
Q Consensus       524 ~d~~~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~~l~~d~d~~vr~  572 (626)
                      .++++.+|.....+|-.+...-...  .....+.|++..-....+|++++.
T Consensus       254 RepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~  304 (353)
T KOG2973|consen  254 REPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDIRE  304 (353)
T ss_pred             CCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHH
Confidence            5888999999999998876554332  334567788883336677888887

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=95.87  E-value=1.2  Score=43.42  Aligned_cols=186  Identities=13%  Similarity=0.160  Sum_probs=116.7

Q ss_pred             HHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhh-ch------hhH--H-hhHHHHHHHHhcCCChHHHHHHHHHHH
Q 006898          353 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GI------DLL--S-QSLLPAIVELAEDRHWRVRLAIIEYIP  422 (626)
Q Consensus       353 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~-~~------~~~--~-~~i~~~l~~~~~~~~~~~r~~~~~~l~  422 (626)
                      +.+...+++.+...+..-+.+.|+.+...++.+...- +.      +.+  . ..++..+....++++...-      .+
T Consensus        71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~------~g  144 (335)
T PF08569_consen   71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALN------CG  144 (335)
T ss_dssp             HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHH------HH
T ss_pred             HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccch------HH
Confidence            3445577778888888888888888887777665432 11      111  1 3466667776666653221      11


Q ss_pred             HHHHhh-ChhhHH-----HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh---HH---HhhhhHHHHHhhhcCCChH
Q 006898          423 LLASQL-GVGFFD-----DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EW---AMQHITPQVLEMINNPHYL  490 (626)
Q Consensus       423 ~l~~~~-~~~~~~-----~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~---~~---~~~~il~~l~~~l~~~~~~  490 (626)
                      .+...+ .-+.+.     +..+..++...+.++.+|-.-|..++..+......   ++   ..+.++.....++.++|+-
T Consensus       145 ~mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYv  224 (335)
T PF08569_consen  145 DMLRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYV  224 (335)
T ss_dssp             HHHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHH
T ss_pred             HHHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeE
Confidence            111111 111111     11222366778889999999999888887654321   11   1356777788899999999


Q ss_pred             HHHHHHHHHHHhccccChHHh------hhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhh
Q 006898          491 YRMTILRAISLLAPVMGSEIT------CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI  544 (626)
Q Consensus       491 vR~~a~~~l~~i~~~~~~~~~------~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~  544 (626)
                      +|..++..+|.+...-....+      ...-+..++.+++|+..++|..|..++..+...
T Consensus       225 tkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN  284 (335)
T PF08569_consen  225 TKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN  284 (335)
T ss_dssp             HHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred             eehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence            999999999998753222111      245777888899999999999999999987655

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=95.85  E-value=6.8  Score=48.10  Aligned_cols=244  Identities=17%  Similarity=0.154  Sum_probs=135.4

Q ss_pred             HhcCccHHHHHHHHhhHHHHHHhhCh------H--hhhhhhcccccc--ccCCchHHHHHHHHHHh-ccccccCCcchhh
Q 006898           17 ELKNDDIQLRLNSIRRLSTIARALGE------E--RTRKELIPFLSE--NNDDDDEVLLAMAEELG-VFIPYVGGVEHAH   85 (626)
Q Consensus        17 ~l~s~d~~~r~~a~~~l~~i~~~~~~------~--~~~~~l~~~l~~--~~~~~~~vr~~~~~~l~-~~~~~~~~~~~~~   85 (626)
                      .....|...|..+...+..+....-.      .  ++...++..+..  ..+.++.+|......+. .+.+....+    
T Consensus       489 ~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~~~~~~~laQ~----  564 (2341)
T KOG0891|consen  489 YLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLNERFDAQLAQP----  564 (2341)
T ss_pred             HHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhccchhhhhcCc----
Confidence            34567778888887666666443221      0  113333333333  45777888877777665 222222222    


Q ss_pred             cchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHH----HhcCC----ccchhHHHhhHhHHhcCCCC
Q 006898           86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKR----LAAGE----WFTARVSACGLFHIAYPSAP  157 (626)
Q Consensus        86 ~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~----l~~~~----~~~~r~~a~~~l~~~~~~~~  157 (626)
                      ..+..+.....++.-.++..+...++.++..-+     .+++|.+..    ..+.-    ...+....+..+..+.....
T Consensus       565 ~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~-----a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~  639 (2341)
T KOG0891|consen  565 DLLRLLFIALHDENFAIQELATVIIGRLSSYNP-----AYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSP  639 (2341)
T ss_pred             hhHHHHHHHhhhhhhhhHHhHHhhccccccccH-----HHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHH
Confidence            233333344456677788888877777766444     223333322    11111    11122233333333222221


Q ss_pred             ---hHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc--cchhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhhc
Q 006898          158 ---DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQ-DSVRLLAVEGCAALGK  231 (626)
Q Consensus       158 ---~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~l~~d~~-~~vr~~a~~~l~~l~~  231 (626)
                         ..+...++..+...+.+.+..+-+.+..+++.++...|.  ..+...+++.+.+.+.|.. ..-|.++...++.+.+
T Consensus       640 ~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s  719 (2341)
T KOG0891|consen  640 VLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLES  719 (2341)
T ss_pred             HHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhc
Confidence               124455556666677888889999999999999998873  2333467777777776653 4567788888888876


Q ss_pred             ccCc----hhhhhhhHHHHH-HhcCCCCHHHHHHHHHHHHHHH
Q 006898          232 LLEP----QDCVAHILPVIV-NFSQDKSWRVRYMVANQLYELC  269 (626)
Q Consensus       232 ~~~~----~~~~~~i~~~l~-~~~~d~~~~vR~~a~~~l~~l~  269 (626)
                      ..+-    -...+.++..+. .....-...+|..+.+.++..+
T Consensus       720 ~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g  762 (2341)
T KOG0891|consen  720 STGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLG  762 (2341)
T ss_pred             ccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhc
Confidence            5432    112333444433 3334445667888888777443

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=95.81  E-value=0.23  Score=42.89  Aligned_cols=75  Identities=16%  Similarity=0.082  Sum_probs=61.4

Q ss_pred             hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHH---HHHHHHHHHHhcCCchHHHHHHHHHHHHH---HHHhCh
Q 006898          396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD---DKLGALCMQWLQDKVYSIRDAAANNLKRL---AEEFGP  469 (626)
Q Consensus       396 ~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~---~~l~p~l~~~l~d~~~~VR~~a~~~l~~l---~~~~~~  469 (626)
                      +.++|.+.+-+.+.....|..|.+.+..+.+.-+.+.+.   +++++.+-..++.++++|..++.++|..+   ....|+
T Consensus        37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~  116 (183)
T PF10274_consen   37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE  116 (183)
T ss_pred             hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH
Confidence            778999999999999999999999999999884443333   45566677789999999999999999999   455565


Q ss_pred             H
Q 006898          470 E  470 (626)
Q Consensus       470 ~  470 (626)
                      .
T Consensus       117 a  117 (183)
T PF10274_consen  117 A  117 (183)
T ss_pred             H
Confidence            4

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.63  E-value=3.8  Score=43.52  Aligned_cols=211  Identities=12%  Similarity=0.138  Sum_probs=121.1

Q ss_pred             hhhccccccccCCchHHHHHHHHHHhccccccCCcchhhcchHHHhhhhcCc-chHHHHHHHHHHHHHHhhcC--hhhHH
Q 006898           47 KELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVE-ETCVRDKAVESLCRIGSQMR--ESDLV  123 (626)
Q Consensus        47 ~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~-~~~vR~~a~~~l~~i~~~~~--~~~~~  123 (626)
                      +.++|-+....+..--+|+.++-.+|.++..--..+....+.-.+.+++.|. |.-||-+++++++.....+.  ++.+.
T Consensus       487 ~~llpEl~~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFl  566 (978)
T KOG1993|consen  487 EALLPELANDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFL  566 (978)
T ss_pred             HhhCHHhhhcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhh
Confidence            3444444422223335788888899988763222233444455577788776 66789999999999888653  22222


Q ss_pred             HhH---HHHHHHHhcC-CccchhHHHhhHhHHhcCCCChH---HHHHHH---HHHHHhcCCCCHHHHHHHHHhHHHHHHh
Q 006898          124 DWY---IPLVKRLAAG-EWFTARVSACGLFHIAYPSAPDI---LKTELR---SIYTQLCQDDMPMVRRSAASNLGKFAAT  193 (626)
Q Consensus       124 ~~l---~~~l~~l~~~-~~~~~r~~a~~~l~~~~~~~~~~---~~~~l~---~~l~~l~~d~~~~vR~~a~~~l~~l~~~  193 (626)
                      +++   --.+..+... ..-..|......++.+..+.++.   +...++   |.+.+..+ +.+-.|.+.+..+.+++..
T Consensus       567 p~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~-~e~lLr~alL~~L~~lV~a  645 (978)
T KOG1993|consen  567 PYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESE-EEPLLRCALLATLRNLVNA  645 (978)
T ss_pred             hhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc-cCcHHHHHHHHHHHHHHHH
Confidence            221   1111222221 23456777777777777666543   333333   44443333 4577999999999999999


Q ss_pred             hCcc--chhhhHHHHHHHhhcCCchh---HHHHHHHHHHHhhcccCc-hhhhhhhHHHHHHhcCCCCHHHH
Q 006898          194 VEPA--HLKTDIMSIFEDLTQDDQDS---VRLLAVEGCAALGKLLEP-QDCVAHILPVIVNFSQDKSWRVR  258 (626)
Q Consensus       194 ~~~~--~~~~~ll~~l~~l~~d~~~~---vr~~a~~~l~~l~~~~~~-~~~~~~i~~~l~~~~~d~~~~vR  258 (626)
                      +|.+  ..++-++|.+....+-+.|+   .-+-+.+.+..+....+. .+..-.+.|.+...++-.+...|
T Consensus       646 lg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll~L~p~l~~~iE~ste~L~  716 (978)
T KOG1993|consen  646 LGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELLLLFPHLLYIIEQSTENLP  716 (978)
T ss_pred             hccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHHHHHHHHHHHHHhhhhhHH
Confidence            8863  45666777766554444443   334566666666655544 22233455555555443333333

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=95.60  E-value=0.34  Score=47.59  Aligned_cols=131  Identities=21%  Similarity=0.306  Sum_probs=80.2

Q ss_pred             hcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCC-------ChHHHHHHHHHHHHHHHh--hChhhHHHHH
Q 006898          367 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-------HWRVRLAIIEYIPLLASQ--LGVGFFDDKL  437 (626)
Q Consensus       367 l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~-------~~~~r~~~~~~l~~l~~~--~~~~~~~~~l  437 (626)
                      +.+.+...|..|+..|..=.   |    ...++|.+..++.+.       ++..-...++.+..+...  +..+.+...+
T Consensus       187 ~~~~~~~~r~~aL~sL~tD~---g----l~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~L  259 (343)
T cd08050         187 LVGSNEEKRREALQSLRTDP---G----LQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQL  259 (343)
T ss_pred             HhCCCHHHHHHHHHHhccCC---C----chhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHH
Confidence            33455666666665554311   1    145666665554321       344444444444444432  2234455668


Q ss_pred             HHHHHHHh----------cCCchHHHHHHHHHHHHHHHHhChH--HHhhhhHHHHHhhhcCCC--hHHHHHHHHHHHHhc
Q 006898          438 GALCMQWL----------QDKVYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMINNPH--YLYRMTILRAISLLA  503 (626)
Q Consensus       438 ~p~l~~~l----------~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~l~~~~--~~vR~~a~~~l~~i~  503 (626)
                      +|.++.++          .+..+.+|..|+..++.++..++..  ....+++..+.+.+.|++  .....+|+.++..++
T Consensus       260 ip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~lG  339 (343)
T cd08050         260 IPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSALG  339 (343)
T ss_pred             HHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHhC
Confidence            88877765          3567899999999999999998865  355677777777666653  445788888888765


Q ss_pred             c
Q 006898          504 P  504 (626)
Q Consensus       504 ~  504 (626)
                      .
T Consensus       340 ~  340 (343)
T cd08050         340 P  340 (343)
T ss_pred             c
Confidence            3

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=95.56  E-value=3  Score=41.94  Aligned_cols=194  Identities=13%  Similarity=0.136  Sum_probs=93.9

Q ss_pred             HHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 006898          106 AVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAAS  185 (626)
Q Consensus       106 a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~  185 (626)
                      .+.++-.+.....+.+..++++-++..++.++...++.     |...... .    ++....++.+++.+++-+...++.
T Consensus        54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~-----f~~~~~~-~----~~~~~~fl~lL~~~d~~i~~~a~~  123 (429)
T cd00256          54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKL-----FHDDALL-K----KKTWEPFFNLLNRQDQFIVHMSFS  123 (429)
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHH-----HHHHhhc-c----ccchHHHHHHHcCCchhHHHHHHH
Confidence            44444455555566666677777777666654221211     1111100 1    112233334666778889999999


Q ss_pred             hHHHHHHhhCcc---chhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhhcccCch-hh-hhhhHHHHHHhcCCC--CHHH
Q 006898          186 NLGKFAATVEPA---HLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQ-DC-VAHILPVIVNFSQDK--SWRV  257 (626)
Q Consensus       186 ~l~~l~~~~~~~---~~~~~ll~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~-~~-~~~i~~~l~~~~~d~--~~~v  257 (626)
                      .+..++..-...   .....+.+.+...+..+ +...+..++.++..+...-.-. .+ ....++.+...++..  +...
T Consensus       124 iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql  203 (429)
T cd00256         124 ILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQL  203 (429)
T ss_pred             HHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHH
Confidence            998887643221   12233445555555543 3455666777887766443221 11 122344444444322  3344


Q ss_pred             HHHHHHHHHHHHHHh-C-CCccccchHHHHHHhcCCCh-HHHHHHHHHhHHHHHH
Q 006898          258 RYMVANQLYELCEAV-G-PEPTRMDLVPAYVRLLRDNE-AEVRIAAAGKVTKFCR  309 (626)
Q Consensus       258 R~~a~~~l~~l~~~~-~-~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~  309 (626)
                      .+.++-++-.+.-.- + .......+++.+...+++.. ..|-+-++.++..+..
T Consensus       204 ~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~  258 (429)
T cd00256         204 QYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS  258 (429)
T ss_pred             HHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence            455544443332110 0 01112357777777766543 2333444444444444

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=95.54  E-value=2.9  Score=41.56  Aligned_cols=225  Identities=15%  Similarity=0.108  Sum_probs=129.4

Q ss_pred             hHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcH-HHHHH-hHHHHHHHhh-cC-CCHHHHHHHHHhhHHHHhhh-chhhH
Q 006898          320 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGK-DATIE-QLLPIFLSLL-KD-EFPDVRLNIISKLDQVNQVI-GIDLL  394 (626)
Q Consensus       320 l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~-~~~~~-~l~~~l~~~l-~d-~~~~vr~~a~~~L~~~~~~~-~~~~~  394 (626)
                      ..+.+..++-+++..||.++.+.+..+...... ..+.+ ++--.+...| +| ....=|..|++-+..+.+.- |.+.+
T Consensus        26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~  105 (371)
T PF14664_consen   26 FGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEI  105 (371)
T ss_pred             HHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccC
Confidence            344444333333488999998888766543211 11111 1111122233 33 34456788888888887763 45555


Q ss_pred             HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChH----
Q 006898          395 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE----  470 (626)
Q Consensus       395 ~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~----  470 (626)
                      ...++..+..+.++++.+.|..+++.+..++-....-.+...-+..+.+.+.|....+-...+.++-.+.+.-...    
T Consensus       106 ~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~  185 (371)
T PF14664_consen  106 PRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLR  185 (371)
T ss_pred             CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhc
Confidence            5678888999999999999999999999887543332223233455666666665555555554444443321111    


Q ss_pred             --HHhhhhHHHHHhhh---cCCCh--HHHHHHHHHHHHhccccChHHh----hhcHHHHHhhhCCCCCchHHHHHHHHHH
Q 006898          471 --WAMQHITPQVLEMI---NNPHY--LYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKDRVPNIKFNVAKVLQ  539 (626)
Q Consensus       471 --~~~~~il~~l~~~l---~~~~~--~vR~~a~~~l~~i~~~~~~~~~----~~~~l~~l~~~l~d~~~~vR~~a~~~l~  539 (626)
                        .-.+.++..+.+.-   ..++.  ..-..+..++..+.+....-.+    ...-+..+...+.-+++++|....+.+-
T Consensus       186 ~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~  265 (371)
T PF14664_consen  186 PGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLF  265 (371)
T ss_pred             CCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence              11122333333320   11122  2445666677777765443211    0156777888888999999999999999


Q ss_pred             HHHhh
Q 006898          540 SLIPI  544 (626)
Q Consensus       540 ~i~~~  544 (626)
                      .+...
T Consensus       266 dllri  270 (371)
T PF14664_consen  266 DLLRI  270 (371)
T ss_pred             HHHCC
Confidence            88764

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=95.49  E-value=2.7  Score=42.55  Aligned_cols=251  Identities=10%  Similarity=0.050  Sum_probs=141.9

Q ss_pred             cCCCHHHHHHHHHHHHhhhhhhcHHH----HHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchh--hHHhhHHHHH
Q 006898          329 SDSSQHVRSALASVIMGMAPLLGKDA----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAI  402 (626)
Q Consensus       329 ~d~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~--~~~~~i~~~l  402 (626)
                      .+++|..-+.+.+.+..+......+.    +...++..++.++..+|+.-|......+..+...+...  .+...+...+
T Consensus       100 ~e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~  179 (409)
T PF01603_consen  100 LEPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIF  179 (409)
T ss_dssp             --TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHH
T ss_pred             cccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            45677766777777766665544333    45567777888888888888888888887766544321  2223344445


Q ss_pred             HHHhcC-CChHHHHHHHHHHHHHHHhhC---hhhHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHHHHHhChHHHhhhhH
Q 006898          403 VELAED-RHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYS-IRDAAANNLKRLAEEFGPEWAMQHIT  477 (626)
Q Consensus       403 ~~~~~~-~~~~~r~~~~~~l~~l~~~~~---~~~~~~~l~p~l~~~l~d~~~~-VR~~a~~~l~~l~~~~~~~~~~~~il  477 (626)
                      .+...+ ....--..+++.++.+.+++.   ++.....+...++.+...+... ....-..|+..++..- + .....++
T Consensus       180 ~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kd-p-~l~~~~i  257 (409)
T PF01603_consen  180 YRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKD-P-SLAEPVI  257 (409)
T ss_dssp             HHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH--G-GGHHHHH
T ss_pred             HHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC-c-hhHHHHH
Confidence            555443 334445567788888887765   2333344444555554444332 2444555555555431 1 1334455


Q ss_pred             HHHHhhhcCCChHHHHHHHHHHHHhccccChHHh---hhcHHHHHhhhCCCCCchHHHHHHHHHHH--HHhhhcc--chh
Q 006898          478 PQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT---CSRLLPVVINASKDRVPNIKFNVAKVLQS--LIPIVDQ--SVS  550 (626)
Q Consensus       478 ~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~---~~~~l~~l~~~l~d~~~~vR~~a~~~l~~--i~~~~~~--~~~  550 (626)
                      ..+.+.---.+..-....+.-+..+.+.++++.+   ...+...+..+++.+...|-..|+..+.+  +...+..  ...
T Consensus       258 ~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~~~i  337 (409)
T PF01603_consen  258 KGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQNSRVI  337 (409)
T ss_dssp             HHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTHHHH
T ss_pred             HHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhChHHH
Confidence            5555555556777788888889999888887654   34566677778889999998888877743  2333322  123


Q ss_pred             hhcccchHHhhhc-cCCCcccccccccCchhHHHHHHHHHHH
Q 006898          551 TFSVSPFSFMLYL-NVNNFNVGFIFAAFPLVLFSCLALNYCH  591 (626)
Q Consensus       551 ~~~i~~~l~~~l~-~d~d~~vr~~~~~~~~~~~a~~al~~~~  591 (626)
                      .+.+.|.|. +.. +.=+..||.         .|..++..+.
T Consensus       338 ~p~i~~~L~-~~~~~HWn~~Vr~---------~a~~vl~~l~  369 (409)
T PF01603_consen  338 LPIIFPALY-RNSKNHWNQTVRN---------LAQNVLKILM  369 (409)
T ss_dssp             HHHHHHHHS-STTSS-SSTTHHH---------HHHHHHHHHH
T ss_pred             HHHHHHHHH-HHHHHHhhHHHHH---------HHHHHHHHHH
Confidence            344555555 332 333677888         7777766653

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.33  E-value=2.7  Score=40.33  Aligned_cols=173  Identities=12%  Similarity=0.060  Sum_probs=100.4

Q ss_pred             CCHHHHHHHHHhHHHHHHhhCcc--chhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCch---hhhhhhHH-HHHH
Q 006898          175 DMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILP-VIVN  248 (626)
Q Consensus       175 ~~~~vR~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~i~~-~l~~  248 (626)
                      .+.+=|..+..-|..+++.+...  ......+..+..++++.+..+|..|...++...+..++.   .+....++ .+..
T Consensus        95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~  174 (342)
T KOG2160|consen   95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI  174 (342)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence            45667777888888888776542  112223334444888899999999999999888877762   12222333 3344


Q ss_pred             hcCCCCHHHHHHHHHHHHHHHHHhCCC---ccccchHHHHHHhcCC--ChHHHHHHHHHhHHHHHHhhChH--HHHHhhH
Q 006898          249 FSQDKSWRVRYMVANQLYELCEAVGPE---PTRMDLVPAYVRLLRD--NEAEVRIAAAGKVTKFCRILNPE--LAIQHIL  321 (626)
Q Consensus       249 ~~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~  321 (626)
                      +..|.+..+|..+..+++.+.+....-   +..-.=...+...+++  .+...+..++..+..+.+.-..+  ......+
T Consensus       175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f  254 (342)
T KOG2160|consen  175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF  254 (342)
T ss_pred             HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence            556777888888888888887764321   1111224455566665  44556666777777666533222  1112222


Q ss_pred             HH-HHHhccCCCHHHHHHHHHHHHhhh
Q 006898          322 PC-VKELSSDSSQHVRSALASVIMGMA  347 (626)
Q Consensus       322 ~~-l~~l~~d~~~~vr~~~~~~l~~l~  347 (626)
                      +. +..+...-++.++..+...+..+.
T Consensus       255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l  281 (342)
T KOG2160|consen  255 QRVLENLISSLDFEVNEAALTALLSLL  281 (342)
T ss_pred             hHHHHHHhhccchhhhHHHHHHHHHHH
Confidence            22 233445555666666655444433

>KOG1851 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.31  E-value=7.3  Score=44.86  Aligned_cols=156  Identities=13%  Similarity=0.122  Sum_probs=93.7

Q ss_pred             HHHHhhHHHHHHh-ccCCCHHHHHHHHHHHHhhh--hhhc-HHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhc
Q 006898          315 LAIQHILPCVKEL-SSDSSQHVRSALASVIMGMA--PLLG-KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG  390 (626)
Q Consensus       315 ~~~~~l~~~l~~l-~~d~~~~vr~~~~~~l~~l~--~~~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~  390 (626)
                      .....++..+..+ ..+.+|++|.++++.+....  ..|+ .+...+.+...+.+.+.|.+-.||+.|+.+|+.+...--
T Consensus      1522 ~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~ 1601 (1710)
T KOG1851|consen 1522 HLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSK 1601 (1710)
T ss_pred             hhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhccc
Confidence            3445666666643 45578999999888776543  3344 334456788889999999999999999999998865421


Q ss_pred             hhhHHhhHHHHHHHH-hcCCChHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Q 006898          391 IDLLSQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF  467 (626)
Q Consensus       391 ~~~~~~~i~~~l~~~-~~~~~~~~r~~~~~~l~~l~~~~~~~~--~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~  467 (626)
                      .....+..-+..... ....+...+..++..+++++-.++-..  +..+.+..+-....++ ..++.++-+++...-...
T Consensus      1602 ~~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrth 1680 (1710)
T KOG1851|consen 1602 FQFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRTH 1680 (1710)
T ss_pred             cccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHh
Confidence            111111111111111 123345556667777887776554211  2222333333334444 678888888888877766


Q ss_pred             ChHH
Q 006898          468 GPEW  471 (626)
Q Consensus       468 ~~~~  471 (626)
                      ..+|
T Consensus      1681 ~D~W 1684 (1710)
T KOG1851|consen 1681 ADTW 1684 (1710)
T ss_pred             hhhh
Confidence            5554

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=95.21  E-value=3.8  Score=40.97  Aligned_cols=189  Identities=10%  Similarity=0.064  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHhhhhhhcHHH--HHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCC
Q 006898          333 QHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRH  410 (626)
Q Consensus       333 ~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~  410 (626)
                      ..+-...+.++..+...++...  .....+|.++..+-+....+|..|...+..+...++++......+....+....+.
T Consensus       148 ~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~  227 (372)
T PF12231_consen  148 KSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG  227 (372)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc
Confidence            3344444445555554444322  23457788888777888899998887777776666665432222222111111111


Q ss_pred             hHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChH-----HHhhhhHHHHHhhhc
Q 006898          411 WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE-----WAMQHITPQVLEMIN  485 (626)
Q Consensus       411 ~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~-----~~~~~il~~l~~~l~  485 (626)
                       .+-..                    +.+.+..++.++..  -..+...++.+...+|..     ...+..+......++
T Consensus       228 -~~~~~--------------------~~~~L~~mi~~~~~--~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn  284 (372)
T PF12231_consen  228 -KLIQL--------------------YCERLKEMIKSKDE--YKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFN  284 (372)
T ss_pred             -cHHHH--------------------HHHHHHHHHhCcCC--cchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhc
Confidence             22222                    22333333333111  112333333333333321     123455555666788


Q ss_pred             CCChHHHHHHHHHHHHhccccChHH-----hhh-cHHHHHhhhCCCCCc----hHHHHHHHHHHHHHhh
Q 006898          486 NPHYLYRMTILRAISLLAPVMGSEI-----TCS-RLLPVVINASKDRVP----NIKFNVAKVLQSLIPI  544 (626)
Q Consensus       486 ~~~~~vR~~a~~~l~~i~~~~~~~~-----~~~-~~l~~l~~~l~d~~~----~vR~~a~~~l~~i~~~  544 (626)
                      ++++.+|..|..+...++.....+.     ... -..|....+-....+    .+|..+...++.+...
T Consensus       285 ~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~  353 (372)
T PF12231_consen  285 SSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYY  353 (372)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchHHH
Confidence            8888888888888887765333221     111 223444433334444    7888888888877644

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=94.98  E-value=5.5  Score=41.64  Aligned_cols=106  Identities=12%  Similarity=0.051  Sum_probs=85.5

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccc--------hhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc-
Q 006898          165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH--------LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-  235 (626)
Q Consensus       165 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~--------~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-  235 (626)
                      ...+.+++++++...|-...+++++++..+..+.        ..+.++..+.+-+.|.+|.+|..|++.+..+.+.-.+ 
T Consensus       301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~  380 (1128)
T COG5098         301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT  380 (1128)
T ss_pred             HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence            3456678899999999999999999998876543        2345777888889999999999999999998876554 


Q ss_pred             hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006898          236 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCE  270 (626)
Q Consensus       236 ~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~  270 (626)
                      ......+.....+.+.|.+..||+.+++.++.+..
T Consensus       381 ~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~  415 (1128)
T COG5098         381 VGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLM  415 (1128)
T ss_pred             cchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence            22356677888888999999999999998887754

>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans)

Probab=94.77  E-value=4.1  Score=39.10  Aligned_cols=179  Identities=17%  Similarity=0.146  Sum_probs=125.0

Q ss_pred             HHHHHHHhhcCC-CHHHHHHHHHhhHHHHhhhchhhHHhh---HHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHH
Q 006898          359 LLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGIDLLSQS---LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD  434 (626)
Q Consensus       359 l~~~l~~~l~d~-~~~vr~~a~~~L~~~~~~~~~~~~~~~---i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~  434 (626)
                      +...+.++|+-. -..|...|++....+.+.+|++.+.+.   ..|-+..++...+-.+|-..+..+....-.+|+ ...
T Consensus        55 v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~  133 (307)
T PF04118_consen   55 VSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALR  133 (307)
T ss_pred             HHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHH
Confidence            344455666532 357888999999999998888876543   345566666777778888888888887666666 333


Q ss_pred             ---HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccC----
Q 006898          435 ---DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG----  507 (626)
Q Consensus       435 ---~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~----  507 (626)
                         ..++..++..+.|+..++-..+...+..+...++.+.+...+.-.+.     .++..|..|+..+..-.....    
T Consensus       134 p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l~~~~~~~~  208 (307)
T PF04118_consen  134 PCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII-----TSPSRRLGALNYLLRRLPKFQNDEL  208 (307)
T ss_pred             HHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh-----cCcchhHHHHHHHHHhCCccccccc
Confidence               33444556667899999999999999999999988744443333333     567789999988876554433    


Q ss_pred             --h-H---Hh----hhcHHHHHhhhCCCCCchHHHHHHHHHHHHHh
Q 006898          508 --S-E---IT----CSRLLPVVINASKDRVPNIKFNVAKVLQSLIP  543 (626)
Q Consensus       508 --~-~---~~----~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~  543 (626)
                        . +   ..    ..-+...+...++|++.-|++++.+.|-.-..
T Consensus       209 ~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~P  254 (307)
T PF04118_consen  209 SLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLSHFP  254 (307)
T ss_pred             ccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHHhCC
Confidence              1 0   00    13456677888899998999988888876443

DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].

>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised

Probab=94.66  E-value=1.3  Score=45.15  Aligned_cols=76  Identities=13%  Similarity=0.138  Sum_probs=59.6

Q ss_pred             cchhHHHhhHhHHhcCCCChHHHHHHHH-HHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchh---hhHHHHHHHhhcCC
Q 006898          139 FTARVSACGLFHIAYPSAPDILKTELRS-IYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLK---TDIMSIFEDLTQDD  214 (626)
Q Consensus       139 ~~~r~~a~~~l~~~~~~~~~~~~~~l~~-~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~---~~ll~~l~~l~~d~  214 (626)
                      ...|..++.++|.+..+++......+.. .+...+++++..-|..++-.+..++.........   +.+.+.+...+.++
T Consensus       101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~  180 (441)
T PF12054_consen  101 IRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENP  180 (441)
T ss_pred             HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCC
Confidence            4578999999999999998877777766 6888999999999999999999999877653222   46667777776644

This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.

>KOG4524 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.64  E-value=7.2  Score=42.56  Aligned_cols=91  Identities=13%  Similarity=0.138  Sum_probs=66.3

Q ss_pred             hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChh--hH---HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChH
Q 006898          396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FF---DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE  470 (626)
Q Consensus       396 ~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~--~~---~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~  470 (626)
                      .+|+..-..++.+++-++|..++..+......+...  .+   .....|.+...+.++++-+-..|.+|+.+++...|+=
T Consensus       802 ~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDF  881 (1014)
T KOG4524|consen  802 LKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDF  881 (1014)
T ss_pred             HHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhH
Confidence            456666667788999999999999888655544321  11   2345677788889999999999999999999887652


Q ss_pred             ---HHhhhhHHHHHhhhcC
Q 006898          471 ---WAMQHITPQVLEMINN  486 (626)
Q Consensus       471 ---~~~~~il~~l~~~l~~  486 (626)
                         .+.+.++|.+...+.|
T Consensus       882 v~sR~l~dvlP~l~~~~~~  900 (1014)
T KOG4524|consen  882 VASRFLEDVLPWLKHLCQD  900 (1014)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence               2346778887765544

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=94.63  E-value=0.71  Score=45.35  Aligned_cols=140  Identities=13%  Similarity=0.159  Sum_probs=82.1

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCC-------chhHHHHHHHHHHHhhccc-
Q 006898          162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD-------QDSVRLLAVEGCAALGKLL-  233 (626)
Q Consensus       162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~-------~~~vr~~a~~~l~~l~~~~-  233 (626)
                      +.....+.+.+.+.+...|..++..|..       +.-...++|+|...+.+.       +...-...++...++...- 
T Consensus       177 q~yf~~It~a~~~~~~~~r~~aL~sL~t-------D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~  249 (343)
T cd08050         177 QLYFEEITEALVGSNEEKRREALQSLRT-------DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPN  249 (343)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHhcc-------CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCC
Confidence            3344444455556677777776666543       333456777777766544       2222233344444444321 


Q ss_pred             -CchhhhhhhHHHHHHhc----------CCCCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCCh--HHHHH
Q 006898          234 -EPQDCVAHILPVIVNFS----------QDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNE--AEVRI  298 (626)
Q Consensus       234 -~~~~~~~~i~~~l~~~~----------~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~--~~vr~  298 (626)
                       .-+.+...++|.+..++          .+..|..|..++..++.++..++...  ....+...+.+.+.|+.  ....-
T Consensus       250 l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~Y  329 (343)
T cd08050         250 LHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHY  329 (343)
T ss_pred             CchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhh
Confidence             22567777787775433          24679999999999999999887652  22244445555555544  23366


Q ss_pred             HHHHhHHHHH
Q 006898          299 AAAGKVTKFC  308 (626)
Q Consensus       299 ~a~~~l~~l~  308 (626)
                      +|+.+|..++
T Consensus       330 GAi~GL~~lG  339 (343)
T cd08050         330 GAIVGLSALG  339 (343)
T ss_pred             HHHHHHHHhC
Confidence            7777776664

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as

>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]

Probab=94.59  E-value=4.7  Score=39.03  Aligned_cols=68  Identities=22%  Similarity=0.310  Sum_probs=50.7

Q ss_pred             HHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhc
Q 006898          177 PMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS  250 (626)
Q Consensus       177 ~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~  250 (626)
                      ..-++-+.+.++++..+++.  ..+..++.-..++.|.+..+|..|++.|+.+++.    .....+.+.+.+++
T Consensus        38 ~k~k~lasq~ip~~fk~fp~--la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~----d~~~rv~d~l~qLL  105 (460)
T KOG2213|consen   38 SKEKRLASQFIPRFFKHFPS--LADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG----DALSRVNDVLVQLL  105 (460)
T ss_pred             hHHHHHHHHHHHHHHhhCch--hhhHHHHhhhccccccchhhHHHHHhccchhccC----chhhhhHHHHHHHH
Confidence            45677788999999888764  3456677778889999999999999999999876    23444444444443

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=94.58  E-value=5.1  Score=39.32  Aligned_cols=119  Identities=12%  Similarity=0.098  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 006898          105 KAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA  184 (626)
Q Consensus       105 ~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~  184 (626)
                      +++.++-.+.+....++...+++-++..+++.+...++  ......       ...++...+.++.++.+.++-+-....
T Consensus        65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~--lf~~~a-------~~~k~~~~~~fl~ll~r~d~~iv~~~~  135 (442)
T KOG2759|consen   65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVD--LFHDYA-------HKLKRTEWLSFLNLLNRQDTFIVEMSF  135 (442)
T ss_pred             HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHH--HHHHHH-------HhhhccchHHHHHHHhcCChHHHHHHH
Confidence            45666666667666677777777777766665432221  111111       011222345566777777777777667


Q ss_pred             HhHHHHHHhhCcc--c-hhhhHHHHHHHhhcC-CchhHHHHHHHHHHHhhcc
Q 006898          185 SNLGKFAATVEPA--H-LKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKL  232 (626)
Q Consensus       185 ~~l~~l~~~~~~~--~-~~~~ll~~l~~l~~d-~~~~vr~~a~~~l~~l~~~  232 (626)
                      ..++.++......  . ..+.....+...++. .+...+..++++|..+...
T Consensus       136 ~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~  187 (442)
T KOG2759|consen  136 RILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV  187 (442)
T ss_pred             HHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC
Confidence            7777776643321  1 223344455555555 4556677777787776643

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=94.52  E-value=3.2  Score=42.18  Aligned_cols=192  Identities=13%  Similarity=0.157  Sum_probs=95.6

Q ss_pred             hhhhHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhCCC------ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhh
Q 006898          239 VAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPE------PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL  311 (626)
Q Consensus       239 ~~~i~~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  311 (626)
                      .+.+...+...+++| ++.--+...++++.+.+...+.      .+.+.++|.+...+.....+.--.+.+.++.+.+..
T Consensus        69 l~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~  148 (435)
T PF03378_consen   69 LQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELR  148 (435)
T ss_dssp             HHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            334444444455554 4455566667777766654322      123568888888887665566667778888887765


Q ss_pred             ChHHHHHhhHHHHHHhccCCCHHHH---HHHHHHHHhhhhhhcHHH----HHHhHHHHHHHhhcCCCHHHHHHHHHhhHH
Q 006898          312 NPELAIQHILPCVKELSSDSSQHVR---SALASVIMGMAPLLGKDA----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQ  384 (626)
Q Consensus       312 ~~~~~~~~l~~~l~~l~~d~~~~vr---~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~  384 (626)
                      ......+.....+..++...-|.-|   -++.+.+..+.+.-+...    ..+.++.++-+++..+..+  ..+..-|..
T Consensus       149 ~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~  226 (435)
T PF03378_consen  149 PSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLES  226 (435)
T ss_dssp             S--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHH
Confidence            5222222222333333333334322   233334443333322221    2345666677777655433  346677777


Q ss_pred             HHhhhchhhH---HhhHHHHHHHHh-cCCChHHHHHHHHHHHHHHHhhChhh
Q 006898          385 VNQVIGIDLL---SQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGF  432 (626)
Q Consensus       385 ~~~~~~~~~~---~~~i~~~l~~~~-~~~~~~~r~~~~~~l~~l~~~~~~~~  432 (626)
                      +...++.+.+   ...++..+...+ +++........+.+++.++...|+..
T Consensus       227 iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~  278 (435)
T PF03378_consen  227 IVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDF  278 (435)
T ss_dssp             HHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHH
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHH
Confidence            7777766554   233333333333 45666666666676666655555543

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=94.48  E-value=5.7  Score=39.49  Aligned_cols=215  Identities=16%  Similarity=0.161  Sum_probs=117.4

Q ss_pred             hcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHH----H--HHHHhhcCC-chhHHHHHHHHHHHhhcccC-chhhhhhh
Q 006898          171 LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIM----S--IFEDLTQDD-QDSVRLLAVEGCAALGKLLE-PQDCVAHI  242 (626)
Q Consensus       171 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll----~--~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~-~~~~~~~i  242 (626)
                      ++.+. ..||.++.+.+..+......   ...+.    +  ....+..|. ...-|..|++.+.++.+.-+ .+.+...+
T Consensus        34 lL~~~-~~vraa~yRilRy~i~d~~~---l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~v  109 (371)
T PF14664_consen   34 LLSDS-KEVRAAGYRILRYLISDEES---LQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPRGV  109 (371)
T ss_pred             HCCCc-HHHHHHHHHHHHHHHcCHHH---HHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCHHH
Confidence            44444 99999999998887664321   11111    1  122333333 45668899999999988743 24455667


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChH------HH
Q 006898          243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE------LA  316 (626)
Q Consensus       243 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~------~~  316 (626)
                      +..+....++++...|..+.+++.+++-..+.-.....-+..+...+.|...++....+.++-.+...-...      .-
T Consensus       110 vralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~d  189 (371)
T PF14664_consen  110 VRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLRPGFD  189 (371)
T ss_pred             HHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhcCCcc
Confidence            777888888888899999999998887654332222334555666666644445555555544444322111      11


Q ss_pred             HHhhHHHHHHh----ccCCCH-HHHHHHHHHHHhhhhhhc------HHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHH
Q 006898          317 IQHILPCVKEL----SSDSSQ-HVRSALASVIMGMAPLLG------KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV  385 (626)
Q Consensus       317 ~~~l~~~l~~l----~~d~~~-~vr~~~~~~l~~l~~~~~------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~  385 (626)
                      .+.++..+...    .++... ..-+.+..++..+-+...      ...+  .-+..+...|.-+.+++|...+..+-.+
T Consensus       190 L~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~--~~lksLv~~L~~p~~~ir~~Ildll~dl  267 (371)
T PF14664_consen  190 LESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDF--RGLKSLVDSLRLPNPEIRKAILDLLFDL  267 (371)
T ss_pred             HHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCc--hHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            12333333222    111111 112222233333322211      1111  2345566777778888888888777776


Q ss_pred             Hhhhch
Q 006898          386 NQVIGI  391 (626)
Q Consensus       386 ~~~~~~  391 (626)
                      ...-.+
T Consensus       268 lrik~p  273 (371)
T PF14664_consen  268 LRIKPP  273 (371)
T ss_pred             HCCCCC
Confidence            654333

>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]

Probab=94.46  E-value=7.5  Score=40.75  Aligned_cols=68  Identities=13%  Similarity=0.158  Sum_probs=43.5

Q ss_pred             hhHHhhHHHHHHHHhcCC----ChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 006898          392 DLLSQSLLPAIVELAEDR----HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLA  464 (626)
Q Consensus       392 ~~~~~~i~~~l~~~~~~~----~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~  464 (626)
                      +.+.+.++..+.+...|.    ...+|..++..+..+.-.  ...   ..-+.+.+.+-|+.+.+|.-+..+..++.
T Consensus       686 e~fr~~iln~l~nY~~d~rGDVgs~iR~~a~klm~SfL~k--D~~---~~~~y~iR~~~dki~~lR~l~yqa~eqI~  757 (993)
T COG5234         686 EEFRKEILNVLSNYLTDTRGDVGSWIRKPAMKLMSSFLVK--DSS---GKKLYIIRQTFDKIDSLRGLAYQALEQIR  757 (993)
T ss_pred             HHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHhhc--ccc---CCchhHHHHhhcccHHHHhhhhhhhhhee
Confidence            455566777777766443    456888888877774321  111   12235677788999999987777766553

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=94.46  E-value=7.1  Score=40.47  Aligned_cols=279  Identities=10%  Similarity=0.013  Sum_probs=140.0

Q ss_pred             cHHHHHHHHhhHHHHHHhhChHhhhhhhcccccccc--CCchHHHHHHHHHHhccccccCC--cchhhcchHHHhhhhcC
Q 006898           22 DIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN--DDDDEVLLAMAEELGVFIPYVGG--VEHAHVLLPPLETLCTV   97 (626)
Q Consensus        22 d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~--~~~~~vr~~~~~~l~~~~~~~~~--~~~~~~l~~~l~~l~~~   97 (626)
                      ....|..|++.+......+..+ ....+.-....+.  +..++.|.++.+.+..+++.-..  ......+...+..-..+
T Consensus         3 ~l~~R~~a~~~l~~~i~~~~~~-~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~   81 (464)
T PF11864_consen    3 PLSERIKAAEELCESIQKYPLS-SIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSND   81 (464)
T ss_pred             CHHHHHHHHHHHHHHHHhCCch-HHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCc
Confidence            3567899999998887766553 2333333333322  23568999999999888774332  11112222222222233


Q ss_pred             cchHHHHHHHHHHHHHHhhcCh--hhHHHhHHHHHHHHh----------c-CC------------ccchhHHHhhHhHHh
Q 006898           98 EETCVRDKAVESLCRIGSQMRE--SDLVDWYIPLVKRLA----------A-GE------------WFTARVSACGLFHIA  152 (626)
Q Consensus        98 ~~~~vR~~a~~~l~~i~~~~~~--~~~~~~l~~~l~~l~----------~-~~------------~~~~r~~a~~~l~~~  152 (626)
                      ++-..|-.|..+|..=++.+..  +.+.+.+..++....          + +.            +...-.....++..+
T Consensus        82 ~d~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nv  161 (464)
T PF11864_consen   82 DDFDLRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNV  161 (464)
T ss_pred             hhHHHHHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHH
Confidence            4455677777777655555432  122222333332222          0 00            000001122223333


Q ss_pred             cC----CCChHHHHHHHHHHHHhcCCCC-HHHHHHHHHhHHHHHHh--hCccchhhhHHHHHHHhhcCCchhHHHHHHHH
Q 006898          153 YP----SAPDILKTELRSIYTQLCQDDM-PMVRRSAASNLGKFAAT--VEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEG  225 (626)
Q Consensus       153 ~~----~~~~~~~~~l~~~l~~l~~d~~-~~vR~~a~~~l~~l~~~--~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~  225 (626)
                      ..    .+.+.....++..+..++..++ ...=+.+...+..+...  +|. .-...++..+....+-.  +....+-++
T Consensus       162 iKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~-~sl~~~i~vLCsi~~~~--~l~~~~w~~  238 (464)
T PF11864_consen  162 IKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPS-ESLSPCIEVLCSIVNSV--SLCKPSWRT  238 (464)
T ss_pred             HhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCCh-HHHHHHHHHHhhHhccc--ccchhHHHH
Confidence            22    2344566667777777665433 22335677777777653  232 22233444444442222  455556667


Q ss_pred             HHHhhcccCchhhhhhhHHHHHHhc--C----CCCHHHHHHHHHHHHHHHHHhCCCcc----ccc--hHHHHHHhcCCCh
Q 006898          226 CAALGKLLEPQDCVAHILPVIVNFS--Q----DKSWRVRYMVANQLYELCEAVGPEPT----RMD--LVPAYVRLLRDNE  293 (626)
Q Consensus       226 l~~l~~~~~~~~~~~~i~~~l~~~~--~----d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~--l~~~l~~~l~d~~  293 (626)
                      +.+++..-..    ...+..+...+  .    ..+..+-+-|+..++.+....|.+..    ...  ++|.+...++..+
T Consensus       239 m~nL~~S~~g----~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~  314 (464)
T PF11864_consen  239 MRNLLKSHLG----HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNS  314 (464)
T ss_pred             HHHHHcCccH----HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCC
Confidence            7766643221    22333333333  2    23445556777788877666544322    123  8888888888666


Q ss_pred             HHHHHHHHHhHHHHH
Q 006898          294 AEVRIAAAGKVTKFC  308 (626)
Q Consensus       294 ~~vr~~a~~~l~~l~  308 (626)
                      +-|-...+..+..+.
T Consensus       315 ~~v~~eIl~~i~~ll  329 (464)
T PF11864_consen  315 PRVDYEILLLINRLL  329 (464)
T ss_pred             CeehHHHHHHHHHHH
Confidence            555545555554444

>PF05536 Neurochondrin: Neurochondrin

Probab=94.42  E-value=7.9  Score=40.84  Aligned_cols=177  Identities=15%  Similarity=0.128  Sum_probs=90.0

Q ss_pred             hHHHHHHHHHHHhhcccC--chhhhhhhHHHHHHhcCCCCH-HHHHHHHHHHHHHHHHh-CCC-ccccchHHHHHHhcCC
Q 006898          217 SVRLLAVEGCAALGKLLE--PQDCVAHILPVIVNFSQDKSW-RVRYMVANQLYELCEAV-GPE-PTRMDLVPAYVRLLRD  291 (626)
Q Consensus       217 ~vr~~a~~~l~~l~~~~~--~~~~~~~i~~~l~~~~~d~~~-~vR~~a~~~l~~l~~~~-~~~-~~~~~l~~~l~~~l~d  291 (626)
                      ..+..|+..|..++..-.  .....-.-+|.+...+...+. .+-..++++|..++..- |.+ ......++.+.+.+.+
T Consensus        72 ~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~  151 (543)
T PF05536_consen   72 EYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN  151 (543)
T ss_pred             HHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh
Confidence            445555555555554100  011222345555555444433 55555555555555211 111 1112334444444433


Q ss_pred             ChHHHHHHHHHhHHHHHHhhChH------HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhc--------HHHHHH
Q 006898          292 NEAEVRIAAAGKVTKFCRILNPE------LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG--------KDATIE  357 (626)
Q Consensus       292 ~~~~vr~~a~~~l~~l~~~~~~~------~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~--------~~~~~~  357 (626)
                       .+.....++..+..+....+.+      .....+++.+...........|-.++..++.+....+        ......
T Consensus       152 -~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~  230 (543)
T PF05536_consen  152 -QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLS  230 (543)
T ss_pred             -CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHH
Confidence             3345555666666555544422      1123444555554444444555566666666554432        122344


Q ss_pred             hHHHHHHHhhcC-CCHHHHHHHHHhhHHHHhhhchhhH
Q 006898          358 QLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGIDLL  394 (626)
Q Consensus       358 ~l~~~l~~~l~d-~~~~vr~~a~~~L~~~~~~~~~~~~  394 (626)
                      .+...+..++.. ..+.-|..+....+.+.+..|.+++
T Consensus       231 ~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~wl  268 (543)
T PF05536_consen  231 DLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPEWL  268 (543)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChHhh
Confidence            566666666664 3577888888888888888888765

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=94.36  E-value=1.3  Score=42.36  Aligned_cols=35  Identities=17%  Similarity=0.343  Sum_probs=23.2

Q ss_pred             chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChH
Q 006898          280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE  314 (626)
Q Consensus       280 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  314 (626)
                      -++|.++.++.|.++++|..++..+..+.+.++..
T Consensus       119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~  153 (282)
T PF10521_consen  119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAA  153 (282)
T ss_pred             HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChh
Confidence            46667777777777777777777776666655444

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=94.30  E-value=18  Score=44.63  Aligned_cols=250  Identities=16%  Similarity=0.134  Sum_probs=139.7

Q ss_pred             ccCCchHHHHHHHHHHhccccccCC--------cchhhcchHHHhh-hhcCcchHHHHHHHHHHHHHHhhcChhhHHHhH
Q 006898           56 NNDDDDEVLLAMAEELGVFIPYVGG--------VEHAHVLLPPLET-LCTVEETCVRDKAVESLCRIGSQMRESDLVDWY  126 (626)
Q Consensus        56 ~~~~~~~vr~~~~~~l~~~~~~~~~--------~~~~~~l~~~l~~-l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l  126 (626)
                      +..+++++|..++..+-.+..+...        -+....++..+.. ...|.++.+|......+.   +...+....+..
T Consensus       490 ~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~~~~~~laQ~~~  566 (2341)
T KOG0891|consen  490 LEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---ERFDAQLAQPDL  566 (2341)
T ss_pred             HhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---cchhhhhcCchh
Confidence            3457889999997666554443221        0113334444333 345678888876655554   222222222233


Q ss_pred             HHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcC----CCCHHHHHHHHHhHHHHHHhhCc--cchh
Q 006898          127 IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQ----DDMPMVRRSAASNLGKFAATVEP--AHLK  200 (626)
Q Consensus       127 ~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~----d~~~~vR~~a~~~l~~l~~~~~~--~~~~  200 (626)
                      +........+.....+..+...++.++...+....+.+....+...+    +...++....+.-+..+......  ..+.
T Consensus       567 lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v  646 (2341)
T KOG0891|consen  567 LRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLISPYV  646 (2341)
T ss_pred             HHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhc
Confidence            34444455666667777788888877776554444444444444433    33333333333333333222111  1223


Q ss_pred             hhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc--hhhhhhhHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhCCCc-
Q 006898          201 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPEP-  276 (626)
Q Consensus       201 ~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~~~-  276 (626)
                      +.++..+...+.|.+..+-..+..+.+.++...+.  ....+..++.+.+.+.|- +..-|.++..+++.+...-|-.. 
T Consensus       647 ~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~  726 (2341)
T KOG0891|consen  647 GPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVVD  726 (2341)
T ss_pred             CchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEec
Confidence            33445556667788888888899999999988884  223345666666665554 34456777888888876544221 


Q ss_pred             ---cccchHHHHHHhcC-CChHHHHHHHHHhHHHHH
Q 006898          277 ---TRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFC  308 (626)
Q Consensus       277 ---~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~  308 (626)
                         ..+.++..+...++ .....+|.+++..++..+
T Consensus       727 p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g  762 (2341)
T KOG0891|consen  727 PYLDYPELLDILINILKTEQSSTIRREAIRLLGLLG  762 (2341)
T ss_pred             ccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhc
Confidence               12345555554443 334678888888887544

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=94.29  E-value=0.26  Score=42.14  Aligned_cols=130  Identities=17%  Similarity=0.245  Sum_probs=82.9

Q ss_pred             CcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChH-----HHHHHHHHHHHh
Q 006898           97 VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-----LKTELRSIYTQL  171 (626)
Q Consensus        97 ~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~-----~~~~l~~~l~~l  171 (626)
                      ...+.+|..+.-++.++. ...++...+.+..++.....+........+...+..+++..++-     ..+.+++.+..+
T Consensus        16 ~~~~~~r~~a~v~l~k~l-~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~   94 (157)
T PF11701_consen   16 RQPEEVRSHALVILSKLL-DAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL   94 (157)
T ss_dssp             TTSCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred             CCCHhHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence            346668999988888886 33344555667777777776666667778888888888877652     224566666666


Q ss_pred             cC--CCCHHHHHHHHHhHHHHHHhhCc-cchhhhHHHHHHHhhcC-Cchh-HHHHHHHHHH
Q 006898          172 CQ--DDMPMVRRSAASNLGKFAATVEP-AHLKTDIMSIFEDLTQD-DQDS-VRLLAVEGCA  227 (626)
Q Consensus       172 ~~--d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~ll~~l~~l~~d-~~~~-vr~~a~~~l~  227 (626)
                      +.  .++..+...+++.+..-+..-.- .....+..+.+.++.+. +++. +|..|+-.|.
T Consensus        95 ~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~  155 (157)
T PF11701_consen   95 ASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC  155 (157)
T ss_dssp             HH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred             HhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence            66  66777888888777664432211 23445566777777743 3444 5666655543

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=94.22  E-value=5.6  Score=39.28  Aligned_cols=74  Identities=16%  Similarity=0.023  Sum_probs=44.7

Q ss_pred             ChHHHHHHHHHHHHhccccChHH---hhhcHHHHHhhhCCCC--CchHHHHHHHHHHHHHhhhccchhhhcccchHHhhh
Q 006898          488 HYLYRMTILRAISLLAPVMGSEI---TCSRLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSFMLY  562 (626)
Q Consensus       488 ~~~vR~~a~~~l~~i~~~~~~~~---~~~~~l~~l~~~l~d~--~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~l  562 (626)
                      +...-...++++..+........   ........++.++.++  .+.||..|.+++.++....+.. +...++..+. ..
T Consensus       175 ~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~-l~~~li~~l~-~~  252 (339)
T PF12074_consen  175 SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL-LSKSLISGLW-KW  252 (339)
T ss_pred             CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH-HHHHHHHHHH-HH
Confidence            33344555556655554433221   1233445566666666  8999999999999988775442 4556666666 44


Q ss_pred             c
Q 006898          563 L  563 (626)
Q Consensus       563 ~  563 (626)
                      +
T Consensus       253 l  253 (339)
T PF12074_consen  253 L  253 (339)
T ss_pred             H
Confidence            3

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=94.18  E-value=0.68  Score=39.73  Aligned_cols=140  Identities=15%  Similarity=0.218  Sum_probs=74.3

Q ss_pred             HHHHHHHHHhcC-CCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhc-----CCchhHHHHHHHHHHHhhcc-cC
Q 006898          162 TELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ-----DDQDSVRLLAVEGCAALGKL-LE  234 (626)
Q Consensus       162 ~~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~-----d~~~~vr~~a~~~l~~l~~~-~~  234 (626)
                      +++++.+..+++ +.++.+|+.+++.+|.+...-+-      ....+.....     +.........   +...... ..
T Consensus         9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~------~~k~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~   79 (160)
T PF11865_consen    9 PELLDILLNILKTEQSQSIRREALRVLGILGALDPY------KHKSIQKSLDSKSSENSNDESTDIS---LPMMGISPSS   79 (160)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcH------HHhcccccCCccccccccccchhhH---HhhccCCCch
Confidence            556666666654 34677888888888877543110      0000000000     1111111111   1111111 12


Q ss_pred             chhhhhhhHHHHHHhcCCCCHH-HHHHHHHHHHHHHHHhCC--CccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHh
Q 006898          235 PQDCVAHILPVIVNFSQDKSWR-VRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI  310 (626)
Q Consensus       235 ~~~~~~~i~~~l~~~~~d~~~~-vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~  310 (626)
                      ++.+....+..+.+.++|++-. -...+++++..+....|.  -.+..+++|.++..++..++..|+.....|+.+...
T Consensus        80 ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~i  158 (160)
T PF11865_consen   80 EEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSI  158 (160)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            2444555566666666666433 233566666666655543  356677888888888776668888888777776654

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6)

Probab=94.10  E-value=0.21  Score=38.05  Aligned_cols=69  Identities=25%  Similarity=0.369  Sum_probs=52.0

Q ss_pred             CCchHHHHHHHHHHHHHHHHhChH--HHhhhhHHHHHhhhcCC--ChHHHHHHHHHHHHhccccChHHhhhcHHHHH
Q 006898          447 DKVYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMGSEITCSRLLPVV  519 (626)
Q Consensus       447 d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~l~~~--~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l  519 (626)
                      |+.+.+|..|++.++.++..++..  ..+.+++..+.+.+.|+  +...+.+|+.++..+    |++.+...++|.+
T Consensus        17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l----G~~~vr~~ilP~l   89 (92)
T PF07571_consen   17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL----GPEAVRALILPNL   89 (92)
T ss_pred             cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH----HHHHHHHhhccCc
Confidence            567889999999999999988864  35677888888877765  566888888888876    4455555566654

; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus

>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans)

Probab=94.03  E-value=6  Score=37.99  Aligned_cols=174  Identities=15%  Similarity=0.121  Sum_probs=110.1

Q ss_pred             HHHHHHhhcCC-chhHHHHHHHHHHHhhcccCchhhh---hhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcccc
Q 006898          204 MSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQDCV---AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM  279 (626)
Q Consensus       204 l~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~~~~---~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~  279 (626)
                      -..+.+.++-. ..-|...|++.-..+.+..+.+...   ....|-+..++...+-.||-.....+....-.+|. ....
T Consensus        56 ~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~p  134 (307)
T PF04118_consen   56 SKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALRP  134 (307)
T ss_pred             HHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHHH
Confidence            33445555544 3468888999988888888875432   22344455556666778888888877766555554 2222


Q ss_pred             ---chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhc-----
Q 006898          280 ---DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG-----  351 (626)
Q Consensus       280 ---~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~-----  351 (626)
                         .++..++..++|+..++...+...+..+...++.+.+.+.++-.+.     .++.+|..+...+..-.....     
T Consensus       135 ~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l~~~~~~~~~  209 (307)
T PF04118_consen  135 CLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII-----TSPSRRLGALNYLLRRLPKFQNDELS  209 (307)
T ss_pred             HHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh-----cCcchhHHHHHHHHHhCCcccccccc
Confidence               2333344456788889999999999999999999877777765554     456788888776655433322     


Q ss_pred             -H-HH---H----HHhHHHHHHHhhcCCCHHHHHHHHHhhH
Q 006898          352 -K-DA---T----IEQLLPIFLSLLKDEFPDVRLNIISKLD  383 (626)
Q Consensus       352 -~-~~---~----~~~l~~~l~~~l~d~~~~vr~~a~~~L~  383 (626)
                       . +.   .    ..-++..+..++.|++.-|++.++.-|-
T Consensus       210 ~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl  250 (307)
T PF04118_consen  210 LSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLL  250 (307)
T ss_pred             cchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence             0 00   0    1234556666666666666666655443

DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=93.94  E-value=10  Score=40.25  Aligned_cols=354  Identities=12%  Similarity=0.047  Sum_probs=190.9

Q ss_pred             HhhHhHHhcCCCChHHHHHHHHHHHHhcC-----C---CCHHHHHHHHHhHHHHHHhhCcc-----chhhhHHHHHHHhh
Q 006898          145 ACGLFHIAYPSAPDILKTELRSIYTQLCQ-----D---DMPMVRRSAASNLGKFAATVEPA-----HLKTDIMSIFEDLT  211 (626)
Q Consensus       145 a~~~l~~~~~~~~~~~~~~l~~~l~~l~~-----d---~~~~vR~~a~~~l~~l~~~~~~~-----~~~~~ll~~l~~l~  211 (626)
                      +..++-....+-++...+.+++.+...++     +   .+++-...+.+.++.+.....+.     ....-+++.+....
T Consensus       390 al~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f  469 (970)
T COG5656         390 ALFFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAF  469 (970)
T ss_pred             HHHHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhh
Confidence            33444444444455567778888777662     1   23555667777777777644332     12233556666667


Q ss_pred             cCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc-cccc---hHHHHHH
Q 006898          212 QDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP-TRMD---LVPAYVR  287 (626)
Q Consensus       212 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~-~~~~---l~~~l~~  287 (626)
                      +++.--.|..+++.+..+...++.......+......++.+.+-.|+..++-++.-+........ ...+   .+.-++.
T Consensus       470 ~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLs  549 (970)
T COG5656         470 RSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLS  549 (970)
T ss_pred             cCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHH
Confidence            88888889999999999877777666666667777777888888899998888877765432111 1122   3333444


Q ss_pred             hcCCChHHHHHHHHHhH-HHHHHhhChH--HHHHhhH----HHHHHhccCC---CH---HHHHHHHHHHHhhh---hhhc
Q 006898          288 LLRDNEAEVRIAAAGKV-TKFCRILNPE--LAIQHIL----PCVKELSSDS---SQ---HVRSALASVIMGMA---PLLG  351 (626)
Q Consensus       288 ~l~d~~~~vr~~a~~~l-~~l~~~~~~~--~~~~~l~----~~l~~l~~d~---~~---~vr~~~~~~l~~l~---~~~~  351 (626)
                      +-++-+-++-..+++.+ +.+.+.+.+-  .+...+.    .....+..++   +.   .-..++...+..+.   -.+.
T Consensus       550 LSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSle  629 (970)
T COG5656         550 LSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLE  629 (970)
T ss_pred             hcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcc
Confidence            44554455555555443 3344443321  1122222    2333333332   11   12223333333332   2233


Q ss_pred             HHH-----HHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhc-hhhHHhhHHHHHHHHhcCCCh-HHHHHHHHHHHHH
Q 006898          352 KDA-----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-IDLLSQSLLPAIVELAEDRHW-RVRLAIIEYIPLL  424 (626)
Q Consensus       352 ~~~-----~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~-~~~~~~~i~~~l~~~~~~~~~-~~r~~~~~~l~~l  424 (626)
                      +..     ....+.|.+.-.+++...++-..|+.-+....-... .....-.+...+.++..++.. ..-..+..++..+
T Consensus       630 n~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nf  709 (970)
T COG5656         630 NRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNF  709 (970)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHH
Confidence            222     234567777777787777887777776665421110 000112233334444444442 3334455555555


Q ss_pred             HHhhCh-----hhHHHHHHHHHHHHhcCCch--HHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhh------cCCChHH
Q 006898          425 ASQLGV-----GFFDDKLGALCMQWLQDKVY--SIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI------NNPHYLY  491 (626)
Q Consensus       425 ~~~~~~-----~~~~~~l~p~l~~~l~d~~~--~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l------~~~~~~v  491 (626)
                      ...-+.     ..+...+..+....+...+.  +=+..+++.+..++-.++++ ..++.+|.+.+..      .|.....
T Consensus       710 ityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~-Ll~qy~plfi~vags~l~~~dElg~~  788 (970)
T COG5656         710 ITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDE-LLSQYLPLFISVAGSGLKMIDELGPA  788 (970)
T ss_pred             HHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccch-hHHhhhHHHHHHHhhhhhccccccch
Confidence            543222     22334455666666655544  55778888888888887765 3344566555543      3444444


Q ss_pred             HHHHHHHH
Q 006898          492 RMTILRAI  499 (626)
Q Consensus       492 R~~a~~~l  499 (626)
                      +..+++.+
T Consensus       789 sv~aleli  796 (970)
T COG5656         789 SVYALELI  796 (970)
T ss_pred             hhhHHHHH
Confidence            55555533

>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes

Probab=93.90  E-value=1.2  Score=40.66  Aligned_cols=131  Identities=16%  Similarity=0.152  Sum_probs=76.3

Q ss_pred             HHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCC-CCHHHHHHH-HHhHHHHHHhhCccchhhhH
Q 006898          126 YIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQD-DMPMVRRSA-ASNLGKFAATVEPAHLKTDI  203 (626)
Q Consensus       126 l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d-~~~~vR~~a-~~~l~~l~~~~~~~~~~~~l  203 (626)
                      ...++..+..+.....|..|+.++.......+.    ..++.+...+.+ .+|.+-... ...++.+....      +..
T Consensus        52 ~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~~----~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------~~~  121 (213)
T PF08713_consen   52 LYELADELWESGYREERYLALLILDKRRKKLTE----EDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------PEA  121 (213)
T ss_dssp             HHHHHHHHHCSSCHHHHHHHHHHHHHCGGG--H----HHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------GGH
T ss_pred             HHHHHHHHcCCchHHHHHHHHHHhHHHhhhhhH----HHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------HHH
Confidence            344555666666666677777766654433322    233444444433 456554444 34445543321      456


Q ss_pred             HHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006898          204 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCE  270 (626)
Q Consensus       204 l~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~  270 (626)
                      .+.+.+.+++++.-+|..++..+......    ...+.++..+.....|++..||.+...+|..++.
T Consensus       122 ~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~  184 (213)
T PF08713_consen  122 LELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGK  184 (213)
T ss_dssp             HHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence            67777888888877777776655433332    3345667777777788888888887777766653

The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=93.83  E-value=2.2  Score=36.88  Aligned_cols=110  Identities=14%  Similarity=0.082  Sum_probs=70.0

Q ss_pred             HhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChH----HHHHHHHHHHHhcCC-CCHHHHHHHHHhHHHHHHhhCc-c
Q 006898          124 DWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQD-DMPMVRRSAASNLGKFAATVEP-A  197 (626)
Q Consensus       124 ~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~----~~~~l~~~l~~l~~d-~~~~vR~~a~~~l~~l~~~~~~-~  197 (626)
                      +.+...+..+++++++..|..++.++...+...+.+    .-...+..+...++. +.+.+++.++.++..+.....+ +
T Consensus        24 ~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p  103 (165)
T PF08167_consen   24 HKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP  103 (165)
T ss_pred             HHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            345555666777777777777777777777766443    224455556665554 4466889999999988876654 2


Q ss_pred             c--------hhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc
Q 006898          198 H--------LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP  235 (626)
Q Consensus       198 ~--------~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~  235 (626)
                      +        ..+.+++.+.++.++  ..+...++.++..+....+.
T Consensus       104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt  147 (165)
T PF08167_consen  104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT  147 (165)
T ss_pred             chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence            2        123455556666665  45566777777777766554

>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=93.77  E-value=5.6  Score=36.96  Aligned_cols=55  Identities=24%  Similarity=0.385  Sum_probs=40.5

Q ss_pred             hHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhhcCC--ChHHHHHHHHHHHHhcc
Q 006898          450 YSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNP--HYLYRMTILRAISLLAP  504 (626)
Q Consensus       450 ~~VR~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~~~--~~~vR~~a~~~l~~i~~  504 (626)
                      ..+|..|+..++..+..++..+  .+.++...+.+.+-|.  -+.+...|+.++..+.+
T Consensus       301 ~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~k  359 (450)
T COG5095         301 YALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSILSK  359 (450)
T ss_pred             HHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhhhhhhhch
Confidence            4699999999999999988753  3466666776655443  46677888888887654

>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=93.66  E-value=3.3  Score=42.05  Aligned_cols=71  Identities=17%  Similarity=0.216  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHh----------cCCchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhhcCC--ChHHHHHHHHHH
Q 006898          434 DDKLGALCMQWL----------QDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNP--HYLYRMTILRAI  499 (626)
Q Consensus       434 ~~~l~p~l~~~l----------~d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~~~--~~~vR~~a~~~l  499 (626)
                      ...++|.++.++          .|+.+.+|..|+..+..++..++...  ...+++..+.+.+.|+  .+.....++..+
T Consensus       286 lh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL  365 (576)
T KOG2549|consen  286 LHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGL  365 (576)
T ss_pred             HHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHH
Confidence            345666665553          57789999999999999999988652  4577888888877765  577888888888


Q ss_pred             HHhcc
Q 006898          500 SLLAP  504 (626)
Q Consensus       500 ~~i~~  504 (626)
                      ..+..
T Consensus       366 ~~lg~  370 (576)
T KOG2549|consen  366 SELGH  370 (576)
T ss_pred             HHhhh
Confidence            87754

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=93.56  E-value=9.7  Score=38.83  Aligned_cols=193  Identities=12%  Similarity=0.153  Sum_probs=109.2

Q ss_pred             HHHHHHHHHHHhcCCC-CHHHHHHHHHhHHHHHHhhCcc------chhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcc
Q 006898          160 LKTELRSIYTQLCQDD-MPMVRRSAASNLGKFAATVEPA------HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL  232 (626)
Q Consensus       160 ~~~~l~~~l~~l~~d~-~~~vR~~a~~~l~~l~~~~~~~------~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~  232 (626)
                      ..+.+...+...++++ +|.--+..-++++.+.+.....      .+.+.++|.+...++.+..+.--.+.+.++.+.+.
T Consensus        68 il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~  147 (435)
T PF03378_consen   68 ILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLEL  147 (435)
T ss_dssp             HHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3455556666666654 5778888888888888875531      45678999999999888777777788888888877


Q ss_pred             cCchh---hhhhhHHHH-HHhcCCCCHHHHHHHHHHHHHHHHHhCCCc----cccchHHHHHHhcCCChHHHHHHHHHhH
Q 006898          233 LEPQD---CVAHILPVI-VNFSQDKSWRVRYMVANQLYELCEAVGPEP----TRMDLVPAYVRLLRDNEAEVRIAAAGKV  304 (626)
Q Consensus       233 ~~~~~---~~~~i~~~l-~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l  304 (626)
                      .+...   ....++|.+ ...+=+....+ -..+..+..+.+.-+...    ..+.++.++.+++.....+  ..+...|
T Consensus       148 ~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL  224 (435)
T PF03378_consen  148 RPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLL  224 (435)
T ss_dssp             SS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHH
T ss_pred             CCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHH
Confidence            66211   222333333 22221111112 233344444444433322    2345777777887655433  4577888


Q ss_pred             HHHHHhhChHH---HHHhhHHHHH-HhccCCCHHHHHHHHHHHHhhhhhhcHHHH
Q 006898          305 TKFCRILNPEL---AIQHILPCVK-ELSSDSSQHVRSALASVIMGMAPLLGKDAT  355 (626)
Q Consensus       305 ~~l~~~~~~~~---~~~~l~~~l~-~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~  355 (626)
                      ..+...++.+.   +.+.++..+. ++-+.+.++.++..+..++.++...|.+..
T Consensus       225 ~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~l  279 (435)
T PF03378_consen  225 ESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFL  279 (435)
T ss_dssp             HHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHH
Confidence            88888887764   2334444333 444567777777777777777666665543

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.45  E-value=13  Score=40.15  Aligned_cols=172  Identities=10%  Similarity=0.099  Sum_probs=113.2

Q ss_pred             HHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCC-----HHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc---
Q 006898          218 VRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKS-----WRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL---  289 (626)
Q Consensus       218 vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~-----~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l---  289 (626)
                      .|...-+.+...-+.+| +...+.+...+.+++.|.+     |..-.+.+..+..++..+|...  ...+|.+.+..   
T Consensus       440 YR~diSD~~~~~Y~ilg-d~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~--~~~i~rl~~~~asi  516 (982)
T KOG2022|consen  440 YRKDISDLLMSSYSILG-DGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETE--STWIPRLFETSASI  516 (982)
T ss_pred             HHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcch--hHHHHHHHHhcccc
Confidence            45555556655555555 3345556666666666554     7777888889999999888654  23455555544   


Q ss_pred             --CCChHHHHHHHHHhHHHHHHhhChH-HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcH--HHHHHhHHHHHH
Q 006898          290 --RDNEAEVRIAAAGKVTKFCRILNPE-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFL  364 (626)
Q Consensus       290 --~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~  364 (626)
                        +-.++..-..+...++..+..++.+ .+....+|.+.+.+..+..  -..+...+..+++.+..  ..+.+.++..+.
T Consensus       517 k~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk~--s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~  594 (982)
T KOG2022|consen  517 KLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSKE--SEQAISTLKTLCETCPESLDPYADQFSAVCY  594 (982)
T ss_pred             ccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCchH--HHHHHHHHHHHHHhhhhhCchHHHHHHHHHH
Confidence              2236778888888899888877654 4456667888777654333  23444457777766543  234556666666


Q ss_pred             HhhcC--CCHHHHHHHHHhhHHHHhhhchhhH
Q 006898          365 SLLKD--EFPDVRLNIISKLDQVNQVIGIDLL  394 (626)
Q Consensus       365 ~~l~d--~~~~vr~~a~~~L~~~~~~~~~~~~  394 (626)
                      ..+..  -.+..|...+.++|.+.+...++..
T Consensus       595 e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~  626 (982)
T KOG2022|consen  595 EVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEI  626 (982)
T ss_pred             HHhcccccCchHHHHHHHHHHHHHHhccHHhH
Confidence            65543  3578999999999999988876544

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=93.41  E-value=2.4  Score=40.52  Aligned_cols=37  Identities=11%  Similarity=0.026  Sum_probs=22.8

Q ss_pred             hhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc
Q 006898          199 LKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP  235 (626)
Q Consensus       199 ~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~  235 (626)
                      .++-++|.++.+++|.++.+|..++.++..+.+..+.
T Consensus       116 ~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~  152 (282)
T PF10521_consen  116 HWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPA  152 (282)
T ss_pred             hhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCCh
Confidence            3445666666666666666666666666666655544

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=93.37  E-value=10  Score=38.50  Aligned_cols=251  Identities=10%  Similarity=0.085  Sum_probs=126.7

Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHhCCCc----cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhh-ChH-HHHHhhHHH
Q 006898          250 SQDKSWRVRYMVANQLYELCEAVGPEP----TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL-NPE-LAIQHILPC  323 (626)
Q Consensus       250 ~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~-~~~~~l~~~  323 (626)
                      ..+++|.--..+.+.|..+......+.    ....++..++.++..+|+.-|......+..+-... +.. .+.+.+...
T Consensus        99 ~~e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~  178 (409)
T PF01603_consen   99 FLEPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNI  178 (409)
T ss_dssp             ---TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHH
T ss_pred             ccccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            456677766666666666655443322    34467777888888888888888888877755433 222 222334444


Q ss_pred             HHHhccCC-CHHHHHHHHHHHHhhhhhhc---HHHHHHhHHHHHHHhhcCCCH-HHHHHHHHhhHHHHhhhchhhHHhhH
Q 006898          324 VKELSSDS-SQHVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQVIGIDLLSQSL  398 (626)
Q Consensus       324 l~~l~~d~-~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~L~~~~~~~~~~~~~~~i  398 (626)
                      +.+...+. ...--..+++.++.+...+.   ++.....+...++.+.+.+.. ........++..+.+.  ...+...+
T Consensus       179 ~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~k--dp~l~~~~  256 (409)
T PF01603_consen  179 FYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEK--DPSLAEPV  256 (409)
T ss_dssp             HHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH---GGGHHHH
T ss_pred             HHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh--CchhHHHH
Confidence            44444322 22223445556666655443   233333333444444444321 1122233333333321  11122345


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHH---HHHHHHHHhcCCchHHHHHHHHHHHHH--HHHhChHHHh
Q 006898          399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK---LGALCMQWLQDKVYSIRDAAANNLKRL--AEEFGPEWAM  473 (626)
Q Consensus       399 ~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~---l~p~l~~~l~d~~~~VR~~a~~~l~~l--~~~~~~~~~~  473 (626)
                      +..+.+..--.+..-....+..+..+....++..+...   +...+-.++++++..|-+.|+..+..=  ...+..  ..
T Consensus       257 i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~--~~  334 (409)
T PF01603_consen  257 IKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQ--NS  334 (409)
T ss_dssp             HHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHC--TH
T ss_pred             HHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHh--Ch
Confidence            55555555556666777788888888887777666543   445566678899999988888665322  222111  12


Q ss_pred             hhhHHHHHhh----hc-CCChHHHHHHHHHHHHhcc
Q 006898          474 QHITPQVLEM----IN-NPHYLYRMTILRAISLLAP  504 (626)
Q Consensus       474 ~~il~~l~~~----l~-~~~~~vR~~a~~~l~~i~~  504 (626)
                      ..++|.+...    .+ +=|..+|..+..++..+.+
T Consensus       335 ~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~  370 (409)
T PF01603_consen  335 RVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILME  370 (409)
T ss_dssp             HHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            3344444332    22 2255577777666665544

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.65  E-value=13  Score=37.98  Aligned_cols=354  Identities=13%  Similarity=0.145  Sum_probs=181.0

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhh
Q 006898          161 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA  240 (626)
Q Consensus       161 ~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~  240 (626)
                      ++.++..+..+.+.++ .+|-+.+-+++.++-.++  .+.+.+...+..+.+++ +.++     .+-.+.+.+|++....
T Consensus        61 rdsl~thl~~l~~~~~-~i~tQL~vavA~Lal~~~--~W~n~I~e~v~~~~~~~-~~~~-----~lLeiL~VlPEE~~~~  131 (559)
T KOG2081|consen   61 RDSLITHLKELHDHPD-VIRTQLAVAVAALALHMP--EWVNPIFELVRALSNKH-PAVP-----ILLEILKVLPEETRDI  131 (559)
T ss_pred             HHHHHHHHHHHHhCCc-hHHHHHHHHHHHHHHHhH--hhcchHHHHHHHhhcCC-ccHH-----HHHHHHHhCcHhhcch
Confidence            3445555555555554 888888889999888776  23333444444444433 3322     3333444444432110


Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCCh---HHHHHHHHHhHHHHHH--hhChHH
Q 006898          241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNE---AEVRIAAAGKVTKFCR--ILNPEL  315 (626)
Q Consensus       241 ~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~---~~vr~~a~~~l~~l~~--~~~~~~  315 (626)
                      ...     .    ...-|.....-+   +..      ...++..+..++++++   ..+-..++++++....  .+.++.
T Consensus       132 ~~~-----~----~a~Rr~e~~~~l---~~~------~~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~  193 (559)
T KOG2081|consen  132 RLT-----V----GANRRHEFIDEL---AAQ------VSKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQ  193 (559)
T ss_pred             hhh-----h----hhhhHHHHHHHH---HHh------HHHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHH
Confidence            000     0    000111111111   111      1233444444444322   4455566666666555  344443


Q ss_pred             HHH--hhHHHHHHhccCCCHHHHHHHHHHHHhhhhhh-cHHH---HH------HhHHHHHHHh-hcCCCHHHHHHHHHhh
Q 006898          316 AIQ--HILPCVKELSSDSSQHVRSALASVIMGMAPLL-GKDA---TI------EQLLPIFLSL-LKDEFPDVRLNIISKL  382 (626)
Q Consensus       316 ~~~--~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~-~~~~---~~------~~l~~~l~~~-l~d~~~~vr~~a~~~L  382 (626)
                      +..  .++..+...+++.  ..-..+.+++..+.... ..+.   +.      ..++|...++ ...++.+-+.+..+-+
T Consensus       194 v~a~~pLi~l~F~sl~~~--~lhe~At~cic~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIF  271 (559)
T KOG2081|consen  194 VLASFPLITLAFRSLSDD--ELHEEATECICALLYCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIF  271 (559)
T ss_pred             HHhhhHHHHHHHHHcccc--hhhHHHHHHHHHHHHHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHH
Confidence            322  2333444444422  22233333333322111 0000   11      1223332222 2244566666666666


Q ss_pred             HHHHhhh------chhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhh---HHHHHHHHHHHHh--------
Q 006898          383 DQVNQVI------GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWL--------  445 (626)
Q Consensus       383 ~~~~~~~------~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~---~~~~l~p~l~~~l--------  445 (626)
                      ..+++.+      +++.. -.++..+.-....++|++-......+..+.+.+-...   ....+-|++.+++        
T Consensus       272 tel~eaf~~~i~~np~~~-l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~q  350 (559)
T KOG2081|consen  272 TELGEAFVVLISTNPEEF-LRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQ  350 (559)
T ss_pred             HHHHHHHHHHHhhCCCcc-hhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHcc
Confidence            6665543      22211 2344455555678888888888887777776543211   1122233333222        


Q ss_pred             -----------cCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhhc
Q 006898          446 -----------QDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSR  514 (626)
Q Consensus       446 -----------~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~  514 (626)
                                 .|+....|......+..+...+|.+.-.....-.+.+  +.+.|..-++++..+..+++...+..  +.
T Consensus       351 lp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e--~~  426 (559)
T KOG2081|consen  351 LPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPEE--NT  426 (559)
T ss_pred             CCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCccc--cc
Confidence                       1233567899999999999888876433333333322  56789999999999999999877642  45


Q ss_pred             HHHHHhhhCC--CCCchHHHHHHHHHHHHHhhhccc
Q 006898          515 LLPVVINASK--DRVPNIKFNVAKVLQSLIPIVDQS  548 (626)
Q Consensus       515 ~l~~l~~~l~--d~~~~vR~~a~~~l~~i~~~~~~~  548 (626)
                      ++|.+++...  +....+|..++-.+|.+.+.....
T Consensus       427 i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~  462 (559)
T KOG2081|consen  427 IMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQH  462 (559)
T ss_pred             hHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhC
Confidence            5665555442  222349999999999998887653

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=92.60  E-value=11  Score=36.76  Aligned_cols=140  Identities=13%  Similarity=0.090  Sum_probs=62.3

Q ss_pred             hhcCCCHHHHHHHHHhhHHHHhhhchhhHH--hhHHHHHHHHhcC----CChHHHHHHHHHHHHHHHhh--ChhhHHHHH
Q 006898          366 LLKDEFPDVRLNIISKLDQVNQVIGIDLLS--QSLLPAIVELAED----RHWRVRLAIIEYIPLLASQL--GVGFFDDKL  437 (626)
Q Consensus       366 ~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~--~~i~~~l~~~~~~----~~~~~r~~~~~~l~~l~~~~--~~~~~~~~l  437 (626)
                      .+..+|..+...++..+..+...-+.....  +.+++.+.+.+.+    ++......++..+..+...-  ...++....
T Consensus       113 ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~  192 (312)
T PF03224_consen  113 LLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNG  192 (312)
T ss_dssp             H-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHH
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCc
Confidence            444445555555555555544332221110  1333444333322    22233344455555544321  111222444


Q ss_pred             HHHHHHHh-----cCCc--hHHHHHHHHHHHHHHHHhChH----HHhhhhHHHHHhhhcC-CChHHHHHHHHHHHHhccc
Q 006898          438 GALCMQWL-----QDKV--YSIRDAAANNLKRLAEEFGPE----WAMQHITPQVLEMINN-PHYLYRMTILRAISLLAPV  505 (626)
Q Consensus       438 ~p~l~~~l-----~d~~--~~VR~~a~~~l~~l~~~~~~~----~~~~~il~~l~~~l~~-~~~~vR~~a~~~l~~i~~~  505 (626)
                      ++.+...+     .++.  ..+...++-|+..+.  +.++    .....++|.+.+.+++ ...++-..++.++.+++..
T Consensus       193 v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLS--F~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~  270 (312)
T PF03224_consen  193 VSPLFDILRKQATNSNSSGIQLQYQALLCLWLLS--FEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSK  270 (312)
T ss_dssp             HHHHHHHHH---------HHHHHHHHHHHHHHHT--TSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHh--cCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence            55555555     2222  334445555544442  3322    2234488888887654 5677777788888888765


Q ss_pred             cC
Q 006898          506 MG  507 (626)
Q Consensus       506 ~~  507 (626)
                      ..
T Consensus       271 ~~  272 (312)
T PF03224_consen  271 AP  272 (312)
T ss_dssp             SS
T ss_pred             cH
Confidence            54

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=92.58  E-value=12  Score=37.06  Aligned_cols=406  Identities=11%  Similarity=0.061  Sum_probs=186.7

Q ss_pred             ccCCchHHHHHHHHHHhccccccC-Ccch-----hhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChh--hHH----
Q 006898           56 NNDDDDEVLLAMAEELGVFIPYVG-GVEH-----AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES--DLV----  123 (626)
Q Consensus        56 ~~~~~~~vr~~~~~~l~~~~~~~~-~~~~-----~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~--~~~----  123 (626)
                      +...+..|+...+.++....+.-- ...+     ...++.++...-++++.+|-..+.++++.++-.....  .+.    
T Consensus        51 i~~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgG  130 (604)
T KOG4500|consen   51 IMTASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGG  130 (604)
T ss_pred             eeeccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCC
Confidence            344566788888888776654110 0111     2345566777777778889999999999998754431  111    


Q ss_pred             -HhHHHHHHHHhcCCccchhHHHhhHhHHhcCCC--ChHHHH-----HHHHHHHHhcC--CCCHHHHHHHHHhHHHHHHh
Q 006898          124 -DWYIPLVKRLAAGEWFTARVSACGLFHIAYPSA--PDILKT-----ELRSIYTQLCQ--DDMPMVRRSAASNLGKFAAT  193 (626)
Q Consensus       124 -~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~--~~~~~~-----~l~~~l~~l~~--d~~~~vR~~a~~~l~~l~~~  193 (626)
                       +.++..+...+..+++.........++.+....  +++.+.     .+++.+.....  -.+...-....-.+..+.+.
T Consensus       131 aqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~  210 (604)
T KOG4500|consen  131 AQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSF  210 (604)
T ss_pred             ceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHH
Confidence             124555555555555444333333333332221  112221     12332322221  11222222222222222221


Q ss_pred             ----hCccchhhhHHHHHHHhhcC-CchhHHHHHHHHHHHhhcccC------chhhhhhhHHHHHHhcCCCCHHHHHHHH
Q 006898          194 ----VEPAHLKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLE------PQDCVAHILPVIVNFSQDKSWRVRYMVA  262 (626)
Q Consensus       194 ----~~~~~~~~~ll~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~------~~~~~~~i~~~l~~~~~d~~~~vR~~a~  262 (626)
                          +.+......+.-.+.+++.. ..+..+..+++.+...++.-.      .......++..+.+.-.+.+..   ...
T Consensus       211 ~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~---d~~  287 (604)
T KOG4500|consen  211 VCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKT---DML  287 (604)
T ss_pred             HHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchH---HHH
Confidence                11111111122222222221 234455566666655544311      1112222333333322221111   111


Q ss_pred             HHHHHHHHH-----hCCCc-----cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCh------HHHHHhhHHHHHH
Q 006898          263 NQLYELCEA-----VGPEP-----TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP------ELAIQHILPCVKE  326 (626)
Q Consensus       263 ~~l~~l~~~-----~~~~~-----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~  326 (626)
                      ..+...++.     .|.+.     ...+++..+...+...+.+....+.-+++.|+..-..      ..+.+.++..+.+
T Consensus       288 ~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~  367 (604)
T KOG4500|consen  288 NLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQ  367 (604)
T ss_pred             HHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Confidence            112112211     13322     1234777777788877888888888888888764322      1233444444443


Q ss_pred             -hccCCCHHHHHHHHHHHHhhhh-hhcHHHHH-HhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhH------Hhh
Q 006898          327 -LSSDSSQHVRSALASVIMGMAP-LLGKDATI-EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL------SQS  397 (626)
Q Consensus       327 -l~~d~~~~vr~~~~~~l~~l~~-~~~~~~~~-~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~------~~~  397 (626)
                       -..|.+..+.-+++.++..+.- ...+..+. .-+...++.+++-..|.|.-.-..++.-+...  .+++      ...
T Consensus       368 ~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~--qe~~a~eL~kn~~  445 (604)
T KOG4500|consen  368 EKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDS--QEYIACELAKNPE  445 (604)
T ss_pred             hcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhc--hHHHHHHHhcCHH
Confidence             3446677777888888887652 22222121 22444556666666666655555444433221  1111      124


Q ss_pred             HHHHHHHHhcCCChH-HHHHHHHHHHHHHHhhChhh-----HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Q 006898          398 LLPAIVELAEDRHWR-VRLAIIEYIPLLASQLGVGF-----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE  466 (626)
Q Consensus       398 i~~~l~~~~~~~~~~-~r~~~~~~l~~l~~~~~~~~-----~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~  466 (626)
                      ++..+....+++++. +-....+.+..+.+...-+.     ..+..+.....++...+-..+..|.-++..+...
T Consensus       446 l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~~  520 (604)
T KOG4500|consen  446 LFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTESK  520 (604)
T ss_pred             HHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHHH
Confidence            556666666666543 44444444444444311000     0011233344444455556666666666555443

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=92.47  E-value=0.43  Score=42.27  Aligned_cols=73  Identities=18%  Similarity=0.288  Sum_probs=56.3

Q ss_pred             hhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhcc
Q 006898          473 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  547 (626)
Q Consensus       473 ~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~  547 (626)
                      .+..++.+.++.-+++..+|..|++.++.+.+. | -.--....|.+..+..|+++.+|..|...+..+.++++.
T Consensus         6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~q-G-LvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s   78 (187)
T PF12830_consen    6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQ-G-LVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHES   78 (187)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc-C-CCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH
Confidence            456778888888888888999999888887752 1 001246788888899999999999999999888887754

>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=92.39  E-value=32  Score=43.65  Aligned_cols=162  Identities=15%  Similarity=0.053  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh----ChH------HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhcc
Q 006898          435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF----GPE------WAMQHITPQVLEMINNPHYLYRMTILRAISLLAP  504 (626)
Q Consensus       435 ~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~----~~~------~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~  504 (626)
                      ..+++.+...+...+..++..+..++..+....    |..      .....+++.+.++..++.|.-|.+.+..++-+.+
T Consensus       983 ~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~ 1062 (3550)
T KOG0889|consen  983 STFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIE 1062 (3550)
T ss_pred             HHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehh
Confidence            456778888888889999999999988887643    322      1347788888888999999999999999988888


Q ss_pred             ccChHH---hhhcHHHHHhhhCCCCCchHHH--------HHHHHHHHHHhhhccc----hhhhcccchHHhhhccCCCcc
Q 006898          505 VMGSEI---TCSRLLPVVINASKDRVPNIKF--------NVAKVLQSLIPIVDQS----VSTFSVSPFSFMLYLNVNNFN  569 (626)
Q Consensus       505 ~~~~~~---~~~~~l~~l~~~l~d~~~~vR~--------~a~~~l~~i~~~~~~~----~~~~~i~~~l~~~l~~d~d~~  569 (626)
                      ......   +...++..+...++|...++-.        .....+..+....+..    .....+...+. .-+.+++..
T Consensus      1063 ~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv-~eL~npN~~ 1141 (3550)
T KOG0889|consen 1063 SMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLV-LELFNPNSD 1141 (3550)
T ss_pred             hchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-HHHcCCchH
Confidence            776432   2334444555555555544333        2233333322222211    33345555555 667788889


Q ss_pred             cccccccCchhHHHHHHHHHHHHHhhcCCcccccchh
Q 006898          570 VGFIFAAFPLVLFSCLALNYCHRWWRKQSVPVWLSSL  606 (626)
Q Consensus       570 vr~~~~~~~~~~~a~~al~~~~~~~~~~~~~~~~~~~  606 (626)
                      ||.         ++...|..+.+..+..-...+....
T Consensus      1142 VR~---------~~~~~L~~i~~~s~~~v~~L~~p~K 1169 (3550)
T KOG0889|consen 1142 VRE---------FSQKLLRLISELSGKSVVKLLEPFK 1169 (3550)
T ss_pred             HHH---------HHHHHHHHHHHHcCCcHHHHHHHHH
Confidence            999         9999999998777555554444333

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=92.38  E-value=3  Score=36.07  Aligned_cols=120  Identities=16%  Similarity=0.130  Sum_probs=59.4

Q ss_pred             hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHH---HHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHhChHH
Q 006898          396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDD---KLGALCMQWLQDKV-YSIRDAAANNLKRLAEEFGPEW  471 (626)
Q Consensus       396 ~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~---~l~p~l~~~l~d~~-~~VR~~a~~~l~~l~~~~~~~~  471 (626)
                      ......+.+++++++..-|..++..+..+.+..+.+.+.+   ..+..++..++.++ ..++..++.++..+.....+. 
T Consensus        24 ~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~-  102 (165)
T PF08167_consen   24 HKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK-  102 (165)
T ss_pred             HHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC-
Confidence            4555555666666666666666666666665555554432   23333444443322 234444445544444333221 


Q ss_pred             HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhcc
Q 006898          472 AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  547 (626)
Q Consensus       472 ~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~  547 (626)
                                      ..-.|+.+.-             ..+.+++.++.++++  ..+...++.+|..+...++.
T Consensus       103 ----------------p~l~Rei~tp-------------~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt  147 (165)
T PF08167_consen  103 ----------------PTLTREIATP-------------NLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT  147 (165)
T ss_pred             ----------------CchHHHHhhc-------------cHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence                            0001111111             123344555555554  66677778888887776654

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=92.05  E-value=2.4  Score=35.79  Aligned_cols=141  Identities=20%  Similarity=0.213  Sum_probs=81.8

Q ss_pred             HHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCC-CCH
Q 006898          177 PMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD-KSW  255 (626)
Q Consensus       177 ~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d-~~~  255 (626)
                      +-||...+.++..++...-++. |+.+++.+.+.++.+ +......+..|..+.+.+..             ..++ ...
T Consensus         2 ~~i~~kl~~~l~~i~~~~~P~~-Wp~~l~~l~~~~~~~-~~~~~~~L~iL~~l~eEi~~-------------~~~~~~~~   66 (148)
T PF08389_consen    2 PFIRNKLAQVLAEIAKRDWPQQ-WPDFLEDLLQLLQSS-PQHLELVLRILRILPEEITD-------------FRRSSLSQ   66 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTT-STTHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHT-------------SHCCHSHH
T ss_pred             hhHHHHHHHHHHHHHHHHChhh-CchHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHh-------------hhchhhhH
Confidence            4578889999999988775543 567778888777764 55555666666665543321             0011 112


Q ss_pred             HHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCC----ChHHHHHHHHHhHHHHHHhhChHHHHH-hhHHHHHHhccC
Q 006898          256 RVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD----NEAEVRIAAAGKVTKFCRILNPELAIQ-HILPCVKELSSD  330 (626)
Q Consensus       256 ~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d----~~~~vr~~a~~~l~~l~~~~~~~~~~~-~l~~~l~~l~~d  330 (626)
                      ..|...-..+..-.         +.++..+.+.+..    ...++...+++++..+....+...+.+ .+++.+.+++.+
T Consensus        67 ~r~~~l~~~l~~~~---------~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~  137 (148)
T PF08389_consen   67 ERRRELKDALRSNS---------PDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQS  137 (148)
T ss_dssp             HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHH---------HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCC
Confidence            22333333333221         2344444444432    227788888888888888777665444 477777777754


Q ss_pred             CCHHHHHHHHHHH
Q 006898          331 SSQHVRSALASVI  343 (626)
Q Consensus       331 ~~~~vr~~~~~~l  343 (626)
                      ++  .+.++++++
T Consensus       138 ~~--~~~~A~~cl  148 (148)
T PF08389_consen  138 PE--LREAAAECL  148 (148)
T ss_dssp             CC--CHHHHHHHH
T ss_pred             HH--HHHHHHHhC
Confidence            43  366666553

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=91.88  E-value=0.3  Score=30.54  Aligned_cols=30  Identities=20%  Similarity=0.255  Sum_probs=22.9

Q ss_pred             hcHHHHHhhhCCCCCchHHHHHHHHHHHHH
Q 006898          513 SRLLPVVINASKDRVPNIKFNVAKVLQSLI  542 (626)
Q Consensus       513 ~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~  542 (626)
                      ...+|.|..+++++++.||..|+++|+++.
T Consensus        11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen   11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            456777888888888888888888887764

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]

Probab=91.82  E-value=20  Score=38.17  Aligned_cols=147  Identities=16%  Similarity=0.153  Sum_probs=84.7

Q ss_pred             HHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHh---cCCChHHHHHHHHHHHHHHHhhChhhH------------HHHH
Q 006898          373 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA---EDRHWRVRLAIIEYIPLLASQLGVGFF------------DDKL  437 (626)
Q Consensus       373 ~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~---~~~~~~~r~~~~~~l~~l~~~~~~~~~------------~~~l  437 (626)
                      ++|...-..+..+ ..++++.+...+-..+...+   ++.+|..-+.++..+-.+++++....+            ...+
T Consensus       414 e~RkkLk~fqdti-~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~  492 (980)
T KOG2021|consen  414 EVRKKLKNFQDTI-VVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLN  492 (980)
T ss_pred             HHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHH
Confidence            4555443333333 33455544444444444333   456899999999999999887643221            1223


Q ss_pred             HHHHHH--HhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhh------hcCCChHHHHHHHHHHHHhccccChH
Q 006898          438 GALCMQ--WLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM------INNPHYLYRMTILRAISLLAPVMGSE  509 (626)
Q Consensus       438 ~p~l~~--~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~------l~~~~~~vR~~a~~~l~~i~~~~~~~  509 (626)
                      ++.+..  ....+++.|...-.+.+......+..+   ..-+|.++..      +.+.+..||..+...+.++++.+...
T Consensus       493 ~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~e---sq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkq  569 (980)
T KOG2021|consen  493 ELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTE---SQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQ  569 (980)
T ss_pred             HHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcc---hhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHH
Confidence            333322  234566677766666666655444322   2345555553      44568999999999999998866543


Q ss_pred             --HhhhcHHHHHhhhC
Q 006898          510 --ITCSRLLPVVINAS  523 (626)
Q Consensus       510 --~~~~~~l~~l~~~l  523 (626)
                        .+.+.++..+..++
T Consensus       570 lvpfie~iln~iqdlL  585 (980)
T KOG2021|consen  570 LVPFIEEILNKIQDLL  585 (980)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence              24455555555544

>PF14868 DUF4487: Domain of unknown function (DUF4487)

Probab=91.82  E-value=19  Score=37.83  Aligned_cols=52  Identities=10%  Similarity=-0.157  Sum_probs=35.9

Q ss_pred             HHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhC
Q 006898          144 SACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVE  195 (626)
Q Consensus       144 ~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~  195 (626)
                      ..+..+..+....++...+++-..+++.+=+++.....-+.....-+++...
T Consensus       247 ~vl~~Lctfi~~~~~s~f~eLE~~LL~~vL~~~~l~~lLa~DvWCFlaRygt  298 (559)
T PF14868_consen  247 HVLVHLCTFIASLSPSAFPELERFLLENVLHPHFLCSLLAMDVWCFLARYGT  298 (559)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhcch
Confidence            3445555555556777888888888877667888888877777766665433

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.80  E-value=22  Score=38.61  Aligned_cols=339  Identities=12%  Similarity=0.068  Sum_probs=175.7

Q ss_pred             hhhHHHHHHHhhcCCc-----hhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhc-----CCCCHHHHHHHHHHHHHHH
Q 006898          200 KTDIMSIFEDLTQDDQ-----DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS-----QDKSWRVRYMVANQLYELC  269 (626)
Q Consensus       200 ~~~ll~~l~~l~~d~~-----~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~-----~d~~~~vR~~a~~~l~~l~  269 (626)
                      .+.+...+.+.+.|.+     +..-.+++..+..+++..+...  ..-+|-+.+.+     +-.++..-.++...+|..+
T Consensus       460 l~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~--~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s  537 (982)
T KOG2022|consen  460 LDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETE--STWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLS  537 (982)
T ss_pred             HHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcch--hHHHHHHHHhccccccccCChhHHHHHHHHHHHHH
Confidence            3444555555555554     4566788888999998888742  22234333322     2236666677788999998


Q ss_pred             HHhCCCc-cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChH--HHHHhhHHHHHHhccC--CCHHHHHHHHHHHH
Q 006898          270 EAVGPEP-TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSD--SSQHVRSALASVIM  344 (626)
Q Consensus       270 ~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d--~~~~vr~~~~~~l~  344 (626)
                      ..++... ..+..+|.+.+.++.+  +.-..++.++..+++.+..+  .+...++..+.+.+..  -....|..+.+++|
T Consensus       538 ~~l~e~P~~ln~sl~~L~~~Lh~s--k~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIG  615 (982)
T KOG2022|consen  538 NWLGEHPMYLNPSLPLLFQGLHNS--KESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIG  615 (982)
T ss_pred             HHHhcCCcccCchHHHHHHHhcCc--hHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHH
Confidence            8887653 4457788888888744  34455677788888866543  2234444444444432  23467888888888


Q ss_pred             hhhhhhcHHHHHHhHHH---HHHHhhc------CCCHHHHHHHHHhh---HHHHhhhc----------------------
Q 006898          345 GMAPLLGKDATIEQLLP---IFLSLLK------DEFPDVRLNIISKL---DQVNQVIG----------------------  390 (626)
Q Consensus       345 ~l~~~~~~~~~~~~l~~---~l~~~l~------d~~~~vr~~a~~~L---~~~~~~~~----------------------  390 (626)
                      .+......+.....++.   .+...++      -++++-+...+-.+   +.+...+.                      
T Consensus       616 yvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~  695 (982)
T KOG2022|consen  616 YVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFP  695 (982)
T ss_pred             HHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCC
Confidence            88776665544333322   2222221      12233333222222   22221110                      


Q ss_pred             hhhHHhhHHHHHHHHhc--CCChHHHHHHHHHHHHHHHhhChhhHHHH----HHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 006898          391 IDLLSQSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVGFFDDK----LGALCMQWLQDKVYSIRDAAANNLKRLA  464 (626)
Q Consensus       391 ~~~~~~~i~~~l~~~~~--~~~~~~r~~~~~~l~~l~~~~~~~~~~~~----l~p~l~~~l~d~~~~VR~~a~~~l~~l~  464 (626)
                      .-.+..+++|.+.+...  -.+..+-.+++..+..-....+.. |...    +.+.+.+....+...    ++.....+.
T Consensus       696 il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~s-F~~p~l~~l~~Fi~r~~~~~~a~----tl~l~~~~l  770 (982)
T KOG2022|consen  696 ILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTS-FPEPMLPSLCPFIVRFLTSCLAV----TLSLIAACL  770 (982)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhcccccccc-chhhhHHHHHHHHHHhccchHHH----HHHHHHHHH
Confidence            01123455666555432  112223333333332222333333 3333    334444422221111    111111111


Q ss_pred             -HHhChHHH-------hhhhHHHHHhhhc----CCChHHHHHHHHHHHHhccccCh------HHhhhcHHHHHhhhCCCC
Q 006898          465 -EEFGPEWA-------MQHITPQVLEMIN----NPHYLYRMTILRAISLLAPVMGS------EITCSRLLPVVINASKDR  526 (626)
Q Consensus       465 -~~~~~~~~-------~~~il~~l~~~l~----~~~~~vR~~a~~~l~~i~~~~~~------~~~~~~~l~~l~~~l~d~  526 (626)
                       ..++....       ....+.....++.    .++++.-.....++.++.+..+.      ..+..-+++....+++.+
T Consensus       771 ~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts~i~~~a~~ll~~p  850 (982)
T KOG2022|consen  771 LAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTSLILICAFILLNSP  850 (982)
T ss_pred             HhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHHHHHHHHHHhcCCC
Confidence             01111100       1111222222222    24677777777788887765432      246677888888899999


Q ss_pred             CchHHHHHHHHHHHHHhhhcc
Q 006898          527 VPNIKFNVAKVLQSLIPIVDQ  547 (626)
Q Consensus       527 ~~~vR~~a~~~l~~i~~~~~~  547 (626)
                      .+---.++++-+..+....++
T Consensus       851 E~~~i~aa~qF~t~~~~~~~s  871 (982)
T KOG2022|consen  851 EPTTIRAASQFLTALATYATS  871 (982)
T ss_pred             ccHHHHHHHHHHHHHHhhccc
Confidence            988777888988888776555

>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]

Probab=91.72  E-value=21  Score=38.12  Aligned_cols=124  Identities=13%  Similarity=0.104  Sum_probs=81.0

Q ss_pred             HhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhh
Q 006898          318 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS  397 (626)
Q Consensus       318 ~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~  397 (626)
                      ..++..|..+..|+-..|+..++..+..+...-+++  ...++-.+++-|.|++..+-..|.-.|..+....+.=  .-.
T Consensus       303 ~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEq--E~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnM--K~V  378 (988)
T KOG2038|consen  303 FRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQ--ENNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNM--KIV  378 (988)
T ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHH--HHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcc--eee
Confidence            455677778888888899988888777776544433  3457778888899998888777777776664433221  123


Q ss_pred             HHHHHHHHhcCCC--hHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHh
Q 006898          398 LLPAIVELAEDRH--WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL  445 (626)
Q Consensus       398 i~~~l~~~~~~~~--~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l  445 (626)
                      ++..+.+++--++  .+-...++.++.++.-......+.+.++.+++.++
T Consensus       379 vi~EIer~~FRpn~~~ra~Yyav~fLnQ~~Lshke~dvAnrLi~iYF~lF  428 (988)
T KOG2038|consen  379 VIDEIERLAFRPNVSERAHYYAVIFLNQMKLSHKESDVANRLISIYFSLF  428 (988)
T ss_pred             hHHHHHHHHcccCccccceeehhhhhhhhHhccchHHHHHHHHHHHHHHH
Confidence            5566666665443  45555577777776655555556666776665554

>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=91.52  E-value=2.8  Score=42.47  Aligned_cols=141  Identities=14%  Similarity=0.211  Sum_probs=86.3

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhhcc---c----
Q 006898          162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQ-DSVRLLAVEGCAALGKL---L----  233 (626)
Q Consensus       162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~-~~vr~~a~~~l~~l~~~---~----  233 (626)
                      +-...-+.+.+.+.++..|+.|++.|..       +.-.+.++|+|...+.+.. ..+-...+..|..+...   +    
T Consensus       206 QlYy~~It~a~~g~~~~~r~eAL~sL~T-------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np  278 (576)
T KOG2549|consen  206 QLYYKEITEACTGSDEPLRQEALQSLET-------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNP  278 (576)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhhcc-------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCC
Confidence            3344455555666788899988887754       3334668888888776652 12222222223222221   1    


Q ss_pred             --CchhhhhhhHHHHHHhc----------CCCCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcCCCh--HHHH
Q 006898          234 --EPQDCVAHILPVIVNFS----------QDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNE--AEVR  297 (626)
Q Consensus       234 --~~~~~~~~i~~~l~~~~----------~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~--~~vr  297 (626)
                        --+.|...++|.+..++          .|..|.+|--++..+..++..++...  ....+...+.+.+.|+.  +...
T Consensus       279 ~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~  358 (576)
T KOG2549|consen  279 NIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTH  358 (576)
T ss_pred             ccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhh
Confidence              11567777777765432          35688999999999999888776432  22345556666666653  5677


Q ss_pred             HHHHHhHHHHHH
Q 006898          298 IAAAGKVTKFCR  309 (626)
Q Consensus       298 ~~a~~~l~~l~~  309 (626)
                      -+++..|..++.
T Consensus       359 YGai~gL~~lg~  370 (576)
T KOG2549|consen  359 YGAIAGLSELGH  370 (576)
T ss_pred             hhHHHHHHHhhh
Confidence            778877777765

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=91.49  E-value=12  Score=37.17  Aligned_cols=145  Identities=14%  Similarity=0.135  Sum_probs=75.9

Q ss_pred             HHHHHHhhcCCC--HHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcC-CChHHHHHHHHHHHHHHHhhChh---hH
Q 006898          360 LPIFLSLLKDEF--PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVG---FF  433 (626)
Q Consensus       360 ~~~l~~~l~d~~--~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~~~---~~  433 (626)
                      +..++.++..++  ..||..+.+.|..+...-.-+.....-+..+..+.+. +........+..++.+.+.....   .+
T Consensus       182 lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~Lv  261 (832)
T KOG3678|consen  182 LDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRLV  261 (832)
T ss_pred             HHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            344556665443  4678888888877755433333322223344444432 22344444555566655543221   11


Q ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHH----HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhcc
Q 006898          434 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAP  504 (626)
Q Consensus       434 ~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~----~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~  504 (626)
                      ....+..++-+..-.++.+-..++-+|+.+.-.-+...    ....+-..+..+....+.-.|..+|-++..++.
T Consensus       262 aa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat  336 (832)
T KOG3678|consen  262 AAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLAT  336 (832)
T ss_pred             hhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhh
Confidence            12223333344444557766667777787766544332    123333334444555677788888888877753

>KOG2149 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.34  E-value=1.9  Score=41.91  Aligned_cols=108  Identities=21%  Similarity=0.232  Sum_probs=84.0

Q ss_pred             HHHHhcCCchHHHHHHHHHHHHHHHHhChH--HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChH---HhhhcH
Q 006898          441 CMQWLQDKVYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSRL  515 (626)
Q Consensus       441 l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~---~~~~~~  515 (626)
                      ++..+...+..||..|...+..+.......  .....+++.+..+..|.+..+|....+.+..++....++   .+...+
T Consensus        63 Ll~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~  142 (393)
T KOG2149|consen   63 LLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLL  142 (393)
T ss_pred             HHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHH
Confidence            444566778889999999888887763332  134667788888889999999999999888876655443   356678


Q ss_pred             HHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc
Q 006898          516 LPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS  548 (626)
Q Consensus       516 l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~  548 (626)
                      +|++...+..-.+++|.-+...+..+...+++.
T Consensus       143 ~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~  175 (393)
T KOG2149|consen  143 MPYISSAMTHITPEIQEDSLKFLSLLLERYPDT  175 (393)
T ss_pred             HHHHHHHHhhccHHHHHhhHHHHHHHHHHcChH
Confidence            889999999999999999999999988888663

>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins []

Probab=91.24  E-value=7.6  Score=34.61  Aligned_cols=106  Identities=15%  Similarity=0.196  Sum_probs=50.0

Q ss_pred             HHHHHHHHHhhhhhhcHH--HHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHH
Q 006898          336 RSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRV  413 (626)
Q Consensus       336 r~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~  413 (626)
                      -..+...++.+...+|..  .....++..+..+-.+++...|..+-.+++.....+|++.+.+ ++|.-... .+....-
T Consensus        17 w~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~-~lPLnl~~-~~~~~~~   94 (198)
T PF08161_consen   17 WPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLS-ILPLNLDN-ADDSQPG   94 (198)
T ss_pred             HHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHH-HCCCCccC-CCcCCcc
Confidence            333444444444444432  1222333334444455566777777777887777777765532 33321111 1111222


Q ss_pred             HHHHHHHHHHHHHhhChhhHHHHHHHHHHH
Q 006898          414 RLAIIEYIPLLASQLGVGFFDDKLGALCMQ  443 (626)
Q Consensus       414 r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~  443 (626)
                      |.-.+-.+..-.....-.+|.++++|....
T Consensus        95 raWLLPlLr~~i~~~~L~fF~~~~lPla~~  124 (198)
T PF08161_consen   95 RAWLLPLLRDHIRNASLSFFVEEFLPLARR  124 (198)
T ss_pred             cchhHHHHHHhccCCChHHHHHHHHHHHHH
Confidence            222333333222233445677777776544

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=90.98  E-value=2.2  Score=35.80  Aligned_cols=75  Identities=11%  Similarity=0.146  Sum_probs=60.3

Q ss_pred             hhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHh----hhcHHHHHhhhCCC-CCchHHHHHHHHHHHHHhhhccc
Q 006898          474 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKD-RVPNIKFNVAKVLQSLIPIVDQS  548 (626)
Q Consensus       474 ~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~----~~~~l~~l~~~l~d-~~~~vR~~a~~~l~~i~~~~~~~  548 (626)
                      ...+..|.+.+.++|+.+...|+..+..+++.||..+.    ...++..|.+++++ ..+.||..++..+..+...++++
T Consensus        36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~  115 (144)
T cd03568          36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKND  115 (144)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence            44566677777889999999999999999999997643    34677778888877 77899999999999998877654

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=90.97  E-value=4.5  Score=37.56  Aligned_cols=53  Identities=11%  Similarity=0.123  Sum_probs=30.4

Q ss_pred             HHHHHHHHHhhHHHHhhhchhhHHhhHHHHH----HHHh--cCCChHHHHHHHHHHHHHHH
Q 006898          372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAI----VELA--EDRHWRVRLAIIEYIPLLAS  426 (626)
Q Consensus       372 ~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l----~~~~--~~~~~~~r~~~~~~l~~l~~  426 (626)
                      ..+|.-|+..++.++..++....  .+-|.+    .+..  .++.+.....++..+..+.+
T Consensus       301 ~alRd~AA~ll~yV~~~F~~~Yk--tLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~k  359 (450)
T COG5095         301 YALRDVAADLLKYVFSNFSSSYK--TLKPRVTRTLLKAFLDREKTESTQYGALKGLSILSK  359 (450)
T ss_pred             HHHHHHHHHHHHHHHhhhhHhhh--hhchHHHHHHHHHHHhcccccchhhhhhhhhhhhch
Confidence            45888888888888888776542  233333    2222  22345555666666655443

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.95  E-value=14  Score=34.78  Aligned_cols=100  Identities=16%  Similarity=0.229  Sum_probs=56.0

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcc---ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChH-HHHHhhH
Q 006898          246 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPT---RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-LAIQHIL  321 (626)
Q Consensus       246 l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~  321 (626)
                      +..++.+.++.||..++..+..+... |...+   ....++.+.++++|..+  .+.|+.++..++..-+-. .+.+.++
T Consensus         8 lv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~~~   84 (353)
T KOG2973|consen    8 LVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQDLL   84 (353)
T ss_pred             HHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            34455666666666666554443322 11111   23567777778877766  445566666666543222 2233355


Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHhhhh
Q 006898          322 PCVKELSSDSSQHVRSALASVIMGMAP  348 (626)
Q Consensus       322 ~~l~~l~~d~~~~vr~~~~~~l~~l~~  348 (626)
                      ..+...+.|+.|..-..++..+.++++
T Consensus        85 k~l~~~~~~p~~~lad~~cmlL~NLs~  111 (353)
T KOG2973|consen   85 KVLMDMLTDPQSPLADLICMLLSNLSR  111 (353)
T ss_pred             HHHHHHhcCcccchHHHHHHHHHHhcc
Confidence            556666677766666666666666654

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=90.83  E-value=6  Score=33.15  Aligned_cols=74  Identities=14%  Similarity=0.071  Sum_probs=49.3

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccc----hhhhHHHHHHHhhcC-CchhHHHHHHHHHHHhhcccCc
Q 006898          162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH----LKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEP  235 (626)
Q Consensus       162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~ll~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~  235 (626)
                      .+.+..+.+-+.+.++.|...++..+..++++.|...    ....++..+.+++.+ ....|+...+..+...+..+..
T Consensus        36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~  114 (144)
T cd03568          36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN  114 (144)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence            3445555566677778888888888888888877632    123456666666666 4667777777777777666654

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=90.78  E-value=8.5  Score=37.48  Aligned_cols=67  Identities=15%  Similarity=0.114  Sum_probs=35.9

Q ss_pred             HHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchh------hhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 006898          203 IMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD------CVAHILPVIVNFSQDKSWRVRYMVANQLYELC  269 (626)
Q Consensus       203 ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~------~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~  269 (626)
                      ....+.++++.+|+.++..++..+..+....+...      ..+.++.++....+..+..+...++.+++.+.
T Consensus       106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL  178 (312)
T PF03224_consen  106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL  178 (312)
T ss_dssp             -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh
Confidence            34445557777888899999999998887766522      22233333333333344455566666666664

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.67  E-value=34  Score=39.83  Aligned_cols=93  Identities=14%  Similarity=0.184  Sum_probs=50.5

Q ss_pred             CchhHHHHHHHHHHHhhcccCchhh---hhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHh
Q 006898          214 DQDSVRLLAVEGCAALGKLLEPQDC---VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRL  288 (626)
Q Consensus       214 ~~~~vr~~a~~~l~~l~~~~~~~~~---~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~  288 (626)
                      .|+..|..|+..+..+.+....+..   .+.....+.++..|.+..||...-..+..+...+++..  +...++|...-.
T Consensus        53 kD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~li~~wl~~  132 (1312)
T KOG0803|consen   53 RDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSLIPPWLGG  132 (1312)
T ss_pred             cChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhhe
Confidence            4455566666666665554443222   12222334556667777777777666666666555442  233556666666


Q ss_pred             cCCChHHHHHHHHHhHHH
Q 006898          289 LRDNEAEVRIAAAGKVTK  306 (626)
Q Consensus       289 l~d~~~~vr~~a~~~l~~  306 (626)
                      ..|.+..|-.+|...+..
T Consensus       133 ~~d~~~~vs~aa~~sf~~  150 (1312)
T KOG0803|consen  133 QFDLDYPVSEAAKASFKD  150 (1312)
T ss_pred             ecccchHHHHHHHHHHHh
Confidence            666666665555554433

>KOG2149 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.67  E-value=2.9  Score=40.76  Aligned_cols=107  Identities=16%  Similarity=0.071  Sum_probs=77.8

Q ss_pred             HHHHhcCCCCHHHHHHHHHhHHHHHHhhCcc--chhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchh---hhhh
Q 006898          167 IYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD---CVAH  241 (626)
Q Consensus       167 ~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~  241 (626)
                      -++..+++.+..||+.+...+..+....+..  .....+++.+..+..|.+..||....+.+..++....++.   ....
T Consensus        62 eLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l  141 (393)
T KOG2149|consen   62 ELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSL  141 (393)
T ss_pred             HHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHH
Confidence            3445568888999999999998887773321  1233466777788889999999999998888776655533   4455


Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC
Q 006898          242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVG  273 (626)
Q Consensus       242 i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~  273 (626)
                      +++++...+.+-.+.+|..+...+..+...++
T Consensus       142 ~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~  173 (393)
T KOG2149|consen  142 LMPYISSAMTHITPEIQEDSLKFLSLLLERYP  173 (393)
T ss_pred             HHHHHHHHHhhccHHHHHhhHHHHHHHHHHcC
Confidence            67777777777788888888777777776654

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.57  E-value=38  Score=39.02  Aligned_cols=213  Identities=12%  Similarity=0.097  Sum_probs=117.7

Q ss_pred             cCCccchhHHHhhHhHHhcCCCChH---HHHHHHHHHHHhcCCC---CHHHHHHHHHhHHHHHHhhCc---cchhhhHHH
Q 006898          135 AGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDD---MPMVRRSAASNLGKFAATVEP---AHLKTDIMS  205 (626)
Q Consensus       135 ~~~~~~~r~~a~~~l~~~~~~~~~~---~~~~l~~~l~~l~~d~---~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~  205 (626)
                      ..+...+|.....++-.+.+..++.   .+..+.+.+-...+..   ...+-+.+..++.-+...+-+   ..-...+++
T Consensus       852 s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lid  931 (1610)
T KOG1848|consen  852 SSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLID  931 (1610)
T ss_pred             cCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHH
Confidence            4445667887778777777766652   2555555555443322   233333344444444433221   111223344


Q ss_pred             HHHHhh-cCCchhHHHHHHHHHHHhhcccCc-----------------------------hhhhhhhHHHHHHhcCCCCH
Q 006898          206 IFEDLT-QDDQDSVRLLAVEGCAALGKLLEP-----------------------------QDCVAHILPVIVNFSQDKSW  255 (626)
Q Consensus       206 ~l~~l~-~d~~~~vr~~a~~~l~~l~~~~~~-----------------------------~~~~~~i~~~l~~~~~d~~~  255 (626)
                      .+.... +.+|-.+-..|+..+-.+.+.+..                             +..+-.++..+.+++.|...
T Consensus       932 tl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~dsr~ 1011 (1610)
T KOG1848|consen  932 TLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDSRA 1011 (1610)
T ss_pred             HHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhccchH
Confidence            333332 223344545555555444443321                             12233456677889999999


Q ss_pred             HHHHHHHHHHHHHHHHhCCCc----cccchHHHHHHhcC-------CC--hHHHH----HHHHHhHHHHHHhhC------
Q 006898          256 RVRYMVANQLYELCEAVGPEP----TRMDLVPAYVRLLR-------DN--EAEVR----IAAAGKVTKFCRILN------  312 (626)
Q Consensus       256 ~vR~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~-------d~--~~~vr----~~a~~~l~~l~~~~~------  312 (626)
                      .||..|++++-++...-|...    +..-+..++..++.       ++  ..+++    +...-.++.+++.+.      
T Consensus      1012 eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~fk~l 1091 (1610)
T KOG1848|consen 1012 EVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSENFKLL 1091 (1610)
T ss_pred             HHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            999999999988876655443    22233344444443       11  01221    223444455554332      


Q ss_pred             -----hHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhh
Q 006898          313 -----PELAIQHILPCVKELSSDSSQHVRSALASVIMGMA  347 (626)
Q Consensus       313 -----~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~  347 (626)
                           --..++.++..+..+..+.++.+.-+++.++..+.
T Consensus      1092 lnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1092 LNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELL 1131 (1610)
T ss_pred             HhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHH
Confidence                 22456888899999999999999999988877654

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=90.44  E-value=1.1  Score=35.58  Aligned_cols=67  Identities=18%  Similarity=0.209  Sum_probs=44.8

Q ss_pred             HHHHHHHhc-CCCCHHHHHHHHHhHHHHHHhhCcc-chh--hhHHHHHHHhhcCCchhHHHHHHHHHHHhh
Q 006898          164 LRSIYTQLC-QDDMPMVRRSAASNLGKFAATVEPA-HLK--TDIMSIFEDLTQDDQDSVRLLAVEGCAALG  230 (626)
Q Consensus       164 l~~~l~~l~-~d~~~~vR~~a~~~l~~l~~~~~~~-~~~--~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~  230 (626)
                      ++..|.+++ .+.++.+-..||.-+|.+++..+.- .+.  -..-..+++++++++++||..|+.++..+.
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            444555555 3446777788888899999887541 111  124566788888899999998888887654

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=90.30  E-value=7.7  Score=32.63  Aligned_cols=48  Identities=13%  Similarity=0.097  Sum_probs=25.5

Q ss_pred             hHHHHHHHHHHHHhccccChHHhhh-cHHHHHhhhCCCCCchHHHHHHHHH
Q 006898          489 YLYRMTILRAISLLAPVMGSEITCS-RLLPVVINASKDRVPNIKFNVAKVL  538 (626)
Q Consensus       489 ~~vR~~a~~~l~~i~~~~~~~~~~~-~~l~~l~~~l~d~~~~vR~~a~~~l  538 (626)
                      ......++.+++....-.+.+.+.+ .+++.+...+.++.-  |..|+++|
T Consensus       100 ~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~--~~~A~~cl  148 (148)
T PF08389_consen  100 EELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPEL--REAAAECL  148 (148)
T ss_dssp             HHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCC--HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHH--HHHHHHhC
Confidence            5556666666666665555443322 356666666655555  55555543

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=90.25  E-value=5.6  Score=33.26  Aligned_cols=78  Identities=13%  Similarity=0.130  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccch----hhhHHHHHHHhhcCCc-h-h--HHHHHHHHHHHhhc
Q 006898          160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHL----KTDIMSIFEDLTQDDQ-D-S--VRLLAVEGCAALGK  231 (626)
Q Consensus       160 ~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~ll~~l~~l~~d~~-~-~--vr~~a~~~l~~l~~  231 (626)
                      ...+....+.+-+.+.++.+...++..+..++.+.|....    ...++..+..++.+.. . .  ||..++..+...+.
T Consensus        39 ~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~  118 (140)
T PF00790_consen   39 GAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE  118 (140)
T ss_dssp             HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence            3456666777778889999999999999999998876322    2346667777665542 2 2  89999999988888


Q ss_pred             ccCchh
Q 006898          232 LLEPQD  237 (626)
Q Consensus       232 ~~~~~~  237 (626)
                      .++...
T Consensus       119 ~f~~~~  124 (140)
T PF00790_consen  119 AFKSDP  124 (140)
T ss_dssp             HTTTST
T ss_pred             HHCCCC
Confidence            875533

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>PF05536 Neurochondrin: Neurochondrin

Probab=90.17  E-value=28  Score=36.85  Aligned_cols=173  Identities=12%  Similarity=0.005  Sum_probs=89.3

Q ss_pred             hHHHHHHHHHHHHHHhhcChh----hHHHhHHHHHHHHhcCCcc-chhHHHhhHhHHhcCCCCh-H--HHHHHHHHHHHh
Q 006898          100 TCVRDKAVESLCRIGSQMRES----DLVDWYIPLVKRLAAGEWF-TARVSACGLFHIAYPSAPD-I--LKTELRSIYTQL  171 (626)
Q Consensus       100 ~~vR~~a~~~l~~i~~~~~~~----~~~~~l~~~l~~l~~~~~~-~~r~~a~~~l~~~~~~~~~-~--~~~~l~~~l~~l  171 (626)
                      ...+..|+..|..++.  +++    .-.-.-+|.+.+....... ..-..+.+++..++.+-.. .  .....++.+...
T Consensus        71 ~~~~~LavsvL~~f~~--~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei  148 (543)
T PF05536_consen   71 EEYLSLAVSVLAAFCR--DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEI  148 (543)
T ss_pred             HHHHHHHHHHHHHHcC--ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHH
Confidence            3445555555555554  221    1111234555555444433 4444566666666533211 1  112233344444


Q ss_pred             cCCCCHHHHHHHHHhHHHHHHhhCccch------hhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc--------hh
Q 006898          172 CQDDMPMVRRSAASNLGKFAATVEPAHL------KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--------QD  237 (626)
Q Consensus       172 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~------~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--------~~  237 (626)
                      ..+ .+.....+...+..+....+.+.+      ...+++.+...........+-..+..|..+....+.        ..
T Consensus       149 ~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~  227 (543)
T PF05536_consen  149 IPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPK  227 (543)
T ss_pred             HHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhh
Confidence            333 455667777777776665553211      123444444444444445555667777776665531        12


Q ss_pred             hhhhhHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhCCC
Q 006898          238 CVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPE  275 (626)
Q Consensus       238 ~~~~i~~~l~~~~~d-~~~~vR~~a~~~l~~l~~~~~~~  275 (626)
                      ....+...+...+.+ ..+.-|..+....+.+....|.+
T Consensus       228 W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~  266 (543)
T PF05536_consen  228 WLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPE  266 (543)
T ss_pred             hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChH
Confidence            234455556655544 46677888888888888877754

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=90.14  E-value=0.72  Score=28.80  Aligned_cols=29  Identities=24%  Similarity=0.088  Sum_probs=18.2

Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 006898          436 KLGALCMQWLQDKVYSIRDAAANNLKRLA  464 (626)
Q Consensus       436 ~l~p~l~~~l~d~~~~VR~~a~~~l~~l~  464 (626)
                      ..+|.+..++.+.+..||+.|+++++.++
T Consensus        12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen   12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            35566666666666666666666666554

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.13  E-value=41  Score=38.75  Aligned_cols=218  Identities=16%  Similarity=0.187  Sum_probs=118.3

Q ss_pred             HhcCCCCHHHHHHHHHhHHHHHHhhCccc--hhhhHHHHHHHhhcCC---chhHHHHHHHHHHHhhcccCc---hhhhhh
Q 006898          170 QLCQDDMPMVRRSAASNLGKFAATVEPAH--LKTDIMSIFEDLTQDD---QDSVRLLAVEGCAALGKLLEP---QDCVAH  241 (626)
Q Consensus       170 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~ll~~l~~l~~d~---~~~vr~~a~~~l~~l~~~~~~---~~~~~~  241 (626)
                      ..+..+..+||.....++-.+.+..|.-.  -|+.+...+.......   ...+-..+..++.-+...+-.   ......
T Consensus       849 ~~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~  928 (1610)
T KOG1848|consen  849 SDNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILD  928 (1610)
T ss_pred             HHhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHH
Confidence            34556667889998999999988877621  1555666655443322   223333455555444433211   222333


Q ss_pred             hHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCC-------C------------------cccc----chHHHHHHhcCC
Q 006898          242 ILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP-------E------------------PTRM----DLVPAYVRLLRD  291 (626)
Q Consensus       242 i~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~-------~------------------~~~~----~l~~~l~~~l~d  291 (626)
                      ++..+..++. ..+..+--+++..+-.+...+..       +                  ..++    .++..+.+++.|
T Consensus       929 lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~d 1008 (1610)
T KOG1848|consen  929 LIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCED 1008 (1610)
T ss_pred             HHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhcc
Confidence            4444433332 22333444444444333322211       0                  0011    255666777889


Q ss_pred             ChHHHHHHHHHhHHHHHHhh----ChHH----HHHhhHHHHHHhc-c-CCCH---HH----HHHHHHHHHhhhhhhcHHH
Q 006898          292 NEAEVRIAAAGKVTKFCRIL----NPEL----AIQHILPCVKELS-S-DSSQ---HV----RSALASVIMGMAPLLGKDA  354 (626)
Q Consensus       292 ~~~~vr~~a~~~l~~l~~~~----~~~~----~~~~l~~~l~~l~-~-d~~~---~v----r~~~~~~l~~l~~~~~~~~  354 (626)
                      +.++||.+|++++-++...-    +...    .+..++|.+-..- + -++|   .+    -+..+-.++.+++.|...+
T Consensus      1009 sr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~f 1088 (1610)
T KOG1848|consen 1009 SRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSENF 1088 (1610)
T ss_pred             chHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHHH
Confidence            99999999999998876643    3332    3445556553110 0 0111   11    2234555666666554321


Q ss_pred             -----------HHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHh
Q 006898          355 -----------TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ  387 (626)
Q Consensus       355 -----------~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~  387 (626)
                                 .-+.++..+.....|..+++..+++.++.++..
T Consensus      1089 k~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1089 KLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHH
Confidence                       123456666667779999999999999887653

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=90.13  E-value=2.4  Score=36.32  Aligned_cols=129  Identities=14%  Similarity=0.077  Sum_probs=75.5

Q ss_pred             hHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh---ChH-HHhhhhHHHHHhhhc-
Q 006898          411 WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF---GPE-WAMQHITPQVLEMIN-  485 (626)
Q Consensus       411 ~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~---~~~-~~~~~il~~l~~~l~-  485 (626)
                      ..+|..+.-.+.++.+ ..++.+.+.+.+.+...+.+...+-...+..++..+....   +.. +..+.+++.+..+.. 
T Consensus        19 ~~~r~~a~v~l~k~l~-~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~   97 (157)
T PF11701_consen   19 EEVRSHALVILSKLLD-AAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASR   97 (157)
T ss_dssp             CCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-
T ss_pred             HhHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhc
Confidence            3455555555555532 2223344555566666665555555555666665554322   111 123667778887777 


Q ss_pred             -CCChHHHHHHHHHHHHhccccC-hHHhhhcHHHHHhhhCC-CCCch-HHHHHHHHHHH
Q 006898          486 -NPHYLYRMTILRAISLLAPVMG-SEITCSRLLPVVINASK-DRVPN-IKFNVAKVLQS  540 (626)
Q Consensus       486 -~~~~~vR~~a~~~l~~i~~~~~-~~~~~~~~l~~l~~~l~-d~~~~-vR~~a~~~l~~  540 (626)
                       .++..+...+++++..-+-.-. ...+.....+.|....+ ++++. +|..|+-+|.+
T Consensus        98 ~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   98 KSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence             6778888899998887654222 23456777888888885 44455 78777766654

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.10  E-value=21  Score=41.46  Aligned_cols=112  Identities=15%  Similarity=0.162  Sum_probs=59.1

Q ss_pred             HHHHHHHHhHHHHHHhhChHHHHHhhH---------HHHHHhccCCCHHHHHHHHHHHHhhhhhhcHH---HHHHhHHHH
Q 006898          295 EVRIAAAGKVTKFCRILNPELAIQHIL---------PCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPI  362 (626)
Q Consensus       295 ~vr~~a~~~l~~l~~~~~~~~~~~~l~---------~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~  362 (626)
                      .+-..++.++..+....+.+.-....-         ..+-.+.+++.+.+|.+..+.+..+......-   .....+-|.
T Consensus       201 Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~  280 (1312)
T KOG0803|consen  201 RVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKPV  280 (1312)
T ss_pred             HHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhHH
Confidence            344556666666665555432111111         22335567888999999888877776544322   223456666


Q ss_pred             HHHhhcCCCHHHHHHHHHhhHHHHhhhchhh------HHhhHHHHHHHHhc
Q 006898          363 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDL------LSQSLLPAIVELAE  407 (626)
Q Consensus       363 l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~------~~~~i~~~l~~~~~  407 (626)
                      +.....+.+ -|.....+++..+...+..++      ..+.++|.+.++.+
T Consensus       281 ~~~~~~~~d-~~c~~~we~Vl~~~~~~p~~~~~~~~~~~k~il~~l~~~ir  330 (1312)
T KOG0803|consen  281 LLGSIDSLD-HVCSSMWEKVLLNLSSLPDEWLHLNSLLKKGILPLLSNLIR  330 (1312)
T ss_pred             HHccccccc-cccHHHHHHHHHHhhhhhHHHhcccchhccchhHHHHHHHh
Confidence            666666655 333333333332223333322      22457777777665

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]

Probab=90.10  E-value=27  Score=36.66  Aligned_cols=220  Identities=14%  Similarity=0.129  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchh--HHHHHHHHHHHhhcccCchh
Q 006898          160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDS--VRLLAVEGCAALGKLLEPQD  237 (626)
Q Consensus       160 ~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~--vr~~a~~~l~~l~~~~~~~~  237 (626)
                      ..+..+.++...+++++..+|.+++-.|+-.-..-..+    +++..+..++.|.+.+  |...|.-+|+.+.-..-.+.
T Consensus       449 e~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~e----~V~~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~d  524 (878)
T KOG2005|consen  449 ECDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQRE----EVLELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNED  524 (878)
T ss_pred             ccCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCchH----HHHHHHhHHhcCCCCchhHHHHHHhhcceeEEecCChH
Confidence            44566777777888888999998888887654432222    3333555567776554  55555545554432222233


Q ss_pred             hhhhhHHHHHHhc--CCCCHHHHHHHH-----------------H--------------HHHHHHHHhCCCc--cccchH
Q 006898          238 CVAHILPVIVNFS--QDKSWRVRYMVA-----------------N--------------QLYELCEAVGPEP--TRMDLV  282 (626)
Q Consensus       238 ~~~~i~~~l~~~~--~d~~~~vR~~a~-----------------~--------------~l~~l~~~~~~~~--~~~~l~  282 (626)
                      ....++..+....  +-.+...|-.+.                 +              .+-..+.+.|.-.  ..+.  
T Consensus       525 vts~ilqtlmekse~El~d~~~RFL~LGL~llflgkqe~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~--  602 (878)
T KOG2005|consen  525 VTSSILQTLMEKSETELEDQWFRFLALGLALLFLGKQESVDAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKIQS--  602 (878)
T ss_pred             HHHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHhcccchHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEech--
Confidence            3333333332211  112222332211                 1              1111111112110  0001  


Q ss_pred             HHHHHhcCCChH--HH-HHHHHHh--HHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHH
Q 006898          283 PAYVRLLRDNEA--EV-RIAAAGK--VTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIE  357 (626)
Q Consensus       283 ~~l~~~l~d~~~--~v-r~~a~~~--l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~  357 (626)
                      ..+...+.+.+.  +. ..-|+-.  +-.+++.+|.+.    .+..+.+++.-.++.+|+++--+++-++..-++    -
T Consensus       603 q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~eM----~lR~f~h~l~yge~~iRravPLal~llsvSNPq----~  674 (878)
T KOG2005|consen  603 QLLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSEM----VLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQ----V  674 (878)
T ss_pred             hhhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhHH----HHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCc----c
Confidence            122233333221  11 1112221  223334444443    355566666677888999887777777643222    1


Q ss_pred             hHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhh
Q 006898          358 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL  393 (626)
Q Consensus       358 ~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~  393 (626)
                      .++..+.+...|.+.+|-.+++-+++-+........
T Consensus       675 ~vlDtLsk~shd~D~eva~naIfamGLiGAGTnNAR  710 (878)
T KOG2005|consen  675 NVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNNAR  710 (878)
T ss_pred             hHHHHHHHhccCcchHHHHHHHHHhccccCCcchHH
Confidence            356677788889999999999888887765544433

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]

Probab=90.09  E-value=25  Score=36.97  Aligned_cols=281  Identities=13%  Similarity=0.073  Sum_probs=135.8

Q ss_pred             HHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHH
Q 006898          204 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVP  283 (626)
Q Consensus       204 l~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~  283 (626)
                      +..+-+.+..+++.++..|+-.++-.......  -.+-.+..+...+.+++..+|..++-.+|....  |..  .+++..
T Consensus       417 L~qldkylys~~~~ikaGaLLgigi~~~gv~n--e~dpalALLsdyv~~~~s~~ri~aIlGLglaya--Gsq--~e~V~~  490 (878)
T KOG2005|consen  417 LEQLDKYLYSDESYIKAGALLGIGISNSGVFN--ECDPALALLSDYLQSSSSIHRIGAILGLGLAYA--GSQ--REEVLE  490 (878)
T ss_pred             HHHHHHHhhcCCchhhhccceeeeeecccccc--ccCHHHHHHHHhccCCCceeehHHhhhhHHhhc--CCc--hHHHHH
Confidence            34455555556667777666555543333322  245567777888888888899888877774432  221  234444


Q ss_pred             HHHHhcCCChHH--HHHHHHHhHHHHHH-hhChHHHHHhhHHHHHHhcc--CCCHHHHHHHHHHHHhhhhhhcHHHHHHh
Q 006898          284 AYVRLLRDNEAE--VRIAAAGKVTKFCR-ILNPELAIQHILPCVKELSS--DSSQHVRSALASVIMGMAPLLGKDATIEQ  358 (626)
Q Consensus       284 ~l~~~l~d~~~~--vr~~a~~~l~~l~~-~~~~~~~~~~l~~~l~~l~~--d~~~~vr~~~~~~l~~l~~~~~~~~~~~~  358 (626)
                      .+...+.|.+..  |.--|.-+|+.+.- .+ .+.+...++..+.+-.+  -.+...|--+. .++.+  .+|+....+.
T Consensus       491 lL~Pi~~d~~~~~ev~~~aslsLG~IfvGsc-n~dvts~ilqtlmekse~El~d~~~RFL~L-GL~ll--flgkqe~~d~  566 (878)
T KOG2005|consen  491 LLSPIMFDTKSPMEVVAFASLSLGMIFVGSC-NEDVTSSILQTLMEKSETELEDQWFRFLAL-GLALL--FLGKQESVDA  566 (878)
T ss_pred             HHhHHhcCCCCchhHHHHHHhhcceeEEecC-ChHHHHHHHHHHHHhhhhhhhchHHHHHHH-HHHHH--HhcccchHHH
Confidence            566667766644  44333333433211 11 22334455554443221  12223332221 11111  1232221221


Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHH-HHHHHHhcCCChH-HHHHHHHHHHHHHHhhChhhHHHH
Q 006898          359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL-PAIVELAEDRHWR-VRLAIIEYIPLLASQLGVGFFDDK  436 (626)
Q Consensus       359 l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~-~~l~~~~~~~~~~-~r~~~~~~l~~l~~~~~~~~~~~~  436 (626)
                      ....    ++.-...+|..+- .+-..+...|.-... .+- ..+..+..+.... -...-...++.-.-+.|.+.-.+-
T Consensus       567 ~~e~----~~~i~~~~~~~~~-~lv~~caYaGTGnvl-~Iq~q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~eM  640 (878)
T KOG2005|consen  567 VVET----IKAIEGPIRKHES-ILVKSCAYAGTGNVL-KIQSQLLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSEM  640 (878)
T ss_pred             HHHH----HHHhhhHHHHHHH-HHHHHhhccccCceE-EechhhhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhHH
Confidence            1111    1111122222222 222222222221100 010 1122222221110 000001111111112344444444


Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhcc
Q 006898          437 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAP  504 (626)
Q Consensus       437 l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~  504 (626)
                      .+-.+-+++.-.++.+|++.=-+++-++..-.    +-.++..+.+..+|.+..+-.+++.++|-+..
T Consensus       641 ~lR~f~h~l~yge~~iRravPLal~llsvSNP----q~~vlDtLsk~shd~D~eva~naIfamGLiGA  704 (878)
T KOG2005|consen  641 VLRHFGHLLHYGEPHIRRAVPLALGLLSVSNP----QVNVLDTLSKFSHDGDLEVAMNAIFAMGLIGA  704 (878)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhhhccCCC----cchHHHHHHHhccCcchHHHHHHHHHhccccC
Confidence            55667777888899999988888887764322    35689999999999999999999999998764

>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]

Probab=89.81  E-value=16  Score=37.84  Aligned_cols=131  Identities=10%  Similarity=-0.092  Sum_probs=79.9

Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChH----Hhh
Q 006898          437 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE----ITC  512 (626)
Q Consensus       437 l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~----~~~  512 (626)
                      ....+.+...|-.+.+|..+...++..+..++..+.....+...-.++.|.+..+|......+..++.+.+..    .+.
T Consensus       276 cdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~  355 (740)
T COG5537         276 CDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFV  355 (740)
T ss_pred             HHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            3445566677777888888888888877776655444444555555677888888888888777776654422    234


Q ss_pred             hcHHHHHhhhC-CCCCchHHHHHHHHHHHHHhhhccchhhhcccchHHhhhccCCCccccc
Q 006898          513 SRLLPVVINAS-KDRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSFMLYLNVNNFNVGF  572 (626)
Q Consensus       513 ~~~l~~l~~~l-~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~l~~d~d~~vr~  572 (626)
                      ++....++..+ .|.+. ||..+.+.+..+....--   ...-+-.+. .+.-|-.++-|.
T Consensus       356 eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~lg~L---~~SeIlIvs-scmlDi~pd~r~  411 (740)
T COG5537         356 ERFKDRILEFLRTDSDC-VRICSIKSLCYLRILGVL---SSSEILIVS-SCMLDIIPDSRE  411 (740)
T ss_pred             HHHHHHHHHHHhhccch-hhHHHHHHHHHHHHhccc---chhHHHHHH-HHHhcCCCcchH
Confidence            44444444444 35555 999999998887654211   122222333 445565666555

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=89.65  E-value=32  Score=36.87  Aligned_cols=110  Identities=14%  Similarity=0.115  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHHhCh-------HH-HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccc
Q 006898          435 DKLGALCMQWL-QDKVYSIRDAAANNLKRLAEEFGP-------EW-AMQHITPQVLEMINNPHYLYRMTILRAISLLAPV  505 (626)
Q Consensus       435 ~~l~p~l~~~l-~d~~~~VR~~a~~~l~~l~~~~~~-------~~-~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~  505 (626)
                      +.++...+.++ ...+..+-++++.+|..+....+.       .. .++..+|.+.+++..++..+...++.++.++...
T Consensus       517 p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d  596 (717)
T KOG1048|consen  517 PSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD  596 (717)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC
Confidence            44555544444 445777888999998888754322       11 3577899999999999999999999999999876


Q ss_pred             cChHH-hhhcHHHHHhhhCCCCCc------hHHHHHHHHHHHHHhh
Q 006898          506 MGSEI-TCSRLLPVVINASKDRVP------NIKFNVAKVLQSLIPI  544 (626)
Q Consensus       506 ~~~~~-~~~~~l~~l~~~l~d~~~------~vR~~a~~~l~~i~~~  544 (626)
                      ..... .-.+.+|-|...+-+..+      +.-..+|.+|.++...
T Consensus       597 ~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~  642 (717)
T KOG1048|consen  597 IRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRK  642 (717)
T ss_pred             chhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHH
Confidence            65443 456788889988866555      5677888888888743

>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes

Probab=89.63  E-value=16  Score=33.19  Aligned_cols=134  Identities=16%  Similarity=0.180  Sum_probs=77.0

Q ss_pred             hhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCC-CCHHHHHHH-HHHHHHHHHHhCCCccc
Q 006898          201 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMV-ANQLYELCEAVGPEPTR  278 (626)
Q Consensus       201 ~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d-~~~~vR~~a-~~~l~~l~~~~~~~~~~  278 (626)
                      +.....+..+..++..+.|..|+..+........     ...++.+...+.+ .+|.+--.. ...++.+....      
T Consensus        50 ~~~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~-----~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------  118 (213)
T PF08713_consen   50 EELYELADELWESGYREERYLALLILDKRRKKLT-----EEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------  118 (213)
T ss_dssp             HHHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG-------HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------
T ss_pred             hHHHHHHHHHcCCchHHHHHHHHHHhHHHhhhhh-----HHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------
Confidence            4445566667777777777777777765442222     1234455554433 456555444 34445443321      


Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhh
Q 006898          279 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL  349 (626)
Q Consensus       279 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~  349 (626)
                      +...+.+....+++++-+|..++..+......    ...+.++..+...+.|++..||.++..+|..++..
T Consensus       119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~  185 (213)
T PF08713_consen  119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK  185 (213)
T ss_dssp             GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Confidence            45666677777777777777766655444332    12245566666667777777777777777777654

The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.

>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins []

Probab=89.54  E-value=5.7  Score=35.42  Aligned_cols=60  Identities=13%  Similarity=0.208  Sum_probs=40.0

Q ss_pred             HHHHHhhHHHHhhhchh--hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHH
Q 006898          376 LNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDD  435 (626)
Q Consensus       376 ~~a~~~L~~~~~~~~~~--~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~  435 (626)
                      ..++..++.+.+.+|..  .....++..+.++-++++...|..+-.+++...+.+|++.+.+
T Consensus        18 ~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~   79 (198)
T PF08161_consen   18 PEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLS   79 (198)
T ss_pred             HHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHH
Confidence            33444444444444432  1224455666666677788899999999999999999987653

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=89.42  E-value=2.2  Score=34.05  Aligned_cols=67  Identities=15%  Similarity=0.150  Sum_probs=37.1

Q ss_pred             HHHHHHHHh-cCCchHHHHHHHHHHHHHHHHhChHH--H-hhhhHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 006898          437 LGALCMQWL-QDKVYSIRDAAANNLKRLAEEFGPEW--A-MQHITPQVLEMINNPHYLYRMTILRAISLLA  503 (626)
Q Consensus       437 l~p~l~~~l-~d~~~~VR~~a~~~l~~l~~~~~~~~--~-~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~  503 (626)
                      ++..+..++ .+.++.+-.-|+.=+|.++..++...  . .-..-..++++++++|+.||..|+.|++.+.
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            444455555 22345555567777777777653321  1 1234455666677777777777777776553

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG4524 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.22  E-value=39  Score=37.26  Aligned_cols=92  Identities=15%  Similarity=0.132  Sum_probs=71.3

Q ss_pred             hhhHHHHHhhhcCCChHHHHHHHHHHHHhccccCh--H---HhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhcc-
Q 006898          474 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS--E---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ-  547 (626)
Q Consensus       474 ~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~--~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~-  547 (626)
                      ..|+..-..++.+++-.+|..++.++......+..  +   ......+|.+...+.++++-+-..|++++..+....|. 
T Consensus       802 ~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDF  881 (1014)
T KOG4524|consen  802 LKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDF  881 (1014)
T ss_pred             HHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhH
Confidence            45556666678999999999999998876544332  1   23467788899999999999999999999999988776 


Q ss_pred             --chhhhcccchHHhhhccCC
Q 006898          548 --SVSTFSVSPFSFMLYLNVN  566 (626)
Q Consensus       548 --~~~~~~i~~~l~~~l~~d~  566 (626)
                        +.+...++|.+. .+..|.
T Consensus       882 v~sR~l~dvlP~l~-~~~~~~  901 (1014)
T KOG4524|consen  882 VASRFLEDVLPWLK-HLCQDS  901 (1014)
T ss_pred             HHHHHHHHHHHHHH-HHHHHH
Confidence              466678888888 666553

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=88.59  E-value=28  Score=34.82  Aligned_cols=186  Identities=9%  Similarity=0.034  Sum_probs=96.1

Q ss_pred             HHHHHHHHHhHHHHHHhhChHHH--HHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCC
Q 006898          294 AEVRIAAAGKVTKFCRILNPELA--IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEF  371 (626)
Q Consensus       294 ~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~  371 (626)
                      ..+-.+.+..+..+....+....  ...-+|.+...+-+....+|..+......+...++.+......+....+.-.++.
T Consensus       148 ~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~  227 (372)
T PF12231_consen  148 KSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG  227 (372)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc
Confidence            34555566666666665443311  1223455544444567788888777766666666654333222222221111111


Q ss_pred             HHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcC-CChHHHHHHHHHHHHHHHhhCh-----hhHHHHHHHHHHHHh
Q 006898          372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGV-----GFFDDKLGALCMQWL  445 (626)
Q Consensus       372 ~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~~-----~~~~~~l~p~l~~~l  445 (626)
                       .+.                    +.+.+.+.+++.+ ++.   ..+.+.+..+...+|.     -.+.+..+.+...++
T Consensus       228 -~~~--------------------~~~~~~L~~mi~~~~~~---~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cF  283 (372)
T PF12231_consen  228 -KLI--------------------QLYCERLKEMIKSKDEY---KLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCF  283 (372)
T ss_pred             -cHH--------------------HHHHHHHHHHHhCcCCc---chHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHh
Confidence             222                    3344444444444 211   1122223333322332     223456777888899


Q ss_pred             cCCchHHHHHHHHHHHHHHHHhChHHH-hhhhHH----HHHhhhcC-CCh----HHHHHHHHHHHHhc
Q 006898          446 QDKVYSIRDAAANNLKRLAEEFGPEWA-MQHITP----QVLEMINN-PHY----LYRMTILRAISLLA  503 (626)
Q Consensus       446 ~d~~~~VR~~a~~~l~~l~~~~~~~~~-~~~il~----~l~~~l~~-~~~----~vR~~a~~~l~~i~  503 (626)
                      +++++.+|..|..++..++.....+.. ....+.    .+...++. ...    .+|..++..++++.
T Consensus       284 n~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll  351 (372)
T PF12231_consen  284 NSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL  351 (372)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence            999999999999999999986544321 122222    22222222 122    67788777777654

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]

Probab=88.46  E-value=35  Score=35.68  Aligned_cols=150  Identities=8%  Similarity=0.084  Sum_probs=89.8

Q ss_pred             HHHHHHHHhcCC--ChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHh--------cCCchHHHHHHHHHHHHHHHHh
Q 006898          398 LLPAIVELAEDR--HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL--------QDKVYSIRDAAANNLKRLAEEF  467 (626)
Q Consensus       398 i~~~l~~~~~~~--~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l--------~d~~~~VR~~a~~~l~~l~~~~  467 (626)
                      .+..+...+.++  +|..-...+-++++++.+++...-...++..+-.++        .|+..-|-..-.-.+|+.-..+
T Consensus       482 mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQYpRFL  561 (1053)
T COG5101         482 MIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQYPRFL  561 (1053)
T ss_pred             HHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeeccchHHH
Confidence            444555555444  566666777788888777665433333333333322        3333333333333334333333


Q ss_pred             ChHH-HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChH----------HhhhcHHHHHhhhCCCCCchHHHHHHH
Q 006898          468 GPEW-AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE----------ITCSRLLPVVINASKDRVPNIKFNVAK  536 (626)
Q Consensus       468 ~~~~-~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~----------~~~~~~l~~l~~~l~d~~~~vR~~a~~  536 (626)
                      ...| +...++..+.+.+.....+++-.||..+-.++++|...          .+...++..+.+...|-.+.-...--+
T Consensus       562 kahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~htfYe  641 (1053)
T COG5101         562 KAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQKHTFYE  641 (1053)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHHHhHHHH
Confidence            3232 34566777777777788899999999999999887654          344556666666667777777777777


Q ss_pred             HHHHHHhhhcc
Q 006898          537 VLQSLIPIVDQ  547 (626)
Q Consensus       537 ~l~~i~~~~~~  547 (626)
                      +++-+++..+.
T Consensus       642 Acg~vIse~p~  652 (1053)
T COG5101         642 ACGMVISEVPK  652 (1053)
T ss_pred             HHhHHHhccch
Confidence            77777766543

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=88.44  E-value=22  Score=33.37  Aligned_cols=141  Identities=16%  Similarity=0.162  Sum_probs=83.5

Q ss_pred             HHHHHHHHhcCCc-----hHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHH-HHHHhccccChHH
Q 006898          437 LGALCMQWLQDKV-----YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILR-AISLLAPVMGSEI  510 (626)
Q Consensus       437 l~p~l~~~l~d~~-----~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~-~l~~i~~~~~~~~  510 (626)
                      .+|.++..+++++     ..++ .++..|+.+++..+...     +..+...+....++.+...+. ++..+.+.+.++ 
T Consensus       112 ~LP~ll~~~d~~~~i~~~~~~~-~~A~~La~~a~~~~~~~-----La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~-  184 (262)
T PF14225_consen  112 LLPRLLHAFDDPNPIQPDQECI-EIAEALAQVAEAQGLPN-----LARILSSYAKGRFRDKDDFLSQVVSYLREAFFPD-  184 (262)
T ss_pred             HHHHHHHHhcccccccccHHHH-HHHHHHHHHHHhCCCcc-----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCch-
Confidence            5667777777666     3344 56677888886654331     222333333332222222222 222333333322 


Q ss_pred             hhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc-hhhhcccchHHhhhccCCCcccccccccCchhHHHHHHHHH
Q 006898          511 TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-VSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNY  589 (626)
Q Consensus       511 ~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~-~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~  589 (626)
                      +...++..+..++.+..+.+|..+.+.|..+....+-. .....++..+. ++++.+               ++.+|++.
T Consensus       185 ~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispll-rlL~t~---------------~~~eAL~V  248 (262)
T PF14225_consen  185 HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLL-RLLQTD---------------LWMEALEV  248 (262)
T ss_pred             hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHH-HHhCCc---------------cHHHHHHH
Confidence            33567778899999999999999999999999887543 34445555555 565542               67788888


Q ss_pred             HHHHhhcCCcc
Q 006898          590 CHRWWRKQSVP  600 (626)
Q Consensus       590 ~~~~~~~~~~~  600 (626)
                      +..+...+..+
T Consensus       249 Ld~~v~~s~s~  259 (262)
T PF14225_consen  249 LDEIVTRSGSP  259 (262)
T ss_pred             HHHHHhhcccc
Confidence            87766555443

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion

Probab=88.13  E-value=0.57  Score=29.46  Aligned_cols=23  Identities=39%  Similarity=0.482  Sum_probs=11.8

Q ss_pred             chHHHHHHhcCCChHHHHHHHHH
Q 006898          280 DLVPAYVRLLRDNEAEVRIAAAG  302 (626)
Q Consensus       280 ~l~~~l~~~l~d~~~~vr~~a~~  302 (626)
                      .+...+...+.|+++.||.+|++
T Consensus        18 ~v~~~i~~rl~D~s~~VR~aav~   40 (42)
T PF12765_consen   18 DVQSAIIRRLSDSSPSVREAAVD   40 (42)
T ss_pred             HHHHHHHHHhcCCChHHHHHHHH
Confidence            34444455555555555555544

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)

Probab=87.96  E-value=28  Score=33.97  Aligned_cols=157  Identities=12%  Similarity=0.086  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHHHhhC-hhhHHHHHHHHHHH-Hh---cCCchHHHHH-HHHHHHHHHHHhChH------HHhhhhHHHH
Q 006898          413 VRLAIIEYIPLLASQLG-VGFFDDKLGALCMQ-WL---QDKVYSIRDA-AANNLKRLAEEFGPE------WAMQHITPQV  480 (626)
Q Consensus       413 ~r~~~~~~l~~l~~~~~-~~~~~~~l~p~l~~-~l---~d~~~~VR~~-a~~~l~~l~~~~~~~------~~~~~il~~l  480 (626)
                      +|...+..+........ .+...+.++|.++. .+   .+..+..|.. ...+++.++..++..      ...+.++...
T Consensus        43 iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~T  122 (319)
T PF08767_consen   43 IKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECT  122 (319)
T ss_dssp             HHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            44555555665555443 23333444444433 22   2345555554 446666677666552      1234455555


Q ss_pred             HhhhcC---CChHHHHHHHHHHHHhccccChH------HhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhcc----
Q 006898          481 LEMINN---PHYLYRMTILRAISLLAPVMGSE------ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ----  547 (626)
Q Consensus       481 ~~~l~~---~~~~vR~~a~~~l~~i~~~~~~~------~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~----  547 (626)
                      ..+.++   .-|..|......+..+.+.+-..      .....++..+....+++..+|-..+++++..+......    
T Consensus       123 l~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~  202 (319)
T PF08767_consen  123 LPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPE  202 (319)
T ss_dssp             HHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHH
T ss_pred             HHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            555544   35789999999999988865432      23456778888889999999999999999999888765    


Q ss_pred             ---chhhhcccchHHh--hhccCCCcc
Q 006898          548 ---SVSTFSVSPFSFM--LYLNVNNFN  569 (626)
Q Consensus       548 ---~~~~~~i~~~l~~--~l~~d~d~~  569 (626)
                         ..+....++.+.+  ..+.|++..
T Consensus       203 ~~~~F~~~y~~~il~~if~vltD~~Hk  229 (319)
T PF08767_consen  203 FANQFYQQYYLDILQDIFSVLTDSDHK  229 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSTT-G
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCcccH
Confidence               2334444444442  345666644

CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=87.86  E-value=3.8  Score=36.28  Aligned_cols=72  Identities=28%  Similarity=0.246  Sum_probs=54.9

Q ss_pred             hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh
Q 006898          396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP  469 (626)
Q Consensus       396 ~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~  469 (626)
                      +..++.+.++..+++..+|..+++.+..+.+. |-. -....+|.+..+..|+++.+|..|...+..+.+.++.
T Consensus         7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~q-GLv-nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s   78 (187)
T PF12830_consen    7 QRYLKNILELCLSSDDSVRLAALQVLELILRQ-GLV-NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHES   78 (187)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc-CCC-ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH
Confidence            55677778888888888888888888887663 110 0135788888999999999999999999888877643

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=87.79  E-value=15  Score=30.73  Aligned_cols=74  Identities=15%  Similarity=0.079  Sum_probs=46.8

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccc----hhhhHHHHHHHhhcC-CchhHHHHHHHHHHHhhcccCc
Q 006898          162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH----LKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEP  235 (626)
Q Consensus       162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~ll~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~  235 (626)
                      .+.+..+.+-+.+.++.+...++..|..+++++|...    ....++..+..++.+ ..+.|+..++..+...+..+..
T Consensus        40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~  118 (142)
T cd03569          40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRN  118 (142)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence            4455555566677778888888888888888776522    123355555555543 4557777777777776666554

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=87.66  E-value=5  Score=39.72  Aligned_cols=151  Identities=12%  Similarity=0.042  Sum_probs=96.0

Q ss_pred             HHHHHHHHhcCCch--HHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcC-CChHHHHHHHHHHHHhccccCh---HH
Q 006898          437 LGALCMQWLQDKVY--SIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN-PHYLYRMTILRAISLLAPVMGS---EI  510 (626)
Q Consensus       437 l~p~l~~~l~d~~~--~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~-~~~~vR~~a~~~l~~i~~~~~~---~~  510 (626)
                      -+..+++++..++.  .||..+.+.|.++...-+.+.....-+..++.+.+. .-.......+..++++.++...   ..
T Consensus       181 ~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~L  260 (832)
T KOG3678|consen  181 GLDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRL  260 (832)
T ss_pred             hHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            44556677766654  579999999988876655443333334455554433 2344555666777777765331   12


Q ss_pred             hhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc----hhhhcccchHHhhhccCCCcccccccccCchhHHHHHH
Q 006898          511 TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----VSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLA  586 (626)
Q Consensus       511 ~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~----~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~a  586 (626)
                      +....+..++-+..-.+|.+-..++-+|+++.-+.+..    -....+-..|. .+....|.-.|.         +|+.|
T Consensus       261 vaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF-~LA~skDel~R~---------~AClA  330 (832)
T KOG3678|consen  261 VAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLF-PLAFSKDELLRL---------HACLA  330 (832)
T ss_pred             HhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhh-hhhcchHHHHHH---------HHHHH
Confidence            23345556666777778888889999999988776553    22334555555 666666778888         99999


Q ss_pred             HHHHHHHhhcC
Q 006898          587 LNYCHRWWRKQ  597 (626)
Q Consensus       587 l~~~~~~~~~~  597 (626)
                      +.++....+-.
T Consensus       331 V~vlat~KE~E  341 (832)
T KOG3678|consen  331 VAVLATNKEVE  341 (832)
T ss_pred             Hhhhhhhhhhh
Confidence            88876554433

>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6)

Probab=87.60  E-value=2.3  Score=32.41  Aligned_cols=57  Identities=25%  Similarity=0.232  Sum_probs=45.3

Q ss_pred             CCCHHHHHHHHHhHHHHHHhhCc--cchhhhHHHHHHHhhcCCc--hhHHHHHHHHHHHhh
Q 006898          174 DDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQ--DSVRLLAVEGCAALG  230 (626)
Q Consensus       174 d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~l~~d~~--~~vr~~a~~~l~~l~  230 (626)
                      +++|.+|..|++.++.++..++.  +...+.+...+.+.+.|+.  ...+-.|+..|..++
T Consensus        17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG   77 (92)
T PF07571_consen   17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG   77 (92)
T ss_pred             cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence            56799999999999999998876  4566778888888888764  356778888887764

; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=87.31  E-value=15  Score=30.33  Aligned_cols=75  Identities=9%  Similarity=0.061  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccch----hhhHHHHHHHhhcCCch--hHHHHHHHHHHHhhcccC
Q 006898          161 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHL----KTDIMSIFEDLTQDDQD--SVRLLAVEGCAALGKLLE  234 (626)
Q Consensus       161 ~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~ll~~l~~l~~d~~~--~vr~~a~~~l~~l~~~~~  234 (626)
                      ..+.+..+.+-+.+.++.+...++..+..++.+.|....    ...++..+..++.+...  .|+..++..+...+..+.
T Consensus        35 ~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~  114 (133)
T smart00288       35 PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFK  114 (133)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence            344555666667778888888888888888888776321    23355566666655432  377777777777766654


Q ss_pred             c
Q 006898          235 P  235 (626)
Q Consensus       235 ~  235 (626)
                      .
T Consensus       115 ~  115 (133)
T smart00288      115 N  115 (133)
T ss_pred             C
Confidence            3

Unpublished observations. Domain of unknown function.

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion

Probab=87.27  E-value=0.99  Score=28.40  Aligned_cols=24  Identities=21%  Similarity=0.308  Sum_probs=15.5

Q ss_pred             hHHHHHHHhhcCCCHHHHHHHHHh
Q 006898          358 QLLPIFLSLLKDEFPDVRLNIISK  381 (626)
Q Consensus       358 ~l~~~l~~~l~d~~~~vr~~a~~~  381 (626)
                      .+...+...+.|+++.||.+|+..
T Consensus        18 ~v~~~i~~rl~D~s~~VR~aav~l   41 (42)
T PF12765_consen   18 DVQSAIIRRLSDSSPSVREAAVDL   41 (42)
T ss_pred             HHHHHHHHHhcCCChHHHHHHHHH
Confidence            455566666777777777766653

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=87.21  E-value=6.8  Score=32.39  Aligned_cols=77  Identities=13%  Similarity=0.174  Sum_probs=59.4

Q ss_pred             hhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHh----hhcHHHHHhhhCCCCCc--hHHHHHHHHHHHHHhhhcc
Q 006898          474 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKDRVP--NIKFNVAKVLQSLIPIVDQ  547 (626)
Q Consensus       474 ~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~----~~~~l~~l~~~l~d~~~--~vR~~a~~~l~~i~~~~~~  547 (626)
                      ...+..+.+-++++++.+...|+..+..+++.||..+.    ...++..|..+++++..  .||..++..+..+...+++
T Consensus        36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~  115 (133)
T smart00288       36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKN  115 (133)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence            44566677778889999999999999999999987643    34567777777766554  3999999999999888765


Q ss_pred             chh
Q 006898          548 SVS  550 (626)
Q Consensus       548 ~~~  550 (626)
                      ++-
T Consensus       116 ~~~  118 (133)
T smart00288      116 DPD  118 (133)
T ss_pred             CCC
Confidence            433

Unpublished observations. Domain of unknown function.

>KOG1932 consensus TATA binding protein associated factor [Transcription]

Probab=87.15  E-value=37  Score=38.13  Aligned_cols=90  Identities=22%  Similarity=0.284  Sum_probs=48.0

Q ss_pred             CHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhh-cCCCHHHHHHHHHhhHHHHh----h-hchhhHHhhH---HHHH
Q 006898          332 SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQ----V-IGIDLLSQSL---LPAI  402 (626)
Q Consensus       332 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~L~~~~~----~-~~~~~~~~~i---~~~l  402 (626)
                      ...+|.++...+..++...+.....    +.++.++ .|+++.+|.....-+..-..    . .+.+.....+   .+.+
T Consensus       881 ~vd~r~~a~~~~v~~~~~~~~~~~l----~~~leil~~~~dp~~R~~i~~ml~~~~np~~~~~~~s~~~~~~~~~~~~~~  956 (1180)
T KOG1932|consen  881 FVDVRICAEELNVDLGGVDGSPDDL----AYILEILENDPDPVIRHKILDMLSQSNNPVTKGGTESDLLKEALVERLWKL  956 (1180)
T ss_pred             hhhhHHHhhhhhhhhcccCCChHHH----HHHhhhcccCcchHHHHHHHHHhhccCCceeeccccCccccHHHHHhhhhh
Confidence            3477888888777776554433323    3333333 58888899888777665211    1 1111111222   2333


Q ss_pred             HHHhcCCChHHHHHHHHHHHHHH
Q 006898          403 VELAEDRHWRVRLAIIEYIPLLA  425 (626)
Q Consensus       403 ~~~~~~~~~~~r~~~~~~l~~l~  425 (626)
                      .+.-..++|..|..+....-.+-
T Consensus       957 ~~~~k~~D~~~r~~v~d~~~~L~  979 (1180)
T KOG1932|consen  957 KNLSKEPDICSRSSVLDVYIALF  979 (1180)
T ss_pred             hccCCCCCeEeEeehhhhhhhee
Confidence            33335567777777655554443

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=86.69  E-value=7.5  Score=32.51  Aligned_cols=83  Identities=10%  Similarity=0.127  Sum_probs=60.3

Q ss_pred             hhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHh----hhcHHHHHhhhCCCCCc-h---HHHHHHHHHHHHHhh
Q 006898          473 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKDRVP-N---IKFNVAKVLQSLIPI  544 (626)
Q Consensus       473 ~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~----~~~~l~~l~~~l~d~~~-~---vR~~a~~~l~~i~~~  544 (626)
                      ....+..|.+-+.++++.+...|+..+..+++.+|..+.    ...++..+.+++.++.. .   ||..+...+..+...
T Consensus        40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~  119 (140)
T PF00790_consen   40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA  119 (140)
T ss_dssp             HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence            355667777788889999999999999999999887643    23466677776544332 2   899999999999888


Q ss_pred             hccchhhhccc
Q 006898          545 VDQSVSTFSVS  555 (626)
Q Consensus       545 ~~~~~~~~~i~  555 (626)
                      ++..+....+.
T Consensus       120 f~~~~~~~~i~  130 (140)
T PF00790_consen  120 FKSDPELSLIQ  130 (140)
T ss_dssp             TTTSTTGHHHH
T ss_pred             HCCCCCchHHH
Confidence            85543333333

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=86.63  E-value=17  Score=30.20  Aligned_cols=95  Identities=12%  Similarity=0.100  Sum_probs=59.9

Q ss_pred             cCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHH----hhhhHHHHHh
Q 006898          407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQVLE  482 (626)
Q Consensus       407 ~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~----~~~il~~l~~  482 (626)
                      .+++|..-...+..+..  +.-|+    ...+..+.+-++++++.|...|...|..+++..|..+.    ...++..+.+
T Consensus        15 ~~~dw~~ileicD~In~--~~~~~----k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~k   88 (139)
T cd03567          15 REEDWEAIQAFCEQINK--EPEGP----QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIK   88 (139)
T ss_pred             CCCCHHHHHHHHHHHHc--CCccH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHH
Confidence            35667655555554432  11122    23444566677888888888888888888888877542    3566667777


Q ss_pred             hhcC------CChHHHHHHHHHHHHhccccC
Q 006898          483 MINN------PHYLYRMTILRAISLLAPVMG  507 (626)
Q Consensus       483 ~l~~------~~~~vR~~a~~~l~~i~~~~~  507 (626)
                      ++..      .+..||..++..+......+.
T Consensus        89 l~~~k~~~~~~~~~Vk~kil~li~~W~~~f~  119 (139)
T cd03567          89 LVSPKYLGSRTSEKVKTKIIELLYSWTLELP  119 (139)
T ss_pred             HhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            6642      356777777777776665443

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF14868 DUF4487: Domain of unknown function (DUF4487)

Probab=85.97  E-value=50  Score=34.84  Aligned_cols=62  Identities=21%  Similarity=0.306  Sum_probs=42.9

Q ss_pred             cCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhh----hcCCChHHHHHHHHHHHHhccccC
Q 006898          446 QDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM----INNPHYLYRMTILRAISLLAPVMG  507 (626)
Q Consensus       446 ~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~----l~~~~~~vR~~a~~~l~~i~~~~~  507 (626)
                      ..+...+|-+.+..++.+.+..-++...+.+.|.+..+    +.|++|-+++.|+++++.+++..+
T Consensus       490 ~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T~  555 (559)
T PF14868_consen  490 SEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAERTS  555 (559)
T ss_pred             hCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccCC
Confidence            44444477777777777776665554556667766653    578888888888888888876543

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.56  E-value=58  Score=35.22  Aligned_cols=74  Identities=18%  Similarity=0.024  Sum_probs=57.1

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccch-----hhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc
Q 006898          162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHL-----KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP  235 (626)
Q Consensus       162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~-----~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~  235 (626)
                      ++.+..++..++..+..||..+++.+..+....|.+..     .+.-+..++.++.|.-..+|..++-.|..+.+..+.
T Consensus       121 qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~  199 (970)
T KOG0946|consen  121 QDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSS  199 (970)
T ss_pred             chhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCch
Confidence            44566777778888999999999999999988776321     223355677888999889999999988888766554

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=85.19  E-value=30  Score=32.01  Aligned_cols=69  Identities=12%  Similarity=0.135  Sum_probs=44.5

Q ss_pred             HhHHHHHHHHhcCC-ccchhHHHhhHhHHhcCCCChHHH-----HHHHHHHHHhcCCCCHHHHHHHHHhHHHHHH
Q 006898          124 DWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDILK-----TELRSIYTQLCQDDMPMVRRSAASNLGKFAA  192 (626)
Q Consensus       124 ~~l~~~l~~l~~~~-~~~~r~~a~~~l~~~~~~~~~~~~-----~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~  192 (626)
                      -++.|++....+.. .+..|..+.+.|+++...-+++..     .+++|.++..++..+..-|..|...+.++..
T Consensus        94 lyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~  168 (262)
T PF04078_consen   94 LYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILL  168 (262)
T ss_dssp             GGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHH
T ss_pred             hhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHc
Confidence            35777775544443 356788999999999886665533     5678888888877777777777777766654

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]

Probab=85.09  E-value=46  Score=34.62  Aligned_cols=106  Identities=15%  Similarity=0.138  Sum_probs=75.1

Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHH----HHH
Q 006898          281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD----ATI  356 (626)
Q Consensus       281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~----~~~  356 (626)
                      ....+.....|-++.+|..+..++......++.-.+.-..+.+.-..+.|.+..||....+.+..++..-+..    .+.
T Consensus       276 cdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~  355 (740)
T COG5537         276 CDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFV  355 (740)
T ss_pred             HHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            3455667778999999999999999988877665444445556666788999999999999998888655432    233


Q ss_pred             HhHHHHHHHhhc-CCCHHHHHHHHHhhHHHHh
Q 006898          357 EQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQ  387 (626)
Q Consensus       357 ~~l~~~l~~~l~-d~~~~vr~~a~~~L~~~~~  387 (626)
                      +.+...++.++. |.+- ||..+++.+..+..
T Consensus       356 eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~  386 (740)
T COG5537         356 ERFKDRILEFLRTDSDC-VRICSIKSLCYLRI  386 (740)
T ss_pred             HHHHHHHHHHHhhccch-hhHHHHHHHHHHHH
Confidence            344444444443 5555 99998888777643

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=84.78  E-value=44  Score=33.24  Aligned_cols=148  Identities=13%  Similarity=0.075  Sum_probs=89.8

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC--hhhHHHHHHHHHHHHh-----cCCchHHHHHHHHHHHHHHHHhCh
Q 006898          397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VGFFDDKLGALCMQWL-----QDKVYSIRDAAANNLKRLAEEFGP  469 (626)
Q Consensus       397 ~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~--~~~~~~~l~p~l~~~l-----~d~~~~VR~~a~~~l~~l~~~~~~  469 (626)
                      +++..+...+.+.+.....++.-+++.+++.-.  .....+.++.-++.++     .|.+-.++.+++.+|..+.--...
T Consensus       315 ~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~n  394 (604)
T KOG4500|consen  315 QFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSN  394 (604)
T ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCc
Confidence            366777777778888888888888888876422  2233344444444443     456666778888898888654332


Q ss_pred             H--HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccCh---H-HhhhcHHHHHhhhCCCCCch-HHHHHHHHHHHHH
Q 006898          470 E--WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---E-ITCSRLLPVVINASKDRVPN-IKFNVAKVLQSLI  542 (626)
Q Consensus       470 ~--~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~---~-~~~~~~l~~l~~~l~d~~~~-vR~~a~~~l~~i~  542 (626)
                      .  +....+...+...++-..+.+...-+..+..+......   + .-...+...|..+.+.++-. |--...+.+..++
T Consensus       395 ka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lI  474 (604)
T KOG4500|consen  395 KAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLI  474 (604)
T ss_pred             hhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHH
Confidence            2  22344555666666666666666666665555432110   0 01245666777777777765 6666666666666


Q ss_pred             hh
Q 006898          543 PI  544 (626)
Q Consensus       543 ~~  544 (626)
                      .+
T Consensus       475 kH  476 (604)
T KOG4500|consen  475 KH  476 (604)
T ss_pred             Hh
Confidence            55

>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=84.71  E-value=1.3e+02  Score=38.75  Aligned_cols=152  Identities=13%  Similarity=0.074  Sum_probs=94.3

Q ss_pred             hcchHHHhhhhcCcchHHHHHHHHHHHHHHhhc----Ch------hhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcC
Q 006898           85 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQM----RE------SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYP  154 (626)
Q Consensus        85 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~----~~------~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~  154 (626)
                      ..+++.+-..++.++..++.....++..+....    +.      -.+.+++++.+..++.++.|..|.+++..|..++.
T Consensus       983 ~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~ 1062 (3550)
T KOG0889|consen  983 STFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIE 1062 (3550)
T ss_pred             HHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehh
Confidence            445666666677888899999999988775543    21      12345677777888888888999999888888888


Q ss_pred             CCChH----HHHHHHHHHHHhcCCCCHHH--------HHHHHHhHHHHHHhhCcc----chhhhHHHHHHHhhcCCchhH
Q 006898          155 SAPDI----LKTELRSIYTQLCQDDMPMV--------RRSAASNLGKFAATVEPA----HLKTDIMSIFEDLTQDDQDSV  218 (626)
Q Consensus       155 ~~~~~----~~~~l~~~l~~l~~d~~~~v--------R~~a~~~l~~l~~~~~~~----~~~~~ll~~l~~l~~d~~~~v  218 (626)
                      ..+..    ...+++..+...+.|...++        +......+..+......+    .....+...+..-+.+++..|
T Consensus      1063 ~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~V 1142 (3550)
T KOG0889|consen 1063 SMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDV 1142 (3550)
T ss_pred             hchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHH
Confidence            87742    33444444444444432222        222222222222111111    122334455555667788899


Q ss_pred             HHHHHHHHHHhhcccCch
Q 006898          219 RLLAVEGCAALGKLLEPQ  236 (626)
Q Consensus       219 r~~a~~~l~~l~~~~~~~  236 (626)
                      |..+.+.|..+++..+.+
T Consensus      1143 R~~~~~~L~~i~~~s~~~ 1160 (3550)
T KOG0889|consen 1143 REFSQKLLRLISELSGKS 1160 (3550)
T ss_pred             HHHHHHHHHHHHHHcCCc
Confidence            999999999998887653

>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []

Probab=84.25  E-value=8.5  Score=33.08  Aligned_cols=61  Identities=18%  Similarity=0.148  Sum_probs=47.9

Q ss_pred             CCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc
Q 006898          174 DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP  235 (626)
Q Consensus       174 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~  235 (626)
                      |.--.+|++|.+++..+........-...+++.+...+.| +.++|..+...+..++...+.
T Consensus        38 DDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~   98 (169)
T PF08623_consen   38 DDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPE   98 (169)
T ss_dssp             EGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HH
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHH
Confidence            4457899999999999988776655567788888889999 888999999999988776654

; PDB: 4A0C_A 1U6G_C.

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []

Probab=84.02  E-value=18  Score=28.48  Aligned_cols=60  Identities=12%  Similarity=0.143  Sum_probs=32.6

Q ss_pred             hHHHHHHHHHhHHHHHHhhChH--HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHH
Q 006898          293 EAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA  354 (626)
Q Consensus       293 ~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~  354 (626)
                      ...-|..++.+++.+.+..+..  .+...++..+...++.  +.+|..+++++..+...++.+.
T Consensus        28 ~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~--~~l~~~al~~W~~fi~~L~~~~   89 (107)
T PF08064_consen   28 PIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEI--PELREEALSCWNCFIKTLDEED   89 (107)
T ss_pred             CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC--hhhHHHHHHHHHHHHHHCCHHH
Confidence            3456677777777777733322  1122333333333332  3677777777777776666543

; GO: 0004674 protein serine/threonine kinase activity

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=83.65  E-value=24  Score=29.19  Aligned_cols=74  Identities=14%  Similarity=0.079  Sum_probs=44.5

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccc---hhh-hHHHHHHHhhcC---CchhHHHHHHHHHHHhhcccC
Q 006898          162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH---LKT-DIMSIFEDLTQD---DQDSVRLLAVEGCAALGKLLE  234 (626)
Q Consensus       162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~-~ll~~l~~l~~d---~~~~vr~~a~~~l~~l~~~~~  234 (626)
                      .+....+.+-+.+.++.++..|+..+..++.+.|...   +.. +.+..+..++.+   .++.||..++..+......++
T Consensus        36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~  115 (133)
T cd03561          36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG  115 (133)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            4445555566667777888888888888777776521   111 233334455543   355677777777776666555


Q ss_pred             c
Q 006898          235 P  235 (626)
Q Consensus       235 ~  235 (626)
                      .
T Consensus       116 ~  116 (133)
T cd03561         116 G  116 (133)
T ss_pred             C
Confidence            4

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=83.46  E-value=1e+02  Score=36.28  Aligned_cols=95  Identities=12%  Similarity=0.121  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHHHHhCh---H---HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChH--H-hhhcHHHHHhh
Q 006898          451 SIRDAAANNLKRLAEEFGP---E---WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE--I-TCSRLLPVVIN  521 (626)
Q Consensus       451 ~VR~~a~~~l~~l~~~~~~---~---~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~--~-~~~~~l~~l~~  521 (626)
                      .+-+.|...|..+...+..   .   ......+..|++.++..+..+-.++|.+|.++.-.....  . +.....+.|..
T Consensus       500 aIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrn  579 (2195)
T KOG2122|consen  500 AIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRN  579 (2195)
T ss_pred             hhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHH
Confidence            3444455555554443321   1   123667888888899999999999999999987655432  2 34567788999


Q ss_pred             hCCCCCchHHHHHHHHHHHHHhhh
Q 006898          522 ASKDRVPNIKFNVAKVLQSLIPIV  545 (626)
Q Consensus       522 ~l~d~~~~vR~~a~~~l~~i~~~~  545 (626)
                      ++..+...+-..++.+|.++..+-
T Consensus       580 LIhSKhkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  580 LIHSKHKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             HHhhhhhhhhhhHHHHHHHHhcCC
Confidence            999999999999999999887653

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []

Probab=83.06  E-value=21  Score=28.14  Aligned_cols=59  Identities=15%  Similarity=0.110  Sum_probs=40.6

Q ss_pred             CChHHHHHHHHHHHHHHHhhChhh---HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChH
Q 006898          409 RHWRVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE  470 (626)
Q Consensus       409 ~~~~~r~~~~~~l~~l~~~~~~~~---~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~  470 (626)
                      .+...|..++..++.+.+ .+.+.   +.++++-.+...+..+  ++|..|+++|..++..++.+
T Consensus        27 ~~~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~   88 (107)
T PF08064_consen   27 KPIPEKKRALRSIEELIK-LGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEE   88 (107)
T ss_pred             CCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHH
Confidence            456677778888888777 33332   2344555555555544  89999999999999988775

; GO: 0004674 protein serine/threonine kinase activity

>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins

Probab=82.84  E-value=10  Score=28.52  Aligned_cols=68  Identities=13%  Similarity=0.114  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHh-cCCCCHHHHHHHHHhHHHHHHhhCcc--chhhhHHHHHHHhhcCCchhHHHHHHHHHH
Q 006898          160 LKTELRSIYTQL-CQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCA  227 (626)
Q Consensus       160 ~~~~l~~~l~~l-~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~  227 (626)
                      .+.+++..+..+ ....+..||...++++..+....+..  .-|..++..+.....|+++.+-..|.+++.
T Consensus        14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~   84 (86)
T PF09324_consen   14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ   84 (86)
T ss_pred             HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence            456666666665 45567899999999999999877652  346678888888888887777777776654

It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=82.24  E-value=56  Score=32.47  Aligned_cols=71  Identities=8%  Similarity=0.076  Sum_probs=50.0

Q ss_pred             hhhHHHHHhhhcCC-ChHHHHHHHHHHHHhccccChH-Hh--hhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhh
Q 006898          474 QHITPQVLEMINNP-HYLYRMTILRAISLLAPVMGSE-IT--CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI  544 (626)
Q Consensus       474 ~~il~~l~~~l~~~-~~~vR~~a~~~l~~i~~~~~~~-~~--~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~  544 (626)
                      -+++..|..++... ++.+-..|+.=+|..+++.+.. ..  .-..-..++.+++.++++||.+|+.++-.++..
T Consensus       365 yellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~  439 (442)
T KOG2759|consen  365 YELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH  439 (442)
T ss_pred             HHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence            34666677766554 4677788888888888776543 11  223445677889999999999999998877643

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=81.96  E-value=29  Score=29.03  Aligned_cols=75  Identities=12%  Similarity=0.043  Sum_probs=55.0

Q ss_pred             hhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCch----hhhhhhHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCCC
Q 006898          201 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ----DCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPE  275 (626)
Q Consensus       201 ~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~  275 (626)
                      .+.+..+.+-+.+.++.+...|+..|..+.+.+|..    .....++..+.+++. ..+..||..+...+...+..++.+
T Consensus        40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~  119 (142)
T cd03569          40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNK  119 (142)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence            456777777788889999999999999999988762    223345555555554 567788888888888877776644

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=81.59  E-value=29  Score=28.85  Aligned_cols=74  Identities=11%  Similarity=-0.022  Sum_probs=50.8

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccch----hhhHHHHHHHhhcC------CchhHHHHHHHHHHHhhc
Q 006898          162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHL----KTDIMSIFEDLTQD------DQDSVRLLAVEGCAALGK  231 (626)
Q Consensus       162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~ll~~l~~l~~d------~~~~vr~~a~~~l~~l~~  231 (626)
                      .+.+..+.+-+++.++.|...++..|..+++++|....    ...++..+.+++.+      .+..|+...+..+...+.
T Consensus        37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (139)
T cd03567          37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL  116 (139)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            34455566667888888988899999999988886321    22345555555542      456888888888887776


Q ss_pred             ccCc
Q 006898          232 LLEP  235 (626)
Q Consensus       232 ~~~~  235 (626)
                      .++.
T Consensus       117 ~f~~  120 (139)
T cd03567         117 ELPH  120 (139)
T ss_pred             Hhcc
Confidence            6654

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain

Probab=80.93  E-value=27  Score=27.92  Aligned_cols=37  Identities=16%  Similarity=0.226  Sum_probs=29.1

Q ss_pred             hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhh
Q 006898          396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF  432 (626)
Q Consensus       396 ~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~  432 (626)
                      ..++..+.+-+++++|++..-++..+..+.+..|..+
T Consensus        36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f   72 (115)
T cd00197          36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERF   72 (115)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHH
Confidence            4567777777788888888888888888888877654

The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra

>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised

Probab=80.82  E-value=48  Score=30.75  Aligned_cols=89  Identities=7%  Similarity=0.083  Sum_probs=53.9

Q ss_pred             hhHHHHHhhhcCCChHHHHHHHHHHHHhccccChH--------------------------------HhhhcHHHHHhhh
Q 006898          475 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE--------------------------------ITCSRLLPVVINA  522 (626)
Q Consensus       475 ~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~--------------------------------~~~~~~l~~l~~~  522 (626)
                      .+-..+...+.+.++.+|..++..+..++...+..                                .-...++..|+..
T Consensus        43 ~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~  122 (239)
T PF11935_consen   43 ELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDSPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDV  122 (239)
T ss_dssp             HHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHH
Confidence            34445555666667777777777777665322110                                0113466677776


Q ss_pred             CCCCC--chHHHHHHHHHHHHHhhhccchhhhcccchHHhhhccCC
Q 006898          523 SKDRV--PNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSFMLYLNVN  566 (626)
Q Consensus       523 l~d~~--~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~l~~d~  566 (626)
                      +.++.  +.+=..++.+|..++..-  +.+.+.|+++|. .+..+.
T Consensus       123 l~~~~i~~~~~~a~insL~~Iak~R--P~~~~~Il~~ll-~~~~~~  165 (239)
T PF11935_consen  123 LQSPHISSPLLTAIINSLSNIAKQR--PQFMSRILPALL-SFNPNL  165 (239)
T ss_dssp             HC-TT--HHHHHHHHHHHHHHHHHS--GGGHHHHHHHHH-HHHHS-
T ss_pred             HhhcccchHHHHHHHHHHHHHHHHh--hHHHHHHHHHHH-hcCccc
Confidence            66555  556667777777777652  356678999998 776554

This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	626
1b3u_A	588	Crystal Structure Of Constant Regulatory Domain Of		0.0
2ie3_A	589	Structure Of The Protein Phosphatase 2a Core Enzyme		0.0
2iae_A	589	Crystal Structure Of A Protein Phosphatase 2a (Pp2a		0.0
3fga_A	588	Structural Basis Of Pp2a And Sgo Interaction Length		0.0
3dw8_A	582	Structure Of A Protein Phosphatase 2a Holoenzyme Wi		0.0
2pkg_A	580	Structure Of A Complex Between The A Subunit Of Pro		0.0
2nyl_A	582	Crystal Structure Of Protein Phosphatase 2a (Pp2a)		0.0
3c5w_A	232	Complex Between Pp2a-Specific Methylesterase Pme-1		1e-54
1m5n_S	485	Crystal Structure Of Heat Repeats (1-11) Of Importi		5e-04
1ibr_D	462	Complex Of Ran With Importin Beta Length = 462		5e-04
2qna_A	762	Crystal Structure Of Human Importin-Beta (127-876)		9e-04
2p8q_A	876	Crystal Structure Of Human Importin Beta Bound To T		9e-04

>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human Pp2a, Pr65alpha Length = 588

Iteration: 1
 Score =  659 bits (1701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/547 (59%), Positives = 416/547 (76%), Gaps = 4/547 (0%)
Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 6   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 65
Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
           LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct: 66  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125
Query: 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct: 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 185
Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
           S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct: 186 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 245
Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct: 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 305
Query: 305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
            +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct: 306 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 365
Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 366 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 425
Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct: 426 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 485
Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct: 486 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 545
Query: 541 LIPIVDQ 547
           + PI+D 
Sbjct: 546 IGPILDN 552

>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound To Tumor- Inducing Toxins Length = 589

Iteration: 1
 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/547 (59%), Positives = 416/547 (76%), Gaps = 4/547 (0%)
Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 7   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66
Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
           LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct: 67  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126
Query: 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct: 127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186
Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
           S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct: 187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246
Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct: 247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306
Query: 305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
            +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct: 307 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366
Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426
Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct: 427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486
Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct: 487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 546
Query: 541 LIPIVDQ 547
           + PI+D 
Sbjct: 547 IGPILDN 553

>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a) Holoenzyme. Length = 589

Iteration: 1
 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/547 (59%), Positives = 416/547 (76%), Gaps = 4/547 (0%)
Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 7   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66
Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
           LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct: 67  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126
Query: 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct: 127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186
Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
           S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct: 187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246
Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct: 247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306
Query: 305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
            +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct: 307 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366
Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426
Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct: 427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486
Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct: 487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 546
Query: 541 LIPIVDQ 547
           + PI+D 
Sbjct: 547 IGPILDN 553

>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction Length = 588

Iteration: 1
 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/547 (59%), Positives = 416/547 (76%), Gaps = 4/547 (0%)
Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 6   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 65
Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
           LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct: 66  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125
Query: 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct: 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 185
Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
           S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct: 186 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 245
Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct: 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 305
Query: 305 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
            +FC  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct: 306 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 365
Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 366 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 425
Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct: 426 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 485
Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct: 486 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 545
Query: 541 LIPIVDQ 547
           + PI+D 
Sbjct: 546 IGPILDN 552

>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55 Subunit Length = 582

Iteration: 1
 Score =  656 bits (1693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/544 (60%), Positives = 414/544 (76%), Gaps = 4/544 (0%)
Query: 8   LYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAM 67
           LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVLLA+
Sbjct: 3   LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLAL 62
Query: 68  AEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYI 127
           AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL   ++
Sbjct: 63  AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV 122
Query: 128 PLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNL 187
           PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AAS L
Sbjct: 123 PLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKL 182
Query: 188 GKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIV 247
           G+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P + 
Sbjct: 183 GEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLR 242
Query: 248 NFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKF 307
             ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV +F
Sbjct: 243 QAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEF 302
Query: 308 CRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIF 363
           C  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+F
Sbjct: 303 CENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLF 362
Query: 364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 423
           L+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PL
Sbjct: 363 LAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPL 422
Query: 424 LASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM 483
           LA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+VL M
Sbjct: 423 LAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAM 482
Query: 484 INNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 543
             +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ + P
Sbjct: 483 SGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGP 542
Query: 544 IVDQ 547
           I+D 
Sbjct: 543 ILDN 546

>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein Phosphatase 2a And The Small T Antigen Of Sv40 Length = 580

Iteration: 1
 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/544 (60%), Positives = 414/544 (76%), Gaps = 4/544 (0%)
Query: 8   LYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAM 67
           LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVLLA+
Sbjct: 1   LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLAL 60
Query: 68  AEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYI 127
           AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL   ++
Sbjct: 61  AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV 120
Query: 128 PLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNL 187
           PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AAS L
Sbjct: 121 PLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKL 180
Query: 188 GKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIV 247
           G+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P + 
Sbjct: 181 GEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLR 240
Query: 248 NFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKF 307
             ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV +F
Sbjct: 241 QAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEF 300
Query: 308 CRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIF 363
           C  L+ +    + +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+F
Sbjct: 301 CENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLF 360
Query: 364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 423
           L+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PL
Sbjct: 361 LAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPL 420
Query: 424 LASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM 483
           LA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+VL M
Sbjct: 421 LAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAM 480
Query: 484 INNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 543
             +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ + P
Sbjct: 481 SGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGP 540
Query: 544 IVDQ 547
           I+D 
Sbjct: 541 ILDN 544

>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) Holoenzyme With The Catalytic Subunit Carboxyl Terminus Truncated Length = 582

Iteration: 1
 Score =  636 bits (1640), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/546 (58%), Positives = 403/546 (73%), Gaps = 4/546 (0%)
Query: 6   EPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLL 65
           + LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVLL
Sbjct: 1   DSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLL 60
Query: 66  AMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDW 125
           A+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL   
Sbjct: 61  ALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAH 120
Query: 126 YIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAAS 185
           ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD P VRR+AAS
Sbjct: 121 FVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPXVRRAAAS 180
Query: 186 NLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPV 245
            LG+FA  +E  ++K++I+  F +L  D+QDSVRLLAVE C  + +LL  +D  A + P 
Sbjct: 181 KLGEFAKVLELDNVKSEIIPXFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVXPT 240
Query: 246 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVT 305
           +   ++DKSWRVRY VA++  EL +AVGPE T+ DLVPA+  L +D EAEVR AA+ KV 
Sbjct: 241 LRQAAEDKSWRVRYXVADKFTELQKAVGPEITKTDLVPAFQNLXKDCEAEVRAAASHKVK 300
Query: 306 KFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLP 361
           +FC  L+ +    +    ILPC+KEL SD++QHV+SALASVI G++P+LGKD TIE LLP
Sbjct: 301 EFCENLSADCRENVIXSQILPCIKELVSDANQHVKSALASVIXGLSPILGKDNTIEHLLP 360
Query: 362 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI 421
           +FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY 
Sbjct: 361 LFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYX 420
Query: 422 PLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVL 481
           PLLA QLGV FFD+KL +LC  WL D VY+IR+AA +NLK+L E+FG EWA   I P+VL
Sbjct: 421 PLLAGQLGVEFFDEKLNSLCXAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVL 480
Query: 482 EMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSL 541
               +P+YL+R T L  I++L+ V G +IT    LP V+  + D V N++FNVAK LQ +
Sbjct: 481 AXSGDPNYLHRXTTLFCINVLSEVCGQDITTKHXLPTVLRXAGDPVANVRFNVAKSLQKI 540
Query: 542 IPIVDQ 547
            PI+D 
Sbjct: 541 GPILDN 546

>pdb|3C5W|A Chain A, Complex Between Pp2a-Specific Methylesterase Pme-1 And Pp2a Core Enzyme Length = 232

Iteration: 1
 Score =  211 bits (536), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 103/188 (54%), Positives = 136/188 (72%)
Query: 360 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 419
           + + +  L++E   +RLN I KL  +   +G++ LSQSLLPAIVELAED  WRVRLAIIE
Sbjct: 9   IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERLSQSLLPAIVELAEDAKWRVRLAIIE 68
Query: 420 YIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ 479
           Y+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+
Sbjct: 69  YMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPK 128
Query: 480 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQ 539
           VL M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ
Sbjct: 129 VLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQ 188
Query: 540 SLIPIVDQ 547
            + PI+D 
Sbjct: 189 KIGPILDN 196

>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B Bound To The Non-Classical Nls(67-94) Of Pthrp Length = 485

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 20/180 (11%)
Query: 158 DILKTELRSI--YTQLCQDDMPM-VRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ-- 212
           DI +  L+ I  ++ +C ++M + +  S A+  G+        + K  +  +   LTQ  
Sbjct: 271 DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330
Query: 213 -DDQDSVRLLAVEGCAALGKLLE------PQDCVAHILPVIVNFSQDKSWRVRYMVANQL 265
               ++        C A G  L         D V H+LP I    ++  W  RY  A  +
Sbjct: 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDW--RYRDAAVM 388
Query: 266 YELCEAVGPEPTRM-----DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 320
              C   GPEP+++       +P  + L++D    VR  AA  V + C +L PE AI  +
Sbjct: 389 AFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL-PEAAINDV 447

>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta Length = 462

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 20/180 (11%)
Query: 158 DILKTELRSI--YTQLCQDDMPM-VRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ-- 212
           DI +  L+ I  ++ +C ++M + +  S A+  G+        + K  +  +   LTQ  
Sbjct: 271 DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330
Query: 213 -DDQDSVRLLAVEGCAALGKLLE------PQDCVAHILPVIVNFSQDKSWRVRYMVANQL 265
               ++        C A G  L         D V H+LP I    ++  W  RY  A  +
Sbjct: 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDW--RYRDAAVM 388
Query: 266 YELCEAVGPEPTRM-----DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 320
              C   GPEP+++       +P  + L++D    VR  AA  V + C +L PE AI  +
Sbjct: 389 AFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL-PEAAINDV 447

>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In Complex With The Ibb-Domain Of Snurportin1 (1-65) Length = 762

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM-----DLVPAYVRLLRD 291
           D V H+LP I    ++  W  RY  A  +   C   GPEP+++       +P  + L++D
Sbjct: 237 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 294
Query: 292 NEAEVRIAAAGKVTKFCRILNPELAIQHI 320
               VR  AA  V + C +L PE AI  +
Sbjct: 295 PSVVVRDTAAWTVGRICELL-PEAAINDV 322

>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The Snurportin1 Ibb- Domain Length = 876

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM-----DLVPAYVRLLRD 291
           D V H+LP I    ++  W  RY  A  +   C   GPEP+++       +P  + L++D
Sbjct: 362 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 292 NEAEVRIAAAGKVTKFCRILNPELAIQHI 320
               VR  AA  V + C +L PE AI  +
Sbjct: 420 PSVVVRDTAAWTVGRICELL-PEAAINDV 447

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	626
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	0.0
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	2e-67
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	3e-21
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	5e-20
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	3e-17
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	3e-18
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	5e-16
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	2e-10
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	9e-05
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	5e-18
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	3e-08
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	4e-04
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	6e-17
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	9e-12
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	1e-09
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	5e-07
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	1e-16
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	5e-14
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	2e-06
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	1e-13
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	2e-12
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	2e-11
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	2e-10
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	4e-05
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	9e-12
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	4e-11
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	4e-10
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	2e-08
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	1e-07
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	3e-11
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	3e-11
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	4e-11
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	7e-09
1qgr_A	876	Protein (importin beta subunit); transport recepto	3e-10
1qgr_A	876	Protein (importin beta subunit); transport recepto	4e-06
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	1e-07
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	3e-05
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	2e-07
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	8e-07
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	5e-06
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	1e-05
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	6e-05
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	5e-06
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	5e-04
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	1e-05
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	1e-04
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	2e-05
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	2e-04
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	6e-05
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	9e-05
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	1e-04
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-04
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	5e-04
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	3e-04
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	5e-04

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score =  536 bits (1383), Expect = 0.0
 Identities = 332/559 (59%), Positives = 419/559 (74%), Gaps = 4/559 (0%)

Query: 2   AMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDD 61
           A  D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+D
Sbjct: 3   ADGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED 62

Query: 62  EVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD 121
           EVLLA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SD
Sbjct: 63  EVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSD 122

Query: 122 LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRR 181
           L   ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR
Sbjct: 123 LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRR 182

Query: 182 SAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAH 241
           +AAS LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A 
Sbjct: 183 AAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEAL 242

Query: 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAA 301
           ++P +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+
Sbjct: 243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAAS 302

Query: 302 GKVTKFCRILNPELA----IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIE 357
            KV +FC  L+ +      +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE
Sbjct: 303 HKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIE 362

Query: 358 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAI 417
            LLP+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAI
Sbjct: 363 HLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAI 422

Query: 418 IEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIT 477
           IEY+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I 
Sbjct: 423 IEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATII 482

Query: 478 PQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKV 537
           P+VL M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK 
Sbjct: 483 PKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKS 542

Query: 538 LQSLIPIVDQSVSTFSVSP 556
           LQ + PI+D S     V P
Sbjct: 543 LQKIGPILDNSTLQSEVKP 561

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score =  229 bits (586), Expect = 2e-67
 Identities = 96/503 (19%), Positives = 191/503 (37%), Gaps = 7/503 (1%)

Query: 6   EPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLL 65
             L P   L      ++  +R  ++  L  I+            +P +      D     
Sbjct: 86  HCLLPP--LESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSR 143

Query: 66  AMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDW 125
             A  L               L      LC+ +   VR  A   L      +   ++   
Sbjct: 144 TSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSE 203

Query: 126 YIPLVKRLAAGEWFTARVSACG-LFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            IP+   LA+ E  + R+ A     +IA     + L+  +     Q  +D    VR   A
Sbjct: 204 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVA 263

Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEG----CAALGKLLEPQDCVA 240
               +    V P   KTD++  F++L +D +  VR  A       C  L         ++
Sbjct: 264 DKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS 323

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
            ILP I     D +  V+  +A+ +  L   +G + T   L+P ++  L+D   EVR+  
Sbjct: 324 QILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNI 383

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
              +     ++      Q +LP + EL+ D+   VR A+   +  +A  LG +   E+L 
Sbjct: 384 ISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLN 443

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
            + ++ L D    +R    S L ++ +  G +    +++P ++ ++ D ++  R+  +  
Sbjct: 444 SLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFC 503

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           I +L+   G       +    ++   D V ++R   A +L+++            + P +
Sbjct: 504 INVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPIL 563

Query: 481 LEMINNPHYLYRMTILRAISLLA 503
            ++  +     +     A+++L+
Sbjct: 564 EKLTQDQDVDVKYFAQEALTVLS 586

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 97.0 bits (241), Expect = 3e-21
 Identities = 37/263 (14%), Positives = 89/263 (33%), Gaps = 2/263 (0%)

Query: 11  IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSEN-NDDDDEVLLAMAE 69
           +  + + + + +  ++      +  ++  LG++ T + L+P       D+  EV L +  
Sbjct: 326 LPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIIS 385

Query: 70  ELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPL 129
            L      +G  + +  LLP +  L    +  VR   +E +  +  Q+      +    L
Sbjct: 386 NLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSL 445

Query: 130 VKRLAAGEWFTARVSACGLF-HIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLG 188
                    +  R +A      +      +     +      +  D   + R +    + 
Sbjct: 446 CMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCIN 505

Query: 189 KFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVN 248
             +           ++     +  D   +VR    +    +G +L+     + + P++  
Sbjct: 506 VLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEK 565

Query: 249 FSQDKSWRVRYMVANQLYELCEA 271
            +QD+   V+Y     L  L  A
Sbjct: 566 LTQDQDVDVKYFAQEALTVLSLA 588

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Length = 244

 Score = 88.8 bits (220), Expect = 5e-20
 Identities = 48/262 (18%), Positives = 80/262 (30%), Gaps = 85/262 (32%)

Query: 208 EDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYE 267
                D     R +AV                   +  +    +D    VR  VA +L  
Sbjct: 56  VQYLADPFWERRAIAVRYSP---------------VEALTPLIRDSDEVVRRAVAYRL-- 98

Query: 268 LCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKEL 327
                  E            L+ D + EVRI  A ++                L  ++++
Sbjct: 99  -----PRE--------QLSALMFDEDREVRITVADRLP---------------LEQLEQM 130

Query: 328 SSDSSQHVRSALASVI-MGMAPLLGKD-------ATIEQL-LPIFLSLLKDEFPDVRLNI 378
           ++D    VR+ +   I  G      +D          ++L       + +D  P+VR  +
Sbjct: 131 AADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIV 190

Query: 379 ISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG 438
            S+L                   ++EL  D  W VRLA +E+  L A +           
Sbjct: 191 ASRLRG---------------DDLLELLHDPDWTVRLAAVEHASLEALRE---------- 225

Query: 439 ALCMQWLQDKVYSIRDAAANNL 460
                 L +    +R A A  L
Sbjct: 226 ------LDEPDPEVRLAIAGRL 241

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Length = 244

 Score = 80.7 bits (199), Expect = 3e-17
 Identities = 50/301 (16%), Positives = 81/301 (26%), Gaps = 93/301 (30%)

Query: 92  ETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHI 151
              CT  + CV  ++   + R                L  +  A  ++  R  A      
Sbjct: 26  TGRCTPGDACVAVESGRQIDR---------FFRNNPHLAVQYLADPFWERRAIA------ 70

Query: 152 AYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT 211
              S  + L          L +D   +VRR+ A  L +                    L 
Sbjct: 71  VRYSPVEALT--------PLIRDSDEVVRRAVAYRLPR---------------EQLSALM 107

Query: 212 QDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVA-----NQLY 266
            D+   VR+   +                  L  +   + D+ + VR  V       +L+
Sbjct: 108 FDEDREVRITVADRLP---------------LEQLEQMAADRDYLVRAYVVQRIPPGRLF 152

Query: 267 ELC----EAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILP 322
                    V     +     +   + +D E EVR   A ++                  
Sbjct: 153 RFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRG---------------D 197

Query: 323 CVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKL 382
            + EL  D    VR A                  E      L  L +  P+VRL I  +L
Sbjct: 198 DLLELLHDPDWTVRLAAV----------------EHASLEALRELDEPDPEVRLAIAGRL 241

Query: 383 D 383
            
Sbjct: 242 G 242

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 84.5 bits (209), Expect = 3e-18
 Identities = 54/321 (16%), Positives = 104/321 (32%), Gaps = 54/321 (16%)

Query: 102 VRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILK 161
            + KA +          +    D    L + L          SA  L       A  +  
Sbjct: 6   QKRKASKEYGLYNQ--CKKLNDD---ELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAI 60

Query: 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDS-VRL 220
                   + C D   + R   A  LG+          + ++ +I  ++  +D+ + VR 
Sbjct: 61  --------EFCSDKNYIRRDIGAFILGQIKI---CKKCEDNVFNILNNMALNDKSACVRA 109

Query: 221 LAVEGCAALGKLLEPQD-CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM 279
            A+E   +  +  +        I+      + DKS  VR   A  +  + +         
Sbjct: 110 TAIE---STAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDK-------- 158

Query: 280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSAL 339
             +P  + LL+D   +VR  AA  +    +  N +     I  C  E+  D ++ VR   
Sbjct: 159 ATIPLLINLLKDPNGDVRNWAAFAININ-KYDNSD-----IRDCFVEMLQDKNEEVRIEA 212

Query: 340 ASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 399
              +             +++L +    LK     V  +II    +        L  ++LL
Sbjct: 213 IIGLSYRKD--------KRVLSVLCDELKKN--TVYDDIIEAAGE--------LGDKTLL 254

Query: 400 PAIVELAED-RHWRVRLAIIE 419
           P +  +        +  + I+
Sbjct: 255 PVLDTMLYKFDDNEIITSAID 275

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 77.9 bits (192), Expect = 5e-16
 Identities = 53/296 (17%), Positives = 101/296 (34%), Gaps = 54/296 (18%)

Query: 177 PMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ---DDQDSVRLLAVEGCAALGKLL 233
              +R A+   G +    +            ++L +   D     R+ +      L    
Sbjct: 4   TYQKRKASKEYGLYNQCKKLN---------DDELFRLLDDHNSLKRISSAR---VLQLRG 51

Query: 234 EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNE 293
                    + + + F  DK++  R + A  L ++      E    +++      L D  
Sbjct: 52  GQD-----AVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNN--MALNDKS 104

Query: 294 AEVRIAAA---GKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL 350
           A VR  A     +  K   I +P+     I+   +  + D S +VR A A  I      +
Sbjct: 105 ACVRATAIESTAQRCKKNPIYSPK-----IVEQSQITAFDKSTNVRRATAFAISV----I 155

Query: 351 GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRH 410
              ATI  L+     LLKD   DVR      ++           +  +    VE+ +D++
Sbjct: 156 NDKATIPLLIN----LLKDPNGDVRNWAAFAINI------NKYDNSDIRDCFVEMLQDKN 205

Query: 411 WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE 466
             VR+  I  +    S       D ++ ++    L+    ++ D        L ++
Sbjct: 206 EEVRIEAIIGL----SYRK----DKRVLSVLCDELKKN--TVYDDIIEAAGELGDK 251

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 61.0 bits (148), Expect = 2e-10
 Identities = 52/353 (14%), Positives = 105/353 (29%), Gaps = 89/353 (25%)

Query: 37  ARALG-----EERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPL 91
           ++  G     ++    EL   L   +D +    ++ A  L +      G + A   +   
Sbjct: 11  SKEYGLYNQCKKLNDDELFRLL---DDHNSLKRISSARVLQLR-----GGQDA---VRLA 59

Query: 92  ETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHI 151
              C+ +    RD     L +I    +  D V     ++  +                  
Sbjct: 60  IEFCSDKNYIRRDIGAFILGQIKICKKCEDNV---FNILNNM------------------ 98

Query: 152 AYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT 211
                                 D    VR +A  +  +          K  I+   +   
Sbjct: 99  -------------------ALNDKSACVRATAIESTAQRCKKNPIYSPK--IVEQSQITA 137

Query: 212 QDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 271
            D   +VR        A+  + +        +P+++N  +D +  VR   A  +      
Sbjct: 138 FDKSTNVRRATAF---AISVINDKA-----TIPLLINLLKDPNGDVRNWAAFAININ--K 187

Query: 272 VGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDS 331
                   D+   +V +L+D   EVRI A          L+     + +L  + +    +
Sbjct: 188 YDNS----DIRDCFVEMLQDKNEEVRIEAI-------IGLS-YRKDKRVLSVLCDELKKN 235

Query: 332 SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 384
           +  V   +          LG    +  L  +   L K +  ++  + I KL +
Sbjct: 236 T--VYDDIIEAAG----ELGDKTLLPVLDTM---LYKFDDNEIITSAIDKLKR 279

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 43.6 bits (103), Expect = 9e-05
 Identities = 25/179 (13%), Positives = 55/179 (30%), Gaps = 29/179 (16%)

Query: 11  IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEE 70
           +        +    +R  +   +S I     ++ T   LI  L    D + +V    A  
Sbjct: 130 VEQSQITAFDKSTNVRRATAFAISVI----NDKATIPLLINLL---KDPNGDVRNWAAFA 182

Query: 71  LGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLV 130
           + +        +++ +       +   +   VR +A+  L     +     ++     L 
Sbjct: 183 INI-----NKYDNSDIR-DCFVEMLQDKNEEVRIEAIIGLSYRKDK----RVLS---VLC 229

Query: 131 KRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGK 189
             L     +   + A G   +   +   +L T L        + D   +  SA   L +
Sbjct: 230 DELKKNTVYDDIIEAAG--ELGDKTLLPVLDTMLY-------KFDDNEIITSAIDKLKR 279

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 82.8 bits (204), Expect = 5e-18
 Identities = 36/218 (16%), Positives = 78/218 (35%), Gaps = 13/218 (5%)

Query: 232 LLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEPTRMDLVPAYVRLL 289
           LL+P D ++ +     +  ++K W +R      L +L              LV A  +++
Sbjct: 6   LLDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVI 65

Query: 290 -RDNEAEVRIAAAGKVTKFCRILNPELA--IQHILPCVKELSSDSSQHVRSALASVIMGM 346
            +D+   +   A   +    + L    +      +P + E   +   +V +AL   I  +
Sbjct: 66  TKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAI 125

Query: 347 APLLGKDATIEQLLPIFLSLLKDEFPDVR---LNIISK-LDQVNQVIGIDLLSQSLLPAI 402
                   ++E      +  L ++ P V+      I++ L +         L + L  ++
Sbjct: 126 Y----ASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSL 181

Query: 403 VELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL 440
           V+   +    VR +  E +  L   +G       L  +
Sbjct: 182 VKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 54.3 bits (130), Expect = 3e-08
 Identities = 29/194 (14%), Positives = 67/194 (34%), Gaps = 19/194 (9%)

Query: 194 VEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE-----PQDCVAHILPVIVN 248
           ++P  + + +   F D  ++ + ++R  ++E    L KLL             ++  +  
Sbjct: 7   LDPVDILSKMPKDFYDKLEEKKWTLRKESLE---VLEKLLTDHPKLENGEYGALVSALKK 63

Query: 249 -FSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVT 305
             ++D +  +  M    L  L + +           VP+ +   ++ +  V  A    + 
Sbjct: 64  VITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAID 123

Query: 306 KFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA----TIEQLLP 361
                 + E   + I+  +     + +  V+S  A  I          A     ++ L  
Sbjct: 124 AIYASTSLEAQQESIVESLS----NKNPSVKSETALFIARALTRTQPTALNKKLLKLLTT 179

Query: 362 IFLSLLKDEFPDVR 375
             +  L +  P VR
Sbjct: 180 SLVKTLNEPDPTVR 193

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 23/199 (11%), Positives = 59/199 (29%), Gaps = 17/199 (8%)

Query: 14  LIDELKNDDIQLRLNSIRRLSTIARALGEERTR--KELIPFLSE--NNDDDDEVLLAMAE 69
             D+L+     LR  S+  L  +     +        L+  L +    D +  ++    +
Sbjct: 20  FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGK 79

Query: 70  ELGVFIPYVGGV--EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYI 127
            L +    +      +A   +P L      ++  V     E++  I +        +  +
Sbjct: 80  CLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIV 139

Query: 128 PLVK------RLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRR 181
             +       +     +    ++      +       +  + +     +   +  P VR 
Sbjct: 140 ESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLV-----KTLNEPDPTVRD 194

Query: 182 SAASNLGKFAATVEPAHLK 200
           S+A  LG     +    + 
Sbjct: 195 SSAEALGTLIKLMGDKAVT 213

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 84.0 bits (206), Expect = 6e-17
 Identities = 92/671 (13%), Positives = 194/671 (28%), Gaps = 69/671 (10%)

Query: 11  IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTR--------KELIPFLSENNDDDD- 61
           +  L   + +D  QLR  S   L T+   L    +         K++   L+      + 
Sbjct: 88  VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED 147

Query: 62  -----EVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQ 116
                E L  MA+ L      +  V     +L  L    T     VR + + +L  +   
Sbjct: 148 VSVQLEALDIMADMLSRQGGLL--VNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMS 205

Query: 117 MRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIY---TQLCQ 173
                 VD    L+  L+  +  +   +           A   +   L  I     + C 
Sbjct: 206 CGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCN 265

Query: 174 DDMPMVRRSAASNLGKFAATVE---PAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG 230
            D   +R         F          H+ T I    + LT D   +      +  A   
Sbjct: 266 VDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDA 325

Query: 231 KLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEPTRMDLVPAYVRL 288
              +  D  +           D SW+VR   A  L  +              + PA +  
Sbjct: 326 DGGDDDDQGSDDEYSD---DDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISR 382

Query: 289 LRDNEAEVRIAAAGKVTKFCRILNP---------------------ELAIQHILPCVKEL 327
            ++ E  V+           +   P                     +  + +I+  + + 
Sbjct: 383 FKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQ 442

Query: 328 SSDSSQHVRSALASVIMGMAPLLGKDAT--IEQLLPIFLSLLKDEFPDVRLNI-----IS 380
             + S   R    +++  +  +L    T  I  L+P  +  L D+     L I     + 
Sbjct: 443 MKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLY 502

Query: 381 KLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF------FD 434
            +   +         Q+L+P +V    D  +++    +     L   +            
Sbjct: 503 VILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDAT 562

Query: 435 DKLGALCMQWLQ-----DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHY 489
             +  L    ++     D    +++ A + + ++    G            + +    + 
Sbjct: 563 PYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNE 622

Query: 490 LYRMTILRAISLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 546
           + R+T ++A++L+A               +P++ +  +     +K      L  LI    
Sbjct: 623 ITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYS 682

Query: 547 QSVSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCHRWWRKQSVPVWLSSL 606
            S++   +      L   ++  ++     A   +                  +   +  +
Sbjct: 683 DSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLV 742

Query: 607 RIQMLMSVFLP 617
           R  +L    L 
Sbjct: 743 RSPLLQGGALS 753

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 67.4 bits (163), Expect = 9e-12
 Identities = 59/421 (14%), Positives = 133/421 (31%), Gaps = 31/421 (7%)

Query: 14   LIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE----NNDDDDEVLLAMAE 69
            L   L+ +   L+L ++  L  + +   +  T   +   L E     ++ D  V      
Sbjct: 655  LASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAIS 714

Query: 70   ELGVFIPYVG--GVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDW-Y 126
             L            + +  +L  L  L       ++  A+ ++      +  +   +  Y
Sbjct: 715  FLTTLAKVYPSSLSKISGSILNELIGLVRSPL--LQGGALSAMLDFFQALVVTGTNNLGY 772

Query: 127  IPLVKRLAAGEW--------FTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPM 178
            + L++ L    +          +  S          + P      +      +       
Sbjct: 773  MDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTD 832

Query: 179  VRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDC 238
              R  A               + ++ S+  +      + V+  A     ALG +      
Sbjct: 833  SIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAA---SYALGSISVGN-- 887

Query: 239  VAHILPVIVNFSQDKSWRVRYMVANQLYEL---CEAVGPEPTRMDLVPAYVRLLRDNEAE 295
            +   LP ++        + +Y++ + L E+      VG +P   ++    ++     E  
Sbjct: 888  LPEYLPFVLQ-EITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEG 946

Query: 296  VRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT 355
             R   A  + K   I +PE  +  +   +   SS +   V +A+   I      +  D  
Sbjct: 947  TRNVVAECLGKLTLI-DPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPI--DPL 1003

Query: 356  IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQ--SLLPAIVELAEDRHWRV 413
            ++  +  FL  L+D   +VR   +   +         +     ++LP +    + R   +
Sbjct: 1004 LKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELI 1063

Query: 414  R 414
            R
Sbjct: 1064 R 1064

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 60.9 bits (146), Expect = 1e-09
 Identities = 44/303 (14%), Positives = 97/303 (32%), Gaps = 30/303 (9%)

Query: 203 IMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP------QDCVAHILPVIVNFSQDKSWR 256
           I ++ E +T  D+D  R +A      L   L+        D    ++ +I+   +DK+  
Sbjct: 8   ISNLLEKMTSSDKD-FRFMATN---DLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGE 63

Query: 257 VRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-- 314
           V+ +    L  L   V  E     +V      +  ++ ++R  ++  +      L P   
Sbjct: 64  VQNLAVKCLGPLVSKV-KEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS 122

Query: 315 ------LAIQHILPCVKELSSDSS-----QHVRSALASVIMGMAPLLGKDATIEQLLPIF 363
                    + I   +    +              +A ++     LL        +L   
Sbjct: 123 GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF--HPSILTCL 180

Query: 364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 423
           L  L      VR   I  L  +    G  +    +   + EL+++         I+ I  
Sbjct: 181 LPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAA 240

Query: 424 LASQLGVGFFD--DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVL 481
           ++ Q G    +  +K+  L +++       +R+      +        E  +      ++
Sbjct: 241 ISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKE--VYPHVSTII 298

Query: 482 EMI 484
            + 
Sbjct: 299 NIC 301

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 52.0 bits (123), Expect = 5e-07
 Identities = 30/210 (14%), Positives = 71/210 (33%), Gaps = 15/210 (7%)

Query: 354 ATIEQLLPIFLSLLKDEFPDVR---LNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRH 410
           A+    +   L  +     D R    N +    Q + +   D   + ++  I++L ED++
Sbjct: 2   ASASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKN 61

Query: 411 WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 470
             V+   ++ +  L S++     +  +  LC   +      +RD ++  LK +  E  P 
Sbjct: 62  GEVQNLAVKCLGPLVSKVKEYQVETIVDTLC-TNMLSDKEQLRDISSIGLKTVIGELPPA 120

Query: 471 WAMQHITPQVLEMI---------NNPHYLYRMTILRAISLLAPVMGSEITCS--RLLPVV 519
            +   +   V + I                ++  L  ++ +    G  +      +L  +
Sbjct: 121 SSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCL 180

Query: 520 INASKDRVPNIKFNVAKVLQSLIPIVDQSV 549
           +         ++      L  L+      V
Sbjct: 181 LPQLTSPRLAVRKRTIIALGHLVMSCGNIV 210

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 83.3 bits (205), Expect = 1e-16
 Identities = 81/632 (12%), Positives = 183/632 (28%), Gaps = 70/632 (11%)

Query: 12  AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDD---------E 62
              +  L + + ++   + + ++ IA          EL+  + +N   +           
Sbjct: 98  TNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLL 157

Query: 63  VLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCR----IGSQMR 118
            L  M E        +    +  ++        T     VR  A+ +L      I + M 
Sbjct: 158 ALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNME 217

Query: 119 ESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPM 178
                ++ + +V      E    + +A G            +K  +      L    M  
Sbjct: 218 REGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKS 277

Query: 179 VRRSAASNLGKFAATV--------------------EPAHLKTDIMSIFEDLTQ------ 212
                AS   +F +T+                          + I  +  +L        
Sbjct: 278 PNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQN 337

Query: 213 ---DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRY---MVANQLY 266
              +D D    ++   C  L         +  +L  +       +WR R    M    + 
Sbjct: 338 EDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIM 397

Query: 267 ELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQH----ILP 322
           +  + V         +P+ + L+ D   +V+   A  + +    +   +  Q     ++ 
Sbjct: 398 DGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQ 457

Query: 323 CVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKL 382
                  D  +   +   ++I            +EQL     S + + +P +   +I   
Sbjct: 458 ACLIGLQDHPKVATNCSWTIIN----------LVEQLAEATPSPIYNFYPALVDGLIGAA 507

Query: 383 DQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VGFFDDKLGAL 440
           ++++          S   A+  + E     V          +  +LG  +   +++L   
Sbjct: 508 NRIDN---EFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLE 564

Query: 441 CMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHY-LYRMTILRAI 499
             Q LQ+   +I    A  +++      P      +      ++           +  AI
Sbjct: 565 DAQSLQELQSNILTVLAAVIRKSPSSVEP--VADMLMGLFFRLLEKKDSAFIEDDVFYAI 622

Query: 500 SLLAPVMGSEIT--CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSPF 557
           S LA  +G           P ++ A       +       +  +   +++    +     
Sbjct: 623 SALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRY-SDAM 681

Query: 558 SFMLYLNVNNFNVGFIFAAFPLVLFSCLALNY 589
             +L   ++N N         L +F  +A N 
Sbjct: 682 MNVLAQMISNPNARRELKPAVLSVFGDIASNI 713

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 74.4 bits (182), Expect = 5e-14
 Identities = 85/590 (14%), Positives = 189/590 (32%), Gaps = 64/590 (10%)

Query: 11  IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTR--KELIPFLSE-NNDDDDEVLLAM 67
           I  L     +++ ++R N  R L  +     +        ++ ++ +   D D+ V L  
Sbjct: 217 IENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEA 276

Query: 68  AEELGVF----IPYVGGVEHAHVLLPPLETLCTVEETCVRD------------------- 104
            E         I     V H   L+P L       +  +                     
Sbjct: 277 CEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWN 336

Query: 105 --KAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKT 162
             K   +   + + +   +L+   +PL+K L     +  + S   +           +  
Sbjct: 337 LRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP 396

Query: 163 ELRSIYTQLCQ---DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVR 219
            L  +   L Q   D   +VR      L ++A  V      T +  +  +L +   DS +
Sbjct: 397 YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK 456

Query: 220 LLAVEGCAALGKLLEPQD-----CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP 274
            +    C+A   L E         +A+IL  +V        +   ++ + +  L ++VG 
Sbjct: 457 RVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGH 516

Query: 275 EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQH 334
              + + +   +  L              + K+  + + +  +  +L C+  +++     
Sbjct: 517 HLNKPEYIQMLMPPL--------------IQKWNMLKDEDKDLFPLLECLSSVATALQSG 562

Query: 335 VRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID-- 392
                  V      L+ K      L        +    D  +  +  L  + + +G +  
Sbjct: 563 FLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIE 622

Query: 393 --LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDK 448
             +   ++L  + +  +D+   VR +    +  L                 +    L  +
Sbjct: 623 QLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPE 682

Query: 449 VYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINNPHYLYRMT--ILRAISLLAP 504
             S+ + A   +  ++ + G E    +  +  Q++E+IN P+    +       I  L  
Sbjct: 683 FISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGY 742

Query: 505 VMGSEITCSRLLPVVINASKDRVPNIKFNVAK--VLQSLIPIVDQSVSTF 552
           V   E+     L   I      + NI+ N  K    + +  ++  + S  
Sbjct: 743 VCPQEVAPM--LQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGV 790

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 49.8 bits (118), Expect = 2e-06
 Identities = 41/275 (14%), Positives = 94/275 (34%), Gaps = 18/275 (6%)

Query: 227 AALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVA----NQLYELCEAVGPEPTRMDLV 282
             L +L +  D   + L  ++   + +    R +      N +    +   P      + 
Sbjct: 35  QKLEQLNQYPDFNNY-LIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNF-PNGVTDFIK 92

Query: 283 PAYVRLLRDNEAEVRIAAAGKVTKFCRILN----PELAIQHILPCVKELSSDSSQHVRSA 338
              +  + D+   +R      +T           P+L +  +   +     ++ +    A
Sbjct: 93  SECLNNIGDSSPLIRATVGILITTIASKGELQNWPDL-LPKLCSLLDSEDYNTCEGAFGA 151

Query: 339 LASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS 395
           L  +    A +L  D     +  ++P FL   K   P +R + ++ ++Q        L+ 
Sbjct: 152 LQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALML 211

Query: 396 --QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD--DKLGALCMQWLQDKVYS 451
              S +  +  LA D    VR  +   + +L              +    +Q  QD+  +
Sbjct: 212 HIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDEN 271

Query: 452 IRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN 486
           +   A      LAE+   +  +    P+++ ++ N
Sbjct: 272 VALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVN 306

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 70.5 bits (172), Expect = 1e-13
 Identities = 37/257 (14%), Positives = 97/257 (37%), Gaps = 11/257 (4%)

Query: 251 QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI 310
           +++ + +R  +AN    L + +        ++   + LL D+   V   A   +    + 
Sbjct: 4   EEEEFDIREALANG-EHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAK- 61

Query: 311 LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE 370
              +L    +      L    +  +   +A     MA    +   ++ ++P+  +  +  
Sbjct: 62  TREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE--LVKSMIPVLFANYRIG 119

Query: 371 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 430
               ++N+   L+++ +   + +   S++   + +   ++   +L  + +I  +      
Sbjct: 120 DEKTKINVSYALEEIAKANPMLM--ASIVRDFMSMLSSKNREDKLTALNFIEAMGEN-SF 176

Query: 431 GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYL 490
            + +  L  + +  L D    +R +A   L  LA        ++ +  + LE +N+   L
Sbjct: 177 KYVNPFLPRI-INLLHDGDEIVRASAVEALVHLATL---NDKLRKVVIKRLEELNDTSSL 232

Query: 491 YRMTILRAISLLAPVMG 507
              T+   IS L  + G
Sbjct: 233 VNKTVKEGISRLLLLEG 249

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 66.6 bits (162), Expect = 2e-12
 Identities = 43/260 (16%), Positives = 91/260 (35%), Gaps = 15/260 (5%)

Query: 18  LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSEN-NDDDDEVLLAMAEELGVFIP 76
           ++ ++  +R  ++     + + L   +  + ++  L E  +DD   V+      + V   
Sbjct: 3   MEEEEFDIR-EALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAK 61

Query: 77  YVGGVEHAHVLLPPLETLCT-VEETCVRDKAVESLCRIGSQMRESDLVDWYIP-LVKRLA 134
                +    +L  L +L    E   +  +  ++  ++  +  + +LV   IP L     
Sbjct: 62  --TREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE--KPELVKSMIPVLFANYR 117

Query: 135 AGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATV 194
            G+  T    +  L  IA  + P ++ + +R   + L        + +A + +       
Sbjct: 118 IGDEKTKINVSYALEEIA-KANPMLMASIVRDFMSML-SSKNREDKLTALNFIEAMG--E 173

Query: 195 EPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKS 254
                    +    +L  D  + VR  AVE   AL  L    D +  ++   +    D S
Sbjct: 174 NSFKYVNPFLPRIINLLHDGDEIVRASAVE---ALVHLATLNDKLRKVVIKRLEELNDTS 230

Query: 255 WRVRYMVANQLYELCEAVGP 274
             V   V   +  L    G 
Sbjct: 231 SLVNKTVKEGISRLLLLEGH 250

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 63.6 bits (154), Expect = 2e-11
 Identities = 42/260 (16%), Positives = 97/260 (37%), Gaps = 14/260 (5%)

Query: 98  EETCVRDKAV--ESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPS 155
           EE  +R+     E L +I    +  +       L++ L    W   + +   +  IA  +
Sbjct: 6   EEFDIREALANGEHLEKILIMAKYDE--SVLKKLIELLDDDLWTVVKNAISIIMVIA-KT 62

Query: 156 APDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQ 215
             D+ +  L+ +++ L + +   + +  A   G+ A   +P  +K+ I  +F +    D 
Sbjct: 63  REDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAK-EKPELVKSMIPVLFANYRIGD- 120

Query: 216 DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE 275
           +  ++        + K       +A I+   ++    K+   +    N +  + E    +
Sbjct: 121 EKTKINVSYALEEIAKANP--MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGEN-SFK 177

Query: 276 PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHV 335
                 +P  + LL D +  VR +A         +      ++ ++    E  +D+S  V
Sbjct: 178 YVN-PFLPRIINLLHDGDEIVRASAV---EALVHLATLNDKLRKVVIKRLEELNDTSSLV 233

Query: 336 RSALASVIMGMAPLLGKDAT 355
              +   I  +  L G  ++
Sbjct: 234 NKTVKEGISRLLLLEGHSSS 253

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 60.9 bits (147), Expect = 2e-10
 Identities = 43/265 (16%), Positives = 100/265 (37%), Gaps = 17/265 (6%)

Query: 289 LRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP 348
           + + E ++R A A       +IL      + +L  + EL  D    V     S+IM +A 
Sbjct: 3   MEEEEFDIREALA-NGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAK 61

Query: 349 LLGKDATIEQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE 407
              ++   E +L    SLL K E   +   I     Q+ +      L +S++P +     
Sbjct: 62  --TREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP--ELVKSMIPVLFANYR 117

Query: 408 DRHWRVRLAIIEYIPLLASQLGVGFFD--DKLGALCMQWLQDKVYSIRDAAANNLKRLAE 465
               + ++ +   +  +A    +          ++    L  K    +  A N ++ + E
Sbjct: 118 IGDEKTKINVSYALEEIAKANPMLMASIVRDFMSM----LSSKNREDKLTALNFIEAMGE 173

Query: 466 EFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKD 525
               ++    + P+++ ++++   + R + + A+  LA +        +++   +    D
Sbjct: 174 N-SFKYVNPFL-PRIINLLHDGDEIVRASAVEALVHLATLNDKLR---KVVIKRLEELND 228

Query: 526 RVPNIKFNVAKVLQSLIPIVDQSVS 550
               +   V + +  L+ +   S S
Sbjct: 229 TSSLVNKTVKEGISRLLLLEGHSSS 253

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 44.7 bits (105), Expect = 4e-05
 Identities = 24/186 (12%), Positives = 73/186 (39%), Gaps = 6/186 (3%)

Query: 367 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 426
           +++E  D+R   ++  + + +++ +    +S+L  ++EL +D  W V    I  I ++A 
Sbjct: 3   MEEEEFDIR-EALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAK 61

Query: 427 QLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN 486
                 ++  L  L     + +   +    A    ++A+E      ++ + P +      
Sbjct: 62  T-REDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP--ELVKSMIPVLFANYRI 118

Query: 487 PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 546
                ++ +  A+  +A      +  + ++   ++    +    K      ++++     
Sbjct: 119 GDEKTKINVSYALEEIAKANPMLM--ASIVRDFMSMLSSKNREDKLTALNFIEAMGENSF 176

Query: 547 QSVSTF 552
           + V+ F
Sbjct: 177 KYVNPF 182

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 63.5 bits (155), Expect = 9e-12
 Identities = 48/238 (20%), Positives = 93/238 (39%), Gaps = 45/238 (18%)

Query: 228 ALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVR 287
                 +P+      + + +   QD S+ VR   A  L      +G E      V   ++
Sbjct: 6   HHHHHTDPEK-----VEMYIKNLQDDSYYVRRAAAYAL----GKIGDERA----VEPLIK 52

Query: 288 LLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMA 347
            L+D +A VR AAA  + +    +  E A++ ++    +   D    VR + A+V +G  
Sbjct: 53  ALKDEDAWVRRAAADALGQ----IGDERAVEPLI----KALKDEDGWVRQS-AAVALGQ- 102

Query: 348 PLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE 407
             +G +  +E L+      LKDE   VR+     L +    IG     +  +  +++  +
Sbjct: 103 --IGDERAVEPLIK----ALKDEDWFVRIAAAFALGE----IG----DERAVEPLIKALK 148

Query: 408 DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 465
           D    VR +  + +     ++G     +++ A   +  +      R  A N L+    
Sbjct: 149 DEDGWVRQSAADAL----GEIG----GERVRAAMEKLAETGTGFARKVAVNYLETHKS 198

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 61.6 bits (150), Expect = 4e-11
 Identities = 46/215 (21%), Positives = 81/215 (37%), Gaps = 40/215 (18%)

Query: 170 QLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAAL 229
           +  QDD   VRR+AA  LGK         L            +D+   VR  A +   AL
Sbjct: 21  KNLQDDSYYVRRAAAYALGKIGDERAVEPL--------IKALKDEDAWVRRAAAD---AL 69

Query: 230 GKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL 289
           G++ + +      +  ++   +D+   VR   A  L ++    G E      V   ++ L
Sbjct: 70  GQIGDER-----AVEPLIKALKDEDGWVRQSAAVALGQI----GDERA----VEPLIKAL 116

Query: 290 RDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL 349
           +D +  VRIAAA         +  E A++ ++  +K    D    VR + A  +  +   
Sbjct: 117 KDEDWFVRIAAA----FALGEIGDERAVEPLIKALK----DEDGWVRQSAADALGEIGG- 167

Query: 350 LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 384
                  E++      L +      R   ++ L+ 
Sbjct: 168 -------ERVRAAMEKLAETGTGFARKVAVNYLET 195

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 58.9 bits (143), Expect = 4e-10
 Identities = 44/214 (20%), Positives = 75/214 (35%), Gaps = 39/214 (18%)

Query: 88  LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACG 147
           +         +   VR  A  +L +IG +      V+   PL+K L   + +  R +A  
Sbjct: 16  VEMYIKNLQDDSYYVRRAAAYALGKIGDE----RAVE---PLIKALKDEDAWVRRAAADA 68

Query: 148 LFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIF 207
           L  I    A + L   L        +D+   VR+SAA  LG+         L        
Sbjct: 69  LGQIGDERAVEPLIKAL--------KDEDGWVRQSAAVALGQIGDERAVEPL-------- 112

Query: 208 EDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYE 267
               +D+   VR+ A     ALG++ + +      +  ++   +D+   VR   A+ L E
Sbjct: 113 IKALKDEDWFVRIAAAF---ALGEIGDER-----AVEPLIKALKDEDGWVRQSAADALGE 164

Query: 268 LCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAA 301
           +            +  A  +L        R  A 
Sbjct: 165 IGGE--------RVRAAMEKLAETGTGFARKVAV 190

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 43/184 (23%), Positives = 71/184 (38%), Gaps = 30/184 (16%)

Query: 11  IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEE 70
           +  LI  LK++D  +R  +   L      +G+ER  + LI  L    D+D  V  + A  
Sbjct: 47  VEPLIKALKDEDAWVRRAAADALG----QIGDERAVEPLIKAL---KDEDGWVRQSAAVA 99

Query: 71  LGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLV 130
           LG       G E A   + PL      E+  VR  A  +L  IG +      V+   PL+
Sbjct: 100 LGQI-----GDERA---VEPLIKALKDEDWFVRIAAAFALGEIGDE----RAVE---PLI 144

Query: 131 KRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKF 190
           K L   + +  + +A  L  I        ++        +L +      R+ A + L   
Sbjct: 145 KALKDEDGWVRQSAADALGEIGGERVRAAME--------KLAETGTGFARKVAVNYLETH 196

Query: 191 AATV 194
            + +
Sbjct: 197 KSLI 200

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 47/238 (19%), Positives = 90/238 (37%), Gaps = 45/238 (18%)

Query: 265 LYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCV 324
            +       PE      V  Y++ L+D+   VR AAA  + K    +  E A++ ++  +
Sbjct: 4   SHHHHHHTDPE-----KVEMYIKNLQDDSYYVRRAAAYALGK----IGDERAVEPLIKAL 54

Query: 325 KELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 384
           K    D    VR A A+  +G    +G +  +E L+      LKDE   VR +    L Q
Sbjct: 55  K----DEDAWVRRA-AADALGQ---IGDERAVEPLIK----ALKDEDGWVRQSAAVALGQ 102

Query: 385 VNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW 444
           +          +  +  +++  +D  W VR+A    +  +  +  V    + L       
Sbjct: 103 IG--------DERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAV----EPLIKA---- 146

Query: 445 LQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLL 502
           L+D+   +R +AA+ L  +  E         +   + ++        R   +  +   
Sbjct: 147 LKDEDGWVRQSAADALGEIGGE--------RVRAAMEKLAETGTGFARKVAVNYLETH 196

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 62.4 bits (152), Expect = 3e-11
 Identities = 51/249 (20%), Positives = 96/249 (38%), Gaps = 49/249 (19%)

Query: 227 AALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYV 286
           AA     +P+      + + +   QD S+ VR   A  L      +G E      V   +
Sbjct: 10  AAAPLRADPEK-----VEMYIKNLQDDSYYVRRAAAYAL----GKIGDERA----VEPLI 56

Query: 287 RLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGM 346
           + L+D +A VR AAA  + +    +  E A++ ++    +   D    VR + A+V +G 
Sbjct: 57  KALKDEDAWVRRAAADALGQ----IGDERAVEPLI----KALKDEDGWVRQS-AAVALGQ 107

Query: 347 APLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA 406
              +G +  +E L+      LKDE   VR+     L +    IG     +  +  +++  
Sbjct: 108 ---IGDERAVEPLIK----ALKDEDWFVRIAAAFALGE----IG----DERAVEPLIKAL 152

Query: 407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE 466
           +D    VR +  + +     ++G     +++ A   +  +      R  A N L+     
Sbjct: 153 KDEDGWVRQSAADAL----GEIG----GERVRAAMEKLAETGTGFARKVAVNYLETH--- 201

Query: 467 FGPEWAMQH 475
                   H
Sbjct: 202 -KSFNHHHH 209

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 62.0 bits (151), Expect = 3e-11
 Identities = 45/214 (21%), Positives = 79/214 (36%), Gaps = 44/214 (20%)

Query: 173 QDDMPMVRRSAASNLGKF--AATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG 230
           QDD   VRR+AA  LGK      VEP               +D+   VR  A +   ALG
Sbjct: 29  QDDSYYVRRAAAYALGKIGDERAVEP----------LIKALKDEDAWVRRAAAD---ALG 75

Query: 231 KLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR 290
           ++ + +      +  ++   +D+   VR   A  L ++ +           V   ++ L+
Sbjct: 76  QIGDER-----AVEPLIKALKDEDGWVRQSAAVALGQIGDE--------RAVEPLIKALK 122

Query: 291 DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL 350
           D +  VRIAAA         L  E+  +  +  + +   D    VR + A  +      +
Sbjct: 123 DEDWFVRIAAA-------FAL-GEIGDERAVEPLIKALKDEDGWVRQSAADALG----EI 170

Query: 351 GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 384
           G +     +      L +      R   ++ L+ 
Sbjct: 171 GGERVRAAMEK----LAETGTGFARKVAVNYLET 200

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 62.0 bits (151), Expect = 4e-11
 Identities = 43/214 (20%), Positives = 75/214 (35%), Gaps = 39/214 (18%)

Query: 88  LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACG 147
           +         +   VR  A  +L +IG +      V+   PL+K L   + +  R +A  
Sbjct: 21  VEMYIKNLQDDSYYVRRAAAYALGKIGDE----RAVE---PLIKALKDEDAWVRRAAADA 73

Query: 148 LFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIF 207
           L  I    A + L         +  +D+   VR+SAA  LG+         L        
Sbjct: 74  LGQIGDERAVEPL--------IKALKDEDGWVRQSAAVALGQIGDERAVEPL-------- 117

Query: 208 EDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYE 267
               +D+   VR+ A     ALG++ + +      +  ++   +D+   VR   A+ L E
Sbjct: 118 IKALKDEDWFVRIAAAF---ALGEIGDER-----AVEPLIKALKDEDGWVRQSAADALGE 169

Query: 268 LCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAA 301
           +            +  A  +L        R  A 
Sbjct: 170 IGGE--------RVRAAMEKLAETGTGFARKVAV 195

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 55.4 bits (134), Expect = 7e-09
 Identities = 44/188 (23%), Positives = 71/188 (37%), Gaps = 30/188 (15%)

Query: 11  IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEE 70
           +  LI  LK++D  +R  +   L      +G+ER  + LI  L    D+D  V  + A  
Sbjct: 52  VEPLIKALKDEDAWVRRAAADALG----QIGDERAVEPLIKAL---KDEDGWVRQSAAVA 104

Query: 71  LGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLV 130
           LG       G E A   + PL      E+  VR  A  +L  IG +      V+   PL+
Sbjct: 105 LGQI-----GDERA---VEPLIKALKDEDWFVRIAAAFALGEIGDE----RAVE---PLI 149

Query: 131 KRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKF 190
           K L   + +  + +A  L  I        ++        +L +      R+ A + L   
Sbjct: 150 KALKDEDGWVRQSAADALGEIGGERVRAAME--------KLAETGTGFARKVAVNYLETH 201

Query: 191 AATVEPAH 198
            +     H
Sbjct: 202 KSFNHHHH 209

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score = 62.6 bits (151), Expect = 3e-10
 Identities = 85/565 (15%), Positives = 180/565 (31%), Gaps = 63/565 (11%)

Query: 20  NDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSEN---NDDDDEVLLAMAEELGVFIP 76
             +     ++ + ++ IA A        ELIP L  N    +  + +  +  E +G    
Sbjct: 100 GTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159

Query: 77  YVGG---VEHAHVLLPPLETLCTVEET--CVRDKAVESLCRIGSQMRESDLVDWYIPLVK 131
            +      + ++ +L  +      EE    V+  A  +L       + +   +     + 
Sbjct: 160 DIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIM 219

Query: 132 RLAAGEWFT----ARVSACGLFHIAYPSAPDILKTELRSI-------------------- 167
           ++            RV+A              ++T +                       
Sbjct: 220 QVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQG 279

Query: 168 ---YTQLCQDDMPMVRRSA-ASNLGKFAATVEPAHLKTDIMSIFEDLTQ---------DD 214
              ++ +C ++M +   ++ A+  G+        + K  +  +   LTQ         DD
Sbjct: 280 IEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDD 339

Query: 215 QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVR---YMVANQLYELCEA 271
            D     A   C  L       D V H+LP I    ++  WR R    M    + E  E 
Sbjct: 340 DDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP 399

Query: 272 VGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILP---CVKELS 328
              +P  +  +P  + L++D    VR  AA  V + C +L         L          
Sbjct: 400 SQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEG 459

Query: 329 SDSSQHVRSALASVIMGMAPLLGKDATI-EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 387
             +   V S +      +A    + A + +         L   F  +   ++   D+ + 
Sbjct: 460 LSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDG 519

Query: 388 VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD 447
               + L  S   +++E+ ++       A+ +   ++  +L           +     + 
Sbjct: 520 --HQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERL--QQVLQMESHIQSTSDRI 575

Query: 448 KVYSIRDAAANNLKRLAEEFGPEWAMQH---ITPQVLEMINN--PHYLYRMTILRAISLL 502
           +   ++      L+ +  +   + A+Q    +   +L M  +       +   L A+S L
Sbjct: 576 QFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTL 635

Query: 503 APVMGSEIT--CSRLLPVVINASKD 525
             V+G E         P +    K+
Sbjct: 636 VEVLGGEFLKYMEAFKPFLGIGLKN 660

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score = 49.1 bits (116), Expect = 4e-06
 Identities = 65/446 (14%), Positives = 146/446 (32%), Gaps = 33/446 (7%)

Query: 98  EETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFH-IAYPSA 156
           ++     KA      + +   E D+V   +P +K       +  R +A   F  I     
Sbjct: 339 DDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE 398

Query: 157 PDILKTELRSIYTQLC---QDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD 213
           P  LK  +      L    +D   +VR +AA  +G+    +  A +    ++       +
Sbjct: 399 PSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIE 458

Query: 214 DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG 273
              +   +A   C A   L E     A +       +         ++  +L E  +   
Sbjct: 459 GLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDR-- 516

Query: 274 PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA--IQHILPCVKELSSDS 331
           P+  + +L  +    L +            V K   ++   L   +Q             
Sbjct: 517 PDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQ 576

Query: 332 SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-----DEFPDVRLNIISKLDQVN 386
              ++S L + +  +   +     ++    +  SLL+          V+ + +  +  + 
Sbjct: 577 FNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLV 636

Query: 387 QVIGIDLLS--QSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVGF--FDDKLGALC 441
           +V+G + L   ++  P +    ++   ++V LA +  +  L   L      F D++  L 
Sbjct: 637 EVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLL 696

Query: 442 MQWLQDKVY--SIRDAAANNLKRLAEEFGPE-------------WAMQHITPQVLEMINN 486
           ++ L ++    S++    +    +A   G E              A Q    +    + +
Sbjct: 697 LENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVD 756

Query: 487 PHYLYRMTILRAISLLAPVMGSEITC 512
                R + L A + +   +  +   
Sbjct: 757 YLNELRESCLEAYTGIVQGLKGDQEN 782

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462

 Score = 53.3 bits (127), Expect = 1e-07
 Identities = 52/368 (14%), Positives = 102/368 (27%), Gaps = 33/368 (8%)

Query: 21  DDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVF------ 74
            +     ++ + ++ IA A        ELIP L  N  + +         L         
Sbjct: 101 TETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQD 160

Query: 75  IPYVGGVEHAHVLLPPLETLCTVEET--CVRDKAVESLCRIGSQMRESDLVDWYIPLVKR 132
           I      + ++ +L  +      EE    V+  A  +L       + +   +     + +
Sbjct: 161 IDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQ 220

Query: 133 LAAGEWFT----ARVSACGLFHIAYPSAPDILKTELR----SIYTQLCQDDMPMVRRSAA 184
           +            RV+A              ++T +     +I  +  + D+  V     
Sbjct: 221 VVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGI 280

Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
                            D+     +  +  +            AL  L+     +   L 
Sbjct: 281 EFWSNVCDEEM------DLAIEASEAAEQGRPPEHTSKFYAKGALQYLV---PILTQTLT 331

Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPE--PTRMDLVPAYVRLLRDNEAEVRIAAAG 302
                  D  W         L  L      +  P  +  +  +   +++ +   R AA  
Sbjct: 332 KQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEH---IKNPDWRYRDAAVM 388

Query: 303 KVTKFCRILNPELA---IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQL 359
                     P      +   +P + EL  D S  VR   A  +  +  LL + A  +  
Sbjct: 389 AFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY 448

Query: 360 LPIFLSLL 367
           L   L  L
Sbjct: 449 LAPLLQCL 456

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462

 Score = 46.0 bits (108), Expect = 3e-05
 Identities = 50/333 (15%), Positives = 101/333 (30%), Gaps = 37/333 (11%)

Query: 173 QDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDS-----VRLLAVEGCA 227
            +    ++ S    +G     ++P  L+     I   + Q  +       V+L A     
Sbjct: 140 PNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALL 199

Query: 228 ALGKLLEPQDCVAH----ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDL 281
              +  +           I+ V+   +Q    RVR      L ++        E      
Sbjct: 200 NSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPA 259

Query: 282 VPAY-VRLLRDNEAEVRIAAAGKVTKFCR------ILNPELAIQHILPCVKELSSDSSQH 334
           + A  +  ++ +  EV +      +  C       I   E A Q   P        S  +
Sbjct: 260 LFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHT-----SKFY 314

Query: 335 VRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL 394
            + AL  ++  +   L K    +           D+  +        L  +      D++
Sbjct: 315 AKGALQYLVPILTQTLTKQDENDD----------DDDWNPCKAAGVCLMLLATCCEDDIV 364

Query: 395 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL---CMQWLQDKVYS 451
              +LP I E  ++  WR R A +     +            +       ++ ++D    
Sbjct: 365 -PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVV 423

Query: 452 IRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI 484
           +RD AA  + R+ E              +L+ +
Sbjct: 424 VRDTAAWTVGRICELLPEAAINDVYLAPLLQCL 456

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 53.5 bits (128), Expect = 2e-07
 Identities = 38/211 (18%), Positives = 80/211 (37%), Gaps = 11/211 (5%)

Query: 203 IMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVA 262
           +  +F+ L+    D+   +A E  + L   +   D   H    +    +DK      M A
Sbjct: 16  LEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTAANAMQA 75

Query: 263 NQLYELCEAVGP--EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 320
                    + P  EP  + LVPA      + + E++  A+  +      +NP  AI+ +
Sbjct: 76  VAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV-AIKAL 134

Query: 321 LPCVKELSSDSSQHVRSALASV-IMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRL 376
           LP +   +   +   +  +A +          KD     + +L+P+    + D   +V+ 
Sbjct: 135 LPHLTN-AIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKA 193

Query: 377 NIISKLDQVNQVIG---IDLLSQSLLPAIVE 404
              + + +  + +    I+    SL+  I +
Sbjct: 194 AATAAMTKATETVDNKDIERFIPSLIQCIAD 224

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Length = 800

 Score = 52.2 bits (124), Expect = 4e-07
 Identities = 42/339 (12%), Positives = 118/339 (34%), Gaps = 30/339 (8%)

Query: 224 EGCA-ALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLV 282
           +  A  L ++         I+  +V F     W+V++     L  L E V  +     L 
Sbjct: 246 DAAAYLLSRIYPLIG-PNDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVEDKD---GLC 301

Query: 283 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASV 342
              V LL   + ++++ +A  +  F    + +L ++     ++     S      +  S 
Sbjct: 302 RKLVSLLSSPDEDIKLLSAELLCHFPITDSLDLVLEKCWKNIESEELIS-----VSKTSN 356

Query: 343 IMGMAPLLGKDATIE---QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 399
           +  +  +  ++  +    + L           P+VR +I++ +  +++     L+++ +L
Sbjct: 357 LSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLSEESIDFLVAEVVL 416

Query: 400 ----PAIVELAEDRHWRVRLAIIE-YIPLLASQLGVGFF-----DDKLGALCMQWLQDKV 449
                 I E+A  +  + R  + +  I    + +G   +     DD +    + + +  +
Sbjct: 417 IEEKDEIREMAI-KLLKKRRDLPKNLILHFMNVIGGSLYEPYSEDDFVSYEDLYFTKSGI 475

Query: 450 YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE 509
             +        + L  E   +  +  +   +    +   ++     ++A+    P   + 
Sbjct: 476 NVVGKDEILKNRCLLFECIMKSGLPDLQSTIETTTSRT-FISLYRSVQALVKDTPYTPAN 534

Query: 510 IT-----CSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 543
           I        R   + +   K+    +     + +  ++ 
Sbjct: 535 IEELEYYFDRCKDLKMAPLKEFKKKLSAPGIRSIHPMVD 573

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 4e-07
 Identities = 69/462 (14%), Positives = 144/462 (31%), Gaps = 144/462 (31%)

Query: 217 SVRLLAVEGCAA---------------LGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMV 261
           +   +A++ C +               L     P+  +  +  ++     + + R  +  
Sbjct: 164 TW--VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221

Query: 262 ANQLYELCEAVGPEPTRMDLVPAYVR--LLRDNEAEVRIAAAGKVTKF---CRIL----N 312
             +L     ++  E  R+     Y    L+  N    +   A     F   C+IL     
Sbjct: 222 NIKL--RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA-----FNLSCKILLTTRF 274

Query: 313 PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFP 372
            ++           LS+ ++ H+       +   +  L  D   + LL  +L     + P
Sbjct: 275 KQVT--------DFLSAATTTHIS------LDHHSMTLTPDEV-KSLLLKYLDCRPQDLP 319

Query: 373 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF 432
                         +V+  +    S++   +        R  LA  +             
Sbjct: 320 -------------REVLTTNPRRLSIIAESI--------RDGLATWDN------------ 346

Query: 433 FDDKLGALCMQWLQ---DKVYSIRDAAANNL-----KRLAEEFG--PEWAMQHITPQVLE 482
                      W     DK+ +I +++ N L     +++ +     P  A  HI   +L 
Sbjct: 347 -----------WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA--HIPTILLS 393

Query: 483 MI-NNPHYLYRMTI---LRAISLLAPVMGSEITCSRLLPVVINASKDRVPNI-------- 530
           +I  +      M +   L   SL+      E T S  +P +    K ++ N         
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEK-QPKESTIS--IPSIYLELKVKLENEYALHRSIV 450

Query: 531 -KFNVAKVLQS---LIPIVDQSVSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLA 586
             +N+ K   S   + P +DQ         +S + + ++ N         F +V      
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYF-------YSHIGH-HLKNIEHPERMTLFRMVF----- 497

Query: 587 LNYCHRWWR---KQSVPVWLSSLRIQMLMSVFLPLKPFSRLI 625
           L++  R+     +     W +S     +++    LK +   I
Sbjct: 498 LDF--RFLEQKIRHDSTAWNAS---GSILNTLQQLKFYKPYI 534

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 6e-06
 Identities = 63/399 (15%), Positives = 123/399 (30%), Gaps = 128/399 (32%)

Query: 193 TVEPAHLKTDIMSIFE-----DL-TQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVI 246
           T E  +   DI+S+FE     +   +D QD  +  ++     +  ++  +D V+  L + 
Sbjct: 11  TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPK--SILSKEEIDHIIMSKDAVSGTLRLF 68

Query: 247 VNFSQDKSWRVRYMVANQL---YE-LCEAV-----GPEPTRMDLVPAYVRLLRDNEAEVR 297
                 +   V+  V   L   Y+ L   +      P       +    RL  DN+    
Sbjct: 69  WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ---- 124

Query: 298 IAAAGKVTKF--CRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--- 352
                   K+   R+  P L ++  L    EL    +++V      +I G+    GK   
Sbjct: 125 -----VFAKYNVSRL-QPYLKLRQAL---LEL--RPAKNV------LIDGVLG-SGKTWV 166

Query: 353 ------DATIEQLLP--IF-LSLLKDEFPDVRLNIISKL---------DQVNQVIGIDLL 394
                    ++  +   IF L+L     P+  L ++ KL          + +    I L 
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 395 SQSLLPAIVELAEDR----------------HWRV------------------RLAIIEY 420
             S+   +  L + +                 W                     L+    
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
             +      +    D++ +L +++L  +            + L  E      +    P+ 
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRP-----------QDLPRE------VLTTNPRR 329

Query: 481 LEMI-----NNP-------HYLY-RMTILRAISL--LAP 504
           L +I     +         H    ++T +   SL  L P
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 47.7 bits (114), Expect = 8e-07
 Identities = 31/144 (21%), Positives = 50/144 (34%), Gaps = 27/144 (18%)

Query: 88  LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACG 147
           L P  +    E   VR     +L R+G +  E        PL++ L+  +W     +A  
Sbjct: 14  LVPRGSHMADENKWVRRDVSTALSRMGDEAFE--------PLLESLSNEDWRIRGAAAWI 65

Query: 148 LFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIF 207
           + +     A + L         +L +DD   VR  AA +L +       A +        
Sbjct: 66  IGNFQDERAVEPL--------IKLLEDDSGFVRSGAARSLEQIGGERVRAAM-------- 109

Query: 208 EDLTQDDQDSVRLLAVEGCAALGK 231
           E L +      R +AV     L  
Sbjct: 110 EKLAETGTGFARKVAVN---YLET 130

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 25/138 (18%)

Query: 282 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALAS 341
           +      + D    VR   +  +++    +  E A + +L  +     +    +R A A+
Sbjct: 14  LVPRGSHMADENKWVRRDVSTALSR----MGDE-AFEPLLESLS----NEDWRIRGA-AA 63

Query: 342 VIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA 401
            I+G       +  +E L+     LL+D+   VR      L+Q    IG     + +  A
Sbjct: 64  WIIGN---FQDERAVEPLIK----LLEDDSGFVRSGAARSLEQ----IG----GERVRAA 108

Query: 402 IVELAEDRHWRVRLAIIE 419
           + +LAE      R   + 
Sbjct: 109 MEKLAETGTGFARKVAVN 126

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 21/158 (13%), Positives = 42/158 (26%), Gaps = 27/158 (17%)

Query: 33  LSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLE 92
           + +                 +    D++  V   ++  L                  PL 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHM---ADENKWVRRDVSTALS---------RMGDEAFEPLL 48

Query: 93  TLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIA 152
              + E+  +R  A   +     +      V+   PL+K L     F    +A  L  I 
Sbjct: 49  ESLSNEDWRIRGAAAWIIGNFQDE----RAVE---PLIKLLEDDSGFVRSGAARSLEQIG 101

Query: 153 YPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKF 190
                  ++        +L +      R+ A + L   
Sbjct: 102 GERVRAAME--------KLAETGTGFARKVAVNYLETH 131

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 23/136 (16%), Positives = 46/136 (33%), Gaps = 31/136 (22%)

Query: 251 QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAA---GKVTKF 307
            D++  VR  V+  L  + +               +  L + +  +R AAA   G     
Sbjct: 22  ADENKWVRRDVSTALSRMGDEA---------FEPLLESLSNEDWRIRGAAAWIIGN---- 68

Query: 308 CRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL 367
                 E A++ ++  ++    D S  VRS  A  +      +G +     +      L 
Sbjct: 69  ---FQDERAVEPLIKLLE----DDSGFVRSGAARSLEQ----IGGERVRAAMEK----LA 113

Query: 368 KDEFPDVRLNIISKLD 383
           +      R   ++ L+
Sbjct: 114 ETGTGFARKVAVNYLE 129

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249

 Score = 47.4 bits (112), Expect = 5e-06
 Identities = 27/217 (12%), Positives = 69/217 (31%), Gaps = 19/217 (8%)

Query: 232 LLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-----MDLVPAYV 286
           +L  +  +  +            W+ R     + ++   +   +         +L+  Y 
Sbjct: 7   MLPEETILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYG 66

Query: 287 RLL-RDNEAEVRIAAAGKVTKFCRILNPELAIQH----ILPCVKELSSDSSQHVRSALAS 341
            ++ +D   +    AA  V   C  L      +     +   + + + +    V  A+  
Sbjct: 67  HIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRK 126

Query: 342 VIMGMAPLLGKDA---TIEQLLPIFLSLLKDEFPDVR---LNIISK-LDQVNQVIGI--D 392
            ++ +       A     E +L   L  +K + P +R     + +  + +          
Sbjct: 127 ALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQR 186

Query: 393 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 429
            L   ++P ++++  D    +R    E   +L    G
Sbjct: 187 YLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFG 223

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249

 Score = 41.2 bits (96), Expect = 5e-04
 Identities = 22/181 (12%), Positives = 64/181 (35%), Gaps = 16/181 (8%)

Query: 210 LTQDDQDSVRLLAVEGCAALGKLLEPQD----CVAHILPVIVNFSQDKSWRVRYMVANQL 265
           + +D       LA +    +   L+        V+ +   +++ +++K   V   +   L
Sbjct: 69  IQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKAL 128

Query: 266 YELCEAVGPEPTRM---DLVPAYVRLLRDNEAEVRIAAAG------KVTKFCRILNPELA 316
             +C+   P  +     D++   +  ++    ++R+          K  K          
Sbjct: 129 LTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYL 188

Query: 317 IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA---TIEQLLPIFLSLLKDEFPD 373
              ++P V ++ +D+   +R+        +  + G +    T+E L  +    +++    
Sbjct: 189 KDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRKKIEETVKT 248

Query: 374 V 374
           +
Sbjct: 249 L 249

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963

 Score = 47.9 bits (113), Expect = 1e-05
 Identities = 50/299 (16%), Positives = 89/299 (29%), Gaps = 29/299 (9%)

Query: 14  LIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGV 73
                  D   L   +   +   A         + L   L    +D      A A  +G+
Sbjct: 442 SGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVL---YNDSATSGEAAALGMGL 498

Query: 74  FIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAV-ESLCRIGSQMRESDLVDWYIPLVKR 132
            +   G  E  H +    +   T      R  AV  +L   G Q    +L D    L+ +
Sbjct: 499 CMLGTGKPEAIHDMFTYSQE--TQHGNITRGLAVGLALINYGRQ----ELAD---DLITK 549

Query: 133 LAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAA 192
           + A +    R        +AY    +     ++ +      D    VRR+A   LG    
Sbjct: 550 MLASDESLLRYGGAFTIALAYAGTGNNSA--VKRLLHVAVSDSNDDVRRAAVIALGFVLL 607

Query: 193 TVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD 252
                   T +  I + L++     VR        ALG     +  +   + V+   ++D
Sbjct: 608 RDY-----TTVPRIVQLLSKSHNAHVRCGT---AFALGIACAGKG-LQSAIDVLDPLTKD 658

Query: 253 KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL 311
               VR      L  +      E       P    + ++  + +       + KF   +
Sbjct: 659 PVDFVRQAAMIAL-SMILIQQTEKLN----PQVADINKNFLSVITNKHQEGLAKFGACV 712

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963

 Score = 44.4 bits (104), Expect = 1e-04
 Identities = 45/239 (18%), Positives = 75/239 (31%), Gaps = 25/239 (10%)

Query: 142 RVSAC-GLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLK 200
              A  G+   A  SA   +   L     ++  +D      +AA  +G            
Sbjct: 454 LHGASLGIGLAAMGSANIEVYEAL----KEVLYNDSATSGEAAALGMGLCMLGTGKPEAI 509

Query: 201 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYM 260
            D+ +  ++ TQ   +  R LAV    AL      +        +I          +RY 
Sbjct: 510 HDMFTYSQE-TQHG-NITRGLAV--GLALINYGRQELAD----DLITKMLASDESLLRYG 561

Query: 261 VANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 320
                + +  A         +       + D+  +VR AA      F  + +     +  
Sbjct: 562 ---GAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAV-IALGFVLLRDYTTVPRI- 616

Query: 321 LPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNII 379
              V+ LS   + HVR   A  +       G  + I+ L P    L KD    VR   +
Sbjct: 617 ---VQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDP----LTKDPVDFVRQAAM 668

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 21/183 (11%), Positives = 53/183 (28%), Gaps = 14/183 (7%)

Query: 139 FTARVSACGLFHIAYPSAPDILKTELRSIY---TQLCQDDMPMVRRSAASNLGKFAATVE 195
           F   ++A         ++P  L +    +    T    +  P                + 
Sbjct: 60  FKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIR 119

Query: 196 PAHLKTDIMSIFEDLTQ------DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNF 249
                     +   +        + +D++R    +    L  ++ P      + P++++ 
Sbjct: 120 DTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL----KMTPMLLDA 175

Query: 250 SQDKSWRVRYMVANQLYELCEAVGPEPTR-MDLVPAYVRLLRDNEAEVRIAAAGKVTKFC 308
            + K+ R R      +       G  P + + +       + D +  VR AA   +    
Sbjct: 176 LKSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235

Query: 309 RIL 311
           +  
Sbjct: 236 KFE 238

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 26/212 (12%), Positives = 77/212 (36%), Gaps = 17/212 (8%)

Query: 286 VRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS---SDSSQHVRSALASV 342
           +  L   + +  +AA   + +     +P   + +    +K  +    +++      +  +
Sbjct: 52  MSQLFHKDFKQHLAALDSLVRLADT-SPRSLLSNSDLLLKWCTLRFFETNPAALIKVLEL 110

Query: 343 IMGMAPLLGK------DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQ 396
              +  L+           +   +P  L    +   ++R ++   ++ ++ V+G   ++ 
Sbjct: 111 CKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTP 170

Query: 397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDD-KLGALCMQWLQDKVYSIRDA 455
            LL A+    + ++ R R   +  I    +  G+       +      ++ DK  ++R+A
Sbjct: 171 MLLDAL----KSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNA 226

Query: 456 AANNLKRLAEEFGPEWA--MQHITPQVLEMIN 485
           A N L    +  G +       +  +   ++ 
Sbjct: 227 AINVLVACFKFEGDQMWKAAGRMADKDKSLVE 258

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Length = 507

 Score = 44.9 bits (105), Expect = 6e-05
 Identities = 33/268 (12%), Positives = 85/268 (31%), Gaps = 29/268 (10%)

Query: 280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSAL 339
             + A + L  D +  +R  A  ++ +F      E   +      + L +D S       
Sbjct: 65  SAINAQLDLCEDEDVSIRRQAIKELPQFAT---GENLPRVADILTQLLQTDDSAE----F 117

Query: 340 ASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 399
             V   +  +   DA  +  L    S +      VR   I  L    + +  ++L++ + 
Sbjct: 118 NLVNNALLSIFKMDA--KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVE 175

Query: 400 PAIVELAED-------RHWRVRLAIIEYIPLLASQLGVGFFDD---KLGALCMQWLQDKV 449
             I+  ++          + + + I+  +  L +  G     +   +   L   +     
Sbjct: 176 ELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDP 235

Query: 450 YSIRDAAANNLKRLAEEFGPEWA--------MQHITPQVLEMINNPHYL-YRMTILRAIS 500
             + D      ++    F              + + P +  +      L  ++ +L+ ++
Sbjct: 236 DCV-DRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLA 294

Query: 501 LLAPVMGSEITCSRLLPVVINASKDRVP 528
            ++   G        L  + +   + +P
Sbjct: 295 EMSSFCGDMEKLETNLRKLFDKLLEYMP 322

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 44.5 bits (105), Expect = 9e-05
 Identities = 66/518 (12%), Positives = 144/518 (27%), Gaps = 72/518 (13%)

Query: 88  LPPLETLCTVEETCVRDKAVESLCRIGSQ-------MRESDLVDWYIPLVKRLAAGEWFT 140
           +P L  L   E+  V +KA   + ++  +       MR   +V     +V+ +       
Sbjct: 16  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVS---AIVRTMQNTNDVE 72

Query: 141 ARVSACG-LFHIAYPSAPDILKTELRSIYT--QLCQDDMPMVRRSAA---SNLGKFAATV 194
                 G L ++++     +   +   I    ++    +  V   A     NL       
Sbjct: 73  TARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA 132

Query: 195 EPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL-LEPQDCVAHI-----LPVIVN 248
           + A      +     L          +       L  L    Q+    I        +VN
Sbjct: 133 KMAVRLAGGLQKMVALLNKTNVKFLAIT---TDCLQILAYGNQESKLIILASGGPQALVN 189

Query: 249 FSQDKSWR-VRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLRDNEAEVRIAAAGKVT 305
             +  ++  + +  +  L  L      +P       + A    L D    +       + 
Sbjct: 190 IMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 249

Query: 306 KFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMA-------PLLGKDATIEQ 358
                   +  ++ +L  + +L      +V +  A ++  +         ++ +   IE 
Sbjct: 250 NLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA 309

Query: 359 LLPIFLSLLKDEFPDVR------LNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 412
           L+     L   +  D+       L  ++   Q  ++    +     LP +V+L       
Sbjct: 310 LVR--TVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 367

Query: 413 VRL------------------AIIEY--IPLLASQLGVGFFDDKLGA-----LCMQWLQD 447
             +                   + E   IP L   L     D +                
Sbjct: 368 PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 427

Query: 448 KVYSIRDAAANNLKRLAEEFGPEWAM--QHITPQVLEMINNPHYLYRMTILRAISLLA-- 503
           ++  I +     L  LA +      +   +  P  ++++ +P    +      +  LA  
Sbjct: 428 RMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 487

Query: 504 PVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSL 541
                 I        +      R   +    A VL  +
Sbjct: 488 KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 525

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Length = 240

 Score = 43.0 bits (100), Expect = 1e-04
 Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 4/106 (3%)

Query: 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVR 219
            K  L  +  ++ +D+   V+   A    +F   +E        + I ++  +      R
Sbjct: 101 DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK----ALPIIDEWLKSSNLHTR 156

Query: 220 LLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQL 265
             A EG          ++     +  I +  +D S  VR  V N L
Sbjct: 157 RAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNAL 202

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 43.7 bits (102), Expect = 2e-04
 Identities = 44/263 (16%), Positives = 81/263 (30%), Gaps = 28/263 (10%)

Query: 170 QLCQDDMPMVRRSAASNLGKFAATVEPAHLKTD------IMSIFEDLTQDDQDSVR---L 220
           ++  +     +R A   L +   T+ P    +       I  +   L QD         L
Sbjct: 543 RMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESL 602

Query: 221 LAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELC---EAVGPEPT 277
           +A+   A++ + +  +      +  I  +  +    +    A  L  L    + +     
Sbjct: 603 MALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEG 662

Query: 278 RMDLVPAYVRLLRDNEAEVRIAAAG-------KVTKFCRILNPELAIQHILPCVKELSSD 330
             D V     L  D + E   A AG          K C  +   LAI   L  +  L ++
Sbjct: 663 NNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKI---LAIASWLDILHTLIAN 719

Query: 331 SSQHVRSALASVIMGMAPLLGK------DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 384
            S  V+     +I+ M     +      +  I +LL     L  D     R      L  
Sbjct: 720 PSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAA 779

Query: 385 VNQVIGIDLLSQSLLPAIVELAE 407
             +   I+    + +P +     
Sbjct: 780 AERYRIIERSDNAEIPDVFAENS 802

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 42.1 bits (98), Expect = 5e-04
 Identities = 57/440 (12%), Positives = 136/440 (30%), Gaps = 44/440 (10%)

Query: 14  LIDELKNDDIQLRLNSIRRLSTIARALGEERT----RKELIPFLSENNDDDDEVLLAMAE 69
           + D+L   D++ ++     ++ +     +       R+ ++  +      DDE+   +A 
Sbjct: 252 IKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVAC 311

Query: 70  ELGVFIPYVGGVEHAHV--LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWY- 126
           E  +          A     +  L+ L   +   +R +A+  LC++GS   +   +  + 
Sbjct: 312 ECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFG 371

Query: 127 -------IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYT------QLCQ 173
                      +R          +       +AY +     K +L            L +
Sbjct: 372 DGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLAR 431

Query: 174 DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL 233
                      +         E   +  +++ + +   Q   +   L  V+       +L
Sbjct: 432 GGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVL 491

Query: 234 EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLV-----PAYVRL 288
                   I   +   ++ +S   + ++A  L  +C     +  R  +V      A +R+
Sbjct: 492 ----ANEGITTALCALAKTESHNSQELIARVLNAVCGL---KELRGKVVQEGGVKALLRM 544

Query: 289 LRDNEAEVRIAAAGKVTKFCRILNPELAIQH------ILPCVKELSSDSSQHVRSALASV 342
             +   + +  A   + +    +NPE++         I P +  L  D +          
Sbjct: 545 ALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMA 604

Query: 343 IMGMA---PLLGKDATIEQLLPIFLSLLKDEFPDVRLN---IISKLDQVNQVIGIDLLSQ 396
           +  +A     + +    EQ +      L ++   +       +  L     VI +   + 
Sbjct: 605 LTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNN 664

Query: 397 SLLPAIVELAEDRHWRVRLA 416
             +  +  L ED       A
Sbjct: 665 DRVKFLALLCEDEDEETATA 684

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 42.7 bits (100), Expect = 3e-04
 Identities = 47/367 (12%), Positives = 99/367 (26%), Gaps = 46/367 (12%)

Query: 100 TCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACG-LFHIAYPSAPD 158
              R             +  + L+      V  L   +    +  +   L +IA  ++  
Sbjct: 79  QAARKLLSREKQPPIDNIIRAGLIP---KFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 135

Query: 159 ---ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMS---------- 205
              ++       +  L       +   A   LG  A   + +  +  ++           
Sbjct: 136 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIA--GDGSAFRDLVIKHGAIDPLLAL 193

Query: 206 IFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVA 262
           +                    + L +   P    D V  ILP +V         V     
Sbjct: 194 LAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSC 253

Query: 263 NQLYELCEAVGPEPTRM----DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---EL 315
             +  L +    E   M     +VP  V+LL   E  +   A   +       +    ++
Sbjct: 254 WAISYLTD-GPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKV 312

Query: 316 AIQHILPCVKELSSDSSQHVRSALASVIMGMA---PLLGKDATIEQLLPIFLSLLKDEFP 372
                L     L ++   +++      +  +        +      L+P  + +L     
Sbjct: 313 IDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADF 372

Query: 373 DVRL-------NIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVR---LAIIEYIP 422
             +        N  S       V    L+   ++  ++ L   +  ++    L  I  I 
Sbjct: 373 KTQKEAAWAITNYTSGGTVEQIVY---LVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF 429

Query: 423 LLASQLG 429
             A +LG
Sbjct: 430 QAAEKLG 436

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 41.5 bits (97), Expect = 5e-04
 Identities = 19/158 (12%), Positives = 46/158 (29%), Gaps = 12/158 (7%)

Query: 281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-----LAIQHILPCVKELSSDSSQHV 335
           +     R L    A +R  AA  +    +          L +  +   ++ L  D+   V
Sbjct: 83  MHLLVGRYLEAGAAGLRWRAAQLIGTCSQN-VAAIQEQVLGLGALRKLLRLLDRDACDTV 141

Query: 336 RSALASVIMGMA---PLLGKDATIEQLLPIFLSLLKDEFPDVR---LNIISKLDQVNQVI 389
           R      I  +                  + +  ++ +   ++     ++  L   +   
Sbjct: 142 RVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEH 201

Query: 390 GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 427
              L S  ++  +V L    H      ++  +  L + 
Sbjct: 202 KGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	626
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	100.0
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	100.0
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	100.0
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	100.0
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	100.0
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	100.0
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	100.0
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	100.0
1qgr_A	876	Protein (importin beta subunit); transport recepto	100.0
1qgr_A	876	Protein (importin beta subunit); transport recepto	100.0
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.94
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.92
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.92
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.92
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.91
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.91
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.9
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.9
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.9
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.9
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.89
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.89
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.89
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.89
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.89
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.87
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.87
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.87
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.86
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.86
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.8
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.78
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.78
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.77
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.77
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.77
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.74
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.74
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	99.73
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	99.73
2x1g_F	971	Cadmus; transport protein, developmental protein,	99.67
2x1g_F	971	Cadmus; transport protein, developmental protein,	99.66
2x19_B	963	Importin-13; nuclear transport, protein transport;	99.66
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	99.65
2x19_B	963	Importin-13; nuclear transport, protein transport;	99.65
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.64
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.64
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.63
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.63
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	99.61
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	99.6
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	99.53
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.53
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	99.53
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	99.53
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.53
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.52
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.52
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.51
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.51
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	99.5
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.49
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	99.48
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.48
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.47
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.47
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.47
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.46
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	99.44
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.43
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.36
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	99.35
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.31
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.29
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	99.29
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	99.28
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	99.27
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.25
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.2
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.19
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	99.06
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	99.04
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.03
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.02
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.02
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.02
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	99.02
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	99.01
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	99.0
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	98.99
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	98.97
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	98.95
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.92
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	98.9
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.87
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	98.87
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	98.86
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.85
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	98.84
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	98.8
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.71
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	98.66
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.65
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	98.33
3grl_A	651	General vesicular transport factor P115; vesicle t	98.15
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.0
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	97.98
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	97.95
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	97.9
3grl_A	651	General vesicular transport factor P115; vesicle t	97.84
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	97.81
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	97.79
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	97.05
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	96.85
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	96.76
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	96.73
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	96.57
4atg_A	196	TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton	96.09
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	96.06
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	96.01
4atg_A	196	TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton	94.11
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	89.61
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	88.97
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	88.81
2b6c_A	220	Hypothetical protein EF3068; structural genomis, D	88.17
2b6c_A	220	Hypothetical protein EF3068; structural genomis, D	87.52
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	87.22
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	86.33
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	85.68
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	85.46
3jxy_A	232	Alkylpurine DNA glycosylase ALKD; heat repeat, DNA	84.68
3jxy_A	232	Alkylpurine DNA glycosylase ALKD; heat repeat, DNA	84.49
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	82.36
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	82.03
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	81.37
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	80.71

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=100.00  E-value=3.1e-61  Score=517.25  Aligned_cols=579  Identities=58%  Similarity=0.929  Sum_probs=541.3

Q ss_pred             CCCCCcccHHHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhccccccccCCchHHHHHHHHHHhccccccCCcc
Q 006898            3 MVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVE   82 (626)
Q Consensus         3 ~~~~~~~~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~   82 (626)
                      .+|++.++|..|++.++|+|+..|..|.+.+.+++..+|++...++++|+|.+..+++++||..+++.++.+...++++.
T Consensus         4 ~~~~~~~~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~~~~~~   83 (588)
T 1b3u_A            4 DGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPE   83 (588)
T ss_dssp             CTTTSSHHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSGG
T ss_pred             ccCCCcCcHHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCcHH
Confidence            45899999999999999999999999999999999999998889999999998778899999999999999998888788


Q ss_pred             hhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHH
Q 006898           83 HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKT  162 (626)
Q Consensus        83 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~  162 (626)
                      +.+.+++.+..+.+++++.||..|..++..++..++++...+.++|++..+.+++++..|..++.+++.++.+.+....+
T Consensus        84 ~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~  163 (588)
T 1b3u_A           84 YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKA  163 (588)
T ss_dssp             GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHH
T ss_pred             HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHH
Confidence            88999999999998999999999999999999999998888889999999999999999999999999999999988889


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhh
Q 006898          163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHI  242 (626)
Q Consensus       163 ~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i  242 (626)
                      .+++.+..+++|+++.||..++++++.++...+++.+.+.++|.+..+++|+++.||..|+.+++.+++..+++...+.+
T Consensus       164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  243 (588)
T 1b3u_A          164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALV  243 (588)
T ss_dssp             HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHT
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999998887777889999999999999999999999999999998887778889


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChH----HHHH
Q 006898          243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQ  318 (626)
Q Consensus       243 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~  318 (626)
                      +|.+..+++|++|.||..++.+++.++...|.+.....++|.+..+++|++++||..++.+++.+++.++.+    .+.+
T Consensus       244 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~  323 (588)
T 1b3u_A          244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS  323 (588)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHH
T ss_pred             HHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHH
Confidence            999999999999999999999999999988766556789999999999999999999999999999988765    4568


Q ss_pred             hhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhH
Q 006898          319 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL  398 (626)
Q Consensus       319 ~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i  398 (626)
                      .++|.+..+++|++|.||.+++.+++.++..+|.+...+.++|.+..+++|++++||..++.+++.+...++.+...+.+
T Consensus       324 ~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~  403 (588)
T 1b3u_A          324 QILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSL  403 (588)
T ss_dssp             THHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            89999999999999999999999999999999988777889999999999999999999999999999998887777789


Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHH
Q 006898          399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITP  478 (626)
Q Consensus       399 ~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~  478 (626)
                      +|.+.++.+|++|++|..++.+++.++..+|...+.+.++|.+...+.|++..||..|+.+++.++..+|+++....++|
T Consensus       404 lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp  483 (588)
T 1b3u_A          404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIP  483 (588)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHH
T ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHH
Confidence            99999999999999999999999999999998877788999999999999999999999999999999998877789999


Q ss_pred             HHHhhhcCCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccchhhhcccchH
Q 006898          479 QVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFS  558 (626)
Q Consensus       479 ~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l  558 (626)
                      .+.++..++++.+|..++.+++.+++.++.+.+.+.++|.+...++|++++||..++++|+.+...+|.....+.+.|.+
T Consensus       484 ~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l  563 (588)
T 1b3u_A          484 KVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPIL  563 (588)
T ss_dssp             HHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHH
T ss_pred             HHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhHHHHHHHH
Confidence            99999999999999999999999999988888889999999999999999999999999999999988876667899999


Q ss_pred             HhhhccCCCcccccccccCchhHHHHHHHHHHH
Q 006898          559 FMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCH  591 (626)
Q Consensus       559 ~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~  591 (626)
                      . .+.+|+|++||.         +|..|++.+.
T Consensus       564 ~-~l~~d~d~~vr~---------~a~~al~~l~  586 (588)
T 1b3u_A          564 E-KLTQDQDVDVKY---------FAQEALTVLS  586 (588)
T ss_dssp             H-HHTTCSSHHHHH---------HHHHHHHHTT
T ss_pred             H-HHcCCCchhHHH---------HHHHHHHHhh
Confidence            9 899999999999         9999998764

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=100.00  E-value=2.9e-46  Score=400.86  Aligned_cols=523  Identities=18%  Similarity=0.251  Sum_probs=473.4

Q ss_pred             cCccHHHHHHHHhhHHHHHHhhChHhhhhhhcccccc-ccCCchHHHHHHHHHHhccccccCCcchhhcchHHHhhhhcC
Q 006898           19 KNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTV   97 (626)
Q Consensus        19 ~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~   97 (626)
                      .+++..+|..+.+.|+.+....|.......++|.+.. ..++++.||..+..+++.+....+.+...+.++|.+..+..+
T Consensus        58 ~d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~  137 (588)
T 1b3u_A           58 IYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGG  137 (588)
T ss_dssp             CCCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTC
T ss_pred             cCCcHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcC
Confidence            3778899999999999887777665556778888877 467899999999999999988776555667889999999888


Q ss_pred             cchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChH-HHHHHHHHHHHhcCCCC
Q 006898           98 EETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQDDM  176 (626)
Q Consensus        98 ~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~-~~~~l~~~l~~l~~d~~  176 (626)
                      +++.+|..|+..++.+....+.. ..+.++|.+..+++|+++.+|..++..++.+....+.+ ..+.++|.+..+++|++
T Consensus       138 ~~~~~R~~a~~~l~~~~~~~~~~-~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~  216 (588)
T 1b3u_A          138 DWFTSRTSACGLFSVCYPRVSSA-VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQ  216 (588)
T ss_dssp             SSHHHHHHHGGGHHHHTTTSCHH-HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSC
T ss_pred             CCcHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCc
Confidence            89999999999999999887754 45678999999999999999999999999999888764 56789999999999999


Q ss_pred             HHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHH
Q 006898          177 PMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWR  256 (626)
Q Consensus       177 ~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~  256 (626)
                      +.||..++.+++.++...+++...+.++|.+..+++|++|.+|..++.+++.++...+++.+.+.++|.+..+++|+++.
T Consensus       217 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~  296 (588)
T 1b3u_A          217 DSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAE  296 (588)
T ss_dssp             HHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHH
Confidence            99999999999999998887777788999999999999999999999999999998887767788999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCC----ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCC
Q 006898          257 VRYMVANQLYELCEAVGPE----PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS  332 (626)
Q Consensus       257 vR~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~  332 (626)
                      ||..++.+++.++...+.+    .....++|.+..+++|+++.||..++.+++.++..+|.+...+.++|.+..+++|++
T Consensus       297 vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~  376 (588)
T 1b3u_A          297 VRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDEC  376 (588)
T ss_dssp             HHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSC
T ss_pred             HHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCc
Confidence            9999999999999988866    345689999999999999999999999999999999987766889999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChH
Q 006898          333 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR  412 (626)
Q Consensus       333 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~  412 (626)
                      +.||.+++.+++.+...++.+...+.++|.+..+++|+++.+|..++.+++.+...+|.+.+.+.++|.+.+.++|+++.
T Consensus       377 ~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~  456 (588)
T 1b3u_A          377 PEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYA  456 (588)
T ss_dssp             HHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHH
T ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHH
Confidence            99999999999999988887777788999999999999999999999999999999988776678999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHH
Q 006898          413 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYR  492 (626)
Q Consensus       413 ~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR  492 (626)
                      +|..++.+++.++..+|...+.+.++|.+..+..|+++.+|..++.+++.++..+|.+.+...++|.+.+.++|+++.+|
T Consensus       457 Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr  536 (588)
T 1b3u_A          457 IREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVR  536 (588)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHH
T ss_pred             HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHH
Confidence            99999999999999999887778899999999999999999999999999999988877778999999999999999999


Q ss_pred             HHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHH
Q 006898          493 MTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI  542 (626)
Q Consensus       493 ~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~  542 (626)
                      ..++.+++.+...++.....+.++|.+..+.+|++++||..|+.+++.+.
T Consensus       537 ~~a~~~l~~l~~~~~~~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~  586 (588)
T 1b3u_A          537 FNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence            99999999999999988777889999999999999999999999998764

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=100.00  E-value=6.3e-35  Score=325.16  Aligned_cols=567  Identities=18%  Similarity=0.138  Sum_probs=444.6

Q ss_pred             HHhcCccHHHHHHHHhhHHHHHHh----hChHhhhhhhcccccc-ccCCchHHHHHHHHHHhccccccCCcchhhcchHH
Q 006898           16 DELKNDDIQLRLNSIRRLSTIARA----LGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP   90 (626)
Q Consensus        16 ~~l~s~d~~~r~~a~~~l~~i~~~----~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~   90 (626)
                      ..+.+.+..+|..|...|.+....    +++ ..+..+.+.+.+ +.++++.||..++.+++.++... .+..|+.+++.
T Consensus        55 ~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~-~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~-~~~~wp~ll~~  132 (852)
T 4fdd_A           55 TKLKSEDEPTRSLSGLILKNNVKAHFQNFPN-GVTDFIKSECLNNIGDSSPLIRATVGILITTIASKG-ELQNWPDLLPK  132 (852)
T ss_dssp             HTCTTSCHHHHHHHHHHHHHHTTTSGGGCCH-HHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHT-TTTTCTTHHHH
T ss_pred             hccCCCChHHHHHHHHHHHHHHHHccCCCCH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhc-CccccHHHHHH
Confidence            333566677777777666655321    222 223344444444 45788899999999999998764 35678999999


Q ss_pred             HhhhhcCcchHHHHHHHHHHHHHHhhcChhhH-------HHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChH---H
Q 006898           91 LETLCTVEETCVRDKAVESLCRIGSQMRESDL-------VDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---L  160 (626)
Q Consensus        91 l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~-------~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~---~  160 (626)
                      +...++++++.+|+.+..++..+++..++...       ...++|.+.+++++++..+|..|+..+..+....+..   .
T Consensus       133 L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~  212 (852)
T 4fdd_A          133 LCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLH  212 (852)
T ss_dssp             HHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTS
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            99999999999999999999999998876421       3457788888888889999999999999888766543   3


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc--cchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc---
Q 006898          161 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP---  235 (626)
Q Consensus       161 ~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---  235 (626)
                      ...+++.+...++|+++.||+.++.+|+.+++..+.  ..+.+.+++.+...++|.++.||..|++.+..+++....   
T Consensus       213 ~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~  292 (852)
T 4fdd_A          213 IDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDV  292 (852)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHH
Confidence            467888888999999999999999999999987654  234556889999999999999999999999998864221   


Q ss_pred             -hhhhhhhHHHHHHhc-----------CC-----------CCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCC
Q 006898          236 -QDCVAHILPVIVNFS-----------QD-----------KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDN  292 (626)
Q Consensus       236 -~~~~~~i~~~l~~~~-----------~d-----------~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~  292 (626)
                       ..+...++|.+...+           .|           .+|.+|.+++.+++.++...|.. ....++|.+...++++
T Consensus       293 ~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~-~~~~l~~~l~~~l~~~  371 (852)
T 4fdd_A          293 LVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE-LLPHILPLLKELLFHH  371 (852)
T ss_dssp             HTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHhcCC
Confidence             224456777776654           34           56889999999999999998843 3457889999999999


Q ss_pred             hHHHHHHHHHhHHHHHHhhChH--HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcH---HHHHHhHHHHHHHhh
Q 006898          293 EAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLL  367 (626)
Q Consensus       293 ~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l  367 (626)
                      ++.+|.+|+.+++.+++..+..  .+.+.++|.+..+++|+++.||.+++.+++.++...+.   ..+...+++.+...+
T Consensus       372 ~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L  451 (852)
T 4fdd_A          372 EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRI  451 (852)
T ss_dssp             SHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            9999999999999998765432  34577889999999999999999999999999987653   335667889999999


Q ss_pred             cCCCHHHHHHHHHhhHHHHhhhchhh--HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhh----HHHHHHHHH
Q 006898          368 KDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF----FDDKLGALC  441 (626)
Q Consensus       368 ~d~~~~vr~~a~~~L~~~~~~~~~~~--~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~----~~~~l~p~l  441 (626)
                      .|.++.||..|+.+++.+++..+.+.  +...+++.+...+++.+......++++++.++...|+..    +.+.++|.+
T Consensus       452 ~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l  531 (852)
T 4fdd_A          452 LDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPL  531 (852)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHH
Confidence            99999999999999999998776542  346788888888887777777778899999988766443    566788887


Q ss_pred             HH---HhcCCchHHHHHHHHHHHHHHHHhChHHH--hhhhHHHHHhhh-----------------cCCChHHHHHHHHHH
Q 006898          442 MQ---WLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMI-----------------NNPHYLYRMTILRAI  499 (626)
Q Consensus       442 ~~---~l~d~~~~VR~~a~~~l~~l~~~~~~~~~--~~~il~~l~~~l-----------------~~~~~~vR~~a~~~l  499 (626)
                      ..   .+.|.+..+| .+.++++.++..+|....  ...+++.+.+.+                 ..++..+|..++.++
T Consensus       532 ~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l  610 (852)
T 4fdd_A          532 IQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLL  610 (852)
T ss_dssp             HHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHH
T ss_pred             HHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHH
Confidence            74   5677788886 789999999999887532  244444433332                 123677999999999


Q ss_pred             HHhccccChHH--h--hhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc--hhhhcccchHHhhhccCCCcccccc
Q 006898          500 SLLAPVMGSEI--T--CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VSTFSVSPFSFMLYLNVNNFNVGFI  573 (626)
Q Consensus       500 ~~i~~~~~~~~--~--~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~~l~~d~d~~vr~~  573 (626)
                      +.+++.++.+.  +  .+.+++.+..++.|+++.||..+..+++.+...++..  .+.+.++|.+. +.+++.+..+|. 
T Consensus       611 ~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~-~~l~~~~~~v~~-  688 (852)
T 4fdd_A          611 SGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILG-TNLNPEFISVCN-  688 (852)
T ss_dssp             HHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHH-HTCCTTSHHHHH-
T ss_pred             HHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHcCccchHHHH-
Confidence            99999887553  2  2678999999999999999999999999999888764  45567888888 778888889999 


Q ss_pred             cccCchhHHHHHHHHHHHHHhhc
Q 006898          574 FAAFPLVLFSCLALNYCHRWWRK  596 (626)
Q Consensus       574 ~~~~~~~~~a~~al~~~~~~~~~  596 (626)
                              .|.++++.+....+.
T Consensus       689 --------~a~~alg~i~~~~~~  703 (852)
T 4fdd_A          689 --------NATWAIGEISIQMGI  703 (852)
T ss_dssp             --------HHHHHHHHHHHHHGG
T ss_pred             --------HHHHHHHHHHHHhhH
Confidence                    999999988766554

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=100.00  E-value=2.9e-34  Score=319.80  Aligned_cols=571  Identities=16%  Similarity=0.112  Sum_probs=445.2

Q ss_pred             cHHHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhh-------hhhhcccccc-ccCCchHHHHHHHHHHhccccccCCc
Q 006898           10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERT-------RKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGV   81 (626)
Q Consensus        10 ~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~-------~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~   81 (626)
                      -++.|++.+.++++..|..++.++..+....++...       .+.++|.+.+ +.+++++||..+..+++.++...+..
T Consensus       129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~  208 (852)
T 4fdd_A          129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQA  208 (852)
T ss_dssp             HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHH
Confidence            467888899999999999999999999887765422       3456777766 56789999999999999887643321


Q ss_pred             --chhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChh--hHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCC
Q 006898           82 --EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES--DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP  157 (626)
Q Consensus        82 --~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~--~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~  157 (626)
                        ...+.+++.+..+.+|+++.+|..|+.++..+++..+..  ...+.+++.+.....++++.+|..++..+..+++...
T Consensus       209 ~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~  288 (852)
T 4fdd_A          209 LMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPI  288 (852)
T ss_dssp             HHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTT
T ss_pred             HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchh
Confidence              234567777777888999999999999999999876542  1223477888888888888999999999988876532


Q ss_pred             -----hHHHHHHHHHHHHhc-----------CC-----------CCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHh
Q 006898          158 -----DILKTELRSIYTQLC-----------QD-----------DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDL  210 (626)
Q Consensus       158 -----~~~~~~l~~~l~~l~-----------~d-----------~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l  210 (626)
                           ..+...+++.+...+           +|           .+|.+|+.++.+++.++...++ ...+.++|.+...
T Consensus       289 ~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~-~~~~~l~~~l~~~  367 (852)
T 4fdd_A          289 CKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD-ELLPHILPLLKEL  367 (852)
T ss_dssp             HHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence                 124567788887765           34           5678999999999999998874 5667899999999


Q ss_pred             hcCCchhHHHHHHHHHHHhhcccCc--hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC---ccccchHHHH
Q 006898          211 TQDDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRMDLVPAY  285 (626)
Q Consensus       211 ~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l  285 (626)
                      ++|++|.+|..|+.+++.+++..++  ..+.+.++|.+...++|+++.||..++.+++.++...+..   .....+++.+
T Consensus       368 l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L  447 (852)
T 4fdd_A          368 LFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTEL  447 (852)
T ss_dssp             HTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence            9999999999999999999987765  3466788999999999999999999999999999876532   3345788999


Q ss_pred             HHhcCCChHHHHHHHHHhHHHHHHhhChH--HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcH----HHHHHhH
Q 006898          286 VRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK----DATIEQL  359 (626)
Q Consensus       286 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~----~~~~~~l  359 (626)
                      ...++|.++.||..|+.+++.+++..+..  .+.+.+++.+...+++.+......++++++.++...|.    ..+.+.+
T Consensus       448 ~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l  527 (852)
T 4fdd_A          448 LKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQML  527 (852)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHH
Confidence            99999999999999999999999877654  34577778777777766777777778888888766553    3467788


Q ss_pred             HHHHH---HhhcCCCHHHHHHHHHhhHHHHhhhchhhH--HhhHHHHHHHHhc-----------------CCChHHHHHH
Q 006898          360 LPIFL---SLLKDEFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAE-----------------DRHWRVRLAI  417 (626)
Q Consensus       360 ~~~l~---~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~--~~~i~~~l~~~~~-----------------~~~~~~r~~~  417 (626)
                      +|.+.   ..+.|.++.++ .++++++.++..+|....  ...+++.+.+.++                 .++..+|..+
T Consensus       528 ~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~  606 (852)
T 4fdd_A          528 MPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVA  606 (852)
T ss_dssp             HHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHH
T ss_pred             HHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHH
Confidence            88887   45677778886 789999999998887532  2444554433321                 2356789999


Q ss_pred             HHHHHHHHHhhChhhHH----HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhhcCCChHH
Q 006898          418 IEYIPLLASQLGVGFFD----DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPHYLY  491 (626)
Q Consensus       418 ~~~l~~l~~~~~~~~~~----~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~~~~~~v  491 (626)
                      +..++.+++.+|.....    +.+++.+..++.|+.+.||+.+..+++.++..++...  ....++|.+.+.++++++.+
T Consensus       607 l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v  686 (852)
T 4fdd_A          607 LDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISV  686 (852)
T ss_dssp             HHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHH
T ss_pred             HHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHH
Confidence            99999999999865421    4579999999999999999999999999999887653  23678999999898889999


Q ss_pred             HHHHHHHHHHhccccChH--HhhhcHHHHHhhhCCCCC--chHHHHHHHHHHHHHhhhccc--hhhhcccchHHhhhc-c
Q 006898          492 RMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRV--PNIKFNVAKVLQSLIPIVDQS--VSTFSVSPFSFMLYL-N  564 (626)
Q Consensus       492 R~~a~~~l~~i~~~~~~~--~~~~~~l~~l~~~l~d~~--~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~~l~-~  564 (626)
                      |..+++++|.++...+.+  .+...+++.|...+++++  ..++.+++.++|++....+..  ++.+.+++.+. +.+ .
T Consensus       687 ~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~-~~l~~  765 (852)
T 4fdd_A          687 CNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWC-TSLRN  765 (852)
T ss_dssp             HHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHH-HHHHT
T ss_pred             HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHH-HHhcc
Confidence            999999999999887653  467789999999888764  479999999999999885442  44556666666 444 3


Q ss_pred             CCCcccccccccCchhHHHHHHHHHHHH
Q 006898          565 VNNFNVGFIFAAFPLVLFSCLALNYCHR  592 (626)
Q Consensus       565 d~d~~vr~~~~~~~~~~~a~~al~~~~~  592 (626)
                      -.|.+-|.         .|..++..+-.
T Consensus       766 ~~d~~e~~---------~a~~~l~~li~  784 (852)
T 4fdd_A          766 IRDNEEKD---------SAFRGICTMIS  784 (852)
T ss_dssp             SCSSHHHH---------HHHHHHHHHHH
T ss_pred             ccccHHHH---------HHHHHHHHHHH
Confidence            35555566         55555555533

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=100.00  E-value=1.1e-34  Score=335.79  Aligned_cols=570  Identities=13%  Similarity=0.165  Sum_probs=447.4

Q ss_pred             cHHHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhcccccc-ccCCchHHHHHHHHHHhccccccCCc-------
Q 006898           10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGV-------   81 (626)
Q Consensus        10 ~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~-------   81 (626)
                      -+..+++.+.++++.+|..|..+++.++...++ ...+.+++.+.. +.++++.+|.+++.+++.++..++..       
T Consensus        49 il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~  127 (1230)
T 1u6g_C           49 VVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALA  127 (1230)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchH
Confidence            356788889999999999999999999888775 456778887777 67888999999999999998876643       


Q ss_pred             -chhhcchHHHhhhhc-CcchHHHHHHHHHHHHHHhhcChh--hHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCC
Q 006898           82 -EHAHVLLPPLETLCT-VEETCVRDKAVESLCRIGSQMRES--DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP  157 (626)
Q Consensus        82 -~~~~~l~~~l~~l~~-~~~~~vR~~a~~~l~~i~~~~~~~--~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~  157 (626)
                       .+++.++|.+...+. ++++.+|..|+.++..+++..++.  ...+.+++.+...+.+++..+|..++.+++.++...+
T Consensus       128 ~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~  207 (1230)
T 1u6g_C          128 ANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCG  207 (1230)
T ss_dssp             HHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-
T ss_pred             HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcC
Confidence             268899999888887 478899999999999998765541  1235577777777788888999999999999998887


Q ss_pred             hHHHHHHHHHHHHhcCC-CCHHHHHHHHHhHHHHHHhhCcc--chhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccC
Q 006898          158 DILKTELRSIYTQLCQD-DMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE  234 (626)
Q Consensus       158 ~~~~~~l~~~l~~l~~d-~~~~vR~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~  234 (626)
                      +...+.+++.+...+.+ .++.+|..++++++.++...+..  .+.+.++|.+...++|+++++|..++.+++.+++.++
T Consensus       208 ~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~  287 (1230)
T 1u6g_C          208 NIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCP  287 (1230)
T ss_dssp             ---CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHCh
Confidence            65555556666554433 33578999999999999987752  3456799999999999999999999999999999887


Q ss_pred             ch--hhhhhhHHHHHHhcC-------------------------------------CCCHHHHHHHHHHHHHHHHHhCC-
Q 006898          235 PQ--DCVAHILPVIVNFSQ-------------------------------------DKSWRVRYMVANQLYELCEAVGP-  274 (626)
Q Consensus       235 ~~--~~~~~i~~~l~~~~~-------------------------------------d~~~~vR~~a~~~l~~l~~~~~~-  274 (626)
                      .+  .+.+.++|.+...+.                                     |..|.+|.+++.+++.++...+. 
T Consensus       288 ~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~  367 (1230)
T 1u6g_C          288 KEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEM  367 (1230)
T ss_dssp             CCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhH
Confidence            63  466777777654331                                     23578999999999999886553 


Q ss_pred             -CccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCh---------------------HHHHHhhHHHHHHhccCCC
Q 006898          275 -EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---------------------ELAIQHILPCVKELSSDSS  332 (626)
Q Consensus       275 -~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---------------------~~~~~~l~~~l~~l~~d~~  332 (626)
                       ..+...++|.+...+.|.+++||..++.++..+....+.                     ..+.+.++|.+.+.++|++
T Consensus       368 ~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~  447 (1230)
T 1u6g_C          368 LPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKS  447 (1230)
T ss_dssp             HHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSC
T ss_pred             HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCC
Confidence             233457889888889999999999999999998876542                     2234567777777799999


Q ss_pred             HHHHHHHHHHHHhhhhhhcH--HHHHHhHHHHHHHhhcCCCH--HHHHHHHHhhHHHHhhhchhh---HHhhHHHHHHHH
Q 006898          333 QHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFP--DVRLNIISKLDQVNQVIGIDL---LSQSLLPAIVEL  405 (626)
Q Consensus       333 ~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~--~vr~~a~~~L~~~~~~~~~~~---~~~~i~~~l~~~  405 (626)
                      |.+|.+++.+++.+....+.  ..+.+.++|.+...++|+.+  .+|..++..+..+....+++.   +.+.++|.+.+.
T Consensus       448 ~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~  527 (1230)
T 1u6g_C          448 VKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVAC  527 (1230)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHH
Confidence            99999999999998876543  23567899999999999864  999999999999988777663   446789999999


Q ss_pred             hcCCChHHHHHHHHHHHHHHHhhCh---------hhHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHHhChHHH--
Q 006898          406 AEDRHWRVRLAIIEYIPLLASQLGV---------GFFDDKLGALCMQWL--QDKVYSIRDAAANNLKRLAEEFGPEWA--  472 (626)
Q Consensus       406 ~~~~~~~~r~~~~~~l~~l~~~~~~---------~~~~~~l~p~l~~~l--~d~~~~VR~~a~~~l~~l~~~~~~~~~--  472 (626)
                      ++|++|++|..++..+..+++.++.         ..+.+.++|.+...+  .|.+..||..|..+++.++...|..+.  
T Consensus       528 l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~  607 (1230)
T 1u6g_C          528 VGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSD  607 (1230)
T ss_dssp             HTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTH
T ss_pred             HcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhh
Confidence            9999999999999999999988876         245678999999988  888999999999999999999887632  


Q ss_pred             hhhhHHHHHhhhcCCChHHHHHHHHHHHHhcccc---ChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccch
Q 006898          473 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVM---GSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV  549 (626)
Q Consensus       473 ~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~---~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~  549 (626)
                      ...+++.+.+.+.+  ...|..++.+++.++...   +...+...++|.+...+.|.+..+|.+++.+++.+....+...
T Consensus       608 ~~~~l~~L~~~l~~--e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~  685 (1230)
T 1u6g_C          608 LPNTLQIFLERLKN--EITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSL  685 (1230)
T ss_dssp             HHHHHHHHHHHTTS--SSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTC
T ss_pred             HHHHHHHHHHHhcc--chhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccC
Confidence            25566666665554  358999999999988643   2356788999999999999999999999999999999887543


Q ss_pred             hhhcccchHHh--hhccCCCcccccccccCchhHHHHHHHHHHH
Q 006898          550 STFSVSPFSFM--LYLNVNNFNVGFIFAAFPLVLFSCLALNYCH  591 (626)
Q Consensus       550 ~~~~i~~~l~~--~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~  591 (626)
                      ..+.+.+.+..  .+.+|.|.++..         .+..++..+.
T Consensus       686 ~~~~v~~~l~~ll~ll~~~D~~~~~---------~~~~~L~~l~  720 (1230)
T 1u6g_C          686 TAAMIDAVLDELPPLISESDMHVSQ---------MAISFLTTLA  720 (1230)
T ss_dssp             CHHHHHHHHTTCGGGSCTTCHHHHH---------HHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHhhcCcchHHHHH---------HHHHHHHHHH
Confidence            33344444431  345677877776         6666665553

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=100.00  E-value=1.6e-33  Score=315.88  Aligned_cols=575  Identities=14%  Similarity=0.141  Sum_probs=454.0

Q ss_pred             HHHHHHHhcCc-cHHHHHHHHhhHHHHHHhhChH-----hhhhhhcccccc-ccCC--chHHHHHHHHHHhccccccCCc
Q 006898           11 IAVLIDELKND-DIQLRLNSIRRLSTIARALGEE-----RTRKELIPFLSE-NNDD--DDEVLLAMAEELGVFIPYVGGV   81 (626)
Q Consensus        11 i~~l~~~l~s~-d~~~r~~a~~~l~~i~~~~~~~-----~~~~~l~~~l~~-~~~~--~~~vr~~~~~~l~~~~~~~~~~   81 (626)
                      ++.|++.+.++ |+..|..++..+..+....+++     ...+.+++.+.. +.++  +++||.++.++++.++.+++..
T Consensus       136 l~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~  215 (861)
T 2bpt_A          136 MKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNN  215 (861)
T ss_dssp             HHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            56788888888 9999999999999998876643     244566676665 4555  7899999999999876654321


Q ss_pred             ----chhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChh--hHHH-hHHHHHHHHhcCCccchhHHHhhHhHHhcC
Q 006898           82 ----EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES--DLVD-WYIPLVKRLAAGEWFTARVSACGLFHIAYP  154 (626)
Q Consensus        82 ----~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~--~~~~-~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~  154 (626)
                          ..++.+++.+.....++++.+|..+++++..+++..+..  .... .+++.+.....+.+..+|..++..+..++.
T Consensus       216 ~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~  295 (861)
T 2bpt_A          216 MEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICE  295 (861)
T ss_dssp             HTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             ccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence                124567888888888899999999999999999877642  1222 566777777788888999999988877655


Q ss_pred             CC-----------------C---hHHHHHHHHHHHHhcCC-------CCHHHHHHHHHhHHHHHHhhCccchhhhHHHHH
Q 006898          155 SA-----------------P---DILKTELRSIYTQLCQD-------DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIF  207 (626)
Q Consensus       155 ~~-----------------~---~~~~~~l~~~l~~l~~d-------~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l  207 (626)
                      ..                 +   ......+++.+...+.+       +++.+|..+..+++.++...+. ...+.+++.+
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~-~~~~~l~~~l  374 (861)
T 2bpt_A          296 EEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN-HILEPVLEFV  374 (861)
T ss_dssp             HHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG-GGHHHHHHHH
T ss_pred             HHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH-hHHHHHHHHH
Confidence            32                 1   12346788888776653       4589999999999999998874 5567889999


Q ss_pred             HHhhcCCchhHHHHHHHHHHHhhcccCc---hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC----ccccc
Q 006898          208 EDLTQDDQDSVRLLAVEGCAALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----PTRMD  280 (626)
Q Consensus       208 ~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~  280 (626)
                      ...+++++|.+|..++.+++.+++..++   ..+.+.++|.+...+.|+++.||..++.+++.++...+..    .....
T Consensus       375 ~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~  454 (861)
T 2bpt_A          375 EQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPG  454 (861)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHH
T ss_pred             HHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHH
Confidence            9999999999999999999999987763   2345678888899999999999999999999999887642    34567


Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCh---H---HHHHhhHHHHHHhcc--CCCHHHHHHHHHHHHhhhhhhcH
Q 006898          281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---E---LAIQHILPCVKELSS--DSSQHVRSALASVIMGMAPLLGK  352 (626)
Q Consensus       281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~---~~~~~l~~~l~~l~~--d~~~~vr~~~~~~l~~l~~~~~~  352 (626)
                      ++|.+...++|+ +.+|..++.++..+++.++.   .   .+.+.+++.+...+.  |.++.+|.+++++++.++...+.
T Consensus       455 ~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~  533 (861)
T 2bpt_A          455 VVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATD  533 (861)
T ss_dssp             HHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCG
T ss_pred             HHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcch
Confidence            889999999887 89999999999999987751   1   344677788877776  44589999999999999988775


Q ss_pred             H--HHHHhHHHHHHHhhcC---------------CCHHHHHHHHHhhHHHHhhhchh--hHHhhHHHHHHHHhcCCCh-H
Q 006898          353 D--ATIEQLLPIFLSLLKD---------------EFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHW-R  412 (626)
Q Consensus       353 ~--~~~~~l~~~l~~~l~d---------------~~~~vr~~a~~~L~~~~~~~~~~--~~~~~i~~~l~~~~~~~~~-~  412 (626)
                      +  .+...++|.+...+.+               ....+|..++.+++.++...|.+  .+.+.+++.+.+.+++.++ .
T Consensus       534 ~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~  613 (861)
T 2bpt_A          534 TVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAF  613 (861)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGG
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCc
Confidence            4  2455677777766652               24678899999999999888764  2346788888888888877 8


Q ss_pred             HHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhhcCCC
Q 006898          413 VRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPH  488 (626)
Q Consensus       413 ~r~~~~~~l~~l~~~~~~~~--~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~~~~  488 (626)
                      +|..++.+++.++...|..+  +.+.++|.+...+.++++.+|..++.+++.++...|...  ....++|.+.+.+.+++
T Consensus       614 v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~  693 (861)
T 2bpt_A          614 IEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPN  693 (861)
T ss_dssp             THHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCcc
Confidence            99999999999999887654  357799999999999999999999999999999888642  34678888888888765


Q ss_pred             --hHHHHHHHHHHHHhccccChH--HhhhcHHHHHhhhCCCCC-----------chHHHHHHHHHHHHHhhhcc-----c
Q 006898          489 --YLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRV-----------PNIKFNVAKVLQSLIPIVDQ-----S  548 (626)
Q Consensus       489 --~~vR~~a~~~l~~i~~~~~~~--~~~~~~l~~l~~~l~d~~-----------~~vR~~a~~~l~~i~~~~~~-----~  548 (626)
                        +.+|..++.+++.++..++..  .+.+.++|.+...+....           ..+|..+++++..+...++.     .
T Consensus       694 ~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~  773 (861)
T 2bpt_A          694 ARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALF  773 (861)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHG
T ss_pred             ccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence              889999999999999887765  356788998888776432           46899999999999988773     2


Q ss_pred             hhhhcccchHHhhhccCC----CcccccccccCchhHHHHHHHHHHHHHh-hcC
Q 006898          549 VSTFSVSPFSFMLYLNVN----NFNVGFIFAAFPLVLFSCLALNYCHRWW-RKQ  597 (626)
Q Consensus       549 ~~~~~i~~~l~~~l~~d~----d~~vr~~~~~~~~~~~a~~al~~~~~~~-~~~  597 (626)
                      .+.+.+++.+. ....|.    +..+|.         .|..+++.+...+ +..
T Consensus       774 ~~~~~i~~~l~-~~~~d~~~~~~~~vr~---------~a~~~l~~l~~~~~g~~  817 (861)
T 2bpt_A          774 PYVGTIFQFIA-QVAEDPQLYSEDATSR---------AAVGLIGDIAAMFPDGS  817 (861)
T ss_dssp             GGHHHHHHHHH-HHHHCHHHHTSHHHHH---------HHHHHHHHHHHHCTTST
T ss_pred             HHHHHHHHHHH-HHHcCcccCCcHHHHH---------HHHHHHHHHHHHcCCch
Confidence            34456666666 666674    889999         9999999998777 443

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=100.00  E-value=7e-34  Score=329.04  Aligned_cols=574  Identities=12%  Similarity=0.142  Sum_probs=455.2

Q ss_pred             cccHHHHHHHhcCccHHHHHHHHhhHHHHHHhhC---hHhhhhhhcccccc-ccCCchHHHHHHHHHHhccccccCCcch
Q 006898            8 LYPIAVLIDELKNDDIQLRLNSIRRLSTIARALG---EERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEH   83 (626)
Q Consensus         8 ~~~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~---~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~   83 (626)
                      -+.+..+++++.|+|.+.|.+|...|.+....-.   .+...+.+++.+.+ +.|+++++|.+++.+++.++..++. ..
T Consensus         5 ~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~   83 (1230)
T 1u6g_C            5 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQ   83 (1230)
T ss_dssp             CHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HH
T ss_pred             HhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HH
Confidence            3678999999999999999999999887643211   11234466666655 6688999999999999999887653 56


Q ss_pred             hhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChh--------hHHHhHHHHHHHHhcC-CccchhHHHhhHhHHhcC
Q 006898           84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES--------DLVDWYIPLVKRLAAG-EWFTARVSACGLFHIAYP  154 (626)
Q Consensus        84 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~--------~~~~~l~~~l~~l~~~-~~~~~r~~a~~~l~~~~~  154 (626)
                      .+.+++.+...+.|+++.+|..|..+++.++..+++.        ...+.++|.+...+.+ +++.+|..++..++.++.
T Consensus        84 ~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~  163 (1230)
T 1u6g_C           84 VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS  163 (1230)
T ss_dssp             HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence            6778888777778888899999999999999988865        2567789999888874 778899999999998875


Q ss_pred             CCCh---HHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhh
Q 006898          155 SAPD---ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALG  230 (626)
Q Consensus       155 ~~~~---~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~-~~~vr~~a~~~l~~l~  230 (626)
                      ..++   .+.+.+++.+...+.|+++.||..++.+++.++...+++. .+.+++.+...+.+. ++.+|..++++++.++
T Consensus       164 ~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~  242 (1230)
T 1u6g_C          164 RQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAIS  242 (1230)
T ss_dssp             HTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHH
T ss_pred             HhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHH
Confidence            4433   3678899999999999999999999999999998776543 455667666665544 3578889999999999


Q ss_pred             cccCc--hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhcC----------------
Q 006898          231 KLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLR----------------  290 (626)
Q Consensus       231 ~~~~~--~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~----------------  290 (626)
                      ...+.  ..+.+.++|.+...+.|.++.+|..++.+++.++..++.+.  +...++|.++..+.                
T Consensus       243 ~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~  322 (1230)
T 1u6g_C          243 RQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENA  322 (1230)
T ss_dssp             HHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC--------------
T ss_pred             HHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCccccccccc
Confidence            88776  34567899999999999999999999999999999887653  33456666665553                


Q ss_pred             ---------------------CChHHHHHHHHHhHHHHHHhhCh--HHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhh
Q 006898          291 ---------------------DNEAEVRIAAAGKVTKFCRILNP--ELAIQHILPCVKELSSDSSQHVRSALASVIMGMA  347 (626)
Q Consensus       291 ---------------------d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~  347 (626)
                                           |..+.+|.+|+.++..++...+.  ..+.+.++|.+...+.|+++.||.+++.++..+.
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~  402 (1230)
T 1u6g_C          323 MDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLL  402 (1230)
T ss_dssp             ----------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHH
T ss_pred             ccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence                                 11256899999999999986653  3556788899888889999999999999988887


Q ss_pred             hhhcH---------------------HHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchh--hHHhhHHHHHHH
Q 006898          348 PLLGK---------------------DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVE  404 (626)
Q Consensus       348 ~~~~~---------------------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~--~~~~~i~~~l~~  404 (626)
                      ...+.                     ..+.+.++|.+...++|+++.+|.+++..++.+....+..  .+.+.++|.+.+
T Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~  482 (1230)
T 1u6g_C          403 KQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIF  482 (1230)
T ss_dssp             HHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHH
T ss_pred             HHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHH
Confidence            65532                     2344567788888899999999999999999998765321  234678999999


Q ss_pred             HhcCCCh--HHHHHHHHHHHHHHHhhChhh---HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh-------H--
Q 006898          405 LAEDRHW--RVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP-------E--  470 (626)
Q Consensus       405 ~~~~~~~--~~r~~~~~~l~~l~~~~~~~~---~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~-------~--  470 (626)
                      .++|+++  .+|..++..+..+....+++.   +.+.++|.+...+.|+++.||..++.+++.++..++.       .  
T Consensus       483 ~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~  562 (1230)
T 1u6g_C          483 SLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDAT  562 (1230)
T ss_dssp             HTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCH
T ss_pred             HHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchH
Confidence            9999876  899999999999988777764   3456889999999999999999999999999998876       1  


Q ss_pred             HHhhhhHHHHHhhh--cCCChHHHHHHHHHHHHhccccChHH--hhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhc
Q 006898          471 WAMQHITPQVLEMI--NNPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  546 (626)
Q Consensus       471 ~~~~~il~~l~~~l--~~~~~~vR~~a~~~l~~i~~~~~~~~--~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~  546 (626)
                      .+.+.++|.+...+  .|+++.+|..++.+++.++...|...  +.+.+++.+...+.+.  ..|..++++++.+.....
T Consensus       563 ~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e--~~r~~~~~al~~i~~~~~  640 (1230)
T 1u6g_C          563 PYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNE--ITRLTTVKALTLIAGSPL  640 (1230)
T ss_dssp             HHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSS--SHHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccc--hhHHHHHHHHHHHHhCcc
Confidence            24578899988888  77889999999999999998877542  4577788887777653  589999999999876432


Q ss_pred             c---chhhhcccchHHhhhccCCCcccccccccCchhHHHHHHHHHHHHHhh
Q 006898          547 Q---SVSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCHRWWR  595 (626)
Q Consensus       547 ~---~~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~~~~~  595 (626)
                      .   ..+.+.++|.+. ..+.|++..+|.         ++..+++.+....+
T Consensus       641 ~~~~~~~~~~i~~~L~-~~l~~~~~~~r~---------~a~~al~~l~~~~~  682 (1230)
T 1u6g_C          641 KIDLRPVLGEGVPILA-SFLRKNQRALKL---------GTLSALDILIKNYS  682 (1230)
T ss_dssp             CCCCHHHHHHHHHHHH-HHTTSCCHHHHH---------HHHHHHHHHHHHCC
T ss_pred             ccchHHHHHHHHHHHH-HHHHhCCHHHHH---------HHHHHHHHHHhccc
Confidence            2   356688999999 899999999999         99999988865543

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=100.00  E-value=4.5e-32  Score=304.03  Aligned_cols=570  Identities=11%  Similarity=0.069  Sum_probs=439.6

Q ss_pred             HHHHhcC--ccHHHHHHHHhhHHHHH---------------Hh-hChHhhhhhhcccccc-ccCCchHHHHHHHHHHhcc
Q 006898           14 LIDELKN--DDIQLRLNSIRRLSTIA---------------RA-LGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVF   74 (626)
Q Consensus        14 l~~~l~s--~d~~~r~~a~~~l~~i~---------------~~-~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~   74 (626)
                      |++-+.+  .+..+|..|...|.+..               .. +++ ..+..+.+.+.+ +.++++.+|..++.+++.+
T Consensus        44 l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~-~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i  122 (861)
T 2bpt_A           44 SSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSP-EAKNQIKTNALTALVSIEPRIANAAAQLIAAI  122 (861)
T ss_dssp             HHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHhHhhhCCH-HHHHHHHHHHHHHHCCCchHHHHHHHHHHHHH
Confidence            3444433  35667777766666542               11 322 233344444444 4567889999999999988


Q ss_pred             ccccCCcchhhcchHHHhhhhcCc-chHHHHHHHHHHHHHHhhcChh-----hHHHhHHHHHHHHhcCC--ccchhHHHh
Q 006898           75 IPYVGGVEHAHVLLPPLETLCTVE-ETCVRDKAVESLCRIGSQMRES-----DLVDWYIPLVKRLAAGE--WFTARVSAC  146 (626)
Q Consensus        75 ~~~~~~~~~~~~l~~~l~~l~~~~-~~~vR~~a~~~l~~i~~~~~~~-----~~~~~l~~~l~~l~~~~--~~~~r~~a~  146 (626)
                      +........|+.++|.+...+.++ ++.+|+.++.++..+++.++++     .....+++.+...+.++  +..+|..++
T Consensus       123 ~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al  202 (861)
T 2bpt_A          123 ADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAAL  202 (861)
T ss_dssp             HHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHH
T ss_pred             HHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Confidence            775432236888999988888887 8999999999999999877653     23455777777777776  778999999


Q ss_pred             hHhHHhcCCCChH-----HHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCcc--chhh-hHHHHHHHhhcCCchhH
Q 006898          147 GLFHIAYPSAPDI-----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKT-DIMSIFEDLTQDDQDSV  218 (626)
Q Consensus       147 ~~l~~~~~~~~~~-----~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~-~ll~~l~~l~~d~~~~v  218 (626)
                      .+++.+...+...     .++.+++.+...+.++++.+|..++++++.++...+..  .+.. .+++.+...+.|.++.+
T Consensus       203 ~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~v  282 (861)
T 2bpt_A          203 NALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKV  282 (861)
T ss_dssp             HHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHH
T ss_pred             HHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence            9998876554322     34568888888889999999999999999999887642  2334 67788888889999999


Q ss_pred             HHHHHHHHHHhhcccCc-------------------hhhhhhhHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHh
Q 006898          219 RLLAVEGCAALGKLLEP-------------------QDCVAHILPVIVNFSQ-------DKSWRVRYMVANQLYELCEAV  272 (626)
Q Consensus       219 r~~a~~~l~~l~~~~~~-------------------~~~~~~i~~~l~~~~~-------d~~~~vR~~a~~~l~~l~~~~  272 (626)
                      |..+++.+..+++....                   ..+...++|.+...+.       |.+|.+|..+..+++.++..+
T Consensus       283 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~  362 (861)
T 2bpt_A          283 ASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNC  362 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHc
Confidence            99999999988875310                   1233567777766554       346899999999999999988


Q ss_pred             CCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChH---HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhh
Q 006898          273 GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL  349 (626)
Q Consensus       273 ~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~  349 (626)
                      |... ...+++.+.+.+++.+|.+|.+++.+++.+++..+++   .+.+.++|.+...+.|+++.||.+++.+++.++..
T Consensus       363 ~~~~-~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~  441 (861)
T 2bpt_A          363 GNHI-LEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADS  441 (861)
T ss_dssp             GGGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             cHhH-HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence            8433 4578888888999999999999999999998766533   23467888888999999999999999999999987


Q ss_pred             hcH----HHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhch---h---hHHhhHHHHHHHHhcC--CChHHHHHH
Q 006898          350 LGK----DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---D---LLSQSLLPAIVELAED--RHWRVRLAI  417 (626)
Q Consensus       350 ~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~---~---~~~~~i~~~l~~~~~~--~~~~~r~~~  417 (626)
                      ++.    ..+.+.++|.+...+.|+ +.||..++.++..+++..+.   +   .+.+.+++.+.+.+++  .++.+|..+
T Consensus       442 ~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a  520 (861)
T 2bpt_A          442 VAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASA  520 (861)
T ss_dssp             HGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHH
T ss_pred             hhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHH
Confidence            764    345678899999999887 99999999999999887651   1   2346778888888874  458999999


Q ss_pred             HHHHHHHHHhhChhh--HHHHHHHHHHHHhcC---------------CchHHHHHHHHHHHHHHHHhChHH--HhhhhHH
Q 006898          418 IEYIPLLASQLGVGF--FDDKLGALCMQWLQD---------------KVYSIRDAAANNLKRLAEEFGPEW--AMQHITP  478 (626)
Q Consensus       418 ~~~l~~l~~~~~~~~--~~~~l~p~l~~~l~d---------------~~~~VR~~a~~~l~~l~~~~~~~~--~~~~il~  478 (626)
                      +++++.++...+...  +...++|.++..+.+               ....+|..++.+++.++..+|...  ....+++
T Consensus       521 ~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~  600 (861)
T 2bpt_A          521 FSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMG  600 (861)
T ss_dssp             HHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHH
T ss_pred             HHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            999999999887653  335677777766542               356789999999999999988752  3467888


Q ss_pred             HHHhhhcCCCh-HHHHHHHHHHHHhccccChH--HhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc--hhhhc
Q 006898          479 QVLEMINNPHY-LYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VSTFS  553 (626)
Q Consensus       479 ~l~~~l~~~~~-~vR~~a~~~l~~i~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~--~~~~~  553 (626)
                      .+.+.+++.+. .+|..++.+++.++...+..  .+.+.++|.+...++++++.+|..++.+++.+....|..  .+.+.
T Consensus       601 ~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~  680 (861)
T 2bpt_A          601 LFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDA  680 (861)
T ss_dssp             HHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHH
T ss_pred             HHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHH
Confidence            88888888877 89999999999998877654  357789999999999999999999999999999888764  44567


Q ss_pred             ccchHHhhhccCCC--cccccccccCchhHHHHHHHHHHHHHhhc
Q 006898          554 VSPFSFMLYLNVNN--FNVGFIFAAFPLVLFSCLALNYCHRWWRK  596 (626)
Q Consensus       554 i~~~l~~~l~~d~d--~~vr~~~~~~~~~~~a~~al~~~~~~~~~  596 (626)
                      +++.+. ..+.+++  .++|.         .+..+++.+....+.
T Consensus       681 l~~~l~-~~l~~~~~~~~vr~---------~~~~~l~~l~~~~~~  715 (861)
T 2bpt_A          681 MMNVLA-QMISNPNARRELKP---------AVLSVFGDIASNIGA  715 (861)
T ss_dssp             HHHHHH-HHHHCTTCCTTHHH---------HHHHHHHHHHHHHGG
T ss_pred             HHHHHH-HHhCCccccHhhhH---------HHHHHHHHHHHHhhh
Confidence            777777 6666654  88999         888888887665544

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=100.00  E-value=7.9e-31  Score=294.55  Aligned_cols=574  Identities=13%  Similarity=0.139  Sum_probs=423.0

Q ss_pred             cHHHHHHHhcCc--cHHHHHHHHhhHHHHHHhhChHh---hhhhhcccccc-ccCC--chHHHHHHHHHHhccccccCCc
Q 006898           10 PIAVLIDELKND--DIQLRLNSIRRLSTIARALGEER---TRKELIPFLSE-NNDD--DDEVLLAMAEELGVFIPYVGGV   81 (626)
Q Consensus        10 ~i~~l~~~l~s~--d~~~r~~a~~~l~~i~~~~~~~~---~~~~l~~~l~~-~~~~--~~~vr~~~~~~l~~~~~~~~~~   81 (626)
                      -++.|++.+.++  ++..|..+++.+..+....+++.   ..+.+++.+.+ +.++  ++++|..+.++++.++..++..
T Consensus       129 ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~  208 (876)
T 1qgr_A          129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN  208 (876)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHH
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            367788888888  99999999999999987765432   23455666665 4444  6899999999999887654421


Q ss_pred             ----chhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChh--hHHH-hHHHHHHHHhcCCccchhHHHhhHhHHhcC
Q 006898           82 ----EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES--DLVD-WYIPLVKRLAAGEWFTARVSACGLFHIAYP  154 (626)
Q Consensus        82 ----~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~--~~~~-~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~  154 (626)
                          ...+.+++.+..+..++++.+|..+++++..+++..++.  .... .+++.+.....+.++.+|..++..+..+..
T Consensus       209 ~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~  288 (876)
T 1qgr_A          209 FDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD  288 (876)
T ss_dssp             HTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence                111346777777778888999999999999999876642  1223 577777777777788889888877766643


Q ss_pred             CC---------------------Ch---HHHHHHHHHHHHhcC-------CCCHHHHHHHHHhHHHHHHhhCccchhhhH
Q 006898          155 SA---------------------PD---ILKTELRSIYTQLCQ-------DDMPMVRRSAASNLGKFAATVEPAHLKTDI  203 (626)
Q Consensus       155 ~~---------------------~~---~~~~~l~~~l~~l~~-------d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l  203 (626)
                      ..                     ..   .....+++.+...+.       |.+|.+|+++..+++.++...+. ...+.+
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~  367 (876)
T 1qgr_A          289 EEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHV  367 (876)
T ss_dssp             HHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG-GGHHHH
T ss_pred             HHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH-hhHHHH
Confidence            21                     01   133667777777653       45789999999999999998874 556788


Q ss_pred             HHHHHHhhcCCchhHHHHHHHHHHHhhcccCch---hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC----c
Q 006898          204 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----P  276 (626)
Q Consensus       204 l~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~----~  276 (626)
                      +|.+...++|++|.+|..++.+++.+++..+++   .+.+.++|.+...+.|+++.||..++.+++.++...+..    .
T Consensus       368 l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~  447 (876)
T 1qgr_A          368 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDV  447 (876)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTT
T ss_pred             HHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHH
Confidence            899999999999999999999999999887732   356778898889999999999999999999999886542    3


Q ss_pred             cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC----------------hHHHHHhhHHHHHHhccCC---CHHHH-
Q 006898          277 TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN----------------PELAIQHILPCVKELSSDS---SQHVR-  336 (626)
Q Consensus       277 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~----------------~~~~~~~l~~~l~~l~~d~---~~~vr-  336 (626)
                      ....+++.+...++|. +.||..++.++..++...+                ...+.+.++|.+...+.+.   +..+| 
T Consensus       448 ~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~  526 (876)
T 1qgr_A          448 YLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRS  526 (876)
T ss_dssp             THHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHH
T ss_pred             HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHH
Confidence            3457888888888886 8899999999999887653                1123456677766655442   23344 


Q ss_pred             -------------------------------------------------------HHHHHHHHhhhhhhc-HH--HHHHh
Q 006898          337 -------------------------------------------------------SALASVIMGMAPLLG-KD--ATIEQ  358 (626)
Q Consensus       337 -------------------------------------------------------~~~~~~l~~l~~~~~-~~--~~~~~  358 (626)
                                                                             ..++.+++.++..+| ..  .+.+.
T Consensus       527 ~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~  606 (876)
T 1qgr_A          527 SAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDV  606 (876)
T ss_dssp             HHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHH
T ss_pred             HHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHH
Confidence                                                                   444445555555455 22  12455


Q ss_pred             HHHHHHHhhcCCC--HHHHHHHHHhhHHHHhhhchhh--HHhhHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHhhChhh-
Q 006898          359 LLPIFLSLLKDEF--PDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVGF-  432 (626)
Q Consensus       359 l~~~l~~~l~d~~--~~vr~~a~~~L~~~~~~~~~~~--~~~~i~~~l~~~~~~~-~~~~r~~~~~~l~~l~~~~~~~~-  432 (626)
                      ++|.+...+++..  +.+|..++.+++.+....|...  +.+.++|.+...+.+. ++.+|..++..++.++...|... 
T Consensus       607 l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~  686 (876)
T 1qgr_A          607 VMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNII  686 (876)
T ss_dssp             HHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGH
T ss_pred             HHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhh
Confidence            7777788887664  4789999999999888766542  2356788888888876 89999999999999998887543 


Q ss_pred             -HHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhhcCCC-----------hHHHHHHH
Q 006898          433 -FDDKLGALCMQWLQD--KVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPH-----------YLYRMTIL  496 (626)
Q Consensus       433 -~~~~l~p~l~~~l~d--~~~~VR~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~~~~-----------~~vR~~a~  496 (626)
                       +.+.+++.+...+.+  .+..+|..++.+++.++..+|+++  +...++|.+.+.+.++.           ..+|..++
T Consensus       687 ~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~  766 (876)
T 1qgr_A          687 PFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCL  766 (876)
T ss_dssp             HHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHH
Confidence             346788888888876  457899999999999999888763  24667777777665442           27899999


Q ss_pred             HHHHHhccccCh------------HHhhhcHHHHHhhhCCCC--CchHHHHHHHHHHHHHhhhcc-c--hh-hhcccchH
Q 006898          497 RAISLLAPVMGS------------EITCSRLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQ-S--VS-TFSVSPFS  558 (626)
Q Consensus       497 ~~l~~i~~~~~~------------~~~~~~~l~~l~~~l~d~--~~~vR~~a~~~l~~i~~~~~~-~--~~-~~~i~~~l  558 (626)
                      .+++.+++.++.            ..+.+.+++.+.....|+  +..||..|+.+|+.+....|. .  .+ .+.+++.+
T Consensus       767 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~l  846 (876)
T 1qgr_A          767 EAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHEL  846 (876)
T ss_dssp             HHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHH
T ss_pred             HHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHH
Confidence            988877765432            124456667776666777  679999999999999999877 3  22 44566666


Q ss_pred             HhhhccCCCcccccccccCchhHHHHHHHHHHHHHh
Q 006898          559 FMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCHRWW  594 (626)
Q Consensus       559 ~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~~~~  594 (626)
                      ....+.|++.++|.         .|..|++.+.+..
T Consensus       847 l~~~l~~~~~~~r~---------~a~~a~~~~~~~~  873 (876)
T 1qgr_A          847 LTEGRRSKTNKAKT---------LARWATKELRKLK  873 (876)
T ss_dssp             HHHHHHCSCHHHHH---------HHHHHHHHHHHHH
T ss_pred             HHHHhhcCCHhHHH---------HHHHHHHHHHHhh
Confidence            61378899999999         9999999987653

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=100.00  E-value=2.8e-31  Score=298.14  Aligned_cols=571  Identities=16%  Similarity=0.155  Sum_probs=432.0

Q ss_pred             HHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhcccccc-ccCC--chHHHHHHHHHHhccccccCC---cchhhc
Q 006898           13 VLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDD--DDEVLLAMAEELGVFIPYVGG---VEHAHV   86 (626)
Q Consensus        13 ~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~--~~~vr~~~~~~l~~~~~~~~~---~~~~~~   86 (626)
                      .+++.+.++++.. ..+...++.++...++...+++++|.+.+ +.++  ++.+|..+..+++.+....++   ..+.+.
T Consensus        94 ~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~  172 (876)
T 1qgr_A           94 YVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNE  172 (876)
T ss_dssp             HHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHH
T ss_pred             HHHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHH
Confidence            3778888888888 88999999998887666678899999988 5566  889999999999988775432   235566


Q ss_pred             chHHHhhhhcCc--chHHHHHHHHHHHHHHhhcChh----hHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCCh--
Q 006898           87 LLPPLETLCTVE--ETCVRDKAVESLCRIGSQMRES----DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD--  158 (626)
Q Consensus        87 l~~~l~~l~~~~--~~~vR~~a~~~l~~i~~~~~~~----~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~--  158 (626)
                      +++.+...+.++  +..+|..|++++..+...++..    .....+++.+.....++++.+|..++.++..+....++  
T Consensus       173 ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~  252 (876)
T 1qgr_A          173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYM  252 (876)
T ss_dssp             HHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGC
T ss_pred             HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHH
Confidence            777777777776  6889999999999988765432    12235788888888888889999999999988765554  


Q ss_pred             -HHHH-HHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhC------------------c-cc----hhhhHHHHHHHhhc-
Q 006898          159 -ILKT-ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVE------------------P-AH----LKTDIMSIFEDLTQ-  212 (626)
Q Consensus       159 -~~~~-~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~------------------~-~~----~~~~ll~~l~~l~~-  212 (626)
                       .+.. .+++.+.....+.+..||..+++.+..+++...                  . ..    ....++|.+...+. 
T Consensus       253 ~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~  332 (876)
T 1qgr_A          253 ETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTK  332 (876)
T ss_dssp             HHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhc
Confidence             2344 788888888889999999999999988876531                  0 01    22567777777664 


Q ss_pred             ------CCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC---ccccchHH
Q 006898          213 ------DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRMDLVP  283 (626)
Q Consensus       213 ------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~  283 (626)
                            |+++.+|..+..++..++...+. ...+.++|.+...+.|++|.+|..++.+++.++...+.+   .....++|
T Consensus       333 ~~~d~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~  411 (876)
T 1qgr_A          333 QDENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMP  411 (876)
T ss_dssp             CCSSCCTTCCCHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHH
T ss_pred             ccccccccccHHHHHHHHHHHHHHHHCcH-hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence                  34689999999999999998874 456788999999999999999999999999987654411   12346889


Q ss_pred             HHHHhcCCChHHHHHHHHHhHHHHHHhhCh----HHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhc--------
Q 006898          284 AYVRLLRDNEAEVRIAAAGKVTKFCRILNP----ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG--------  351 (626)
Q Consensus       284 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~--------  351 (626)
                      .+...++|+++.||..|+.+++.+++..+.    ..+.+.+++.+...+.|. +.||..++.++..++..++        
T Consensus       412 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~  490 (876)
T 1qgr_A          412 TLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADD  490 (876)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTS
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccc
Confidence            999999999999999999999999998654    234577888888888875 9999999999999887654        


Q ss_pred             --------HHHHHHhHHHHHHHhhcCC---CHHHHHHHHH----------------------------------------
Q 006898          352 --------KDATIEQLLPIFLSLLKDE---FPDVRLNIIS----------------------------------------  380 (626)
Q Consensus       352 --------~~~~~~~l~~~l~~~l~d~---~~~vr~~a~~----------------------------------------  380 (626)
                              -..+.+.++|.+...+.+.   +..+|..+++                                        
T Consensus       491 ~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~  570 (876)
T 1qgr_A          491 QEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQS  570 (876)
T ss_dssp             CCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCS
T ss_pred             cccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence                    1234567788888777653   2345544444                                        


Q ss_pred             ----------------hhHHHHhhhc-hhh--HHhhHHHHHHHHhcCCC--hHHHHHHHHHHHHHHHhhChhh--HHHHH
Q 006898          381 ----------------KLDQVNQVIG-IDL--LSQSLLPAIVELAEDRH--WRVRLAIIEYIPLLASQLGVGF--FDDKL  437 (626)
Q Consensus       381 ----------------~L~~~~~~~~-~~~--~~~~i~~~l~~~~~~~~--~~~r~~~~~~l~~l~~~~~~~~--~~~~l  437 (626)
                                      +++.++..+| .+.  +...++|.+.+.+++.+  +.+|..++.+++.++...+..+  +.+.+
T Consensus       571 ~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~  650 (876)
T 1qgr_A          571 TSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAF  650 (876)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence                            4444444444 221  22456777777777654  6899999999999998876543  34678


Q ss_pred             HHHHHHHhcCC-chHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhhcC--CChHHHHHHHHHHHHhccccChHH--
Q 006898          438 GALCMQWLQDK-VYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINN--PHYLYRMTILRAISLLAPVMGSEI--  510 (626)
Q Consensus       438 ~p~l~~~l~d~-~~~VR~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~~--~~~~vR~~a~~~l~~i~~~~~~~~--  510 (626)
                      +|.+...+.+. ++.||..++.+++.++...|...  ....+++.+.+.+.+  .+..+|..++.+++.++..+|.++  
T Consensus       651 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~  730 (876)
T 1qgr_A          651 KPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKK  730 (876)
T ss_dssp             HHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGG
T ss_pred             HHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHH
Confidence            89999999887 89999999999999999887643  246788888888776  467899999999999998777653  


Q ss_pred             hhhcHHHHHhhhCCCCC-----------chHHHHHHHHHHHHHhhhccc------------hhhhcccchHHhhhccCC-
Q 006898          511 TCSRLLPVVINASKDRV-----------PNIKFNVAKVLQSLIPIVDQS------------VSTFSVSPFSFMLYLNVN-  566 (626)
Q Consensus       511 ~~~~~l~~l~~~l~d~~-----------~~vR~~a~~~l~~i~~~~~~~------------~~~~~i~~~l~~~l~~d~-  566 (626)
                      +.+.++|.+...++++.           ..+|..+.+++..+...++..            .+.+.+++.+. .+..|+ 
T Consensus       731 ~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~-~~~~~~~  809 (876)
T 1qgr_A          731 YLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFID-HIAGDED  809 (876)
T ss_dssp             GHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHH-HHHTCSC
T ss_pred             HHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHH-HHhcCCC
Confidence            56788888888776553           279999999999988876641            23345555555 555676 


Q ss_pred             -CcccccccccCchhHHHHHHHHHHHHHhhc
Q 006898          567 -NFNVGFIFAAFPLVLFSCLALNYCHRWWRK  596 (626)
Q Consensus       567 -d~~vr~~~~~~~~~~~a~~al~~~~~~~~~  596 (626)
                       +..+|.         .|..+++.+....+.
T Consensus       810 ~~~~vr~---------~a~~~l~~l~~~~~~  831 (876)
T 1qgr_A          810 HTDGVVA---------CAAGLIGDLCTAFGK  831 (876)
T ss_dssp             CCHHHHH---------HHHHHHHHHHHHHCT
T ss_pred             CCHHHHH---------HHHHHHHHHHHHhCc
Confidence             678999         899999988776644

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.94  E-value=1.1e-23  Score=223.23  Aligned_cols=508  Identities=15%  Similarity=0.115  Sum_probs=365.8

Q ss_pred             cccHHHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhcccccc-ccCCchHHHHHHHHHHhccccccCCcchhhc
Q 006898            8 LYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHV   86 (626)
Q Consensus         8 ~~~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~   86 (626)
                      -..+..+.+.|+++|...|..+++.+-.+ ..+|.+.  +.+.+.+.. +.+++.++|+.+...+..+.+.  .++....
T Consensus        12 ~~e~~~i~~~L~~~~~~~k~~~~~kli~~-~~~G~d~--~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~e~~~l   86 (591)
T 2vgl_B           12 KGEIFELKAELNNEKKEKRKEAVKKVIAA-MTVGKDV--SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKS--QPDMAIM   86 (591)
T ss_dssp             SSHHHHHHHHTTSSCHHHHHHHHHHHHHH-HHTTCCC--GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH--SHHHHHT
T ss_pred             CChHHHHHHHHcCCCHHHHHHHHHHHHHH-HHCCCCh--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc--CchHHHH
Confidence            35789999999999999999998888865 4456432  334444444 5678999999988888877652  2444455


Q ss_pred             chHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHH-HHHH
Q 006898           87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILK-TELR  165 (626)
Q Consensus        87 l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~-~~l~  165 (626)
                      +.+.+.+-++|+++.+|..|+.+++.+.    ...+.+.+.|.+..++.|+++.+|..|+.++..++...++... ..++
T Consensus        87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~----~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~  162 (591)
T 2vgl_B           87 AVNSFVKDCEDPNPLIRALAVRTMGCIR----VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFL  162 (591)
T ss_dssp             THHHHGGGSSSSSHHHHHHHHHHHHTCC----SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHcCC----hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHH
Confidence            5667777788999999999988887764    3345567888888999999999999999999999886655333 4688


Q ss_pred             HHHHHhcCCCCHHHHHHHHHhHHHHHHhhCcc---chhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhh
Q 006898          166 SIYTQLCQDDMPMVRRSAASNLGKFAATVEPA---HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHI  242 (626)
Q Consensus       166 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i  242 (626)
                      +.+..+++|+++.||.+|+.+|+.++...+..   ......++.+...+.+.++..+...++.+..++..  .......+
T Consensus       163 ~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~--~~~~~~~~  240 (591)
T 2vgl_B          163 DSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPK--DDREAQSI  240 (591)
T ss_dssp             HHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC--SHHHHHHH
T ss_pred             HHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC--ChHHHHHH
Confidence            99999999999999999999999988764422   12234455566666777777777777777655422  12235678


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC--CCcc---ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHH
Q 006898          243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEPT---RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAI  317 (626)
Q Consensus       243 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~--~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~  317 (626)
                      ++.+...+++.++.|+..++.++..+....+  .+..   ...+.+.+..++ ++++++|..++.++..+....+ +.+.
T Consensus       241 l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p-~~~~  318 (591)
T 2vgl_B          241 CERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRP-EILK  318 (591)
T ss_dssp             HHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCC-STTT
T ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhCh-HHHH
Confidence            8888888999999999999999988764331  1111   123445555555 4778999999999999987532 2211


Q ss_pred             HhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhh
Q 006898          318 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS  397 (626)
Q Consensus       318 ~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~  397 (626)
                      +. +..+....+|+ +.+|..+++.+..++..-+    .+.+++.+...+.+.+.++|..++.+++.++..++...  +.
T Consensus       319 ~~-~~~~~~~~~d~-~~Ir~~al~~L~~l~~~~n----v~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~--~~  390 (591)
T 2vgl_B          319 QE-IKVFFVKYNDP-IYVKLEKLDIMIRLASQAN----IAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSA--ER  390 (591)
T ss_dssp             TC-TTTTSCCTTSC-HHHHHHHHHHHHHTCCSST----HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHH--HH
T ss_pred             HH-HHhheeccCCh-HHHHHHHHHHHHHHCChhh----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHH--HH
Confidence            11 11122222444 9999999999888874322    44677888889999999999999999999998765432  56


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHhChHHHhhhh
Q 006898          398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPEWAMQHI  476 (626)
Q Consensus       398 i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~-d~~~~VR~~a~~~l~~l~~~~~~~~~~~~i  476 (626)
                      +++.+.+++.+....++..++..+..+....+..  .+..++.+...+. +..+.+|..+++++|.++.....   ...+
T Consensus       391 ~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~--~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~---~~~~  465 (591)
T 2vgl_B          391 CVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK--YESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN---ADEL  465 (591)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS--CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT---HHHH
T ss_pred             HHHHHHHHHcccchHHHHHHHHHHHHHHHHCcch--HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC---HHHH
Confidence            8899999999999899998888888887655432  1234455666665 56788999999999998765532   2456


Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCC-CCchHHHHHHHHHHHHH
Q 006898          477 TPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKD-RVPNIKFNVAKVLQSLI  542 (626)
Q Consensus       477 l~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d-~~~~vR~~a~~~l~~i~  542 (626)
                      +..+.+.+.+.+..+|..++.++.++....+.. ..+.+...+.....| .+.+||..|...+.-+.
T Consensus       466 l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~-~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll~  531 (591)
T 2vgl_B          466 LESFLEGFHDESTQVQLTLLTAIVKLFLKKPSE-TQELVQQVLSLATQDSDNPDLRDRGYIYWRLLS  531 (591)
T ss_dssp             HHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCST-THHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTT
T ss_pred             HHHHHHhhccCCHHHHHHHHHHHHHHHhcCchH-HHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHC
Confidence            667777777788999999999999998765532 112223333333355 67799999988776653

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.92  E-value=7.9e-23  Score=211.86  Aligned_cols=390  Identities=15%  Similarity=0.087  Sum_probs=257.2

Q ss_pred             ccccccccCCchHHHHHHHHHHhccccccCCcchhhcchHHHhhhhcC-cchHHHHHHHHHHHHHHhhcChhhHHHhHHH
Q 006898           50 IPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTV-EETCVRDKAVESLCRIGSQMRESDLVDWYIP  128 (626)
Q Consensus        50 ~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~-~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~  128 (626)
                      ...|....++++++|+.+.+.|.++... ..+.++..++.+   +.++ .++.+|+.|...++...+........ .   
T Consensus         4 ~~~L~~~~s~d~~~r~~Ae~~L~~~~~~-~~~~~~~~L~~i---l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~-~---   75 (462)
T 1ibr_B            4 ITILEKTVSPDRLELEAAQKFLERAAVE-NLPTFLVELSRV---LANPGNSQVARVAAGLQIKNSLTSKDPDIKA-Q---   75 (462)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---HHCTTSCHHHHHHHHHHHHHHHCCSSHHHHH-H---
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHhh-ChHHHHHHHHHH---HHcCCCChHHHHHHHHHHHHhccccchHHHH-H---
Confidence            3444456677777777777777764331 012222222222   2222 35677777777776665432111000 0   


Q ss_pred             HHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHH
Q 006898          129 LVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFE  208 (626)
Q Consensus       129 ~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~  208 (626)
                                          +...+..++++.+..+...++..+.++++.+ ..++.+++.++....+...|+.++|.+.
T Consensus        76 --------------------~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~  134 (462)
T 1ibr_B           76 --------------------YQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLV  134 (462)
T ss_dssp             --------------------HHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHH
T ss_pred             --------------------HHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHH
Confidence                                0001233556667778887888888887888 8888889888887655456788889888


Q ss_pred             HhhcCC--chhHHHHHHHHHHHhhcccCc---hhhhhhhHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHhC----CCcc
Q 006898          209 DLTQDD--QDSVRLLAVEGCAALGKLLEP---QDCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVG----PEPT  277 (626)
Q Consensus       209 ~l~~d~--~~~vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~d~--~~~vR~~a~~~l~~l~~~~~----~~~~  277 (626)
                      ..++++  ++.+|..++.+++.+++....   ..+.+.+++.+...+.|+  ++.||..++++++.+....+    ....
T Consensus       135 ~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~  214 (462)
T 1ibr_B          135 ANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESE  214 (462)
T ss_dssp             HHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHH
T ss_pred             HHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence            888887  888899999999888876532   334566778888888887  78899998888887543221    1111


Q ss_pred             ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChH--HHHH-hhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhc---
Q 006898          278 RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQ-HILPCVKELSSDSSQHVRSALASVIMGMAPLLG---  351 (626)
Q Consensus       278 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~-~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~---  351 (626)
                      ...+++.+...+.+.++++|..+++++..++...+..  .+.. .+++.+.....+.++.+|..+++.+..++....   
T Consensus       215 ~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~  294 (462)
T 1ibr_B          215 RHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLA  294 (462)
T ss_dssp             HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            1235677777778888889999998888888765432  2234 667777777788888898888888877765420   


Q ss_pred             -----------------H---HHHHHhHHHHHHHhhcC-------CCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHH
Q 006898          352 -----------------K---DATIEQLLPIFLSLLKD-------EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE  404 (626)
Q Consensus       352 -----------------~---~~~~~~l~~~l~~~l~d-------~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~  404 (626)
                                       .   +.+...++|.++..+.+       .++.+|.+|..+|+.++..+|. .....++|.+.+
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~-~~~~~~~~~l~~  373 (462)
T 1ibr_B          295 IEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHVLPFIKE  373 (462)
T ss_dssp             HHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT-THHHHHHHHHHH
T ss_pred             HhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH-HHHHHHHHHHHH
Confidence                             0   11235667777776643       2456788888888888777773 334567777777


Q ss_pred             HhcCCChHHHHHHHHHHHHHHHhhChhh---HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh
Q 006898          405 LAEDRHWRVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP  469 (626)
Q Consensus       405 ~~~~~~~~~r~~~~~~l~~l~~~~~~~~---~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~  469 (626)
                      .+++++|++|.+++.+++.++....++.   ..+.++|.+...+.|+++.||..|+++++.++..+++
T Consensus       374 ~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~  441 (462)
T 1ibr_B          374 HIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE  441 (462)
T ss_dssp             HTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred             HhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccc
Confidence            7777888888888888887776544221   2245677777777777777777777777777776654

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.92  E-value=7e-22  Score=204.70  Aligned_cols=382  Identities=14%  Similarity=0.109  Sum_probs=287.6

Q ss_pred             hcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCC--chhHHHHHHHHHHHhhcccC--------------
Q 006898          171 LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD--QDSVRLLAVEGCAALGKLLE--------------  234 (626)
Q Consensus       171 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~--~~~vr~~a~~~l~~l~~~~~--------------  234 (626)
                      ...+++..+|+.|-+.|..+.... .    +.+.+.+...+.+.  ++.+|..|...|.++.+...              
T Consensus         9 ~~~s~d~~~r~~Ae~~L~~~~~~~-~----~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l   83 (462)
T 1ibr_B            9 KTVSPDRLELEAAQKFLERAAVEN-L----PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAI   83 (462)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTS
T ss_pred             HhcCCCHHHHHHHHHHHHHHHhhC-h----HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcC
Confidence            345778899999999998865521 1    22334444444443  67899999999988864321              


Q ss_pred             chhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCC--hHHHHHHHHHhHHHHHHhhC
Q 006898          235 PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDN--EAEVRIAAAGKVTKFCRILN  312 (626)
Q Consensus       235 ~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~  312 (626)
                      ++.....+...+...+.+++..+ ..++.+++.++...+.......++|.+.+.+.++  ++.+|..++.+++.+++...
T Consensus        84 ~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~  162 (462)
T 1ibr_B           84 DANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID  162 (462)
T ss_dssp             CHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC
T ss_pred             CHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCC
Confidence            12223445566666777777778 8899999999987644322468999999999888  89999999999999998663


Q ss_pred             hH---HHHHhhHHHHHHhccCC--CHHHHHHHHHHHHhhhhhhcHH----HHHHhHHHHHHHhhcCCCHHHHHHHHHhhH
Q 006898          313 PE---LAIQHILPCVKELSSDS--SQHVRSALASVIMGMAPLLGKD----ATIEQLLPIFLSLLKDEFPDVRLNIISKLD  383 (626)
Q Consensus       313 ~~---~~~~~l~~~l~~l~~d~--~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~  383 (626)
                      .+   .+.+.+++.+.+.+++.  ++.||..++++++.+...+...    .+.+.+++.+...+.+.++.+|..++.++.
T Consensus       163 ~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~  242 (462)
T 1ibr_B          163 PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLV  242 (462)
T ss_dssp             GGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred             chhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            32   33466788888888887  7999999999998876544321    123446777888888999999999999999


Q ss_pred             HHHhhhchh--hHHh-hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh-------------------C-hhh---HHHHH
Q 006898          384 QVNQVIGID--LLSQ-SLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-------------------G-VGF---FDDKL  437 (626)
Q Consensus       384 ~~~~~~~~~--~~~~-~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~-------------------~-~~~---~~~~l  437 (626)
                      .+....+..  .+.. .+++.+....++.+..+|..+++++..+++..                   . ...   +.+.+
T Consensus       243 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  322 (462)
T 1ibr_B          243 KIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYL  322 (462)
T ss_dssp             HHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhc
Confidence            998766532  1224 78888888888999999999999999887653                   0 111   23568


Q ss_pred             HHHHHHHhc-------CCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChH-
Q 006898          438 GALCMQWLQ-------DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE-  509 (626)
Q Consensus       438 ~p~l~~~l~-------d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~-  509 (626)
                      +|.++..+.       |.++.+|.+|+.+++.++..+|. .....++|.+.+.+++++|.+|.+++.+++.+++.++.+ 
T Consensus       323 ~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~-~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~  401 (462)
T 1ibr_B          323 VPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQ  401 (462)
T ss_dssp             HHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT-THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTT
T ss_pred             cHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHH
Confidence            888888774       34578999999999999999984 456788999999999999999999999999999876533 


Q ss_pred             --HhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc----hhhhcccchHH
Q 006898          510 --ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----VSTFSVSPFSF  559 (626)
Q Consensus       510 --~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~----~~~~~i~~~l~  559 (626)
                        ...+.++|.+...++|+++.||..|+++|+++....++.    .+.+.+++.|.
T Consensus       402 ~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll  457 (462)
T 1ibr_B          402 LKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLI  457 (462)
T ss_dssp             TCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHH
Confidence              345789999999999999999999999999999988763    23344444444

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.92  E-value=3.5e-22  Score=211.61  Aligned_cols=487  Identities=12%  Similarity=0.109  Sum_probs=347.5

Q ss_pred             ccCCchHHHHHHH-HHHhccccccCCcchhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHh
Q 006898           56 NNDDDDEVLLAMA-EELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLA  134 (626)
Q Consensus        56 ~~~~~~~vr~~~~-~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~  134 (626)
                      +.+++.+.|..+. +.+.....  | .+. ....+-+.+++++++..+|+.+..++..+++.- ++ ....+.+.+.+.+
T Consensus        22 L~~~~~~~k~~~~~kli~~~~~--G-~d~-~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~e-~~~l~~n~l~kdL   95 (591)
T 2vgl_B           22 LNNEKKEKRKEAVKKVIAAMTV--G-KDV-SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ-PD-MAIMAVNSFVKDC   95 (591)
T ss_dssp             TTSSCHHHHHHHHHHHHHHHHT--T-CCC-GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS-HH-HHHTTHHHHGGGS
T ss_pred             HcCCCHHHHHHHHHHHHHHHHC--C-CCh-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-ch-HHHHHHHHHHHHc
Confidence            3445555555444 44443322  3 333 233444455788899999999988888877642 22 2223456666677


Q ss_pred             cCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchh-hhHHHHHHHhhcC
Q 006898          135 AGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLK-TDIMSIFEDLTQD  213 (626)
Q Consensus       135 ~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~-~~ll~~l~~l~~d  213 (626)
                      +++++.+|..|...++.+.   .++..+.+.+.+..++.|+++.||+.|+.++..+....+ +... ..+++.+..+++|
T Consensus        96 ~~~n~~ir~~AL~~L~~i~---~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p-~~~~~~~~~~~l~~lL~d  171 (591)
T 2vgl_B           96 EDPNPLIRALAVRTMGCIR---VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINA-QMVEDQGFLDSLRDLIAD  171 (591)
T ss_dssp             SSSSHHHHHHHHHHHHTCC---SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSC-CCHHHHHHHHHHHHTTSC
T ss_pred             CCCCHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhCh-hhcccccHHHHHHHHhCC
Confidence            8888999999988887764   567788899999999999999999999999999998543 3322 3688999999999


Q ss_pred             CchhHHHHHHHHHHHhhcccCch---hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC-ccccchHHHHHHhc
Q 006898          214 DQDSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE-PTRMDLVPAYVRLL  289 (626)
Q Consensus       214 ~~~~vr~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l  289 (626)
                      +++.|+..|+.++..++...+..   ...+..++.+...+.+.++..+...++.++.++   +.+ .....+++.+..++
T Consensus       172 ~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~---~~~~~~~~~~l~~l~~~l  248 (591)
T 2vgl_B          172 SNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYN---PKDDREAQSICERVTPRL  248 (591)
T ss_dssp             SCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSC---CCSHHHHHHHHHHHTTCS
T ss_pred             CChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHH
Confidence            99999999999999998765432   112233444444455666767777766665433   111 12246888888899


Q ss_pred             CCChHHHHHHHHHhHHHHHHhh--ChH---HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHH
Q 006898          290 RDNEAEVRIAAAGKVTKFCRIL--NPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFL  364 (626)
Q Consensus       290 ~d~~~~vr~~a~~~l~~l~~~~--~~~---~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~  364 (626)
                      ++.++.|+.+|+.++..+...+  +++   ...+.+.+.+..+. ++++.+|..++..++.+....+. .+.+.+ ..+.
T Consensus       249 ~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~-~~~~~~-~~~~  325 (591)
T 2vgl_B          249 SHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPE-ILKQEI-KVFF  325 (591)
T ss_dssp             CSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCS-TTTTCT-TTTS
T ss_pred             cCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChH-HHHHHH-Hhhe
Confidence            9999999999999998886543  122   22345566666665 47899999999999998765332 111111 1122


Q ss_pred             HhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHH
Q 006898          365 SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW  444 (626)
Q Consensus       365 ~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~  444 (626)
                       ++.+++..||..++..+..++..-+    .+.+++.+...+.+.++.+|..++.+++.++..++.  ..+.+++.+..+
T Consensus       326 -~~~~d~~~Ir~~al~~L~~l~~~~n----v~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~--~~~~~v~~Ll~l  398 (591)
T 2vgl_B          326 -VKYNDPIYVKLEKLDIMIRLASQAN----IAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ--SAERCVSTLLDL  398 (591)
T ss_dssp             -CCTTSCHHHHHHHHHHHHHTCCSST----HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHH
T ss_pred             -eccCChHHHHHHHHHHHHHHCChhh----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh--HHHHHHHHHHHH
Confidence             2224449999999998888764432    256888888999999999999999999999876532  245688999999


Q ss_pred             hcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhc-CCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhC
Q 006898          445 LQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINAS  523 (626)
Q Consensus       445 l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~-~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l  523 (626)
                      +.+....|+..+..+++.+......  ....+++.+.+.+. ..++.+|..+++++|..+......   ..++..+....
T Consensus       399 l~~~~~~v~~e~i~~l~~ii~~~p~--~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~~---~~~l~~l~~~~  473 (591)
T 2vgl_B          399 IQTKVNYVVQEAIVVIRDIFRKYPN--KYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNA---DELLESFLEGF  473 (591)
T ss_dssp             HHTCCHHHHHHHHHHHHHHHHHSCS--SCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTTH---HHHHHHHSTTC
T ss_pred             HcccchHHHHHHHHHHHHHHHHCcc--hHHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccCH---HHHHHHHHHhh
Confidence            9999999999999999999877553  24567788888776 467889999999999998766432   46677777777


Q ss_pred             CCCCchHHHHHHHHHHHHHhhhccchhhhcccchHHhhhccC-CCccccc
Q 006898          524 KDRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSFMLYLNV-NNFNVGF  572 (626)
Q Consensus       524 ~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~l~~d-~d~~vr~  572 (626)
                      .+.++.||..++.++.++....+.. ..+.+...+. ....| .|.+||.
T Consensus       474 ~~~~~~vr~~~l~a~~Kl~~~~p~~-~~~~i~~ll~-~~~~d~~d~evrd  521 (591)
T 2vgl_B          474 HDESTQVQLTLLTAIVKLFLKKPSE-TQELVQQVLS-LATQDSDNPDLRD  521 (591)
T ss_dssp             SSSCHHHHHHHHHHHHHHHTTCCST-THHHHHHHHH-HHHTTCCCHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHhcCchH-HHHHHHHHHH-HhhhcCCChHHHH
Confidence            7888999999999999998875432 1234444555 65555 6789999

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.91  E-value=1.8e-22  Score=212.86  Aligned_cols=472  Identities=15%  Similarity=0.085  Sum_probs=269.1

Q ss_pred             HhccccccCCcchhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChh-hHH--HhHHHHHHHHhcCCccchhHHHhh
Q 006898           71 LGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES-DLV--DWYIPLVKRLAAGEWFTARVSACG  147 (626)
Q Consensus        71 l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~-~~~--~~l~~~l~~l~~~~~~~~r~~a~~  147 (626)
                      ++++.++.++.......+|.+..++.++++.+|..|+.+|..++..-+.. .+.  ...++.+                 
T Consensus         2 ~~~l~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L-----------------   64 (529)
T 1jdh_A            2 VVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAI-----------------   64 (529)
T ss_dssp             CCSCC----------CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHH-----------------
T ss_pred             hHHHhhcCchhhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHH-----------------
Confidence            46777787777777888888888888999999999999999988653221 111  0122222                 


Q ss_pred             HhHHhcCCCChHHHHHHHHHHHHhcC-CCCHHHHHHHHHhHHHHHHhhCc--cchhhhHHHHHHHhhcCCchhHHHHHHH
Q 006898          148 LFHIAYPSAPDILKTELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVE  224 (626)
Q Consensus       148 ~l~~~~~~~~~~~~~~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~l~~d~~~~vr~~a~~  224 (626)
                                           ..++. ++++.+|..++.+|..++..-..  .......+|.+.++++++++.++..++.
T Consensus        65 ---------------------v~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~  123 (529)
T 1jdh_A           65 ---------------------VRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAIT  123 (529)
T ss_dssp             ---------------------HHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             ---------------------HHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHH
Confidence                                 22222 23455555555555554432110  0111234556666666666666666666


Q ss_pred             HHHHhhcccCc--hh-hhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh---CCCccccchHHHHHHhcCCCh-HHHH
Q 006898          225 GCAALGKLLEP--QD-CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV---GPEPTRMDLVPAYVRLLRDNE-AEVR  297 (626)
Q Consensus       225 ~l~~l~~~~~~--~~-~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~-~~vr  297 (626)
                      +|..++...+.  .. .....+|.+..++.++++.+|..++.++..++...   .........++.+..++++.+ ...+
T Consensus       124 ~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~  203 (529)
T 1jdh_A          124 TLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLL  203 (529)
T ss_dssp             HHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHH
T ss_pred             HHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHH
Confidence            66666544322  11 12445666666666666666666666665554310   000111234555666655443 3344


Q ss_pred             HHHHHhHHHHHHhhCh--HHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHH
Q 006898          298 IAAAGKVTKFCRILNP--ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVR  375 (626)
Q Consensus       298 ~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr  375 (626)
                      ..+...+..++..-..  .......++.+..++.+.+..++..++.++..++...+........+|.+..++.++++.+|
T Consensus       204 ~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~  283 (529)
T 1jdh_A          204 WTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVV  283 (529)
T ss_dssp             HHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHH
T ss_pred             HHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHH
Confidence            4455555555432111  11223456777777777777777777777777765433222233567777777777777888


Q ss_pred             HHHHHhhHHHHhhhc---hhhHHhhHHHHHHHHhcC--CChHHHHHHHHHHHHHHHhhCh------hhHHHHHHHHHHHH
Q 006898          376 LNIISKLDQVNQVIG---IDLLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGV------GFFDDKLGALCMQW  444 (626)
Q Consensus       376 ~~a~~~L~~~~~~~~---~~~~~~~i~~~l~~~~~~--~~~~~r~~~~~~l~~l~~~~~~------~~~~~~l~p~l~~~  444 (626)
                      ..++.+|+.++..-.   ........++.+.+++.+  .++.+|..++.++..++...+.      .......+|.+..+
T Consensus       284 ~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~l  363 (529)
T 1jdh_A          284 TCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL  363 (529)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHT
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHH
Confidence            877777777754311   011123456666666653  3467777777777777543222      11222346777777


Q ss_pred             hcCCc-hHHHHHHHHHHHHHHHHhCh--HHHhhhhHHHHHhhhcCCChHHHHHHHH----------------------HH
Q 006898          445 LQDKV-YSIRDAAANNLKRLAEEFGP--EWAMQHITPQVLEMINNPHYLYRMTILR----------------------AI  499 (626)
Q Consensus       445 l~d~~-~~VR~~a~~~l~~l~~~~~~--~~~~~~il~~l~~~l~~~~~~vR~~a~~----------------------~l  499 (626)
                      +.++. +.+|..++++++.++..-..  ......++|.+.+++.++++.+|..+++                      ++
T Consensus       364 L~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al  443 (529)
T 1jdh_A          364 LHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGAL  443 (529)
T ss_dssp             TSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHH
T ss_pred             hccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHH
Confidence            77765 47888888887777642111  1223456777777777666666655444                      44


Q ss_pred             HHhccccCh--HHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhc--cchhhhcccchHHhhhccCCCcccccccc
Q 006898          500 SLLAPVMGS--EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD--QSVSTFSVSPFSFMLYLNVNNFNVGFIFA  575 (626)
Q Consensus       500 ~~i~~~~~~--~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~--~~~~~~~i~~~l~~~l~~d~d~~vr~~~~  575 (626)
                      ..++.....  .......+|.+..++.|++++||..++++|+++...-.  ........++.|. .+..++|.+|+.   
T Consensus       444 ~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~-~l~~~~~~~v~~---  519 (529)
T 1jdh_A          444 HILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLT-ELLHSRNEGVAT---  519 (529)
T ss_dssp             HHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHH-HGGGCSSHHHHH---
T ss_pred             HHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHH-HHhcCCCHHHHH---
Confidence            444432111  12334677999999999999999999999999874311  1122346778888 999999999999   


Q ss_pred             cCchhHHHHHHHHHH
Q 006898          576 AFPLVLFSCLALNYC  590 (626)
Q Consensus       576 ~~~~~~~a~~al~~~  590 (626)
                            +|..+|..+
T Consensus       520 ------~a~~aL~~l  528 (529)
T 1jdh_A          520 ------YAAAVLFRM  528 (529)
T ss_dssp             ------HHHHHHHHH
T ss_pred             ------HHHHHHHhc
Confidence                  999998765

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.91  E-value=8.5e-22  Score=214.82  Aligned_cols=484  Identities=14%  Similarity=0.065  Sum_probs=343.6

Q ss_pred             hcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChH--H--HHHHHHHHHH
Q 006898           95 CTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--L--KTELRSIYTQ  170 (626)
Q Consensus        95 ~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~--~--~~~l~~~l~~  170 (626)
                      +.+++..+|..+++.+.....    ..+....+|.+..++.+++..+|..|+..+..++......  .  ...+++.+..
T Consensus       124 L~~~~~~~r~~a~~~l~~~~~----~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~  199 (780)
T 2z6g_A          124 LAEPSQMLKHAVVNLINYQDD----AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR  199 (780)
T ss_dssp             --CCSCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHH
T ss_pred             hcCccHHHHHHHHHHHHhhhH----HHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHH
Confidence            345677888888877764422    2333556777777888888889999999999987753221  1  1356777777


Q ss_pred             hcC-CCCHHHHHHHHHhHHHHHHhhCc--cchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc--hhh-hhhhHH
Q 006898          171 LCQ-DDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--QDC-VAHILP  244 (626)
Q Consensus       171 l~~-d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~-~~~i~~  244 (626)
                      .+. ++++.+|..++.+|..++..-..  .......+|.+..++.++++.+|..|+.+|.+++.....  ..+ ....+|
T Consensus       200 ~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~  279 (780)
T 2z6g_A          200 TMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQ  279 (780)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHH
Confidence            665 45899999999999998764221  112235789999999999999999999999999876543  122 356889


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHh---CCCccccchHHHHHHhcCCChHH-HHHHHHHhHHHHHHhhCh--HHHHH
Q 006898          245 VIVNFSQDKSWRVRYMVANQLYELCEAV---GPEPTRMDLVPAYVRLLRDNEAE-VRIAAAGKVTKFCRILNP--ELAIQ  318 (626)
Q Consensus       245 ~l~~~~~d~~~~vR~~a~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~-vr~~a~~~l~~l~~~~~~--~~~~~  318 (626)
                      .+..++.++++.+|..++.++..++...   .........++.+..++++.+++ .+..+..++..++..-..  .....
T Consensus       280 ~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~  359 (780)
T 2z6g_A          280 KMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEA  359 (780)
T ss_dssp             HHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHT
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHh
Confidence            9999999999999999999888776311   00112235678888888876644 455667777777652221  12234


Q ss_pred             hhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchh---hHH
Q 006898          319 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLS  395 (626)
Q Consensus       319 ~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~---~~~  395 (626)
                      ..+|.+..++.+.+..++..++.++..++...........++|.+..++.+.++.+|..|+.+|+.+...-...   ...
T Consensus       360 g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~  439 (780)
T 2z6g_A          360 GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQ  439 (780)
T ss_dssp             THHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHT
T ss_pred             chHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            56789999999999999999999999988654332223468899999999999999999999999986532111   112


Q ss_pred             hhHHHHHHHHhcC-CCh-HHHHHHHHHHHHHHHhhCh------hhHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHHHH
Q 006898          396 QSLLPAIVELAED-RHW-RVRLAIIEYIPLLASQLGV------GFFDDKLGALCMQWLQDKVY-SIRDAAANNLKRLAEE  466 (626)
Q Consensus       396 ~~i~~~l~~~~~~-~~~-~~r~~~~~~l~~l~~~~~~------~~~~~~l~p~l~~~l~d~~~-~VR~~a~~~l~~l~~~  466 (626)
                      ...++.+.+++.+ .++ .+|..++.++..++...+.      .......+|.+..++.+++. .+|..|+++|+.++..
T Consensus       440 ~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~  519 (780)
T 2z6g_A          440 VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC  519 (780)
T ss_dssp             TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS
T ss_pred             CCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC
Confidence            3567888888865 343 8999999999988653322      12223457888999987775 9999999999999742


Q ss_pred             hC--hHHHhhhhHHHHHhhhcCCC----------------------hHHHHHHHHHHHHhccccChH--HhhhcHHHHHh
Q 006898          467 FG--PEWAMQHITPQVLEMINNPH----------------------YLYRMTILRAISLLAPVMGSE--ITCSRLLPVVI  520 (626)
Q Consensus       467 ~~--~~~~~~~il~~l~~~l~~~~----------------------~~vR~~a~~~l~~i~~~~~~~--~~~~~~l~~l~  520 (626)
                      -.  .......++|.|.+++.+.+                      ..++..++.++++++..-...  ......+|.|.
T Consensus       520 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv  599 (780)
T 2z6g_A          520 PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFV  599 (780)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHH
Confidence            11  11223567788887775543                      346677888888876421111  12456889999


Q ss_pred             hhCCCCCchHHHHHHHHHHHHHhhhccc--hhhhcccchHHhhhccCCCcccccccccCchhHHHHHHHHHHHH
Q 006898          521 NASKDRVPNIKFNVAKVLQSLIPIVDQS--VSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCHR  592 (626)
Q Consensus       521 ~~l~d~~~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~~  592 (626)
                      .++.+++++||..++.+|..+...-...  ......++.|. .+..+++.+||.         +|..||..+..
T Consensus       600 ~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~-~Ll~~~~~~Vr~---------~A~~aL~~l~~  663 (780)
T 2z6g_A          600 QLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLT-ELLHSRNEGVAT---------YAAAVLFRMSE  663 (780)
T ss_dssp             HGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHH-HGGGCSCHHHHH---------HHHHHHHHHHT
T ss_pred             HHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHH-HHHcCCCHHHHH---------HHHHHHHHHHc
Confidence            9999999999999999999986431111  12235778888 899999999999         99999987753

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.90  E-value=1.7e-20  Score=198.90  Aligned_cols=575  Identities=13%  Similarity=0.096  Sum_probs=401.8

Q ss_pred             cHHHHHHHhcCccHHHHHHHHhhHHHHHHhhC---------hH--------hhhhhhcccccc-ccC--CchHHHHHHHH
Q 006898           10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALG---------EE--------RTRKELIPFLSE-NND--DDDEVLLAMAE   69 (626)
Q Consensus        10 ~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~---------~~--------~~~~~l~~~l~~-~~~--~~~~vr~~~~~   69 (626)
                      .++.+.+-|.+++++.-..+...+..+...+.         |+        ...+.++..|.. +.+  -++..|..+..
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~  172 (810)
T 3now_A           93 GVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIE  172 (810)
T ss_dssp             CHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHH
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHH
Confidence            45677778888888777777666665543221         11        122344444444 333  36788999998


Q ss_pred             HHhccccccCC--cchhh---cchHHHhhhhc--C--------cchHHHHHHHHHHHHHHhhcCh----hhHHHhHHHHH
Q 006898           70 ELGVFIPYVGG--VEHAH---VLLPPLETLCT--V--------EETCVRDKAVESLCRIGSQMRE----SDLVDWYIPLV  130 (626)
Q Consensus        70 ~l~~~~~~~~~--~~~~~---~l~~~l~~l~~--~--------~~~~vR~~a~~~l~~i~~~~~~----~~~~~~l~~~l  130 (626)
                      .+-.-+++-..  ...+.   .+..++.-...  +        -.+.+|..|.-++.++.+.+..    +...+.+-.++
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  252 (810)
T 3now_A          173 LITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYI  252 (810)
T ss_dssp             HHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence            88776664321  11111   11112211111  1        1457899999999999999874    33344455556


Q ss_pred             HHHhcCCccchhHHHhhHhHHhcCCCChH-----HHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc-cchhhhHH
Q 006898          131 KRLAAGEWFTARVSACGLFHIAYPSAPDI-----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-AHLKTDIM  204 (626)
Q Consensus       131 ~~l~~~~~~~~r~~a~~~l~~~~~~~~~~-----~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~ll  204 (626)
                      ..............|+..+..+++..++.     ..+..++.+..++.+++..++..|+.+++..+..-.. +.+...-+
T Consensus       253 ~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv  332 (810)
T 3now_A          253 KDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGV  332 (810)
T ss_dssp             HHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHH
T ss_pred             HHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCc
Confidence            55555555556677888888888876653     1346788999999999999999999999997664221 22222234


Q ss_pred             HHHHHhhcCCchhHHHHHHHHHHHhhcccC---c-h----hhhhhhHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHhC-
Q 006898          205 SIFEDLTQDDQDSVRLLAVEGCAALGKLLE---P-Q----DCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVG-  273 (626)
Q Consensus       205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~---~-~----~~~~~i~~~l~~~~~d~--~~~vR~~a~~~l~~l~~~~~-  273 (626)
                      |.+..++.++++.+|..|+.+|..++...+   + .    .-...+++.+.+++.++  +..+|..++.+|..++.... 
T Consensus       333 ~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~v  412 (810)
T 3now_A          333 DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAEC  412 (810)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHH
Confidence            899999998888999999999999875432   1 1    12345678888887777  78899999999998864211 


Q ss_pred             -CCcc-ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC-----------------------------------hHHH
Q 006898          274 -PEPT-RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN-----------------------------------PELA  316 (626)
Q Consensus       274 -~~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-----------------------------------~~~~  316 (626)
                       .... ....+|.++.+++.+++.++..++.+|+.++....                                   ...+
T Consensus       413 k~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vv  492 (810)
T 3now_A          413 KEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLA  492 (810)
T ss_dssp             HHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHH
Confidence             0111 23588999999988889999999999999987321                                   0112


Q ss_pred             HHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcH-H-HHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhH
Q 006898          317 IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK-D-ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL  394 (626)
Q Consensus       317 ~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~-~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~  394 (626)
                      ....+|.+.+++.++++.+|..+++++..++..-.. . ....-.+|.++.++.+.++.+|..|+.+|.+++....++..
T Consensus       493 eaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~  572 (810)
T 3now_A          493 NEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVS  572 (810)
T ss_dssp             HTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             HCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhh
Confidence            235789999999999999999999999999843211 1 12234789999999999999999999999998865444321


Q ss_pred             -----HhhHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHhh---ChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Q 006898          395 -----SQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQL---GVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE  465 (626)
Q Consensus       395 -----~~~i~~~l~~~~~~~-~~~~r~~~~~~l~~l~~~~---~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~  465 (626)
                           ....+|.|.+++.++ +...+..++.++..++..-   .........+|.+..++.+.+..||..|+++++.++.
T Consensus       573 ~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~  652 (810)
T 3now_A          573 FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM  652 (810)
T ss_dssp             TTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT
T ss_pred             hcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence                 124688999998755 4455667888888887542   1122334568889999999999999999999999975


Q ss_pred             HhCh--HHHh-hhhHHHHHhhhcCCChHHHHHHHHHHHHhccccCh---HHhh-hcHHHHHhhhCCCCCchHHHHHHHHH
Q 006898          466 EFGP--EWAM-QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---EITC-SRLLPVVINASKDRVPNIKFNVAKVL  538 (626)
Q Consensus       466 ~~~~--~~~~-~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~---~~~~-~~~l~~l~~~l~d~~~~vR~~a~~~l  538 (626)
                      .-..  .... ...++.|..++..++..+|..|+.+++++......   ..+. ...+|.|..++.+++..+|..|++++
T Consensus       653 ~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL  732 (810)
T 3now_A          653 SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVII  732 (810)
T ss_dssp             SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHH
Confidence            2111  1111 35789999999999999999999999999863221   2233 57899999999999999999999999


Q ss_pred             HHHHhhhcc---chhhhcccchHHhhhccCC---CcccccccccCchhHHHHHHHHHHHHHh
Q 006898          539 QSLIPIVDQ---SVSTFSVSPFSFMLYLNVN---NFNVGFIFAAFPLVLFSCLALNYCHRWW  594 (626)
Q Consensus       539 ~~i~~~~~~---~~~~~~i~~~l~~~l~~d~---d~~vr~~~~~~~~~~~a~~al~~~~~~~  594 (626)
                      .++...-+.   .-.....++.|. .++.++   +.++..         .|.+||+.+....
T Consensus       733 ~NL~~~s~e~~~~l~e~G~i~~L~-~LL~~~d~~~~~i~e---------~Al~aL~~ll~~g  784 (810)
T 3now_A          733 LNMINAGEEIAKKLFETDIMELLS-GLGQLPDDTRAKARE---------VATQCLAAAERYR  784 (810)
T ss_dssp             HHHHTTCHHHHHHHHTSTHHHHHT-TSCCCTTSTTHHHHH---------HHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHCCCHHHHH-HHHhCcccCcHHHHH---------HHHHHHHHHHhCC
Confidence            999863221   133456788888 787655   577777         8888988886543

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.90  E-value=9.4e-21  Score=203.66  Aligned_cols=494  Identities=13%  Similarity=0.062  Sum_probs=341.5

Q ss_pred             cccccCCcchhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhh-HH--HhHHHHHHHHhc-CCccchhHHHhhHh
Q 006898           74 FIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD-LV--DWYIPLVKRLAA-GEWFTARVSACGLF  149 (626)
Q Consensus        74 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~-~~--~~l~~~l~~l~~-~~~~~~r~~a~~~l  149 (626)
                      ++.+.++.......+|.+..++.++++.+|..|+.+|..++....... +.  ...++.+...+. +++..+|..++..+
T Consensus         2 l~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L   81 (644)
T 2z6h_A            2 LINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTL   81 (644)
T ss_dssp             ----------CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred             cccccchhhhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            344445555666778888888888999999999999999988765422 11  234555555554 44778899999888


Q ss_pred             HHhcCCCChH---HHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCcc--c-hhhhHHHHHHHhhcCCchhHHHHHH
Q 006898          150 HIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--H-LKTDIMSIFEDLTQDDQDSVRLLAV  223 (626)
Q Consensus       150 ~~~~~~~~~~---~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~--~-~~~~ll~~l~~l~~d~~~~vr~~a~  223 (626)
                      ..+.......   .....++.+..+++++++.+|..++.+|.+++......  . .....+|.+.+++.++++.++..++
T Consensus        82 ~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~  161 (644)
T 2z6h_A           82 HNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITT  161 (644)
T ss_dssp             HHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHH
T ss_pred             HHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHH
Confidence            8776542110   12347788999999999999999999999999864321  1 2356889999999999999999999


Q ss_pred             HHHHHhhcccCc---hhhhhhhHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhC--CCccccchHHHHHHhcCCChHHHH
Q 006898          224 EGCAALGKLLEP---QDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVG--PEPTRMDLVPAYVRLLRDNEAEVR  297 (626)
Q Consensus       224 ~~l~~l~~~~~~---~~~~~~i~~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr  297 (626)
                      .+|..++...+.   .......++.+..++.+. ...++..++.++..++..-.  ........++.+..++++.++.++
T Consensus       162 ~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~  241 (644)
T 2z6h_A          162 DCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLV  241 (644)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHH
T ss_pred             HHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHH
Confidence            999988853222   112344677777777655 46677888888877763111  001123578899999999999999


Q ss_pred             HHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhc--HH-HHHHhHHHHHHHhhcCC--CH
Q 006898          298 IAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG--KD-ATIEQLLPIFLSLLKDE--FP  372 (626)
Q Consensus       298 ~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~--~~-~~~~~l~~~l~~~l~d~--~~  372 (626)
                      ..++.+|..++...........++|.+.+++.+.++.+|..++.++..++..-.  .. ......++.+..++.+.  .+
T Consensus       242 ~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~  321 (644)
T 2z6h_A          242 QNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRE  321 (644)
T ss_dssp             HHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcH
Confidence            999999999987543333335678999999999999999999999999875321  11 12234678888888753  37


Q ss_pred             HHHHHHHHhhHHHHhhhchh------hHHhhHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHhhC--hhhHHHHHHHHHHH
Q 006898          373 DVRLNIISKLDQVNQVIGID------LLSQSLLPAIVELAEDRH-WRVRLAIIEYIPLLASQLG--VGFFDDKLGALCMQ  443 (626)
Q Consensus       373 ~vr~~a~~~L~~~~~~~~~~------~~~~~i~~~l~~~~~~~~-~~~r~~~~~~l~~l~~~~~--~~~~~~~l~p~l~~  443 (626)
                      .++..++.+|+.+....+.+      ......+|.+.+++.+++ +.+|..++.++..++..-.  .......++|.+..
T Consensus       322 ~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~  401 (644)
T 2z6h_A          322 DITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQ  401 (644)
T ss_dssp             HHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHH
Confidence            99999999999997543321      122457899999998775 8999999999999875321  12233456777777


Q ss_pred             HhcCCch----------------------HHHHHHHHHHHHHHHHhCh--HHHhhhhHHHHHhhhcCCChHHHHHHHHHH
Q 006898          444 WLQDKVY----------------------SIRDAAANNLKRLAEEFGP--EWAMQHITPQVLEMINNPHYLYRMTILRAI  499 (626)
Q Consensus       444 ~l~d~~~----------------------~VR~~a~~~l~~l~~~~~~--~~~~~~il~~l~~~l~~~~~~vR~~a~~~l  499 (626)
                      ++.+.+.                      .++..++.+|..++..-..  .......+|.+.+++.+++..+|..++.++
T Consensus       402 lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL  481 (644)
T 2z6h_A          402 LLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVL  481 (644)
T ss_dssp             HHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             HHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence            7766443                      4555666666666532211  112356789999999999999999999999


Q ss_pred             HHhccccChH--HhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccchhhhc-ccchHHhhhccCCCcc
Q 006898          500 SLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVSTFS-VSPFSFMLYLNVNNFN  569 (626)
Q Consensus       500 ~~i~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~-i~~~l~~~l~~d~d~~  569 (626)
                      .+++..-...  ......++.|..+++++++.||..|+++|+.+...-+.. +... ....+. .+..+.+..
T Consensus       482 ~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~-~~~~~~~~il~-~~~~~~~~~  552 (644)
T 2z6h_A          482 CELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQD-YKKRLSVELTS-SLFRTEPMA  552 (644)
T ss_dssp             HHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHH-HHHHHHHHHHH-HHSCCSCGG
T ss_pred             HHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHh-hhcccchHHHH-HHHhCCCcc
Confidence            9987531111  123446788999999999999999999999997754322 2121 255556 666555433

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.90  E-value=2.1e-19  Score=190.63  Aligned_cols=570  Identities=12%  Similarity=0.060  Sum_probs=392.2

Q ss_pred             HHHHHHHhcC-ccHHHHHHHHhhHHHHHHhhChHhhh---hhh-cccccc-ccCCchHHHHHHHHHHhccccccC-----
Q 006898           11 IAVLIDELKN-DDIQLRLNSIRRLSTIARALGEERTR---KEL-IPFLSE-NNDDDDEVLLAMAEELGVFIPYVG-----   79 (626)
Q Consensus        11 i~~l~~~l~s-~d~~~r~~a~~~l~~i~~~~~~~~~~---~~l-~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~-----   79 (626)
                      +..+..-+++ .|++....|++.+..++.... +++.   .++ +|.+.. +..+++++-.++..++..+...+.     
T Consensus        51 ~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (810)
T 3now_A           51 IAKVASLTKVEKDQDIYVNMVHLVAALCENSV-ERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNK  129 (810)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH-HHHHHHHHHSCHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSS
T ss_pred             HHHHHHHHhccCchhHHHHHHHHHHHHHhccH-HHHHHHHHHcCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccc
Confidence            3444455556 889999999999999976432 2221   111 344555 345677777777766655433221     


Q ss_pred             ---Ccc---------hhhcchHHHhhhhcCc--chHHHHHHHHHHHHHHhhcCh---hhH-HH-hHHHHHHHHhcCC---
Q 006898           80 ---GVE---------HAHVLLPPLETLCTVE--ETCVRDKAVESLCRIGSQMRE---SDL-VD-WYIPLVKRLAAGE---  137 (626)
Q Consensus        80 ---~~~---------~~~~l~~~l~~l~~~~--~~~vR~~a~~~l~~i~~~~~~---~~~-~~-~l~~~l~~l~~~~---  137 (626)
                         +++         ....++..|..++.+.  ....|..++..+.+-..+-..   ..+ .. .+..++.-...-+   
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~  209 (810)
T 3now_A          130 PDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYK  209 (810)
T ss_dssp             TTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSC
T ss_pred             cccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHHHHHHhCCccccccccchhhHhhHHHHHHHHhcCcccc
Confidence               111         2344555555666665  567899888777655432211   111 11 1222332222211   


Q ss_pred             -------ccchhHHHhhHhHHhcCCCCh-----HHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc---cch-hh
Q 006898          138 -------WFTARVSACGLFHIAYPSAPD-----ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHL-KT  201 (626)
Q Consensus       138 -------~~~~r~~a~~~l~~~~~~~~~-----~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~-~~  201 (626)
                             ....|..+.-++..+++....     ...+.+-.++...+...+..-+-.++.++..+......   ..+ ..
T Consensus       210 ~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~  289 (810)
T 3now_A          210 YESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVARE  289 (810)
T ss_dssp             CSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTT
T ss_pred             ccccCCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhcc
Confidence                   356899999999999988762     34444455555566666666666677777777654322   122 34


Q ss_pred             hHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc-hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC----Cc
Q 006898          202 DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP----EP  276 (626)
Q Consensus       202 ~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~----~~  276 (626)
                      ..+|.+..+++++++.++..|+.+++..+..-.. +.+.+.-.|.+..++.+.+..+|..++.+|..++...+.    ..
T Consensus       290 G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~  369 (810)
T 3now_A          290 GILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRP  369 (810)
T ss_dssp             THHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCS
T ss_pred             chHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccc
Confidence            6789999999999999999999999997755222 222223348999999888899999999999888753321    11


Q ss_pred             c----ccchHHHHHHhcCCC--hHHHHHHHHHhHHHHHHhhChH--HHH-HhhHHHHHHhccCCCHHHHHHHHHHHHhhh
Q 006898          277 T----RMDLVPAYVRLLRDN--EAEVRIAAAGKVTKFCRILNPE--LAI-QHILPCVKELSSDSSQHVRSALASVIMGMA  347 (626)
Q Consensus       277 ~----~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~--~~~-~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~  347 (626)
                      +    ...+++.+.+++.++  ++++|..|+++|..++..-...  ... ...+|.|.+++++.+..+...+..+++.++
T Consensus       370 ~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt  449 (810)
T 3now_A          370 FGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLC  449 (810)
T ss_dssp             STTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHT
T ss_pred             hhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHc
Confidence            1    235788899988877  7899999999999987632211  121 467899999988888999999999999998


Q ss_pred             hhhc-----------------------------------HHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhch-
Q 006898          348 PLLG-----------------------------------KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-  391 (626)
Q Consensus       348 ~~~~-----------------------------------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~-  391 (626)
                      ....                                   +.......+|.+..+++.+++.+|..|+++|+.++..-.. 
T Consensus       450 ~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r  529 (810)
T 3now_A          450 NAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELR  529 (810)
T ss_dssp             TCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHH
T ss_pred             CCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH
Confidence            6321                                   0111224789999999999999999999999999743111 


Q ss_pred             -hhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhH-----HHHHHHHHHHHhcCC-chHHHHHHHHHHHHHH
Q 006898          392 -DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF-----DDKLGALCMQWLQDK-VYSIRDAAANNLKRLA  464 (626)
Q Consensus       392 -~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~-----~~~l~p~l~~~l~d~-~~~VR~~a~~~l~~l~  464 (626)
                       .......+|.|..++.+.+...|..+..++..++....+...     ....+|.+..++... ....+..|+.+|..++
T Consensus       530 ~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa  609 (810)
T 3now_A          530 GKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLA  609 (810)
T ss_dssp             HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence             122356789999999999999999999999998865444321     123678888888754 4445668999999987


Q ss_pred             HHhC---hHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccCh-HHhh--hcHHHHHhhhCCCCCchHHHHHHHHH
Q 006898          465 EEFG---PEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS-EITC--SRLLPVVINASKDRVPNIKFNVAKVL  538 (626)
Q Consensus       465 ~~~~---~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~-~~~~--~~~l~~l~~~l~d~~~~vR~~a~~~l  538 (626)
                      ..-.   ........+|.+.+++.+++..+|..|++++++++..-.. ..+.  ...++.|..++..++..+|..|+++|
T Consensus       610 ~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~AL  689 (810)
T 3now_A          610 SMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGAL  689 (810)
T ss_dssp             TSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence            5421   1123356789999999999999999999999999863211 1122  35889999999999999999999999


Q ss_pred             HHHHhhhcc---chhh-hcccchHHhhhccCCCcccccccccCchhHHHHHHHHHHH
Q 006898          539 QSLIPIVDQ---SVST-FSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCH  591 (626)
Q Consensus       539 ~~i~~~~~~---~~~~-~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~  591 (626)
                      +.+......   .... ...+|.|. .++.++|.+++.         .|.+++..+.
T Consensus       690 anLt~~s~~~~~~ii~~~g~I~~Lv-~LL~s~d~~vq~---------~A~~aL~NL~  736 (810)
T 3now_A          690 AIITSVSVKCCEKILAIASWLDILH-TLIANPSPAVQH---------RGIVIILNMI  736 (810)
T ss_dssp             HHHHHHCHHHHHHHHTSTTHHHHHH-HHHTCSSHHHHH---------HHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHcCCHHHHH-HHHCCCCHHHHH---------HHHHHHHHHH
Confidence            999874221   1223 46788898 899999999999         8998887764

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.90  E-value=4.4e-21  Score=197.92  Aligned_cols=379  Identities=11%  Similarity=0.073  Sum_probs=290.1

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccc----hhh-hHHHHHHHhhcCC-chhHHHHHHHHHHHhhcccCc---
Q 006898          165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH----LKT-DIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEP---  235 (626)
Q Consensus       165 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~-~ll~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~---  235 (626)
                      ++.+...++++++.+|..++..+..+......+.    ... .++|.+.+++.++ ++.+|..++.++..++...+.   
T Consensus        22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~  101 (450)
T 2jdq_A           22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR  101 (450)
T ss_dssp             CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            5666677778889999999999999865322211    223 6889999988888 889999999999998864332   


Q ss_pred             hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHHhh
Q 006898          236 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRIL  311 (626)
Q Consensus       236 ~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~  311 (626)
                      ......++|.+..++.++++.+|..++.+|+.++....   ........++.+..++++ .++++|..++.+++.++...
T Consensus       102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~  181 (450)
T 2jdq_A          102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK  181 (450)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred             HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence            12235689999999999999999999999999885311   011124578999999985 78999999999999998643


Q ss_pred             Ch---HHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcH---HHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHH
Q 006898          312 NP---ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV  385 (626)
Q Consensus       312 ~~---~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~  385 (626)
                      ++   ......++|.+.+++.+.++.+|..++.++..++.....   ......++|.+..++.++++.+|..++.+|+.+
T Consensus       182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  261 (450)
T 2jdq_A          182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI  261 (450)
T ss_dssp             SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence            11   122367889999999999999999999999998864321   112335789999999999999999999999998


Q ss_pred             Hhhhchh---hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh---hhHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 006898          386 NQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANN  459 (626)
Q Consensus       386 ~~~~~~~---~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~VR~~a~~~  459 (626)
                      ....+..   .....++|.+.+++.++++.+|..++.+++.++.....   ......++|.+..++.|+++.||..|+.+
T Consensus       262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~  341 (450)
T 2jdq_A          262 VTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWA  341 (450)
T ss_dssp             TTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             hhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence            7643221   12236889999999999999999999999998753211   12234688999999999999999999999


Q ss_pred             HHHHHHHhChH----HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChH---------HhhhcH-----HHHHhh
Q 006898          460 LKRLAEEFGPE----WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---------ITCSRL-----LPVVIN  521 (626)
Q Consensus       460 l~~l~~~~~~~----~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~---------~~~~~~-----l~~l~~  521 (626)
                      ++.++....++    .....++|.+.+++.++++.+|..++.++.+++...+..         .+...+     ++.+..
T Consensus       342 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~  421 (450)
T 2jdq_A          342 ITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEF  421 (450)
T ss_dssp             HHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHH
Confidence            99998764433    123568999999999999999999999999998643321         122222     567777


Q ss_pred             hCCCCCchHHHHHHHHHHHHHh
Q 006898          522 ASKDRVPNIKFNVAKVLQSLIP  543 (626)
Q Consensus       522 ~l~d~~~~vR~~a~~~l~~i~~  543 (626)
                      +..+++..||..|..++..+..
T Consensus       422 l~~~~~~~v~~~a~~~l~~~~~  443 (450)
T 2jdq_A          422 LQSHENQEIYQKAFDLIEHYFG  443 (450)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHcCCCHHHHHHHHHHHHHHCC
Confidence            8888889999999999988764

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.89  E-value=1.1e-20  Score=206.13  Aligned_cols=493  Identities=12%  Similarity=0.041  Sum_probs=326.2

Q ss_pred             HHHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhcccccc-ccCCchHHHHHHHHHHhccccccCCcc-h--hhc
Q 006898           11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVE-H--AHV   86 (626)
Q Consensus        11 i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~-~--~~~   86 (626)
                      +..+++.|++++...|..+.+.+......    ......+|.|.. +.++++.||..++.+|+++........ .  .+.
T Consensus       117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~~----~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~  192 (780)
T 2z6g_A          117 HPTNVQRLAEPSQMLKHAVVNLINYQDDA----ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQ  192 (780)
T ss_dssp             ---------CCSCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHH
T ss_pred             HHHHHHHhcCccHHHHHHHHHHHHhhhHH----HHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccC
Confidence            57899999999999999888877755321    112333444444 347789999999999999876321110 1  123


Q ss_pred             chHHHhhhh-cCcchHHHHHHHHHHHHHHhhcCh--hhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChH---H
Q 006898           87 LLPPLETLC-TVEETCVRDKAVESLCRIGSQMRE--SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---L  160 (626)
Q Consensus        87 l~~~l~~l~-~~~~~~vR~~a~~~l~~i~~~~~~--~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~---~  160 (626)
                      +++.+..++ +++++.+|..|+.+|..+...-..  .......+|.+..++.+.+..+|..|+.++..++......   .
T Consensus       193 ~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v  272 (780)
T 2z6g_A          193 MVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAV  272 (780)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHH
T ss_pred             hHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHH
Confidence            455544444 455889999999999998765322  1222347888889999888899999999999987654331   2


Q ss_pred             -HHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc---cchhhhHHHHHHHhhcCCchh-HHHHHHHHHHHhhcccCc
Q 006898          161 -KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDS-VRLLAVEGCAALGKLLEP  235 (626)
Q Consensus       161 -~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~l~~d~~~~-vr~~a~~~l~~l~~~~~~  235 (626)
                       ....++.+..++.++++.+|..++.++..++.....   .......++.+..++.+.+++ .+..+..++..++.....
T Consensus       273 ~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~  352 (780)
T 2z6g_A          273 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN  352 (780)
T ss_dssp             HHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTH
T ss_pred             HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHH
Confidence             246788999999999999999999999987742110   112234567777888777654 455678888877753221


Q ss_pred             --hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCh
Q 006898          236 --QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP  313 (626)
Q Consensus       236 --~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  313 (626)
                        ......+++.+..++.+.+..++..++.++..++...........++|.+..++++.++++|..|+.+|..++..-..
T Consensus       353 ~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~  432 (780)
T 2z6g_A          353 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK  432 (780)
T ss_dssp             HHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH
T ss_pred             HHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence              122345788999999999999999999999999876544434457899999999999999999999999988763211


Q ss_pred             H---HHHHhhHHHHHHhccC-CC-HHHHHHHHHHHHhhhhhhcHH------HHHHhHHHHHHHhhcCCC-HHHHHHHHHh
Q 006898          314 E---LAIQHILPCVKELSSD-SS-QHVRSALASVIMGMAPLLGKD------ATIEQLLPIFLSLLKDEF-PDVRLNIISK  381 (626)
Q Consensus       314 ~---~~~~~l~~~l~~l~~d-~~-~~vr~~~~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~d~~-~~vr~~a~~~  381 (626)
                      .   ......++.+.+++.+ .+ ..+|..++.+++.++...+..      ......+|.+..++.+.+ +.+|..++.+
T Consensus       433 ~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~a  512 (780)
T 2z6g_A          433 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL  512 (780)
T ss_dssp             HHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHH
Confidence            1   1113456777776654 23 489999999999997543321      122346888999998776 4999999999


Q ss_pred             hHHHHhhhch--hhHHhhHHHHHHHHhcCCChH----------------------HHHHHHHHHHHHHHhhCh--hhHHH
Q 006898          382 LDQVNQVIGI--DLLSQSLLPAIVELAEDRHWR----------------------VRLAIIEYIPLLASQLGV--GFFDD  435 (626)
Q Consensus       382 L~~~~~~~~~--~~~~~~i~~~l~~~~~~~~~~----------------------~r~~~~~~l~~l~~~~~~--~~~~~  435 (626)
                      |+++...-..  ......++|.+.+++.+.++.                      ++..++.++..++.....  .....
T Consensus       513 L~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~  592 (780)
T 2z6g_A          513 IRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGL  592 (780)
T ss_dssp             HHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHT
T ss_pred             HHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHC
Confidence            9998742211  112245778887777654433                      444555555555421100  01123


Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh--ChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccC
Q 006898          436 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEF--GPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG  507 (626)
Q Consensus       436 ~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~--~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~  507 (626)
                      ..+|.+..++.+++..||..|+.+|+.+...-  .........++.|.+++.+++..+|..|+.++.++...-+
T Consensus       593 ~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~  666 (780)
T 2z6g_A          593 NTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP  666 (780)
T ss_dssp             CCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence            35677888888888888888888887775220  0011123467777888888888888888888888776443

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.89  E-value=8.2e-21  Score=199.61  Aligned_cols=380  Identities=11%  Similarity=0.081  Sum_probs=266.5

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCcc----chhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhhcccCc---h
Q 006898          165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA----HLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEP---Q  236 (626)
Q Consensus       165 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~ll~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~---~  236 (626)
                      ++.+...+.++++.+|..++..|..+......+    .....++|.+..++.++ ++.+|..|+.+|..++...+.   .
T Consensus        89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  168 (530)
T 1wa5_B           89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV  168 (530)
T ss_dssp             HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            344455556666777777777777765432221    11234677777777776 677888888888777764322   1


Q ss_pred             hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh---CCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC-
Q 006898          237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV---GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN-  312 (626)
Q Consensus       237 ~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-  312 (626)
                      .....++|.+..++.++++.+|..++.+|+.++...   .........+|.+..++.+.+++++..++.+|..++..-+ 
T Consensus       169 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~  248 (530)
T 1wa5_B          169 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKP  248 (530)
T ss_dssp             HHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSS
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCC
Confidence            122456777777777778888888888888776421   0011123577888888888778888888888888875431 


Q ss_pred             --hHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcH---HHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHh
Q 006898          313 --PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ  387 (626)
Q Consensus       313 --~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~  387 (626)
                        .......++|.+..++.+.++.+|..++.++..++...+.   ......++|.+..++.+.++.+|..|+.+|+.++.
T Consensus       249 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~  328 (530)
T 1wa5_B          249 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT  328 (530)
T ss_dssp             CCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHc
Confidence              1233466788888888888888888888888888753221   11223567888888888888888888888888864


Q ss_pred             hhch---hhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh---hhHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 006898          388 VIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNLK  461 (626)
Q Consensus       388 ~~~~---~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~  461 (626)
                      ..+.   ..+...++|.+..++.++++.+|..++.+++.++.....   ..+...++|.+..++.+++..+|..|+++|+
T Consensus       329 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~  408 (530)
T 1wa5_B          329 GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAIS  408 (530)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            3211   122246788888888888899999999988888753211   1223457888888998899999999999999


Q ss_pred             HHHHHhCh--H----HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChH--------------HhhhcHHHHHhh
Q 006898          462 RLAEEFGP--E----WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE--------------ITCSRLLPVVIN  521 (626)
Q Consensus       462 ~l~~~~~~--~----~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~--------------~~~~~~l~~l~~  521 (626)
                      .++...++  +    .....++|.+..++.++++.+|..++.++.++....+..              ......++.|..
T Consensus       409 ~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~  488 (530)
T 1wa5_B          409 NASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFN  488 (530)
T ss_dssp             HHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHG
T ss_pred             HHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHH
Confidence            99886543  2    223568999999999999999999999999988644321              112345778888


Q ss_pred             hCCCCCchHHHHHHHHHHHHHhh
Q 006898          522 ASKDRVPNIKFNVAKVLQSLIPI  544 (626)
Q Consensus       522 ~l~d~~~~vR~~a~~~l~~i~~~  544 (626)
                      +..+++..|+..|..+|..+...
T Consensus       489 L~~~~~~~v~~~a~~il~~~~~~  511 (530)
T 1wa5_B          489 CQQNENDKIYEKAYKIIETYFGE  511 (530)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHSSS
T ss_pred             HHcCCCHHHHHHHHHHHHHHCCc
Confidence            99999999999999999887754

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.89  E-value=8.7e-21  Score=199.45  Aligned_cols=380  Identities=10%  Similarity=0.040  Sum_probs=294.3

Q ss_pred             hHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc----hhhhhhhHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhC---
Q 006898          202 DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVG---  273 (626)
Q Consensus       202 ~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~i~~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~---  273 (626)
                      ..++.+...+.++++.+|..|+..+..+......    ......++|.+..++.++ ++.+|..++.+|+.++....   
T Consensus        87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~  166 (530)
T 1wa5_B           87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT  166 (530)
T ss_dssp             CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence            3567777788888899999999999998765322    123456899999999987 89999999999998875211   


Q ss_pred             CCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC---hHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhh
Q 006898          274 PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN---PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL  350 (626)
Q Consensus       274 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~  350 (626)
                      ........+|.+..++++.++++|..|+.+|+.++....   .......++|.+..++.+.++.+|..++.++..++...
T Consensus       167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~  246 (530)
T 1wa5_B          167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK  246 (530)
T ss_dssp             HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Confidence            111124678999999999999999999999999986321   11233567899999999999999999999999998543


Q ss_pred             ---cHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhch---hhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 006898          351 ---GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL  424 (626)
Q Consensus       351 ---~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~---~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l  424 (626)
                         ........++|.+..++.+.++.+|..++.+|+.+......   ......++|.+.+++.++++.+|..++.+++.+
T Consensus       247 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l  326 (530)
T 1wa5_B          247 KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI  326 (530)
T ss_dssp             SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHH
Confidence               12334567899999999999999999999999999754221   112236789999999999999999999999998


Q ss_pred             HHhhC---hhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh---HHHhhhhHHHHHhhhcCCChHHHHHHHHH
Q 006898          425 ASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRA  498 (626)
Q Consensus       425 ~~~~~---~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~l~~~~~~vR~~a~~~  498 (626)
                      +...+   .......++|.+..++.++++.+|..|+++|+.++.....   ......++|.+.+++.++++.+|..++.+
T Consensus       327 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~a  406 (530)
T 1wa5_B          327 VTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWA  406 (530)
T ss_dssp             TTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence            75322   1223346889999999999999999999999999753111   11235689999999999999999999999


Q ss_pred             HHHhccccCh--H----HhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhcc---------chh-----hhcccchH
Q 006898          499 ISLLAPVMGS--E----ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---------SVS-----TFSVSPFS  558 (626)
Q Consensus       499 l~~i~~~~~~--~----~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~---------~~~-----~~~i~~~l  558 (626)
                      +++++...++  +    .....++|.|..++.++++.||..++++|..+....+.         ..+     ....++.|
T Consensus       407 L~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L  486 (530)
T 1wa5_B          407 ISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKI  486 (530)
T ss_dssp             HHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHH
T ss_pred             HHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHH
Confidence            9999875443  2    23456899999999999999999999999999876432         111     12346677


Q ss_pred             HhhhccCCCcccccccccCchhHHHHHHHHHHH
Q 006898          559 FMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCH  591 (626)
Q Consensus       559 ~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~  591 (626)
                      . .+..+++.+|+.         .|..++..+.
T Consensus       487 ~-~L~~~~~~~v~~---------~a~~il~~~~  509 (530)
T 1wa5_B          487 F-NCQQNENDKIYE---------KAYKIIETYF  509 (530)
T ss_dssp             H-GGGGCSCHHHHH---------HHHHHHHHHS
T ss_pred             H-HHHcCCCHHHHH---------HHHHHHHHHC
Confidence            7 888999999999         7888777664

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.89  E-value=2e-20  Score=193.00  Aligned_cols=340  Identities=11%  Similarity=0.046  Sum_probs=257.0

Q ss_pred             hHHHhhhhcCcchHHHHHHHHHHHHHHhh-cCh---hhHHH-hHHHHHHHHhcCC-ccchhHHHhhHhHHhcCCCChH--
Q 006898           88 LPPLETLCTVEETCVRDKAVESLCRIGSQ-MRE---SDLVD-WYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDI--  159 (626)
Q Consensus        88 ~~~l~~l~~~~~~~vR~~a~~~l~~i~~~-~~~---~~~~~-~l~~~l~~l~~~~-~~~~r~~a~~~l~~~~~~~~~~--  159 (626)
                      ++.+...++++++.+|..|+.++..+... ..+   ..+.. .++|.+..++.++ ++.+|..++.++..++...++.  
T Consensus        22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~  101 (450)
T 2jdq_A           22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR  101 (450)
T ss_dssp             CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            55555566778888999999999987652 221   22233 5788888887777 7889999999999988765432  


Q ss_pred             --HHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc---cchhhhHHHHHHHhhcC-CchhHHHHHHHHHHHhhccc
Q 006898          160 --LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLL  233 (626)
Q Consensus       160 --~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~  233 (626)
                        ....+++.+..+++++++.+|..++.+|+.++...+.   ......+++.+..++.+ +++.+|..++.++..++...
T Consensus       102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~  181 (450)
T 2jdq_A          102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK  181 (450)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred             HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence              2246889999999999999999999999999874321   11223578888888885 68899999999999999764


Q ss_pred             -Cc--hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC---CccccchHHHHHHhcCCChHHHHHHHHHhHHHH
Q 006898          234 -EP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKF  307 (626)
Q Consensus       234 -~~--~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l  307 (626)
                       +.  ......++|.+..++.+.++.+|..++.+++.++.....   ......++|.+..++.++++++|..++.+++.+
T Consensus       182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  261 (450)
T 2jdq_A          182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI  261 (450)
T ss_dssp             SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence             21  334577899999999999999999999999988742110   011245889999999999999999999999998


Q ss_pred             HHhhChH---HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcH---HHHHHhHHHHHHHhhcCCCHHHHHHHHHh
Q 006898          308 CRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISK  381 (626)
Q Consensus       308 ~~~~~~~---~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~  381 (626)
                      +...+..   .....++|.+.+++.++++.+|..++.+++.++.....   ......++|.+..++.+.++.+|..++.+
T Consensus       262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~  341 (450)
T 2jdq_A          262 VTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWA  341 (450)
T ss_dssp             TTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             hhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence            7643211   12235789999999999999999999999999853211   11224688999999999999999999999


Q ss_pred             hHHHHhhhchhh----HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHh
Q 006898          382 LDQVNQVIGIDL----LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ  427 (626)
Q Consensus       382 L~~~~~~~~~~~----~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~  427 (626)
                      |+.+.....++.    ....++|.+.++++++++.+|..++.++..++..
T Consensus       342 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  391 (450)
T 2jdq_A          342 ITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL  391 (450)
T ss_dssp             HHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            999876533322    2245778888888888888888888888877653

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.89  E-value=1.1e-20  Score=202.99  Aligned_cols=459  Identities=14%  Similarity=0.056  Sum_probs=333.9

Q ss_pred             HHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHH----HHHHHHHHHHhcCC-CCHHHHHHHHHhHHHHHHhhCc-
Q 006898          123 VDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDIL----KTELRSIYTQLCQD-DMPMVRRSAASNLGKFAATVEP-  196 (626)
Q Consensus       123 ~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~----~~~l~~~l~~l~~d-~~~~vR~~a~~~l~~l~~~~~~-  196 (626)
                      ....+|.+..++.+++..+|..|+..++.++.......    ....++.+...+.+ +++.+|..++.+|..++..... 
T Consensus        12 ~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~   91 (644)
T 2z6h_A           12 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL   91 (644)
T ss_dssp             CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred             hhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH
Confidence            33467778888888888999999999999987665321    13567777777654 5899999999999987754221 


Q ss_pred             -cchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc--h-hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Q 006898          197 -AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP--Q-DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV  272 (626)
Q Consensus       197 -~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~  272 (626)
                       .......+|.+.++++++++.+|..|+.+|.+++.....  . ......+|.+..++.++++.++..++.+|..++...
T Consensus        92 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~  171 (644)
T 2z6h_A           92 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN  171 (644)
T ss_dssp             HHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcC
Confidence             112235789999999999999999999999999876543  1 124678999999999999999999999998887421


Q ss_pred             C---CCccccchHHHHHHhcCCCh-HHHHHHHHHhHHHHHHhhChH--HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhh
Q 006898          273 G---PEPTRMDLVPAYVRLLRDNE-AEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGM  346 (626)
Q Consensus       273 ~---~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l  346 (626)
                      +   ........++.+..++++.+ ..++..++.+|..++..-...  ......++.+..++.+.+..++..++.++..+
T Consensus       172 ~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL  251 (644)
T 2z6h_A          172 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL  251 (644)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            0   01122356888888887655 567778888887776422211  22345688899999999999999999999999


Q ss_pred             hhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhch---hhHHhhHHHHHHHHhcCC--ChHHHHHHHHHH
Q 006898          347 APLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDR--HWRVRLAIIEYI  421 (626)
Q Consensus       347 ~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~---~~~~~~i~~~l~~~~~~~--~~~~r~~~~~~l  421 (626)
                      +...........++|.+..++.+.++.+|..++.+|..+...-..   .......++.+.+++.+.  .+.+|..++.++
T Consensus       252 ~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL  331 (644)
T 2z6h_A          252 SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  331 (644)
T ss_dssp             GGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHH
Confidence            865433223346889999999999999999999999998763211   112245788888888653  379999999999


Q ss_pred             HHHHHhhChh------hHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHhCh--HHHhhhhHHHHHhhhcCCC----
Q 006898          422 PLLASQLGVG------FFDDKLGALCMQWLQDKV-YSIRDAAANNLKRLAEEFGP--EWAMQHITPQVLEMINNPH----  488 (626)
Q Consensus       422 ~~l~~~~~~~------~~~~~l~p~l~~~l~d~~-~~VR~~a~~~l~~l~~~~~~--~~~~~~il~~l~~~l~~~~----  488 (626)
                      ..++...+..      ......+|.+..++.++. ..+|..++++++.++..-..  ......++|.+.+++.+++    
T Consensus       332 ~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr  411 (644)
T 2z6h_A          332 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQ  411 (644)
T ss_dssp             HHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHT
T ss_pred             HHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhh
Confidence            9997533321      223356888999998875 69999999999998743111  1234567888888776543    


Q ss_pred             ------------------hHHHHHHHHHHHHhccccChH--HhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc
Q 006898          489 ------------------YLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS  548 (626)
Q Consensus       489 ------------------~~vR~~a~~~l~~i~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~  548 (626)
                                        ..++..++.++..++......  ......+|.|..++.+.++++|..++.+|.++...-...
T Consensus       412 ~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~  491 (644)
T 2z6h_A          412 RRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAA  491 (644)
T ss_dssp             TC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHH
T ss_pred             hHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHH
Confidence                              345667777777776532211  124568899999999999999999999999987531111


Q ss_pred             --hhhhcccchHHhhhccCCCcccccccccCchhHHHHHHHHHHH
Q 006898          549 --VSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCH  591 (626)
Q Consensus       549 --~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~  591 (626)
                        ......++.|. .+..+++.+||.         +|..+|..+.
T Consensus       492 ~~i~~~g~l~~L~-~ll~~~~~~vr~---------~A~~aL~~l~  526 (644)
T 2z6h_A          492 EAIEAEGATAPLT-ELLHSRNEGVAT---------YAAAVLFRMS  526 (644)
T ss_dssp             HHHHHTTCHHHHH-HHTTCSCHHHHH---------HHHHHHHHHT
T ss_pred             HHHHHcCChhHHH-HHHcCCCHHHHH---------HHHHHHHHHh
Confidence              12235677888 899999999999         8888887764

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.87  E-value=4.6e-20  Score=194.48  Aligned_cols=476  Identities=12%  Similarity=0.051  Sum_probs=312.2

Q ss_pred             cccHHHHHHHhcCccHHHHHHHHhhHHHHHHhhChH-hhh--hhhcccccc-cc-CCchHHHHHHHHHHhccccccCCc-
Q 006898            8 LYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEE-RTR--KELIPFLSE-NN-DDDDEVLLAMAEELGVFIPYVGGV-   81 (626)
Q Consensus         8 ~~~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~-~~~--~~l~~~l~~-~~-~~~~~vr~~~~~~l~~~~~~~~~~-   81 (626)
                      ..-++.|++.++++|+.+|..|...|..++..-... ...  ...+|.+.. +. ++++++|..++..|.++...-... 
T Consensus        16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~   95 (529)
T 1jdh_A           16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL   95 (529)
T ss_dssp             -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred             HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHH
Confidence            356888999999999999999999999987532111 011  134455544 32 458899999999999876521100 


Q ss_pred             -chhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcCh--hh-HHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCC
Q 006898           82 -EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE--SD-LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP  157 (626)
Q Consensus        82 -~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~--~~-~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~  157 (626)
                       ......+|.+..++.++++.+|..|+.+|..++..-+.  .. .....+|.+..++.++++.+|..++..+..+....+
T Consensus        96 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~  175 (529)
T 1jdh_A           96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ  175 (529)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCH
Confidence             11234677788888888999999999999999886433  22 235678888899998888888888888887765432


Q ss_pred             hH----HHHHHHHHHHHhcCCCC-HHHHHHHHHhHHHHHHhhCc--cchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhh
Q 006898          158 DI----LKTELRSIYTQLCQDDM-PMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALG  230 (626)
Q Consensus       158 ~~----~~~~l~~~l~~l~~d~~-~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~  230 (626)
                      +.    .....++.+..++.+.+ ..++..++.++..++..-..  .......++.+..++.++++.++..++.++..++
T Consensus       176 ~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~  255 (529)
T 1jdh_A          176 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS  255 (529)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHh
Confidence            21    11234556666665443 55667778888877642211  1122357888999999999999999999999999


Q ss_pred             cccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCC--ChHHHHHHHHHhHH
Q 006898          231 KLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRD--NEAEVRIAAAGKVT  305 (626)
Q Consensus       231 ~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~  305 (626)
                      ...+.......++|.+.+++.++++.+|..++.+++.++..-.   ........++.+..++.+  .+++++..++.+|+
T Consensus       256 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~  335 (529)
T 1jdh_A          256 DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR  335 (529)
T ss_dssp             TTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHH
Confidence            8765544456789999999999999999999999998864210   001123467888888864  34799999999999


Q ss_pred             HHHHhhCh------HHHHHhhHHHHHHhccCCC-HHHHHHHHHHHHhhhhhhcH--HHHHHhHHHHHHHhhcCCCHHHHH
Q 006898          306 KFCRILNP------ELAIQHILPCVKELSSDSS-QHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRL  376 (626)
Q Consensus       306 ~l~~~~~~------~~~~~~l~~~l~~l~~d~~-~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~  376 (626)
                      .++...+.      .......+|.+.+++.+++ +.+|..++.+++.++..-..  ......++|.+..++.+.++.+|.
T Consensus       336 nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~  415 (529)
T 1jdh_A          336 HLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQR  415 (529)
T ss_dssp             HHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-
T ss_pred             HHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHH
Confidence            98654222      1223356888899888776 79999999999998853221  122345789999999988899999


Q ss_pred             HHHHhhHH--HHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC--hhhHHHHHHHHHHHHhcCCchHH
Q 006898          377 NIISKLDQ--VNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VGFFDDKLGALCMQWLQDKVYSI  452 (626)
Q Consensus       377 ~a~~~L~~--~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~--~~~~~~~l~p~l~~~l~d~~~~V  452 (626)
                      .++.+++.  +......+                   .++..++.++..++....  ........+|.+..++.|++.+|
T Consensus       416 ~a~~~l~n~~~~~~~~~~-------------------~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v  476 (529)
T 1jdh_A          416 RTSMGGTQQQFVEGVRME-------------------EIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENI  476 (529)
T ss_dssp             ----------CBTTBCHH-------------------HHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHH
T ss_pred             HHhcccCchhhhccccHH-------------------HHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHH
Confidence            99988876  22211111                   222333444444332110  01122345678888889999999


Q ss_pred             HHHHHHHHHHHHHH--hChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHh
Q 006898          453 RDAAANNLKRLAEE--FGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLL  502 (626)
Q Consensus       453 R~~a~~~l~~l~~~--~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i  502 (626)
                      |..++.+++.+...  ..........++.+.+++.+++..+|..+..++.++
T Consensus       477 ~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l  528 (529)
T 1jdh_A          477 QRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence            99999888887521  000011234456666666666666666666666554

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.87  E-value=1.5e-19  Score=190.12  Aligned_cols=380  Identities=11%  Similarity=0.084  Sum_probs=285.3

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCcc----chhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhhcccCc---h
Q 006898          165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA----HLKTDIMSIFEDLTQDDQ-DSVRLLAVEGCAALGKLLEP---Q  236 (626)
Q Consensus       165 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~ll~~l~~l~~d~~-~~vr~~a~~~l~~l~~~~~~---~  236 (626)
                      ++.+...+.++++.+|..|+.++..++.....+    .....++|.+.+++.+++ +.+|..|+.+|..++...+.   .
T Consensus        76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  155 (528)
T 4b8j_A           76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKV  155 (528)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            455666667778889999999998887654321    123457888888888876 88999999999988864332   1


Q ss_pred             hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhc-CCChHHHHHHHHHhHHHHHHhhC
Q 006898          237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLL-RDNEAEVRIAAAGKVTKFCRILN  312 (626)
Q Consensus       237 ~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~  312 (626)
                      ......+|.+..++.++++.+|..++.+|+.++....   ........++.++.++ .+.++.++..++.+|..++...+
T Consensus       156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~  235 (528)
T 4b8j_A          156 VIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKP  235 (528)
T ss_dssp             HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSS
T ss_pred             HHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence            1234578888888888999999999999998875311   0111235788888888 67788999999999999887532


Q ss_pred             --hHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHH---HHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHh
Q 006898          313 --PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ  387 (626)
Q Consensus       313 --~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~  387 (626)
                        .......++|.+.+++.+.++.++..++.++..++......   .....++|.+..++.+.++.++..|+.+|+.++.
T Consensus       236 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~  315 (528)
T 4b8j_A          236 QPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVT  315 (528)
T ss_dssp             CCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHc
Confidence              22334678899999999999999999999999988543221   1223578899999999999999999999999875


Q ss_pred             hhch---hhHHhhHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHhhCh---hhHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 006898          388 VIGI---DLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNL  460 (626)
Q Consensus       388 ~~~~---~~~~~~i~~~l~~~~~~~-~~~~r~~~~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l  460 (626)
                      ....   ..+...++|.+.+++.++ ++.+|..++.++..++.....   ..+...++|.+..++.+.+..+|..|+.+|
T Consensus       316 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL  395 (528)
T 4b8j_A          316 GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAI  395 (528)
T ss_dssp             SCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence            3221   112245789999999888 899999999999999863211   122345688999999999999999999999


Q ss_pred             HHHHHHhChHH----HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChH---------H-----hhhcHHHHHhhh
Q 006898          461 KRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---------I-----TCSRLLPVVINA  522 (626)
Q Consensus       461 ~~l~~~~~~~~----~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~---------~-----~~~~~l~~l~~~  522 (626)
                      +.++...+++.    ....+++.+..++.++++.++..++.++.+++...+..         .     .....++.+..+
T Consensus       396 ~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L  475 (528)
T 4b8j_A          396 SNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENL  475 (528)
T ss_dssp             HHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHG
T ss_pred             HHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHH
Confidence            99988744332    23568999999999999999999999999998643220         1     123356778888


Q ss_pred             CCCCCchHHHHHHHHHHHHHhh
Q 006898          523 SKDRVPNIKFNVAKVLQSLIPI  544 (626)
Q Consensus       523 l~d~~~~vR~~a~~~l~~i~~~  544 (626)
                      .++++++|+..|..++..+...
T Consensus       476 ~~~~~~~v~~~a~~il~~~~~~  497 (528)
T 4b8j_A          476 QSHDNNEIYEKAVKILEAYWMD  497 (528)
T ss_dssp             GGCSSHHHHHHHHHHHHHHCC-
T ss_pred             HcCCCHHHHHHHHHHHHHHCCC
Confidence            8999999999999999988765

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.87  E-value=1.6e-19  Score=191.83  Aligned_cols=506  Identities=11%  Similarity=0.038  Sum_probs=335.1

Q ss_pred             HHHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhc-cccccccCCchHHHHHHHHHHhccccccCCcchhhcchH
Q 006898           11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELI-PFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP   89 (626)
Q Consensus        11 i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~   89 (626)
                      +..+-+.|+++|...|..+++.+-.+ ..+|.+.  ..+. ..+..+.+++.+.|+..--.+..+++.  .++....+.+
T Consensus        36 ~~~ir~~l~~~~~~~k~~~l~kli~~-~~~G~d~--~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~--~~e~~~l~in  110 (618)
T 1w63_A           36 CAAIRSSFREEDNTYRCRNVAKLLYM-HMLGYPA--HFGQLECLKLIASQKFTDKRIGYLGAMLLLDE--RQDVHLLMTN  110 (618)
T ss_dssp             HHHHHHHHTTTCTTTHHHHHHHHHHH-HHTTCCC--GGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCC--CHHHHHHHHH
T ss_pred             HHHHHHHhhCCCHHHHHHHHHHHHHH-HHcCCCC--cchHHHHHHHHcCCchHHHHHHHHHHHHHhCC--CcHHHHHHHH
Confidence            34445556666666666666555554 3334321  1111 222224467777777776666666552  2333334555


Q ss_pred             HHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHH
Q 006898           90 PLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYT  169 (626)
Q Consensus        90 ~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~  169 (626)
                      .+.+-++|+++.+|-.|+.+++.+..    ..+.+.+.|.+..++.+.++.+|..|+.++..++...++ ..+.+++.+.
T Consensus       111 ~l~kDL~~~n~~vr~lAL~~L~~i~~----~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~-~v~~~~~~l~  185 (618)
T 1w63_A          111 CIKNDLNHSTQFVQGLALCTLGCMGS----SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE-LMEMFLPATK  185 (618)
T ss_dssp             HHHHHHSCSSSHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG-GGGGGGGGTT
T ss_pred             HHHHhcCCCCHhHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH-HHHHHHHHHH
Confidence            66666788999999999999998863    244567788888899999999999999999998876543 3346778888


Q ss_pred             HhcCCCCHHHHHHHHHhHHHHHHhhCc-cchhhhHHHHHHHhhcC---------------CchhHHHHHHHHHHHhhccc
Q 006898          170 QLCQDDMPMVRRSAASNLGKFAATVEP-AHLKTDIMSIFEDLTQD---------------DQDSVRLLAVEGCAALGKLL  233 (626)
Q Consensus       170 ~l~~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~ll~~l~~l~~d---------------~~~~vr~~a~~~l~~l~~~~  233 (626)
                      .++.|+++.|+.+++.++..++...+. ......++|.+.+.+.+               .++..+...++.++.++..-
T Consensus       186 ~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~  265 (618)
T 1w63_A          186 NLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND  265 (618)
T ss_dssp             TSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTC
T ss_pred             HHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCC
Confidence            889999999999999999998754321 01222345555444432               36677777888888877542


Q ss_pred             CchhhhhhhHHHHHHhc------CCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHH
Q 006898          234 EPQDCVAHILPVIVNFS------QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKF  307 (626)
Q Consensus       234 ~~~~~~~~i~~~l~~~~------~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l  307 (626)
                      +.  ..+.+.+.+..++      ++.+..|...+++++..+..   .........+.+..++.+.++++|..|+.++..+
T Consensus       266 ~~--~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~---~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i  340 (618)
T 1w63_A          266 DD--SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS---ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKT  340 (618)
T ss_dssp             HH--HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC---CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHH
T ss_pred             HH--HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence            22  2334455555443      23345677777777765421   1111123567777888888999999999999999


Q ss_pred             HHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHh
Q 006898          308 CRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ  387 (626)
Q Consensus       308 ~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~  387 (626)
                      +..-+  .......+.+...+.|++..+|..+++.+..++..-.    .+.+++.+...+.+.+.++|..++.+++.++.
T Consensus       341 ~~~~p--~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n----v~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~  414 (618)
T 1w63_A          341 VQTDH--NAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN----IRGMMKELLYFLDSCEPEFKADCASGIFLAAE  414 (618)
T ss_dssp             HHHHH--HHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS----THHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred             HhhCH--HHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccccc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            87422  2234456677778899999999999999998876432    23456777777888899999999999999998


Q ss_pred             hhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHH
Q 006898          388 VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD--KVYSIRDAAANNLKRLAE  465 (626)
Q Consensus       388 ~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d--~~~~VR~~a~~~l~~l~~  465 (626)
                      .++++.  ...++.+.+++++....++..++..+..+....+.  .....++.+...+.+  ....+...+++++|.++.
T Consensus       415 k~~~~~--~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~--l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~  490 (618)
T 1w63_A          415 KYAPSK--RWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVE--MHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGD  490 (618)
T ss_dssp             SSCCCH--HHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCS--THHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHH
T ss_pred             HhCccH--HHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChh--HHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHH
Confidence            775443  45677777777665555555556666666554321  123344455555543  234455579999999987


Q ss_pred             HhChH---------HHhhhhHHHHHhhhc--CCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHHHH
Q 006898          466 EFGPE---------WAMQHITPQVLEMIN--NPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNV  534 (626)
Q Consensus       466 ~~~~~---------~~~~~il~~l~~~l~--~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a  534 (626)
                      .+...         .....+++.+..+++  ..+..+|..++.++.++....+.  ..+.+...|..+..|.+++||..|
T Consensus       491 ~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~--~~~~l~~~L~~~~~~~d~evrdRA  568 (618)
T 1w63_A          491 LLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC--TVNRIKKVVSIYGSSIDVELQQRA  568 (618)
T ss_dssp             HHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS--CHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred             HhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc--hHHHHHHHHHHhcCCCCHHHHHHH
Confidence            65320         011234555555554  56889999999999998876543  235556666677889999999999


Q ss_pred             HHHHHHHHh
Q 006898          535 AKVLQSLIP  543 (626)
Q Consensus       535 ~~~l~~i~~  543 (626)
                      ...+.-+..
T Consensus       569 ~~y~~ll~~  577 (618)
T 1w63_A          569 VEYNALFKK  577 (618)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHcC
Confidence            987776643

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.86  E-value=1.6e-19  Score=189.84  Aligned_cols=379  Identities=11%  Similarity=0.050  Sum_probs=292.8

Q ss_pred             HHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc----hhhhhhhHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHhC---C
Q 006898          203 IMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQDKS-WRVRYMVANQLYELCEAVG---P  274 (626)
Q Consensus       203 ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~i~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~---~  274 (626)
                      -+|.+...+.++++.+|..|+..+..+......    ......++|.+..++.+++ +.+|..++.+|+.++....   .
T Consensus        75 ~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~  154 (528)
T 4b8j_A           75 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTK  154 (528)
T ss_dssp             CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence            467777888888999999999999998765441    2244578999999988876 9999999999999985211   0


Q ss_pred             CccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCh---HHHHHhhHHHHHHhc-cCCCHHHHHHHHHHHHhhhhhh
Q 006898          275 EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---ELAIQHILPCVKELS-SDSSQHVRSALASVIMGMAPLL  350 (626)
Q Consensus       275 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~-~d~~~~vr~~~~~~l~~l~~~~  350 (626)
                      .......+|.+..++.++++++|..|+.+|+.++..-..   .......+|.+..++ .+.++.++..++.++..++...
T Consensus       155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~  234 (528)
T 4b8j_A          155 VVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK  234 (528)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS
T ss_pred             HHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC
Confidence            111235899999999999999999999999999863221   122235678888888 6789999999999999998653


Q ss_pred             c--HHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchh---hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 006898          351 G--KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA  425 (626)
Q Consensus       351 ~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~  425 (626)
                      +  ........+|.+..++.+.++.++..++.+|+.++......   .....++|.+.+++.++++.+|..++.+++.++
T Consensus       235 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~  314 (528)
T 4b8j_A          235 PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIV  314 (528)
T ss_dssp             SCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred             CCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHH
Confidence            2  23345678999999999999999999999999987543221   122357899999999999999999999999988


Q ss_pred             HhhCh---hhHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHhChH----HHhhhhHHHHHhhhcCCChHHHHHHHH
Q 006898          426 SQLGV---GFFDDKLGALCMQWLQDK-VYSIRDAAANNLKRLAEEFGPE----WAMQHITPQVLEMINNPHYLYRMTILR  497 (626)
Q Consensus       426 ~~~~~---~~~~~~l~p~l~~~l~d~-~~~VR~~a~~~l~~l~~~~~~~----~~~~~il~~l~~~l~~~~~~vR~~a~~  497 (626)
                      .....   ......++|.+..++.++ +..+|..|+++|+.++.. ..+    .....++|.|.+++.++++.+|..++.
T Consensus       315 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~  393 (528)
T 4b8j_A          315 TGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG-NKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAW  393 (528)
T ss_dssp             TSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence            63221   122245789999999998 999999999999999853 222    123578899999999999999999999


Q ss_pred             HHHHhccccChHH----hhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc---------hh-----hhcccchHH
Q 006898          498 AISLLAPVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---------VS-----TFSVSPFSF  559 (626)
Q Consensus       498 ~l~~i~~~~~~~~----~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~---------~~-----~~~i~~~l~  559 (626)
                      ++++++...+++.    ....+++.|..++.++++.++..++.+|..+....+..         .+     ....++.+.
T Consensus       394 aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~  473 (528)
T 4b8j_A          394 AISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIE  473 (528)
T ss_dssp             HHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHH
Confidence            9999987644432    23568899999999999999999999999998764321         11     123456677


Q ss_pred             hhhccCCCcccccccccCchhHHHHHHHHHHHH
Q 006898          560 MLYLNVNNFNVGFIFAAFPLVLFSCLALNYCHR  592 (626)
Q Consensus       560 ~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~~  592 (626)
                       .+..+++.+++.         .|...++.+..
T Consensus       474 -~L~~~~~~~v~~---------~a~~il~~~~~  496 (528)
T 4b8j_A          474 -NLQSHDNNEIYE---------KAVKILEAYWM  496 (528)
T ss_dssp             -HGGGCSSHHHHH---------HHHHHHHHHCC
T ss_pred             -HHHcCCCHHHHH---------HHHHHHHHHCC
Confidence             788889999999         88888887643

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.86  E-value=2.7e-18  Score=182.34  Aligned_cols=529  Identities=10%  Similarity=0.006  Sum_probs=358.7

Q ss_pred             ccHHHHHHHhcCcc--HHHHHHHHhhHHHHHHhhChHhhhhhhccccccccCCchHHHHHHHHHHhccccccCCcchhhc
Q 006898            9 YPIAVLIDELKNDD--IQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHV   86 (626)
Q Consensus         9 ~~i~~l~~~l~s~d--~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~   86 (626)
                      ..+..++..+++..  .+.|....+.+.++-..+..               .+....+.++.+.+.....  | .+. ..
T Consensus        10 ~~l~~~i~~ir~~~~~~~e~~~i~~e~~~ir~~l~~---------------~~~~~k~~~l~kli~~~~~--G-~d~-~~   70 (618)
T 1w63_A           10 IRLRELIRTIRTARTQAEEREMIQKECAAIRSSFRE---------------EDNTYRCRNVAKLLYMHML--G-YPA-HF   70 (618)
T ss_dssp             CCHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHTT---------------TCTTTHHHHHHHHHHHHHT--T-CCC-GG
T ss_pred             ccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhC---------------CCHHHHHHHHHHHHHHHHc--C-CCC-cc
Confidence            56888888877543  34554444445444332221               1122233344444443332  2 222 22


Q ss_pred             chHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHH
Q 006898           87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRS  166 (626)
Q Consensus        87 l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~  166 (626)
                      ..+-..+++++++...|+..--++..+...-  .+..-.....+.+-++++++.+|..|...++.+.   .++..+.+.+
T Consensus        71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~--~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~---~~~~~~~l~~  145 (618)
T 1w63_A           71 GQLECLKLIASQKFTDKRIGYLGAMLLLDER--QDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG---SSEMCRDLAG  145 (618)
T ss_dssp             GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC---CHHHHHHHHH
T ss_pred             hHHHHHHHHcCCchHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC---CHHHHHHHHH
Confidence            3333345666788888888777766665532  2222345677777788899999999999999987   3567788899


Q ss_pred             HHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc-hhhhhhhHHH
Q 006898          167 IYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QDCVAHILPV  245 (626)
Q Consensus       167 ~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~i~~~  245 (626)
                      .+..++.|+++.||+.|+.++..+....+  .....+++.+..++.|+++.|+..|+.++..+++.-+. ......++|.
T Consensus       146 ~l~~~L~~~~~~VRk~A~~al~~l~~~~p--~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~  223 (618)
T 1w63_A          146 EVEKLLKTSNSYLRKKAALCAVHVIRKVP--ELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQ  223 (618)
T ss_dssp             HHHHHHHSCCHHHHHHHHHHHHHHHHHCG--GGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHCh--HHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence            99999999999999999999999998643  33456788888999999999999999999998865432 1122334444


Q ss_pred             HHHhcC---------------CCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc------CCChHHHHHHHHHhH
Q 006898          246 IVNFSQ---------------DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL------RDNEAEVRIAAAGKV  304 (626)
Q Consensus       246 l~~~~~---------------d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l------~d~~~~vr~~a~~~l  304 (626)
                      +...+.               .+++..+..++++++.++..-  ....+.+.+.+..++      ++.+..|...|++++
T Consensus       224 l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~--~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i  301 (618)
T 1w63_A          224 LVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND--DDSSEAMNDILAQVATNTETSKNVGNAILYETVLTI  301 (618)
T ss_dssp             HHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTC--HHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Confidence            433222               246777777888888776421  111234455555543      234567888888877


Q ss_pred             HHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHH
Q 006898          305 TKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ  384 (626)
Q Consensus       305 ~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~  384 (626)
                      ..+..   .........+.+..++.++++.+|..++.+++.++...+.  ......+.++.++.|++..||..++..+..
T Consensus       302 ~~l~~---~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~--~~~~~~~~i~~~l~d~d~~Ir~~alelL~~  376 (618)
T 1w63_A          302 MDIKS---ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN--AVQRHRSTIVDCLKDLDVSIKRRAMELSFA  376 (618)
T ss_dssp             HHSCC---CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH--HHGGGHHHHHHGGGSSCHHHHHHHHHHHHH
T ss_pred             HhcCC---CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH--HHHHHHHHHHHHccCCChhHHHHHHHHHHH
Confidence            66422   1222234567777788888999999999999999865322  233455678899999999999999999998


Q ss_pred             HHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Q 006898          385 VNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLA  464 (626)
Q Consensus       385 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~  464 (626)
                      ++..-..    +.+++.+.+.+.+.+..+|..++.+++.++..+.+.  ....++.++.++.+....++..+...+..+.
T Consensus       377 l~~~~nv----~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~--~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii  450 (618)
T 1w63_A          377 LVNGNNI----RGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPS--KRWHIDTIMRVLTTAGSYVRDDAVPNLIQLI  450 (618)
T ss_dssp             HCCSSST----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCC--HHHHHHHHHHHHHHTGGGSCSSHHHHHHHHH
T ss_pred             HcccccH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCcc--HHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence            8764322    456778888888889999999999999999876543  2456778888888877778888888888888


Q ss_pred             HHhChHHHhhhhHHHHHhhhcC--CChHHHHHHHHHHHHhccccChH---------HhhhcHHHHHhhhCC--CCCchHH
Q 006898          465 EEFGPEWAMQHITPQVLEMINN--PHYLYRMTILRAISLLAPVMGSE---------ITCSRLLPVVINASK--DRVPNIK  531 (626)
Q Consensus       465 ~~~~~~~~~~~il~~l~~~l~~--~~~~vR~~a~~~l~~i~~~~~~~---------~~~~~~l~~l~~~l~--d~~~~vR  531 (626)
                      .....  ....+++.+.+.+.+  ........+++++|..+..+...         .....+.+.+..+++  ..++.||
T Consensus       451 ~~~p~--l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr  528 (618)
T 1w63_A          451 TNSVE--MHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTR  528 (618)
T ss_dssp             HHSCS--THHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHH
T ss_pred             hcChh--HHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHH
Confidence            76442  345566777776653  23445557899999987643210         011234444444443  5688999


Q ss_pred             HHHHHHHHHHHhhhccchhhhcccchHHhhhccCCCcccccccccCchhHHHHHHHHHH
Q 006898          532 FNVAKVLQSLIPIVDQSVSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYC  590 (626)
Q Consensus       532 ~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~  590 (626)
                      ..++.++.++....+.  ..+.+...|. ....|.|.+||.         .|...+.-+
T Consensus       529 ~~~lta~~Kl~~~~~~--~~~~l~~~L~-~~~~~~d~evrd---------RA~~y~~ll  575 (618)
T 1w63_A          529 GYALTAIMKLSTRFTC--TVNRIKKVVS-IYGSSIDVELQQ---------RAVEYNALF  575 (618)
T ss_dssp             HHHHHHHHHHHTTCSS--CHHHHHHHHH-HHTTCSCHHHHH---------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcc--hHHHHHHHHH-HhcCCCCHHHHH---------HHHHHHHHH
Confidence            9999999999887643  3456777777 888899999999         777766554

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.80  E-value=1.3e-16  Score=168.58  Aligned_cols=508  Identities=11%  Similarity=0.056  Sum_probs=324.9

Q ss_pred             HHHHHHHhcC---ccHHHHHHHHhhHHHHHHhhChHhhhhhhcccc-ccccCCchHHHHHHHHHHhccccccCCcchhhc
Q 006898           11 IAVLIDELKN---DDIQLRLNSIRRLSTIARALGEERTRKELIPFL-SENNDDDDEVLLAMAEELGVFIPYVGGVEHAHV   86 (626)
Q Consensus        11 i~~l~~~l~s---~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l-~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~   86 (626)
                      ++.+-+.|++   .|...|..+++.+-.+ ..+|.+.  ..+.+.+ ..+.+++.+.|+.+--.+..+++  +.++....
T Consensus        37 ~~~ir~~~~~~~~~~~~~k~~~l~Kli~l-~~~G~d~--s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~--~~~e~~~L  111 (621)
T 2vgl_A           37 LANIRSKFKGDKALDGYSKKKYVCKLLFI-FLLGHDI--DFGHMEAVNLLSSNRYTEKQIGYLFISVLVN--SNSELIRL  111 (621)
T ss_dssp             HHHHHHHHHSSSCCCHHHHHHHHHHHHHH-HHHSCCC--CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCC--CCHHHHHH
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHH-HHcCCCC--chhHHHHHHHhcCCCHHHHHHHHHHHHHHcc--CCcHHHHH
Confidence            3344444543   2455555555555544 3334321  1222222 22457788888888888887766  23444444


Q ss_pred             chHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHh--cCCccchhHHHhhHhHHhcCCCChHHH-HH
Q 006898           87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLA--AGEWFTARVSACGLFHIAYPSAPDILK-TE  163 (626)
Q Consensus        87 l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~--~~~~~~~r~~a~~~l~~~~~~~~~~~~-~~  163 (626)
                      +++.+.+=++|+++.+|-.|+.+++.+..    ..+.+.+.|.+.+++  .|.++.+|..|+.++..++...++... +.
T Consensus       112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~~----~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~  187 (621)
T 2vgl_A          112 INNAIKNDLASRNPTFMGLALHCIANVGS----REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGD  187 (621)
T ss_dssp             HHHHHHHHHHSCCHHHHHHHHHHHHHHCC----HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCS
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHhhccCC----HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchh
Confidence            55666666778999999999999998843    235567888888888  888999999999999888875543222 26


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCcc--chhhhHHHHHHHhhcCC-------------chhHHHHHHHHHHH
Q 006898          164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDD-------------QDSVRLLAVEGCAA  228 (626)
Q Consensus       164 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~l~~d~-------------~~~vr~~a~~~l~~  228 (626)
                      +.+.+..+++|+++.|+.+++.++..++..-+..  ...+.++..+.+++.+.             ++-.+...++.+..
T Consensus       188 ~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~  267 (621)
T 2vgl_A          188 WTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQC  267 (621)
T ss_dssp             CHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGG
T ss_pred             HHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHH
Confidence            7888888999999999999999999988754321  12334445555554322             45566666666665


Q ss_pred             hhcccCchhhhhhhHHHHHHhc---CC-C----------CHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChH
Q 006898          229 LGKLLEPQDCVAHILPVIVNFS---QD-K----------SWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEA  294 (626)
Q Consensus       229 l~~~~~~~~~~~~i~~~l~~~~---~d-~----------~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~  294 (626)
                      ++..-.+ .....+.+.+...+   .+ +          ...|...++.++..+.   +...........+..++.+.++
T Consensus       268 ~~~~~d~-~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~---~~~~~~~~~~~~L~~~L~~~~~  343 (621)
T 2vgl_A          268 YPPPEDP-AVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD---SEPNLLVRACNQLGQFLQHRET  343 (621)
T ss_dssp             SSSCSSH-HHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHSSCSCH
T ss_pred             hCCCCCH-HHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhcCCCc
Confidence            5432111 22233333333322   11 1          1144444555544432   2122234567777888888899


Q ss_pred             HHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhcc-CCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHH
Q 006898          295 EVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS-DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPD  373 (626)
Q Consensus       295 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~  373 (626)
                      ++|..++.++..++...+.........+.+...+. |++..+|..+++.+..++..    ...+.++..+...+.+.+.+
T Consensus       344 niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~----~Nv~~Iv~eL~~yl~~~d~~  419 (621)
T 2vgl_A          344 NLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR----SNAQQIVAEMLSYLETADYS  419 (621)
T ss_dssp             HHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHHCCHH
T ss_pred             chHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh----hhHHHHHHHHHHHHHhcCHH
Confidence            99999999999998755422233555666666666 99999999999998888643    34567778888888888999


Q ss_pred             HHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCc--hH
Q 006898          374 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKV--YS  451 (626)
Q Consensus       374 vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~--~~  451 (626)
                      .|..++.+++.++..+.++.  +..+..+.+++.+....+...++..+..+.....  ......+..+...+.|+.  ..
T Consensus       420 ~~~~~v~~I~~la~k~~~~~--~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~--~~~~~~~~~l~~~l~~~~~~~~  495 (621)
T 2vgl_A          420 IREEIVLKVAILAEKYAVDY--TWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRD--DVQGYAAKTVFEALQAPACHEN  495 (621)
T ss_dssp             HHHHHHHHHHHHHHHHCSST--HHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGC--SCHHHHHHHHHHHHTSSSCCHH
T ss_pred             HHHHHHHHHHHHHHhcCCcH--HHHHHHHHHHHHhhcccchHHHHHHHHHHHhCCh--hHHHHHHHHHHHHHcCccchHH
Confidence            99999999999988775443  3456666666554333344444445554443332  122334555666777664  34


Q ss_pred             HHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCC--CCC
Q 006898          452 IRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASK--DRV  527 (626)
Q Consensus       452 VR~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~--d~~  527 (626)
                      +-..+++.+|..+.......  ....++..+.+.+.+.+..+|..++.++.++....+.  ..+.+...|.....  |.+
T Consensus       496 li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~--~~~~i~~~l~~~~~~~~~d  573 (621)
T 2vgl_A          496 LVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE--VKATIQDVLRSDSQLKNAD  573 (621)
T ss_dssp             HHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHSSHHHHSCSS
T ss_pred             HHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH--HHHHHHHHHHHHhcCCCCC
Confidence            55677799999876543210  0124455666677788999999999999998765432  23445555555555  999


Q ss_pred             chHHHHHHHHHHHH
Q 006898          528 PNIKFNVAKVLQSL  541 (626)
Q Consensus       528 ~~vR~~a~~~l~~i  541 (626)
                      ++||..|..-+.-+
T Consensus       574 ~evrdRA~~y~~Ll  587 (621)
T 2vgl_A          574 VELQQRAVEYLRLS  587 (621)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998776655

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.78  E-value=3.6e-16  Score=165.23  Aligned_cols=539  Identities=11%  Similarity=0.033  Sum_probs=349.2

Q ss_pred             CCCcccHHHHHHHhcCcc--HHHHHHHHhhHHHHHHhhChHhhhhhhccccccccCCchH-HHHHHHHHHhccccccCCc
Q 006898            5 DEPLYPIAVLIDELKNDD--IQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDE-VLLAMAEELGVFIPYVGGV   81 (626)
Q Consensus         5 ~~~~~~i~~l~~~l~s~d--~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~~-vr~~~~~~l~~~~~~~~~~   81 (626)
                      .+++..+..++..+++..  .++|...-+.+.++-..+             ..-...++. .+.++.+.+.-...  | .
T Consensus         7 ~~~~~~l~~~I~~ir~~~~~~~e~~~i~~E~~~ir~~~-------------~~~~~~~~~~k~~~l~Kli~l~~~--G-~   70 (621)
T 2vgl_A            7 GEGMRGLAVFISDIRNCKSKEAEIKRINKELANIRSKF-------------KGDKALDGYSKKKYVCKLLFIFLL--G-H   70 (621)
T ss_dssp             --CCHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHH-------------HSSSCCCHHHHHHHHHHHHHHHHH--S-C
T ss_pred             CCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-------------hcCCCCCHHHHHHHHHHHHHHHHc--C-C
Confidence            456677778887776443  234444444444442222             110112333 34444555444332  3 2


Q ss_pred             chhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHH
Q 006898           82 EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILK  161 (626)
Q Consensus        82 ~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~  161 (626)
                      +.. ...+-..+++++++...|+.+--++..+.+.-+  +..-.+...+.+-++++++.+|..|...++.+..   ++..
T Consensus        71 d~s-~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~--e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~---~e~~  144 (621)
T 2vgl_A           71 DID-FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNS--ELIRLINNAIKNDLASRNPTFMGLALHCIANVGS---REMA  144 (621)
T ss_dssp             CCC-SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCH--HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC---HHHH
T ss_pred             CCc-hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCc--HHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC---HHHH
Confidence            222 333334457778889999988877777665422  2223356677777788899999999999998853   6778


Q ss_pred             HHHHHHHHHhc--CCCCHHHHHHHHHhHHHHHHhhCccchh-hhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCch--
Q 006898          162 TELRSIYTQLC--QDDMPMVRRSAASNLGKFAATVEPAHLK-TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ--  236 (626)
Q Consensus       162 ~~l~~~l~~l~--~d~~~~vR~~a~~~l~~l~~~~~~~~~~-~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--  236 (626)
                      +.+.+.+.+++  .|.++.||+.|+.++..+....+. ... +.+.+.+.+++.|+++.|+.+|+.++..++..-+..  
T Consensus       145 ~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~-~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~  223 (621)
T 2vgl_A          145 EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD-LVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFK  223 (621)
T ss_dssp             HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG-GCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHT
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh-hcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHH
Confidence            88999999999  999999999999999999985432 221 268889999999999999999999999887654331  


Q ss_pred             hhhhhhHHHHHHhcCCC-------------CHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc---CC-C-------
Q 006898          237 DCVAHILPVIVNFSQDK-------------SWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL---RD-N-------  292 (626)
Q Consensus       237 ~~~~~i~~~l~~~~~d~-------------~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l---~d-~-------  292 (626)
                      ...+.++..+.+++.+.             ++..+....+.++.++.. +.....+.+.+.+..++   .+ +       
T Consensus       224 ~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~-~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~  302 (621)
T 2vgl_A          224 TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPP-EDPAVRGRLTECLETILNKAQEPPKSKKVQH  302 (621)
T ss_dssp             THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSC-SSHHHHHHHHHHHHHHHHHHHSCCSCSSHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHhhccCcccccccc
Confidence            23344445555543221             455666666665544311 00011112223222222   11 1       


Q ss_pred             -h--HHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhc-
Q 006898          293 -E--AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-  368 (626)
Q Consensus       293 -~--~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-  368 (626)
                       +  ..|..+|++++-.+.   +...+.......+..++.++++.+|..++..+..+....+.........+.++.+++ 
T Consensus       303 ~n~~~aVl~ea~~~i~~l~---~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~  379 (621)
T 2vgl_A          303 SNAKNAVLFEAISLIIHHD---SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKT  379 (621)
T ss_dssp             HHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTT
T ss_pred             cchHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhcc
Confidence             2  255556666555442   233444666778888888899999999999999998765422334455677888888 


Q ss_pred             CCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCC
Q 006898          369 DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDK  448 (626)
Q Consensus       369 d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~  448 (626)
                      |++..||..++..+..++..-.    .+.++..+.+.+.+.+...|..++..++.++..+.+..  +..+..+..++.+.
T Consensus       380 d~d~~Ir~~aL~lL~~l~~~~N----v~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~--~~~v~~Ll~ll~~~  453 (621)
T 2vgl_A          380 ERDVSVRQRAVDLLYAMCDRSN----AQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDY--TWYVDTILNLIRIA  453 (621)
T ss_dssp             CCCHHHHHHHHHHHHHHCCHHH----HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSST--HHHHHHHHHHHHHH
T ss_pred             CCCHhHHHHHHHHHHHHcChhh----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH--HHHHHHHHHHHHhh
Confidence            9999999999999888764321    25678888888888889999999999999987765432  34566777777665


Q ss_pred             chHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCCh--HHHHHHHHHHHHhccccChHH-h-hhcHHHHHhhhCC
Q 006898          449 VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHY--LYRMTILRAISLLAPVMGSEI-T-CSRLLPVVINASK  524 (626)
Q Consensus       449 ~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~--~vR~~a~~~l~~i~~~~~~~~-~-~~~~l~~l~~~l~  524 (626)
                      ...+...+...+..++.....  .....+..+.+.+.++..  .+-..+++.+|..+....... . ...++..+.....
T Consensus       454 ~~~v~~ev~~~l~~ii~~~~~--~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~  531 (621)
T 2vgl_A          454 GDYVSEEVWYRVIQIVINRDD--VQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFH  531 (621)
T ss_dssp             GGGSCSHHHHHHHHHHGGGCS--CHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHT
T ss_pred             cccchHHHHHHHHHHHhCChh--HHHHHHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhc
Confidence            555666666666666654322  344566677777777653  344567799998876443211 0 1234556666667


Q ss_pred             CCCchHHHHHHHHHHHHHhhhccchhhhcccchHHhhhcc--CCCcccccccccCchhHHHHHHHHHH
Q 006898          525 DRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSFMLYLN--VNNFNVGFIFAAFPLVLFSCLALNYC  590 (626)
Q Consensus       525 d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~l~~--d~d~~vr~~~~~~~~~~~a~~al~~~  590 (626)
                      +.++.||..++.++.++....+.  ..+.+...|. ....  |.|.+||.         .|..-+.-+
T Consensus       532 ~~~~~v~~~~Lta~~Kl~~~~p~--~~~~i~~~l~-~~~~~~~~d~evrd---------RA~~y~~Ll  587 (621)
T 2vgl_A          532 LCSVPTRALLLSTYIKFVNLFPE--VKATIQDVLR-SDSQLKNADVELQQ---------RAVEYLRLS  587 (621)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHS-SHHHHSCSSHHHHH---------HHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHChH--HHHHHHHHHH-HHhcCCCCCHHHHH---------HHHHHHHHH
Confidence            88899999999999999776532  3345555555 6666  99999999         777765544

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.78  E-value=9.5e-17  Score=166.91  Aligned_cols=377  Identities=11%  Similarity=0.077  Sum_probs=257.0

Q ss_pred             HHHHHHhhcCCchhHHHHHHHHHHHhhcccCc----hhhhhhhHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCC---C
Q 006898          204 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP---E  275 (626)
Q Consensus       204 l~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~i~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~---~  275 (626)
                      ++-+.+.+++++.+.+..|...+..+...-..    ..+...++|.+.+++. +.++.++..++.+|+.++.....   .
T Consensus        59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~  138 (510)
T 3ul1_B           59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA  138 (510)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            34445555666666666666666655432211    2233446666666664 34566777777777776532100   0


Q ss_pred             ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC---hHHHHHhhHHHHHHhccCCC-----HHHHHHHHHHHHhhh
Q 006898          276 PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN---PELAIQHILPCVKELSSDSS-----QHVRSALASVIMGMA  347 (626)
Q Consensus       276 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~l~~d~~-----~~vr~~~~~~l~~l~  347 (626)
                      ......+|.+..+++++++++|..|+.+|+.++..-.   ........++.+..++.+++     ..+.+.+..++..++
T Consensus       139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~  218 (510)
T 3ul1_B          139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC  218 (510)
T ss_dssp             HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence            1123467888888888888888888888888865321   11223455677777766543     345566666777666


Q ss_pred             hhhc---HHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchh---hHHhhHHHHHHHHhcCCChHHHHHHHHHH
Q 006898          348 PLLG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYI  421 (626)
Q Consensus       348 ~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~r~~~~~~l  421 (626)
                      ..-.   .-.....++|.+..++.+.++.++..++.+|..+...-...   .....++|.+.+++.+++..++..++.++
T Consensus       219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL  298 (510)
T 3ul1_B          219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI  298 (510)
T ss_dssp             CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred             hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHH
Confidence            4321   12234568899999999999999999999999887542211   11245788999999999999999999999


Q ss_pred             HHHHHhhCh---hhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh---HHHhhhhHHHHHhhhcCCChHHHHHH
Q 006898          422 PLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTI  495 (626)
Q Consensus       422 ~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~l~~~~~~vR~~a  495 (626)
                      ..++.....   .......+|.+..++.+++..+|..|+++|+.++.....   ......++|.+..++.++++.+|..+
T Consensus       299 ~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A  378 (510)
T 3ul1_B          299 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEA  378 (510)
T ss_dssp             HHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred             HHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHH
Confidence            988643211   112234567788889999999999999999999753211   12335689999999999999999999


Q ss_pred             HHHHHHhccccChHH----hhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhcc---c-hh-----hhcccchHHhhh
Q 006898          496 LRAISLLAPVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---S-VS-----TFSVSPFSFMLY  562 (626)
Q Consensus       496 ~~~l~~i~~~~~~~~----~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~---~-~~-----~~~i~~~l~~~l  562 (626)
                      +.++.+++.....+.    ....+++.|..+++++++.++..++++|.++......   . .+     ....+..+. .+
T Consensus       379 a~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie-~L  457 (510)
T 3ul1_B          379 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIE-AL  457 (510)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHH-HG
T ss_pred             HHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHH-HH
Confidence            999999987655442    2456889999999999999999999999998865432   1 11     123456677 78


Q ss_pred             ccCCCcccccccccCchhHHHHHHHHHH
Q 006898          563 LNVNNFNVGFIFAAFPLVLFSCLALNYC  590 (626)
Q Consensus       563 ~~d~d~~vr~~~~~~~~~~~a~~al~~~  590 (626)
                      ..+++.+|+.         .|...++++
T Consensus       458 q~~~n~~i~~---------~A~~iie~y  476 (510)
T 3ul1_B          458 QRHENESVYK---------ASLNLIEKY  476 (510)
T ss_dssp             GGCSSHHHHH---------HHHHHHHHH
T ss_pred             HcCCCHHHHH---------HHHHHHHHH
Confidence            8889999988         777777766

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.77  E-value=2.3e-16  Score=163.96  Aligned_cols=378  Identities=10%  Similarity=0.073  Sum_probs=279.8

Q ss_pred             HHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccc----hhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhhcccCc---hh
Q 006898          166 SIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH----LKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEP---QD  237 (626)
Q Consensus       166 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~ll~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~---~~  237 (626)
                      +.+.+.+.+.+..++..|+..+.++...-..+.    +...++|.|.+++++. ++.++..|+.+|.+++....+   ..
T Consensus        60 ~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~v  139 (510)
T 3ul1_B           60 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV  139 (510)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            344566788889999999999988775443322    2345789999998754 578999999999999865443   12


Q ss_pred             hhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCCCh-----HHHHHHHHHhHHHHHH
Q 006898          238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNE-----AEVRIAAAGKVTKFCR  309 (626)
Q Consensus       238 ~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~-----~~vr~~a~~~l~~l~~  309 (626)
                      .....+|.+..++.+++..+|..++.+|+.++....   ........++.+..++.+.+     ..+...+..++..++.
T Consensus       140 v~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~  219 (510)
T 3ul1_B          140 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR  219 (510)
T ss_dssp             HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred             HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhh
Confidence            344578999999999999999999999999974211   11122356788888887544     3456677778877776


Q ss_pred             hhCh---HHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHH---HHHHhHHHHHHHhhcCCCHHHHHHHHHhhH
Q 006898          310 ILNP---ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLD  383 (626)
Q Consensus       310 ~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~  383 (626)
                      .-..   ......++|.+.+++.+.++.++..++.++..++..-...   .....++|.+..++.+.+..++..++.+++
T Consensus       220 ~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~  299 (510)
T 3ul1_B          220 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIG  299 (510)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHH
Confidence            3321   1234678899999999999999999999999987543211   112346889999999999999999999999


Q ss_pred             HHHhhhchh---hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC---hhhHHHHHHHHHHHHhcCCchHHHHHHH
Q 006898          384 QVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAA  457 (626)
Q Consensus       384 ~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~---~~~~~~~l~p~l~~~l~d~~~~VR~~a~  457 (626)
                      .+...-...   ......++.+..++.+++..+|..++.++..++....   .......++|.+..++.+.+..+|..|+
T Consensus       300 nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa  379 (510)
T 3ul1_B          300 NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA  379 (510)
T ss_dssp             HHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHH
T ss_pred             HhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHH
Confidence            986432211   1223456777888899999999999999999875322   1123345889999999999999999999


Q ss_pred             HHHHHHHHHhChHH----HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccc---cCh-HHh-----hhcHHHHHhhhCC
Q 006898          458 NNLKRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPV---MGS-EIT-----CSRLLPVVINASK  524 (626)
Q Consensus       458 ~~l~~l~~~~~~~~----~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~---~~~-~~~-----~~~~l~~l~~~l~  524 (626)
                      ++|+.++.....+.    .....++.|.+++..++..++..++.++.++.+.   .+. +.+     ....+..+..+..
T Consensus       380 ~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~  459 (510)
T 3ul1_B          380 WAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR  459 (510)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGG
T ss_pred             HHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHc
Confidence            99999987644432    2366899999999999999999999999998753   222 111     2245667778888


Q ss_pred             CCCchHHHHHHHHHHHHHh
Q 006898          525 DRVPNIKFNVAKVLQSLIP  543 (626)
Q Consensus       525 d~~~~vR~~a~~~l~~i~~  543 (626)
                      +++.+|+..|.+.|.+.+.
T Consensus       460 ~~n~~i~~~A~~iie~yf~  478 (510)
T 3ul1_B          460 HENESVYKASLNLIEKYFS  478 (510)
T ss_dssp             CSSHHHHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHHHHHHHHCC
Confidence            9999999999999888664

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.77  E-value=2.2e-16  Score=165.27  Aligned_cols=377  Identities=11%  Similarity=0.081  Sum_probs=254.6

Q ss_pred             HHHHHHhhcCCchhHHHHHHHHHHHhhcccCc----hhhhhhhHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCC---C
Q 006898          204 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP---E  275 (626)
Q Consensus       204 l~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~i~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~---~  275 (626)
                      ++.+.+.+.+++++.+..|+..+..+...-..    ..+...++|.+..++. +.++.++..++.+|+.++.....   .
T Consensus        78 l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~  157 (529)
T 3tpo_A           78 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA  157 (529)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            34444445555555555555555544322111    1223445666655553 34466666666666666532110   0


Q ss_pred             ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC---hHHHHHhhHHHHHHhccCCC-----HHHHHHHHHHHHhhh
Q 006898          276 PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN---PELAIQHILPCVKELSSDSS-----QHVRSALASVIMGMA  347 (626)
Q Consensus       276 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~l~~d~~-----~~vr~~~~~~l~~l~  347 (626)
                      ......+|.+..++.++++++|..|+.+|+.++..-.   ........++.+..++.+++     ..+...++.++..++
T Consensus       158 vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~  237 (529)
T 3tpo_A          158 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC  237 (529)
T ss_dssp             HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHH
Confidence            1123467888888888888888888888888764211   11223445677777776543     345566666777665


Q ss_pred             hhhc---HHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchh---hHHhhHHHHHHHHhcCCChHHHHHHHHHH
Q 006898          348 PLLG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYI  421 (626)
Q Consensus       348 ~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~r~~~~~~l  421 (626)
                      ..-.   .......++|.+..++.+.++.++..++.+|..+.......   .....++|.+.+++.++++.++..++.++
T Consensus       238 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL  317 (529)
T 3tpo_A          238 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI  317 (529)
T ss_dssp             CCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred             hcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHH
Confidence            4321   12234568899999999999999999999999887542211   12245788999999999999999999999


Q ss_pred             HHHHHhhCh---hhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh---HHHhhhhHHHHHhhhcCCChHHHHHH
Q 006898          422 PLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTI  495 (626)
Q Consensus       422 ~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~l~~~~~~vR~~a  495 (626)
                      ..++.....   .......+|.+..++.+++..+|..|+++|+.++.....   ......++|.+..++.+++..+|..|
T Consensus       318 ~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A  397 (529)
T 3tpo_A          318 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAA  397 (529)
T ss_dssp             HHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred             HHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHH
Confidence            988743211   122344678889999999999999999999999753211   12345689999999999999999999


Q ss_pred             HHHHHHhccccChHH----hhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhcc---c-hh-----hhcccchHHhhh
Q 006898          496 LRAISLLAPVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---S-VS-----TFSVSPFSFMLY  562 (626)
Q Consensus       496 ~~~l~~i~~~~~~~~----~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~---~-~~-----~~~i~~~l~~~l  562 (626)
                      +.++++++.....+.    ....+++.|..++..+++.++..++++|..+......   . .+     ....+..+. .+
T Consensus       398 ~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie-~L  476 (529)
T 3tpo_A          398 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIE-AL  476 (529)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHT-GG
T ss_pred             HHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHH-HH
Confidence            999999987655442    2456889999999999999999999999998765322   1 11     123456666 78


Q ss_pred             ccCCCcccccccccCchhHHHHHHHHHH
Q 006898          563 LNVNNFNVGFIFAAFPLVLFSCLALNYC  590 (626)
Q Consensus       563 ~~d~d~~vr~~~~~~~~~~~a~~al~~~  590 (626)
                      ..+++.+|+.         .|...++++
T Consensus       477 q~~~n~~i~~---------~A~~iie~y  495 (529)
T 3tpo_A          477 QRHENESVYK---------ASLNLIEKY  495 (529)
T ss_dssp             GGCSSHHHHH---------HHHHHHHHH
T ss_pred             HcCCCHHHHH---------HHHHHHHHH
Confidence            8888999999         887777776

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.77  E-value=4e-16  Score=163.22  Aligned_cols=378  Identities=11%  Similarity=0.078  Sum_probs=274.0

Q ss_pred             HHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccc----hhhhHHHHHHHhhcC-CchhHHHHHHHHHHHhhcccCc---hh
Q 006898          166 SIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH----LKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEP---QD  237 (626)
Q Consensus       166 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~ll~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~---~~  237 (626)
                      +.+.+.+.++++..+..++..+..+...-..+.    ....++|.|.+++.. +++.++..|+.+|..++.....   ..
T Consensus        79 ~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~v  158 (529)
T 3tpo_A           79 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV  158 (529)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            344556677778888888888877654333221    234578888888854 4578888899999988865443   22


Q ss_pred             hhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh---CCCccccchHHHHHHhcCCCh-----HHHHHHHHHhHHHHHH
Q 006898          238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV---GPEPTRMDLVPAYVRLLRDNE-----AEVRIAAAGKVTKFCR  309 (626)
Q Consensus       238 ~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~-----~~vr~~a~~~l~~l~~  309 (626)
                      .....+|.+..++.+++..+|..++.+|+.++...   .........++.++.++.+.+     ..+...+..++..++.
T Consensus       159 v~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~  238 (529)
T 3tpo_A          159 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR  238 (529)
T ss_dssp             HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred             HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHh
Confidence            34567888889999999999999999999887421   011122346788888887543     3456677777777765


Q ss_pred             hhCh---HHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHH---HHHHhHHHHHHHhhcCCCHHHHHHHHHhhH
Q 006898          310 ILNP---ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLD  383 (626)
Q Consensus       310 ~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~  383 (626)
                      .-.+   ......++|.+.+++.+.+..++..++.++..++......   .....++|.+..++.+++..++..++.+++
T Consensus       239 ~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~  318 (529)
T 3tpo_A          239 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIG  318 (529)
T ss_dssp             CCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred             cccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHH
Confidence            3321   1334678899999999999999999999998887543211   112347888999999999999999999999


Q ss_pred             HHHhhhch---hhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh---hhHHHHHHHHHHHHhcCCchHHHHHHH
Q 006898          384 QVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAA  457 (626)
Q Consensus       384 ~~~~~~~~---~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~VR~~a~  457 (626)
                      .+...-..   .......++.+..++.+++..+|..++.++..++.....   ......++|.+..++.+.+..+|..|+
T Consensus       319 nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~  398 (529)
T 3tpo_A          319 NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAA  398 (529)
T ss_dssp             HHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHH
T ss_pred             HHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHH
Confidence            98643211   112345678888999999999999999999998753221   123345889999999999999999999


Q ss_pred             HHHHHHHHHhChHH----HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccc---cCh-HHh-----hhcHHHHHhhhCC
Q 006898          458 NNLKRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPV---MGS-EIT-----CSRLLPVVINASK  524 (626)
Q Consensus       458 ~~l~~l~~~~~~~~----~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~---~~~-~~~-----~~~~l~~l~~~l~  524 (626)
                      ++|+.++.....+.    ....+++.|.+++..++..++..++.++.++.+.   .+. +.+     ....+..+..+..
T Consensus       399 ~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~  478 (529)
T 3tpo_A          399 WAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR  478 (529)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGG
T ss_pred             HHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHc
Confidence            99999987654432    2356899999999999999999999999998753   221 111     1234667778888


Q ss_pred             CCCchHHHHHHHHHHHHHh
Q 006898          525 DRVPNIKFNVAKVLQSLIP  543 (626)
Q Consensus       525 d~~~~vR~~a~~~l~~i~~  543 (626)
                      +++.+|+..|.+.|.+.+.
T Consensus       479 ~~n~~i~~~A~~iie~yf~  497 (529)
T 3tpo_A          479 HENESVYKASLNLIEKYFS  497 (529)
T ss_dssp             CSSHHHHHHHHHHHHHHC-
T ss_pred             CCCHHHHHHHHHHHHHHCC
Confidence            9999999999999888654

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.74  E-value=1.5e-16  Score=152.29  Aligned_cols=255  Identities=15%  Similarity=0.065  Sum_probs=189.9

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhh
Q 006898          241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI  320 (626)
Q Consensus       241 ~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l  320 (626)
                      ..++.+...+.|+++.+|..++.+|+.+.        ....++.+..+++|+++.+|..|+.+|+.+...   ......+
T Consensus        23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~--------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~---~~~~~~l   91 (280)
T 1oyz_A           23 LNDDELFRLLDDHNSLKRISSARVLQLRG--------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC---KKCEDNV   91 (280)
T ss_dssp             SCHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC---TTTHHHH
T ss_pred             hhHHHHHHHHHcCCHHHHHHHHHHHHccC--------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccc---cccchHH
Confidence            35667777888889999999888888765        245778888888998899999999888776531   1112345


Q ss_pred             HHHHH-HhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHH
Q 006898          321 LPCVK-ELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL  399 (626)
Q Consensus       321 ~~~l~-~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~  399 (626)
                      ++.+. .+.+|+++.||..++.+++.++...+  ...+.+++.+...++|+++.||..++.+|+.+..        ...+
T Consensus        92 ~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~--~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~  161 (280)
T 1oyz_A           92 FNILNNMALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATI  161 (280)
T ss_dssp             HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHH
Confidence            56665 35678899999999999888864321  1234567888888999999999999999987643        2467


Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHH
Q 006898          400 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ  479 (626)
Q Consensus       400 ~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~  479 (626)
                      |.+.+.++|+++.+|..++.+++.+...      .+..+|.+...+.|+++.||..|+.+|+.+.        ....+|.
T Consensus       162 ~~L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~--------~~~~~~~  227 (280)
T 1oyz_A          162 PLLINLLKDPNGDVRNWAAFAININKYD------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK--------DKRVLSV  227 (280)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHTCC------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT--------CGGGHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhhccC------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC--------CHhhHHH
Confidence            8888888999999999999988776311      1346778888889999999999999988774        2346788


Q ss_pred             HHhhhcCCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCC-CCchHHHHHHHHHHH
Q 006898          480 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKD-RVPNIKFNVAKVLQS  540 (626)
Q Consensus       480 l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d-~~~~vR~~a~~~l~~  540 (626)
                      +.+.+.|++  +|..++.+++.+..        +..+|.|..++++ ++++++..+.+.+.+
T Consensus       228 L~~~l~d~~--vr~~a~~aL~~i~~--------~~~~~~L~~~l~~~~~~~~~~~~~~~l~~  279 (280)
T 1oyz_A          228 LCDELKKNT--VYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLKR  279 (280)
T ss_dssp             HHHHHTSSS--CCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred             HHHHhcCcc--HHHHHHHHHHhcCc--------hhhhHHHHHHHhcCCCcHHHHHHHHHhhc
Confidence            888887765  88899999998764        3567778877754 567788777777653

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.74  E-value=1.2e-16  Score=152.92  Aligned_cols=247  Identities=19%  Similarity=0.112  Sum_probs=193.4

Q ss_pred             chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhH
Q 006898          280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQL  359 (626)
Q Consensus       280 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l  359 (626)
                      ..++.+...++|+++.+|..|+.+|+.+..        +..++.+.++++|+++.+|..++.+++.+....   .....+
T Consensus        23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~---~~~~~l   91 (280)
T 1oyz_A           23 LNDDELFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK---KCEDNV   91 (280)
T ss_dssp             SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT---TTHHHH
T ss_pred             hhHHHHHHHHHcCCHHHHHHHHHHHHccCC--------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc---ccchHH
Confidence            457888899999999999999999998763        445788888889999999999999998886321   123346


Q ss_pred             HHHHH-HhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHH
Q 006898          360 LPIFL-SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG  438 (626)
Q Consensus       360 ~~~l~-~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~  438 (626)
                      ++.+. .+++|+++.||..++.+|+.+....+.  ....+++.+.+.++|+++.+|..++.+++.+..        +..+
T Consensus        92 ~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~--~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~  161 (280)
T 1oyz_A           92 FNILNNMALNDKSACVRATAIESTAQRCKKNPI--YSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATI  161 (280)
T ss_dssp             HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc--ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHH
Confidence            66666 357899999999999999998743221  124678899999999999999999999987643        2367


Q ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhhcHHHH
Q 006898          439 ALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPV  518 (626)
Q Consensus       439 p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~  518 (626)
                      |.+...+.|+++.||..|+.+|+.+..      .....+|.+.++++|+++.+|..++.+++.+..        +..+|.
T Consensus       162 ~~L~~~l~d~~~~vr~~a~~aL~~~~~------~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~--------~~~~~~  227 (280)
T 1oyz_A          162 PLLINLLKDPNGDVRNWAAFAININKY------DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--------KRVLSV  227 (280)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHTC------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC--------GGGHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhhcc------CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC--------HhhHHH
Confidence            788889999999999999999988731      123578889999999999999999999998862        456778


Q ss_pred             HhhhCCCCCchHHHHHHHHHHHHHhhhccchhhhcccchHHhhhcc-CCCccccc
Q 006898          519 VINASKDRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSFMLYLN-VNNFNVGF  572 (626)
Q Consensus       519 l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~l~~-d~d~~vr~  572 (626)
                      |...++|++  ||..++.+|+.+..        +..+|.|. .++. +++.+++.
T Consensus       228 L~~~l~d~~--vr~~a~~aL~~i~~--------~~~~~~L~-~~l~~~~~~~~~~  271 (280)
T 1oyz_A          228 LCDELKKNT--VYDDIIEAAGELGD--------KTLLPVLD-TMLYKFDDNEIIT  271 (280)
T ss_dssp             HHHHHTSSS--CCHHHHHHHHHHCC--------GGGHHHHH-HHHTTSSCCHHHH
T ss_pred             HHHHhcCcc--HHHHHHHHHHhcCc--------hhhhHHHH-HHHhcCCCcHHHH
Confidence            888887754  99999999998743        36778888 6654 45555554

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=99.73  E-value=6.1e-14  Score=157.69  Aligned_cols=527  Identities=10%  Similarity=0.040  Sum_probs=323.9

Q ss_pred             cHHHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhccccccccCCchHHHHHHHHHHhccccccC---------C
Q 006898           10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVG---------G   80 (626)
Q Consensus        10 ~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~---------~   80 (626)
                      .+..+++...|+|...|  |-+.|..+ .. .|+ ....+...+.. .+.+.++|..++..+.+.+..--         .
T Consensus         6 ~l~~~L~~~~spd~~~r--Ae~~L~~~-~~-~p~-~~~~L~~il~~-~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~   79 (960)
T 1wa5_C            6 TVAKFLAESVIASTAKT--SERNLRQL-ET-QDG-FGLTLLHVIAS-TNLPLSTRLAGALFFKNFIKRKWVDENGNHLLP   79 (960)
T ss_dssp             HHHHHHHHTTSGGGHHH--HHHHHHHH-HT-STT-HHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSC
T ss_pred             HHHHHHHHhcCCCHHHH--HHHHHHHh-hc-CCC-HHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCC
Confidence            35566666778898888  88777766 22 222 22233333321 23467899999999987654210         0


Q ss_pred             cchhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCC---
Q 006898           81 VEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP---  157 (626)
Q Consensus        81 ~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~---  157 (626)
                      ++....+-..+...+.+++..+|..+..++..|+..--+ .-++.++|.+.+.+++.+...+..+..++..+++...   
T Consensus        80 ~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p-~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~  158 (960)
T 1wa5_C           80 ANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFP-DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLF  158 (960)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSC
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCc-cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence            111222222222222234588999999999999886444 2457788998888887777778888888888776432   


Q ss_pred             --hHHH-------HH----HHHHHHH---hcCCCCH---HHH------HHHHHhHHHHHHhhCccch---hhhHHHHHHH
Q 006898          158 --DILK-------TE----LRSIYTQ---LCQDDMP---MVR------RSAASNLGKFAATVEPAHL---KTDIMSIFED  209 (626)
Q Consensus       158 --~~~~-------~~----l~~~l~~---l~~d~~~---~vR------~~a~~~l~~l~~~~~~~~~---~~~ll~~l~~  209 (626)
                        ++..       ..    ++..+..   .+.++..   .+|      ..+++++..+...--++..   ...+.+.+..
T Consensus       159 ~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~  238 (960)
T 1wa5_C          159 RSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHK  238 (960)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHH
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Confidence              1111       11    2233322   2444322   233      3344555443321112111   2334455554


Q ss_pred             hhcC----------Cc-----hhHHHHHHHHHHHhhcccCc--hhhhhhhHHHHHHhcC-----CCCHHHHHHHHHHHHH
Q 006898          210 LTQD----------DQ-----DSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQ-----DKSWRVRYMVANQLYE  267 (626)
Q Consensus       210 l~~d----------~~-----~~vr~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~-----d~~~~vR~~a~~~l~~  267 (626)
                      .+..          ++     +.+|+.+++++..+.+..++  ..+.+.+++.+...+.     ..+..++..+++.+..
T Consensus       239 ~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~  318 (960)
T 1wa5_C          239 YLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTA  318 (960)
T ss_dssp             HHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHH
T ss_pred             HHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHH
Confidence            4421          11     35788889999888766554  2233444444444332     3456788888888877


Q ss_pred             HHHHhC-CC-----ccccchH-HHHHHhcC-----------------------CChHHHHHHHHHhHHHHHHhhChHHHH
Q 006898          268 LCEAVG-PE-----PTRMDLV-PAYVRLLR-----------------------DNEAEVRIAAAGKVTKFCRILNPELAI  317 (626)
Q Consensus       268 l~~~~~-~~-----~~~~~l~-~~l~~~l~-----------------------d~~~~vr~~a~~~l~~l~~~~~~~~~~  317 (626)
                      +++.-. ..     .....++ +.++..+.                       +.....|.+|...+..++...+ +.+.
T Consensus       319 ~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~~v~  397 (960)
T 1wa5_C          319 VTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-VLVT  397 (960)
T ss_dssp             HHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-HHHH
T ss_pred             HhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-hhHH
Confidence            653210 01     1112233 23332221                       1113578899999999998877 4455


Q ss_pred             HhhHHHHHHhcc------CCCHHHHHHHHHHHHhhhhhh-----cHH------HHHHhHHHHHHHhhcCC---CHHHHHH
Q 006898          318 QHILPCVKELSS------DSSQHVRSALASVIMGMAPLL-----GKD------ATIEQLLPIFLSLLKDE---FPDVRLN  377 (626)
Q Consensus       318 ~~l~~~l~~l~~------d~~~~vr~~~~~~l~~l~~~~-----~~~------~~~~~l~~~l~~~l~d~---~~~vr~~  377 (626)
                      +.+++.+.+.+.      +.+|+.|.+++.+++.++...     +..      .+.+.+...+...+.|+   .+-||..
T Consensus       398 ~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~  477 (960)
T 1wa5_C          398 NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVD  477 (960)
T ss_dssp             HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHH
Confidence            677777766655      678999999999999997532     111      22222334455566777   8999999


Q ss_pred             HHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC----------hh---hHHHHHHHHHHHH
Q 006898          378 IISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG----------VG---FFDDKLGALCMQW  444 (626)
Q Consensus       378 a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~----------~~---~~~~~l~p~l~~~  444 (626)
                      ++.+++.+.+.+.++. ...+++.+.+.+.|++.++|..++.++..+++...          .+   .+.+.+++.++.+
T Consensus       478 a~~~lg~~~~~~~~~~-l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~l  556 (960)
T 1wa5_C          478 AIKYIYTFRNQLTKAQ-LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIAL  556 (960)
T ss_dssp             HHHHHHHTGGGSCHHH-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCHHH-HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHH
Confidence            9999999999886544 47789999999999999999999999999887422          22   2345566667777


Q ss_pred             hcCCc-----hHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhh----hcC-CChHHHHHHHHHHHHhccccChH---
Q 006898          445 LQDKV-----YSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEM----INN-PHYLYRMTILRAISLLAPVMGSE---  509 (626)
Q Consensus       445 l~d~~-----~~VR~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~----l~~-~~~~vR~~a~~~l~~i~~~~~~~---  509 (626)
                      ++...     ......+..+++.++..+++..  +...+++.+...    .++ .+...+..++++++.++...+++   
T Consensus       557 l~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~  636 (960)
T 1wa5_C          557 ILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLP  636 (960)
T ss_dssp             HHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHH
T ss_pred             HHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHH
Confidence            66531     1134578888999888876542  223444444443    233 46678888999999998875543   


Q ss_pred             HhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhh
Q 006898          510 ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV  545 (626)
Q Consensus       510 ~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~  545 (626)
                      .+.+.++|.+...+.....+....+...++.+....
T Consensus       637 ~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~  672 (960)
T 1wa5_C          637 LLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS  672 (960)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc
Confidence            356788999888887777788888888888887664

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=99.73  E-value=2.7e-14  Score=160.49  Aligned_cols=402  Identities=11%  Similarity=0.073  Sum_probs=254.7

Q ss_pred             CCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccC
Q 006898          155 SAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE  234 (626)
Q Consensus       155 ~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~  234 (626)
                      ..+++.+..+...++..+.+++..||..++.+++.++..-.+ ..|+.++|.+.+.++++++..+..++.++..+.+...
T Consensus        77 ~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p-~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~  155 (960)
T 1wa5_C           77 LLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFP-DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWR  155 (960)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGT
T ss_pred             CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCc-cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence            345666777777777766666689999999999999987655 4678999999999988888889999999999988654


Q ss_pred             c-----hh------hhhhhH----HHHHH---hcCCCCH---HHH------HHHHHHHHHHHHHhCCCcc---ccchHHH
Q 006898          235 P-----QD------CVAHIL----PVIVN---FSQDKSW---RVR------YMVANQLYELCEAVGPEPT---RMDLVPA  284 (626)
Q Consensus       235 ~-----~~------~~~~i~----~~l~~---~~~d~~~---~vR------~~a~~~l~~l~~~~~~~~~---~~~l~~~  284 (626)
                      .     +.      ......    ..+..   .+.+...   .+|      ..+++++..+...--.+..   ....++.
T Consensus       156 ~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~  235 (960)
T 1wa5_C          156 PLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGI  235 (960)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHH
T ss_pred             HhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Confidence            2     10      111112    22222   2444322   233      2344444433211001111   1234455


Q ss_pred             HHHhcCC-----------Ch----HHHHHHHHHhHHHHHHhhChH--HHHHhhHHHHHHhcc-----CCCHHHHHHHHHH
Q 006898          285 YVRLLRD-----------NE----AEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSS-----DSSQHVRSALASV  342 (626)
Q Consensus       285 l~~~l~d-----------~~----~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~-----d~~~~vr~~~~~~  342 (626)
                      +.+.+..           .+    +.+|..+++++..+.+..+..  .+.+.+++.+.+.+.     ..+..++..+++.
T Consensus       236 ~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~f  315 (960)
T 1wa5_C          236 FHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSF  315 (960)
T ss_dssp             HHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHH
T ss_pred             HHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHH
Confidence            5554421           11    357888888888887654432  122334444433332     4567888888888


Q ss_pred             HHhhhhh------hcHHHHHHhHH-HHHHHhhc----C-------------------CCHHHHHHHHHhhHHHHhhhchh
Q 006898          343 IMGMAPL------LGKDATIEQLL-PIFLSLLK----D-------------------EFPDVRLNIISKLDQVNQVIGID  392 (626)
Q Consensus       343 l~~l~~~------~~~~~~~~~l~-~~l~~~l~----d-------------------~~~~vr~~a~~~L~~~~~~~~~~  392 (626)
                      +..+++.      +....+...++ +.++..+.    |                   ...++|.+|...|..++..++ +
T Consensus       316 l~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~  394 (960)
T 1wa5_C          316 LTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-V  394 (960)
T ss_dssp             HHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-H
T ss_pred             HHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-h
Confidence            8877642      11113444455 45554431    1                   123578899999999998887 4


Q ss_pred             hHHhhHHHHHHHHhc------CCChHHHHHHHHHHHHHHHhh-----Chh------hHHHHHHHHHHHHhcCC---chHH
Q 006898          393 LLSQSLLPAIVELAE------DRHWRVRLAIIEYIPLLASQL-----GVG------FFDDKLGALCMQWLQDK---VYSI  452 (626)
Q Consensus       393 ~~~~~i~~~l~~~~~------~~~~~~r~~~~~~l~~l~~~~-----~~~------~~~~~l~p~l~~~l~d~---~~~V  452 (626)
                      .....+++.+.+.+.      +.+|+.|.+++.+++.++...     +..      .+.+.+...+...+.|+   ++.|
T Consensus       395 ~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~v  474 (960)
T 1wa5_C          395 LVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIIL  474 (960)
T ss_dssp             HHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHH
T ss_pred             hHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCcee
Confidence            344566677666655      678999999999999998642     111      23333444455566777   8999


Q ss_pred             HHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccC----------hH---HhhhcHHHHH
Q 006898          453 RDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG----------SE---ITCSRLLPVV  519 (626)
Q Consensus       453 R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~----------~~---~~~~~~l~~l  519 (626)
                      |..|+++++.++..+.++ ....+++.+.+.+.|++..||..|+.++..+++...          .+   .+.+.+++.|
T Consensus       475 r~~a~~~lg~~~~~~~~~-~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L  553 (960)
T 1wa5_C          475 RVDAIKYIYTFRNQLTKA-QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNL  553 (960)
T ss_dssp             HHHHHHHHHHTGGGSCHH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHH
Confidence            999999999999887544 567788999998999999999999999999987422          22   3456667777


Q ss_pred             hhhCCCCC-----chHHHHHHHHHHHHHhhhccc--hhhhcccchHH
Q 006898          520 INASKDRV-----PNIKFNVAKVLQSLIPIVDQS--VSTFSVSPFSF  559 (626)
Q Consensus       520 ~~~l~d~~-----~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~  559 (626)
                      ..+++...     ......+..+++.++...++.  ++...+.+.+.
T Consensus       554 ~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~  600 (960)
T 1wa5_C          554 IALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFI  600 (960)
T ss_dssp             HHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHH
T ss_pred             HHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            77665531     113467888998888877653  33334444444

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=99.67  E-value=3.8e-14  Score=160.11  Aligned_cols=441  Identities=10%  Similarity=-0.003  Sum_probs=253.7

Q ss_pred             cchHHHHHHHHHHHHHHh----hcCh---hhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHH
Q 006898           98 EETCVRDKAVESLCRIGS----QMRE---SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQ  170 (626)
Q Consensus        98 ~~~~vR~~a~~~l~~i~~----~~~~---~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~  170 (626)
                      .++.+|..|+..|....+    .+++   ..+++.++..+.....+ ...+|...+.+++.++.+..+ .++++++.+..
T Consensus        52 ~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~-~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~  129 (971)
T 2x1g_F           52 KSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFAGG-PKIVLNRLCISLGAYIVHMLG-EWPGAIEEVIN  129 (971)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHTTC-C------HHHH
T ss_pred             CcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHccc-cccHHHHHHHH
Confidence            344555555555544332    1222   22333444444433322 234555555555554443222 44445555544


Q ss_pred             hcCCC------CHHHHHHHHHhHHHHHHhhC-c-------------cchhhhHHHHHHHhhcCCc--------hhHHHHH
Q 006898          171 LCQDD------MPMVRRSAASNLGKFAATVE-P-------------AHLKTDIMSIFEDLTQDDQ--------DSVRLLA  222 (626)
Q Consensus       171 l~~d~------~~~vR~~a~~~l~~l~~~~~-~-------------~~~~~~ll~~l~~l~~d~~--------~~vr~~a  222 (626)
                      .++.+      ++..+..+...|..+.+... .             ....+.+++.+...+.+.+        +.++..+
T Consensus       130 ~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~a  209 (971)
T 2x1g_F          130 TFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRA  209 (971)
T ss_dssp             HHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred             HHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHH
Confidence            44332      34455555555555553210 0             0112345555555554321        2789999


Q ss_pred             HHHHHHhhc--ccCchhhhhhhHHHHHHhc----------------CCCCHHHHHHHHHHHHHHHHHhCCC---ccccch
Q 006898          223 VEGCAALGK--LLEPQDCVAHILPVIVNFS----------------QDKSWRVRYMVANQLYELCEAVGPE---PTRMDL  281 (626)
Q Consensus       223 ~~~l~~l~~--~~~~~~~~~~i~~~l~~~~----------------~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l  281 (626)
                      ++++..+..  ..+.. ....+++.+.. +                .+.++.+|..+++++..+.......   .....+
T Consensus       210 l~~l~~~~~~~~ip~~-~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l  287 (971)
T 2x1g_F          210 VKCVGTWIKNIGYTIE-GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVL  287 (971)
T ss_dssp             HHHHHHHHHHSCCCGG-GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHH
T ss_pred             HHHHHHHHhhCCcCcc-ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHH
Confidence            999988776  34444 45566676554 2                1245789999999999988642111   011234


Q ss_pred             HHHHHH-------hcCCCh---HHHHHHHHHhHHHHHHh----hC---------hHHHHHhhHHHHHHhccC-----CCH
Q 006898          282 VPAYVR-------LLRDNE---AEVRIAAAGKVTKFCRI----LN---------PELAIQHILPCVKELSSD-----SSQ  333 (626)
Q Consensus       282 ~~~l~~-------~l~d~~---~~vr~~a~~~l~~l~~~----~~---------~~~~~~~l~~~l~~l~~d-----~~~  333 (626)
                      +|.+..       ...+.+   .+......+.+..+++.    +.         .......+++.+......     .++
T Consensus       288 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~  367 (971)
T 2x1g_F          288 IKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEE  367 (971)
T ss_dssp             HHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTC
T ss_pred             HHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcch
Confidence            444433       223334   26666666666666532    11         111223445555554433     467


Q ss_pred             HHHHHHHHHHHhhhhhh-c-----H--------HHHHHhHHHHHHHhhc---CC-----C-------HHHHHHHHHhhHH
Q 006898          334 HVRSALASVIMGMAPLL-G-----K--------DATIEQLLPIFLSLLK---DE-----F-------PDVRLNIISKLDQ  384 (626)
Q Consensus       334 ~vr~~~~~~l~~l~~~~-~-----~--------~~~~~~l~~~l~~~l~---d~-----~-------~~vr~~a~~~L~~  384 (626)
                      .++..++..+..+++.. +     +        ..+...+++.+...+.   |.     +       ...|..+...+..
T Consensus       368 ~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~  447 (971)
T 2x1g_F          368 SCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMY  447 (971)
T ss_dssp             TTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHH
Confidence            88888888888776522 1     0        1223345555555442   11     1       2567888888888


Q ss_pred             HHhhhchhhHHhhHHHHHHHHhcC-----CChHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHh-cCCchHHHHHH
Q 006898          385 VNQVIGIDLLSQSLLPAIVELAED-----RHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWL-QDKVYSIRDAA  456 (626)
Q Consensus       385 ~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~r~~~~~~l~~l~~~~~~~~--~~~~l~p~l~~~l-~d~~~~VR~~a  456 (626)
                      ++...+.+ ....+++.+.+.+..     .+|+.|.+++.+++.+++.+....  ..+.+++.+..+. .|+++.||..+
T Consensus       448 ~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a  526 (971)
T 2x1g_F          448 CYDVLNDY-ILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTA  526 (971)
T ss_dssp             HHTTCTTH-HHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHH
T ss_pred             HHHHHhHH-HHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHH
Confidence            88877733 335566666655543     799999999999999988765432  3345666443333 26789999999


Q ss_pred             HHHHHHHHHHhChH-HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChH--HhhhcHHHHHhhhCCC--CCchHH
Q 006898          457 ANNLKRLAEEFGPE-WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKD--RVPNIK  531 (626)
Q Consensus       457 ~~~l~~l~~~~~~~-~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~--~~~~~~l~~l~~~l~d--~~~~vR  531 (626)
                      +++++.+...++.. .....++|.+...+ +  +.++..|+.++..+++.++..  .+.+.++..+...+..  .+...+
T Consensus       527 ~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~  603 (971)
T 2x1g_F          527 LETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDS  603 (971)
T ss_dssp             HHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHH
Confidence            99999999887643 24566778887777 3  789999999999999877644  3456666667676665  356899


Q ss_pred             HHHHHHHHHHHhhhc
Q 006898          532 FNVAKVLQSLIPIVD  546 (626)
Q Consensus       532 ~~a~~~l~~i~~~~~  546 (626)
                      ..+.++++.++...+
T Consensus       604 ~~~~~ai~~i~~~~~  618 (971)
T 2x1g_F          604 VRLMFSIGKLMSLLR  618 (971)
T ss_dssp             HHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHhCC
Confidence            999999999988765

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=99.66  E-value=5.9e-13  Score=150.33  Aligned_cols=531  Identities=10%  Similarity=0.058  Sum_probs=311.8

Q ss_pred             cHHHHHHHhcCc------cHHHHHHHHhhHHHHHHhhC---h--------H---hhhhhhccccccc-c-CCc-------
Q 006898           10 PIAVLIDELKND------DIQLRLNSIRRLSTIARALG---E--------E---RTRKELIPFLSEN-N-DDD-------   60 (626)
Q Consensus        10 ~i~~l~~~l~s~------d~~~r~~a~~~l~~i~~~~~---~--------~---~~~~~l~~~l~~~-~-~~~-------   60 (626)
                      .+..+++.++++      ++..+..++..|..+.+-..   .        +   ...+.+++++.++ . ..+       
T Consensus       123 ~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~  202 (971)
T 2x1g_F          123 AIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEA  202 (971)
T ss_dssp             ---HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred             HHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccc
Confidence            355677777765      66778888888887653210   0        0   0123444444431 1 111       


Q ss_pred             hHHHHHHHHHHhccccc--cCCcchhhcchHHHhhh----h-----------cCcchHHHHHHHHHHHHHHhhcChh---
Q 006898           61 DEVLLAMAEELGVFIPY--VGGVEHAHVLLPPLETL----C-----------TVEETCVRDKAVESLCRIGSQMRES---  120 (626)
Q Consensus        61 ~~vr~~~~~~l~~~~~~--~~~~~~~~~l~~~l~~l----~-----------~~~~~~vR~~a~~~l~~i~~~~~~~---  120 (626)
                      .+++..+.++++.++.+  .+.. ....+++.+..+    .           .++++.+|..|++++..+...-.++   
T Consensus       203 ~~~~~~al~~l~~~~~~~~ip~~-~~~~ll~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~  281 (971)
T 2x1g_F          203 YSNMNRAVKCVGTWIKNIGYTIE-GCVTITAVLLEVVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYP  281 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCGG-GHHHHHHHHHHHHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCH
T ss_pred             hhHHHHHHHHHHHHHhhCCcCcc-ccccHHHHHHhhhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccH
Confidence            27899999999876662  3322 334555644432    0           1257789999999999998753221   


Q ss_pred             hHHHhHHHHHHH----H---hcCCc---cchhHHHhhHhHHhcCCCC--------------hHHHHHHHHHHHHhcCC--
Q 006898          121 DLVDWYIPLVKR----L---AAGEW---FTARVSACGLFHIAYPSAP--------------DILKTELRSIYTQLCQD--  174 (626)
Q Consensus       121 ~~~~~l~~~l~~----l---~~~~~---~~~r~~a~~~l~~~~~~~~--------------~~~~~~l~~~l~~l~~d--  174 (626)
                      .....++|.+..    .   ..+++   .......++++..+.....              ......+++.++.+...  
T Consensus       282 ~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~  361 (971)
T 2x1g_F          282 KTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPG  361 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCC
Confidence            111223333222    1   12223   2455566666665542211              12334556666665433  


Q ss_pred             ---CCHHHHHHHHHhHHHHHHhh-C------cc-------chhhhHHHHHHHhhc---CC-----c-------hhHHHHH
Q 006898          175 ---DMPMVRRSAASNLGKFAATV-E------PA-------HLKTDIMSIFEDLTQ---DD-----Q-------DSVRLLA  222 (626)
Q Consensus       175 ---~~~~vR~~a~~~l~~l~~~~-~------~~-------~~~~~ll~~l~~l~~---d~-----~-------~~vr~~a  222 (626)
                         .+..|+..++..+..+++.. .      ..       .+...+++.+...+.   |+     +       ...|..+
T Consensus       362 ~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~  441 (971)
T 2x1g_F          362 IYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDI  441 (971)
T ss_dssp             CTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHH
T ss_pred             CCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHH
Confidence               46778888998888877632 1      11       122234444333331   11     1       1467788


Q ss_pred             HHHHHHhhcccCchhhhhhhHHHHHHhcCC-----CCHHHHHHHHHHHHHHHHHhCCCc--cccchHHHHHHhc-CCChH
Q 006898          223 VEGCAALGKLLEPQDCVAHILPVIVNFSQD-----KSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLL-RDNEA  294 (626)
Q Consensus       223 ~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d-----~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l-~d~~~  294 (626)
                      ...+..++...+ +...+.+++.+...+..     .+|..|.+++.+++.+++......  ....+++.+..+. +|.++
T Consensus       442 ~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~  520 (971)
T 2x1g_F          442 SDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNV  520 (971)
T ss_dssp             HHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCH
T ss_pred             HHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCH
Confidence            888888888777 44566677777665543     789999999999999987655432  1234555444444 25689


Q ss_pred             HHHHHHHHhHHHHHHhhChH-HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHH--HHHHhHHHHHHHhhcC--
Q 006898          295 EVRIAAAGKVTKFCRILNPE-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKD--  369 (626)
Q Consensus       295 ~vr~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d--  369 (626)
                      .||..++.+++.+++.+... .+...+++.+...+ |  +.|+..++.++..+++.++..  .+.+.++..+...+..  
T Consensus       521 ~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~  597 (971)
T 2x1g_F          521 KLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGR  597 (971)
T ss_dssp             HHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCC
Confidence            99999999999999987643 44567777777666 3  678999999999998766543  3455667777777776  


Q ss_pred             CCHHHHHHHHHhhHHHHhhhchhhH---HhhHHHHHH----HHhcCC--ChHHHHHHHH---HHHHHHHhhChh------
Q 006898          370 EFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIV----ELAEDR--HWRVRLAIIE---YIPLLASQLGVG------  431 (626)
Q Consensus       370 ~~~~vr~~a~~~L~~~~~~~~~~~~---~~~i~~~l~----~~~~~~--~~~~r~~~~~---~l~~l~~~~~~~------  431 (626)
                      .+...+..++++++.+....+.+..   .+.+++.+.    +..+..  +...+...+.   .++.+...++..      
T Consensus       598 ~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~  677 (971)
T 2x1g_F          598 MKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQAT  677 (971)
T ss_dssp             SCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------
T ss_pred             CChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccc
Confidence            4688999999999999887652221   123333333    333332  3333444444   444444444321      


Q ss_pred             ---------hHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhhcCCChHHHHHHHHH
Q 006898          432 ---------FFDDKLGALCMQWLQD--KVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPHYLYRMTILRA  498 (626)
Q Consensus       432 ---------~~~~~l~p~l~~~l~d--~~~~VR~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~~~~~~vR~~a~~~  498 (626)
                               .+.+.++|.+...+.+  .+..|.+.++.+++.++..+|.+.  +...+++.+...++....   ..++..
T Consensus       678 ~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~---~~~l~l  754 (971)
T 2x1g_F          678 DQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCC---APTLEI  754 (971)
T ss_dssp             ------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CC---HHHHHH
T ss_pred             cccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCc---hHHHHH
Confidence                     1235577777777643  366899999999999998887652  234455555554444322   457888


Q ss_pred             HHHhccccChH--------HhhhcHHHHHhhhCCC-------CCchHHHHHHHHHHHHHhhhccc
Q 006898          499 ISLLAPVMGSE--------ITCSRLLPVVINASKD-------RVPNIKFNVAKVLQSLIPIVDQS  548 (626)
Q Consensus       499 l~~i~~~~~~~--------~~~~~~l~~l~~~l~d-------~~~~vR~~a~~~l~~i~~~~~~~  548 (626)
                      ++.++..++.+        .+...+...+...+..       ..++++......+..+..+....
T Consensus       755 ~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~  819 (971)
T 2x1g_F          755 SKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQV  819 (971)
T ss_dssp             HHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGG
T ss_pred             HHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHH
Confidence            88888877653        1122222223333332       36789999999999988776543

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=99.66  E-value=5.3e-13  Score=150.85  Aligned_cols=401  Identities=12%  Similarity=0.072  Sum_probs=238.1

Q ss_pred             cchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCC-----CCHHHHHHHHHhHHHHHHhhCc---------------cc
Q 006898          139 FTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQD-----DMPMVRRSAASNLGKFAATVEP---------------AH  198 (626)
Q Consensus       139 ~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d-----~~~~vR~~a~~~l~~l~~~~~~---------------~~  198 (626)
                      ..+|...+.+++.++.+.-+..++++++.+...+++     +++..+..+...|..+.+....               ..
T Consensus       117 ~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~  196 (963)
T 2x19_B          117 KIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAV  196 (963)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCSGG
T ss_pred             HHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHH
Confidence            334444555554444332122244444545444443     2444555566666655543210               12


Q ss_pred             hhhhHHHHHHHhhcCCch--hHHHHHHHHHHHhhcccCch-hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC
Q 006898          199 LKTDIMSIFEDLTQDDQD--SVRLLAVEGCAALGKLLEPQ-DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE  275 (626)
Q Consensus       199 ~~~~ll~~l~~l~~d~~~--~vr~~a~~~l~~l~~~~~~~-~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~  275 (626)
                      ..+.+++.+...+.+...  .++..+++++..... .+.. .....+++.+...+.  ++.+|..+++++..+.......
T Consensus       197 ~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~~~~~  273 (963)
T 2x19_B          197 ECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAALQ--DSELFDSSVEAIVNAISQPDAQ  273 (963)
T ss_dssp             GHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHTT--STTTHHHHHHHHHHHHTCTTGG
T ss_pred             HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHhC--CchHHHHHHHHHHHHHcccccc
Confidence            234566777777665432  478888888877665 3321 122556777766664  4668899999998887532211


Q ss_pred             cc---ccchHHHHHHh-------cCCChHHHHHHHHHhHHHHHHhhC--------hHHHHHhhHHHHHHhccC-----CC
Q 006898          276 PT---RMDLVPAYVRL-------LRDNEAEVRIAAAGKVTKFCRILN--------PELAIQHILPCVKELSSD-----SS  332 (626)
Q Consensus       276 ~~---~~~l~~~l~~~-------l~d~~~~vr~~a~~~l~~l~~~~~--------~~~~~~~l~~~l~~l~~d-----~~  332 (626)
                      ..   ...+++.+...       ..+.+.+......+.+..+++...        .......++..+.+...+     .+
T Consensus       274 ~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~  353 (963)
T 2x19_B          274 RYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVN  353 (963)
T ss_dssp             GCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTT
T ss_pred             cCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCCCCch
Confidence            11   11223322221       222334455555565555554211        111223455666655554     35


Q ss_pred             HHHHHHHHHHHHhhhhhhc----------H---HHHHHhHHHHHHHhhcCCC---------------HHHHHHHHHhhHH
Q 006898          333 QHVRSALASVIMGMAPLLG----------K---DATIEQLLPIFLSLLKDEF---------------PDVRLNIISKLDQ  384 (626)
Q Consensus       333 ~~vr~~~~~~l~~l~~~~~----------~---~~~~~~l~~~l~~~l~d~~---------------~~vr~~a~~~L~~  384 (626)
                      +.+...++..+..+++...          .   ..+...+++.+...+..++               .+.|..+...|..
T Consensus       354 ~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~  433 (963)
T 2x19_B          354 ETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMY  433 (963)
T ss_dssp             CGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHH
Confidence            5666666777666655220          0   1123345555554442111               1346777778888


Q ss_pred             HHhhhchhhHHhhHHHHHHHHh----cCCChHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcCCchHHHHHHHH
Q 006898          385 VNQVIGIDLLSQSLLPAIVELA----EDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKVYSIRDAAAN  458 (626)
Q Consensus       385 ~~~~~~~~~~~~~i~~~l~~~~----~~~~~~~r~~~~~~l~~l~~~~~~~--~~~~~l~p~l~~~l~d~~~~VR~~a~~  458 (626)
                      ++...+.+.+ +.+++.+.+.+    .+.+|+.|.+++.+++.+++.+...  .+...+++.+.. +.++++.||..+++
T Consensus       434 ~~~~~~~~~l-~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~-l~~~~~~vr~~~~~  511 (963)
T 2x19_B          434 VYEMLGAELL-SNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPR-ISISNVQLADTVMF  511 (963)
T ss_dssp             HHHHHTHHHH-HHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG-SCCCSHHHHHHHHH
T ss_pred             HHHHccHHHH-HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh-CCCCcHHHHHHHHH
Confidence            8777775433 55666666666    6679999999999999999876542  233455554433 34467889999999


Q ss_pred             HHHHHHHHhChH-HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChH--HhhhcHHHHHhhhCCC--CCchHHHH
Q 006898          459 NLKRLAEEFGPE-WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKD--RVPNIKFN  533 (626)
Q Consensus       459 ~l~~l~~~~~~~-~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~--~~~~~~l~~l~~~l~d--~~~~vR~~  533 (626)
                      +++.+...++.. .....+++.+.+.+.+  +.++..|+.++..+++.++..  .+.+.++..+..++..  -....|..
T Consensus       512 ~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~  589 (963)
T 2x19_B          512 TIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMW  589 (963)
T ss_dssp             HHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred             HHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHH
Confidence            999999876532 3567788888887765  789999999999999876543  2455666666666653  35689999


Q ss_pred             HHHHHHHHHhhhc
Q 006898          534 VAKVLQSLIPIVD  546 (626)
Q Consensus       534 a~~~l~~i~~~~~  546 (626)
                      +.++++.++...+
T Consensus       590 ~~eai~~i~~~~~  602 (963)
T 2x19_B          590 LMQALGFLLSALQ  602 (963)
T ss_dssp             HHHHHHHHHTTSC
T ss_pred             HHHHHHHHHhcCC
Confidence            9999999987765

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=99.65  E-value=9.7e-13  Score=149.19  Aligned_cols=403  Identities=9%  Similarity=0.001  Sum_probs=248.3

Q ss_pred             chhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc---------------c---chhh
Q 006898          140 TARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---------------A---HLKT  201 (626)
Q Consensus       140 ~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---------------~---~~~~  201 (626)
                      .+|...+.+++.++.+.-+..++++++.+...++ .+...+..+...|..+.+....               +   ...+
T Consensus       115 ~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~  193 (1049)
T 3m1i_C          115 NLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFE  193 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHH
Confidence            3455555555554443222344455555555554 3444455555555555543221               0   0123


Q ss_pred             hHHHHHHHhhcCC-chhHHHHHHHHHHHhhcccCch-hhhhhhHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHhCCCc--
Q 006898          202 DIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEPQ-DCVAHILPVIV-NFSQDKSWRVRYMVANQLYELCEAVGPEP--  276 (626)
Q Consensus       202 ~ll~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~-~~~~~i~~~l~-~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--  276 (626)
                      .+++.+..++.+. +..++..+++++..+....+.. ...+.+++.+. .+..  ++.+|..+++++..+...--...  
T Consensus       194 ~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~--~~~~~~~a~~~L~~i~~~~~~~~~~  271 (1049)
T 3m1i_C          194 QIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDND  271 (1049)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHHCCCCTTCH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhCC--CHhHHHHHHHHHHHHHhCCCCcchh
Confidence            3455555555443 4678999999998887766542 23345666655 3332  67899999999988876521111  


Q ss_pred             -cccc---hHHHHHH------------------hcCCChHHHHHHHHHhHHHHHHhh------C--hHHHHHhhHHHHHH
Q 006898          277 -TRMD---LVPAYVR------------------LLRDNEAEVRIAAAGKVTKFCRIL------N--PELAIQHILPCVKE  326 (626)
Q Consensus       277 -~~~~---l~~~l~~------------------~l~d~~~~vr~~a~~~l~~l~~~~------~--~~~~~~~l~~~l~~  326 (626)
                       ....   +++.++.                  ...|.+.+......+.+..+++..      +  .......+++.+..
T Consensus       272 ~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~  351 (1049)
T 3m1i_C          272 LIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQ  351 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Confidence             0111   1111121                  113455666666666665554421      1  11223456777777


Q ss_pred             hccCCCHHHHHHHHHHHHhhhhhh-----cH---HHHHHhHHHHHHHhhcC---------C----------C---HHHHH
Q 006898          327 LSSDSSQHVRSALASVIMGMAPLL-----GK---DATIEQLLPIFLSLLKD---------E----------F---PDVRL  376 (626)
Q Consensus       327 l~~d~~~~vr~~~~~~l~~l~~~~-----~~---~~~~~~l~~~l~~~l~d---------~----------~---~~vr~  376 (626)
                      ....++..++..+++.+..++...     ..   ..+...+++.++..+.-         +          +   ...|.
T Consensus       352 ~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~  431 (1049)
T 3m1i_C          352 LSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYK  431 (1049)
T ss_dssp             HHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHH
T ss_pred             HHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHH
Confidence            667778899999998888877622     11   23455566766665421         0          1   14466


Q ss_pred             HHHHhhHHHHhhhchhhHHhhHHHHHHHHhc--CCChHHHHHHHHHHHHHHHhhChh---hHHHHHHHHHHHHhc-----
Q 006898          377 NIISKLDQVNQVIGIDLLSQSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLQ-----  446 (626)
Q Consensus       377 ~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~-----  446 (626)
                      .+..+|..++...+. .....+.+.+.+.+.  +.+|+.|.+++.+++.++..++..   .+...+++.+..+..     
T Consensus       432 ~~~~~L~~l~~~~~~-~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~  510 (1049)
T 3m1i_C          432 SEREVLVYLTHLNVI-DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGK  510 (1049)
T ss_dssp             HHHHHHHHHHHHCHH-HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSH
T ss_pred             HHHHHHHHHHccCHH-HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccc
Confidence            777778777755443 333556666666664  468999999999999998766543   234556666655432     


Q ss_pred             CCchHHHHHHHHHHHHHHHHhChH-HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChH----------HhhhcH
Q 006898          447 DKVYSIRDAAANNLKRLAEEFGPE-WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE----------ITCSRL  515 (626)
Q Consensus       447 d~~~~VR~~a~~~l~~l~~~~~~~-~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~----------~~~~~~  515 (626)
                      |+.+.||..++++++.+...+... .....+++.+.+.+.++++.+|..|+.++.++++.++..          .+.+.+
T Consensus       511 ~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~i  590 (1049)
T 3m1i_C          511 DNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTI  590 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHH
Confidence            456667777999999888765432 245667888888889999999999999999999887654          335666


Q ss_pred             HHHHhhhCCCCCchHHHHHHHHHHHHHhhhc
Q 006898          516 LPVVINASKDRVPNIKFNVAKVLQSLIPIVD  546 (626)
Q Consensus       516 l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~  546 (626)
                      +..+...+.+....-+....++++.++...+
T Consensus       591 l~~l~~~~~~~~~~~~~~~~eai~~ii~~~~  621 (1049)
T 3m1i_C          591 IRDIQKTTADLQPQQVHTFYKACGIIISEER  621 (1049)
T ss_dssp             HHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence            6666677777666677888899999988776

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=99.65  E-value=6.2e-12  Score=142.10  Aligned_cols=522  Identities=12%  Similarity=0.091  Sum_probs=316.6

Q ss_pred             cHHHHHHH-hcCccHHHHHHHHhhHHHHHHhhChHhhhhhhccccccccCCchHHHHHHHHHHhccccc----cCCc---
Q 006898           10 PIAVLIDE-LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGV---   81 (626)
Q Consensus        10 ~i~~l~~~-l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~----~~~~---   81 (626)
                      .+..+++. ..+.|++.|..|-+.|..+-..  |+ .+..+..++.  .+.+++||..++..+.+.+..    ++.+   
T Consensus        25 ~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~--p~-~~~~~~~lL~--~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~   99 (963)
T 2x19_B           25 NVEKALHQLYYDPNIENKNLAQKWLMQAQVS--PQ-AWHFSWQLLQ--PDKVPEIQYFGASALHIKISRYWSDIPTDQYE   99 (963)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHS--TT-HHHHHHHHTS--TTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--HH-HHHHHHHHhc--CCCchHHHHHHHHHHHHHHHhCHHhCCHHHHH
Confidence            35566666 4468999999999999887332  21 2333333333  256889999999999876542    1211   


Q ss_pred             chhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcC-----CccchhHHHhhHhHHhcC--
Q 006898           82 EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAG-----EWFTARVSACGLFHIAYP--  154 (626)
Q Consensus        82 ~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~-----~~~~~r~~a~~~l~~~~~--  154 (626)
                      ...+.++..+.... +.+..||.....++..|++..-++. ++.+++.+...+++     .+...+..+..++..+.+  
T Consensus       100 ~ir~~ll~~l~~~~-~~~~~ir~kl~~~la~i~~~~~p~~-Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~  177 (963)
T 2x19_B          100 SLKAQLFTQITRFA-SGSKIVLTRLCVALASLALSMMPDA-WPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEF  177 (963)
T ss_dssp             HHHHHHHHHHHHTT-TSCHHHHHHHHHHHHHHHHHHTTTT-STTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhCccc-cchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHH
Confidence            12344455544432 2357899999999999988654433 45677777666654     133355556655554432  


Q ss_pred             --C-C--------C---hHHHHHHHHHHHHhcCCCC--HHHHHHHHHhHHHHHHhhCcc-chhhhHHHHHHHhhcCCchh
Q 006898          155 --S-A--------P---DILKTELRSIYTQLCQDDM--PMVRRSAASNLGKFAATVEPA-HLKTDIMSIFEDLTQDDQDS  217 (626)
Q Consensus       155 --~-~--------~---~~~~~~l~~~l~~l~~d~~--~~vR~~a~~~l~~l~~~~~~~-~~~~~ll~~l~~l~~d~~~~  217 (626)
                        . .        .   ....+.+++.+..++.+.+  ..++..+++++..+.. .+.. ...+.+++.+.+.+.  +++
T Consensus       178 ~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~--~~~  254 (963)
T 2x19_B          178 QTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAALQ--DSE  254 (963)
T ss_dssp             TTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHTT--STT
T ss_pred             hcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHhC--Cch
Confidence              1 0        0   1245677788887776543  2488888998887776 3332 122567787777774  578


Q ss_pred             HHHHHHHHHHHhhcccCchh---hhhhhHHHHH-------HhcCCCCHHHHHHHHHHHHHHHHHhCCCc--------ccc
Q 006898          218 VRLLAVEGCAALGKLLEPQD---CVAHILPVIV-------NFSQDKSWRVRYMVANQLYELCEAVGPEP--------TRM  279 (626)
Q Consensus       218 vr~~a~~~l~~l~~~~~~~~---~~~~i~~~l~-------~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--------~~~  279 (626)
                      +|..|++++..+........   ....+++.+.       ....+.+.......++.+..++.......        ...
T Consensus       255 ~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~  334 (963)
T 2x19_B          255 LFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFL  334 (963)
T ss_dssp             THHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             HHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHH
Confidence            89999999999887543211   2222223222       12223344455566677766654321111        112


Q ss_pred             chHHHHHHhcCC-----ChHHHHHHHHHhHHHHHHhhC-------hH------HHHHhhHHHHHHhccCC----------
Q 006898          280 DLVPAYVRLLRD-----NEAEVRIAAAGKVTKFCRILN-------PE------LAIQHILPCVKELSSDS----------  331 (626)
Q Consensus       280 ~l~~~l~~~l~d-----~~~~vr~~a~~~l~~l~~~~~-------~~------~~~~~l~~~l~~l~~d~----------  331 (626)
                      .+++.++....+     .+++++..++..+..+++...       ..      .+...+++.+...+..+          
T Consensus       335 ~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~  414 (963)
T 2x19_B          335 ALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSS  414 (963)
T ss_dssp             HHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCH
T ss_pred             HHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCCh
Confidence            345555555553     345667677776666665221       00      11223333333222111          


Q ss_pred             ----CH-HHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhh----cCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHH
Q 006898          332 ----SQ-HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL----KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAI  402 (626)
Q Consensus       332 ----~~-~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l----~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l  402 (626)
                          .+ ..|.++..++..++...+.+ ..+.+.+.+...+    .+.++..+.+++.+++.+.+....+.  ...++.+
T Consensus       415 de~~~~~~~r~~~~~~L~~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~--~~~l~~l  491 (963)
T 2x19_B          415 DEKEQFRIYRVDISDTLMYVYEMLGAE-LLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNY--SDVVPGL  491 (963)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSC--CSHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHccHH-HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchh--hHHHHHH
Confidence                11 34777888888888777743 4456666676667    66788999999999999987765422  2233333


Q ss_pred             HHHh---cCCChHHHHHHHHHHHHHHHhhChh-hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHH--Hhhhh
Q 006898          403 VELA---EDRHWRVRLAIIEYIPLLASQLGVG-FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--AMQHI  476 (626)
Q Consensus       403 ~~~~---~~~~~~~r~~~~~~l~~l~~~~~~~-~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~i  476 (626)
                      ...+   .+++..+|..++.+++.+++.++.. .+...+++.++..+++  +.||..|+.++..++...+...  ..+.+
T Consensus       492 ~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~i  569 (963)
T 2x19_B          492 IGLIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANI  569 (963)
T ss_dssp             HHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHH
T ss_pred             HHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            3332   4467889999999999998865432 3445677888888876  7899999999999998765431  23556


Q ss_pred             HHHHHhhhcC--CChHHHHHHHHHHHHhccccChH---HhhhcHHHHHhhhC----C-CCCchHHH---HHHHHHHHHHh
Q 006898          477 TPQVLEMINN--PHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINAS----K-DRVPNIKF---NVAKVLQSLIP  543 (626)
Q Consensus       477 l~~l~~~l~~--~~~~vR~~a~~~l~~i~~~~~~~---~~~~~~l~~l~~~l----~-d~~~~vR~---~a~~~l~~i~~  543 (626)
                      +..+.+++..  -+...|..+.++++.++...+.+   .+...+++.+...+    + +.+++.+.   ....+|+.+..
T Consensus       570 l~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~  649 (963)
T 2x19_B          570 VAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFT  649 (963)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence            6666666654  35789999999999998877622   23445555544432    2 22445544   45666666666


Q ss_pred             hhc
Q 006898          544 IVD  546 (626)
Q Consensus       544 ~~~  546 (626)
                      .++
T Consensus       650 ~~~  652 (963)
T 2x19_B          650 TLD  652 (963)
T ss_dssp             HCC
T ss_pred             HcC
Confidence            654

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.64  E-value=1.7e-14  Score=130.41  Aligned_cols=185  Identities=22%  Similarity=0.219  Sum_probs=138.8

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhh
Q 006898          162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAH  241 (626)
Q Consensus       162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  241 (626)
                      ....+.+++.++|+++.+|..++.+|+.+..        ...++.+...+.|+++.+|..++.+|+.+..        +.
T Consensus        13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------~~   76 (201)
T 3ltj_A           13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ER   76 (201)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GG
T ss_pred             CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HH
Confidence            4556677778888888888888888887532        2356677777788888888888888877652        34


Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhH
Q 006898          242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHIL  321 (626)
Q Consensus       242 i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  321 (626)
                      .++.+...+.|+++.||..++.+++.+.        ....++.+..+++|+++.||..++.+|+.+..        ...+
T Consensus        77 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~  140 (201)
T 3ltj_A           77 AVEPLIKALKDEDGWVRQSAAVALGQIG--------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAV  140 (201)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------GGGH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhC--------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHH
Confidence            5677777888888888888888887754        23567778888888888888888888887753        3456


Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHH
Q 006898          322 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN  386 (626)
Q Consensus       322 ~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~  386 (626)
                      +.+..+++|+++.||..++.+++.+..        +..++.+..+++|+++.||..|..+|+.+.
T Consensus       141 ~~L~~~l~d~~~~vr~~A~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          141 EPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            777777888888888888888887742        345666777778888888888888887653

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.64  E-value=1.3e-14  Score=132.40  Aligned_cols=184  Identities=21%  Similarity=0.214  Sum_probs=124.6

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhH
Q 006898          164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHIL  243 (626)
Q Consensus       164 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~  243 (626)
                      .++.+...++|+++.+|..++..|+.+..        +..++.+...+.|+++.+|..++.+|+.+..        +..+
T Consensus        20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~   83 (211)
T 3ltm_A           20 KVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ERAV   83 (211)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HHHH
Confidence            34555566677778888887777776532        2456666777777777788877777776642        3456


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHH
Q 006898          244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPC  323 (626)
Q Consensus       244 ~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~  323 (626)
                      +.+...+.|+++.||..++.+++.+.        ....++.+..+++|+++.||..++.+|+.+..        +..++.
T Consensus        84 ~~L~~~l~~~~~~vr~~a~~aL~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~  147 (211)
T 3ltm_A           84 EPLIKALKDEDGWVRQSAAVALGQIG--------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVEP  147 (211)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhC--------cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHHHH
Confidence            66667777777778877777777653        23466777777777777777777777777643        334666


Q ss_pred             HHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHh
Q 006898          324 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ  387 (626)
Q Consensus       324 l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~  387 (626)
                      +.++++|+++.||..++.+++.+..        +..++.+..+++|+++.||..|..+|..+..
T Consensus       148 L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~  203 (211)
T 3ltm_A          148 LIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKS  203 (211)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHC---
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence            6777777777777777777777642        3455666667777777777777777776644

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.63  E-value=2.5e-14  Score=129.32  Aligned_cols=187  Identities=21%  Similarity=0.223  Sum_probs=141.6

Q ss_pred             chhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcc
Q 006898          198 HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT  277 (626)
Q Consensus       198 ~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~  277 (626)
                      .+.+...+.+.+.++|+++.+|..++..|+.+..        +..++.+...+.|+++.+|..++.+++.+.        
T Consensus        10 ~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~--------   73 (201)
T 3ltj_A           10 HTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIG--------   73 (201)
T ss_dssp             CCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------
T ss_pred             ccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------
Confidence            3445677888888888999999988888887652        245677777788888889988888888764        


Q ss_pred             ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHH
Q 006898          278 RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIE  357 (626)
Q Consensus       278 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~  357 (626)
                      ....++.+..+++|+++.+|..|+.+|+.+..        +..++.+..+++|+++.||..++.+++.+..        .
T Consensus        74 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~  137 (201)
T 3ltj_A           74 DERAVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------E  137 (201)
T ss_dssp             CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------G
T ss_pred             CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------H
Confidence            23567888888888888899988888887653        3456777777788888888888888888752        2


Q ss_pred             hHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 006898          358 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL  424 (626)
Q Consensus       358 ~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l  424 (626)
                      ..++.+..+++|+++.||..|+.+|+.+..        ...++.+.++++|+++.+|..+.+++..+
T Consensus       138 ~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l  196 (201)
T 3ltj_A          138 RAVEPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETH  196 (201)
T ss_dssp             GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            456777888888888888888888888732        34566677777777777777777776654

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.63  E-value=2.2e-14  Score=130.79  Aligned_cols=183  Identities=21%  Similarity=0.218  Sum_probs=100.7

Q ss_pred             hHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccch
Q 006898          202 DIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDL  281 (626)
Q Consensus       202 ~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l  281 (626)
                      ..++.+...++|+++.+|..++..|+.+..        +..++.+...+.|+++.||..++.+++.+.        ....
T Consensus        19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~--------~~~~   82 (211)
T 3ltm_A           19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIG--------DERA   82 (211)
T ss_dssp             GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC--------CGGG
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------CHHH
Confidence            345555556666666666666666665442        234555555666666666666666666543        1344


Q ss_pred             HHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHH
Q 006898          282 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLP  361 (626)
Q Consensus       282 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~  361 (626)
                      ++.+..+++|+++.+|..++.+|+.+..        +..++.+.++++|+++.||..++.+++.+..        +..++
T Consensus        83 ~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~  146 (211)
T 3ltm_A           83 VEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVE  146 (211)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHHH
Confidence            5666666666666666666666665532        2334555555566666666666666655532        12344


Q ss_pred             HHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 006898          362 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL  424 (626)
Q Consensus       362 ~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l  424 (626)
                      .+..+++|+++.||..++.+|+.+..        ...++.+.++++|+++.+|..+.+++..+
T Consensus       147 ~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~  201 (211)
T 3ltm_A          147 PLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETH  201 (211)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            55555556666666666666655521        23444444444455555555555554444

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=99.61  E-value=6.2e-14  Score=130.58  Aligned_cols=185  Identities=15%  Similarity=0.168  Sum_probs=136.6

Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCh---HHHHHhhHHHHHHhcc-CCCHHHHHHHHHHHHhhhhhhcHH--H
Q 006898          281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---ELAIQHILPCVKELSS-DSSQHVRSALASVIMGMAPLLGKD--A  354 (626)
Q Consensus       281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~-d~~~~vr~~~~~~l~~l~~~~~~~--~  354 (626)
                      +-+.+.+.++|.+|..|.+++..+..+++..+.   ..+ ..+++.+...+. |++..||..++.+++.++..++..  .
T Consensus        16 l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~   94 (242)
T 2qk2_A           16 MPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN   94 (242)
T ss_dssp             SCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred             CCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            333445555566666666666666665554211   111 345666666663 777777777777777777766653  3


Q ss_pred             HHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChh---
Q 006898          355 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---  431 (626)
Q Consensus       355 ~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---  431 (626)
                      +...++|.+...+.|.++.||.++..++..++...+.    +.++|.+...+++++|++|..++.+++.+....++.   
T Consensus        95 ~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~----~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~  170 (242)
T 2qk2_A           95 YASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL----EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALN  170 (242)
T ss_dssp             HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCcc
Confidence            4567888888888888888998888888888776553    467888888889999999999999999987766533   


Q ss_pred             -hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChH
Q 006898          432 -FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE  470 (626)
Q Consensus       432 -~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~  470 (626)
                       .+.+.++|.+..+++|+++.||.+|..+++.++..+|.+
T Consensus       171 ~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~  210 (242)
T 2qk2_A          171 KKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDK  210 (242)
T ss_dssp             HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHH
Confidence             244678999999999999999999999999999999865

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=99.60  E-value=6.4e-14  Score=130.46  Aligned_cols=191  Identities=15%  Similarity=0.119  Sum_probs=132.4

Q ss_pred             hhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC--CccccchHHHHHHhcC-CChHHHHHHHHHhHHHHHHhhChH
Q 006898          238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPE  314 (626)
Q Consensus       238 ~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~  314 (626)
                      ....+-+.+...++|++|..|..++..|..+....+.  ......+++.+...+. |.+..||..++.+++.++..++..
T Consensus        12 i~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~   91 (242)
T 2qk2_A           12 ILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKR   91 (242)
T ss_dssp             CGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGG
T ss_pred             ccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhh
Confidence            3344444555666777788888777777777765332  1112356777777773 777788888888888877766653


Q ss_pred             --HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchh
Q 006898          315 --LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID  392 (626)
Q Consensus       315 --~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~  392 (626)
                        .+.+.++|.+...+.|++..||.++..++..+....+    .+.++|.+...+++.++.+|..++..++.+....+++
T Consensus        92 ~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~  167 (242)
T 2qk2_A           92 FSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPT  167 (242)
T ss_dssp             GHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGG
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCC
Confidence              3446677777777778888888888887777776544    3456777777777778888888888888776554432


Q ss_pred             ----hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhh
Q 006898          393 ----LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF  432 (626)
Q Consensus       393 ----~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~  432 (626)
                          .+...++|.+.+.++|+++.+|.++.++++.++...|.+.
T Consensus       168 ~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~  211 (242)
T 2qk2_A          168 ALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKA  211 (242)
T ss_dssp             GCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHH
T ss_pred             CccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHH
Confidence                2235677788888888888888888888888887777643

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=99.53  E-value=5e-13  Score=123.78  Aligned_cols=197  Identities=11%  Similarity=0.191  Sum_probs=160.1

Q ss_pred             chhhhHHHHHHHhhcCCchhHHHHHHHHHHH-hhcccCc----hhhhhhhHHHHHHhc-CCCCHHHHHHHHHHHHHHHHH
Q 006898          198 HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAA-LGKLLEP----QDCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEA  271 (626)
Q Consensus       198 ~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~-l~~~~~~----~~~~~~i~~~l~~~~-~d~~~~vR~~a~~~l~~l~~~  271 (626)
                      .+.+.+-+-|...+.+.+|.-|..++..+.. +.+..++    ......++..+.+.+ .|.+..||..++++++.++..
T Consensus        12 ~i~~kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~   91 (249)
T 2qk1_A           12 TILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDK   91 (249)
T ss_dssp             CCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhCChhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence            3344455556677889999999999999999 8765433    112245677888888 799999999999999999999


Q ss_pred             hC-CCcc---ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHH---HHHhhHHHHHHhccCCCHHHHHHHHHHHH
Q 006898          272 VG-PEPT---RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL---AIQHILPCVKELSSDSSQHVRSALASVIM  344 (626)
Q Consensus       272 ~~-~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~l~~d~~~~vr~~~~~~l~  344 (626)
                      ++ ..+.   ...++|.++..++|..+.||.++..++..+++.+++..   ..+.+++.+...+++++|.+|..++.++.
T Consensus        92 l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~  171 (249)
T 2qk1_A           92 LKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFN  171 (249)
T ss_dssp             HCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred             cccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            98 5543   24689999999999999999999999999999874321   13567888888889999999999999999


Q ss_pred             hhhhhhcH---H--HHH-HhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhH
Q 006898          345 GMAPLLGK---D--ATI-EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL  394 (626)
Q Consensus       345 ~l~~~~~~---~--~~~-~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~  394 (626)
                      .+....+.   .  .+. +.++|.+..+++|.++.||.+|..+++.++..+|.+.+
T Consensus       172 ~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~  227 (249)
T 2qk1_A          172 ASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTF  227 (249)
T ss_dssp             HHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGG
T ss_pred             HHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHH
Confidence            99877663   2  356 78999999999999999999999999999999997543

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.53  E-value=9.8e-11  Score=122.01  Aligned_cols=445  Identities=9%  Similarity=0.067  Sum_probs=285.9

Q ss_pred             CcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHh----cCCccchhHHHhhHhHHhcCCCChHH-----HHHHHHH
Q 006898           97 VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLA----AGEWFTARVSACGLFHIAYPSAPDIL-----KTELRSI  167 (626)
Q Consensus        97 ~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~----~~~~~~~r~~a~~~l~~~~~~~~~~~-----~~~l~~~  167 (626)
                      .+.++||..+.-++.++.+..+ +...+.+..++..+.    .+.....-..+...+..+++..++-.     .+...+.
T Consensus       181 ~~~~~~~~~~l~i~~~~~~~~~-~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~  259 (778)
T 3opb_A          181 ISEDEVKSMMLIIFAELQSSFQ-KDFDKAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKL  259 (778)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHH
T ss_pred             cChhhhHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHHH
Confidence            4567899888888877777665 344455555555444    22233445567777777777766421     1233445


Q ss_pred             HHHhc-CCCCHHHHHHHHHhHHHHHHhhC-ccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc-hhhhhhhHH
Q 006898          168 YTQLC-QDDMPMVRRSAASNLGKFAATVE-PAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QDCVAHILP  244 (626)
Q Consensus       168 l~~l~-~d~~~~vR~~a~~~l~~l~~~~~-~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~i~~  244 (626)
                      +.... ...+..+..++++.+...+..-. .+....+.++.+.+.+++  ..+|..|+-.|..+....+. ......+.+
T Consensus       260 l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La~  337 (778)
T 3opb_A          260 FKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLSE  337 (778)
T ss_dssp             HHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHHH
T ss_pred             HHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHHH
Confidence            55444 44566677777766665543211 123345566778887765  47888888888887765543 222345777


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHhC--CCcc-ccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHHhhC--------
Q 006898          245 VIVNFSQDKSWRVRYMVANQLYELCEAVG--PEPT-RMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILN--------  312 (626)
Q Consensus       245 ~l~~~~~d~~~~vR~~a~~~l~~l~~~~~--~~~~-~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~--------  312 (626)
                      .+.+.+.+++...|..+++.|..+.-.-.  .... ...+++.++.++++ .+..+..+++..+..++....        
T Consensus       338 ~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~  417 (778)
T 3opb_A          338 IFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXX  417 (778)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC-
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhh
Confidence            77777777666668888888876642100  0000 12345555555553 334454555555444433111        


Q ss_pred             ------------h---------------------HHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcH-H-HHHH
Q 006898          313 ------------P---------------------ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK-D-ATIE  357 (626)
Q Consensus       313 ------------~---------------------~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~-~-~~~~  357 (626)
                                  +                     ......++|.+..++.+.++.+|..+++++..++..-.. . ....
T Consensus       418 l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqq  497 (778)
T 3opb_A          418 XXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQ  497 (778)
T ss_dssp             -----------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHT
T ss_pred             hhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence                        0                     001134678888999999999999999999999854321 2 2334


Q ss_pred             hHHHHHHHhhcCCCHH---HHHHHHHhhHHHHhhhchhhHH-----hhHHHHHHHHhcC-CCh-------------HHHH
Q 006898          358 QLLPIFLSLLKDEFPD---VRLNIISKLDQVNQVIGIDLLS-----QSLLPAIVELAED-RHW-------------RVRL  415 (626)
Q Consensus       358 ~l~~~l~~~l~d~~~~---vr~~a~~~L~~~~~~~~~~~~~-----~~i~~~l~~~~~~-~~~-------------~~r~  415 (626)
                      ..++.++.++.+....   +|..|+.+|.++.....+....     ...+|.|.+++.. +..             ..+.
T Consensus       498 Gal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~f  577 (778)
T 3opb_A          498 GAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNY  577 (778)
T ss_dssp             THHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHH
T ss_pred             CCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHH
Confidence            5788889998876544   8999999999988554433221     2678899999872 221             3377


Q ss_pred             HHHHHHHHHHHhhC-------hhhHH-HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh---HHHh------hhhHH
Q 006898          416 AIIEYIPLLASQLG-------VGFFD-DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAM------QHITP  478 (626)
Q Consensus       416 ~~~~~l~~l~~~~~-------~~~~~-~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~---~~~~------~~il~  478 (626)
                      .++.++..++..-+       ...+. ...+|.+..++.+.+..||++|++++..++..-..   .++.      ..-++
T Consensus       578 eAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~  657 (778)
T 3opb_A          578 EALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFN  657 (778)
T ss_dssp             HHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHH
T ss_pred             HHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHH
Confidence            89999999987542       11233 35789999999999999999999999999863221   1110      11277


Q ss_pred             HHHhhhcCCChHHHHHHHHHHHHhccccCh--H-Hhh-hcHHHHHhhhCCC--CCchHHHHHHHHHHHHHhh
Q 006898          479 QVLEMINNPHYLYRMTILRAISLLAPVMGS--E-ITC-SRLLPVVINASKD--RVPNIKFNVAKVLQSLIPI  544 (626)
Q Consensus       479 ~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~--~-~~~-~~~l~~l~~~l~d--~~~~vR~~a~~~l~~i~~~  544 (626)
                      .+..++...+..+|.+|+.++.++....+.  . .+. ...++.+..++++  +++++|..++.++.++...
T Consensus       658 lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~  729 (778)
T 3opb_A          658 ILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV  729 (778)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence            888999999999999999999998532221  1 122 2467777778877  8999999999999999974

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=99.53  E-value=8.4e-11  Score=130.44  Aligned_cols=345  Identities=9%  Similarity=0.037  Sum_probs=216.7

Q ss_pred             hhHHHHHHHhhcC-CchhHHHHHHHHHHHhhcccCchh-hhhhhHHHHH-HhcCCCCHHHHHHHHHHHHHHHHH-h-CCC
Q 006898          201 TDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEPQD-CVAHILPVIV-NFSQDKSWRVRYMVANQLYELCEA-V-GPE  275 (626)
Q Consensus       201 ~~ll~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~~-~~~~i~~~l~-~~~~d~~~~vR~~a~~~l~~l~~~-~-~~~  275 (626)
                      +.+++.+...+.+ .++++...+++++....+..+-.. ..+.+++.+. .++.  ++..|..++++|..+... . +..
T Consensus       193 ~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~  270 (1023)
T 4hat_C          193 EQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDN  270 (1023)
T ss_dssp             HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSC
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCch
Confidence            3455555555543 456788889999999888766532 2345677766 6664  467899999999988752 1 111


Q ss_pred             -ccccc-------hHHHH-HHh-------------cCCChHHHHHHHHHhHHHHHHhhCh-----H---HHHHhhHHHHH
Q 006898          276 -PTRMD-------LVPAY-VRL-------------LRDNEAEVRIAAAGKVTKFCRILNP-----E---LAIQHILPCVK  325 (626)
Q Consensus       276 -~~~~~-------l~~~l-~~~-------------l~d~~~~vr~~a~~~l~~l~~~~~~-----~---~~~~~l~~~l~  325 (626)
                       ...+.       .++.+ ..+             -.+++.+........+..+++....     +   ......+..+.
T Consensus       271 ~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll  350 (1023)
T 4hat_C          271 DLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLI  350 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH
Confidence             11111       11111 100             1234556555555555555542211     1   11122233555


Q ss_pred             HhccCCCHHHHHHHHHHHHhhhhhhcH--------HHHHHhHHHHHHHhhcCC---------------------CHHHHH
Q 006898          326 ELSSDSSQHVRSALASVIMGMAPLLGK--------DATIEQLLPIFLSLLKDE---------------------FPDVRL  376 (626)
Q Consensus       326 ~l~~d~~~~vr~~~~~~l~~l~~~~~~--------~~~~~~l~~~l~~~l~d~---------------------~~~vr~  376 (626)
                      .....+++.+-..+++.+..+...+-.        ..+...+++.+..-+.-+                     +....-
T Consensus       351 ~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f  430 (1023)
T 4hat_C          351 QLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLY  430 (1023)
T ss_dssp             HHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHH
T ss_pred             HhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHH
Confidence            556667788867777777777653221        223345666665544311                     100111


Q ss_pred             -HHHHhhHHHHhhhchhhHHhhHHHHHHHHhcC--CChHHHHHHHHHHHHHHHhhChh---hHHHHHHHHHHHHhc----
Q 006898          377 -NIISKLDQVNQVIGIDLLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLQ----  446 (626)
Q Consensus       377 -~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~r~~~~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~----  446 (626)
                       ..-.+|..+....+.+ ..+.+++.+.+.+.+  .+|+.|.+++-+++.++++..++   .+...++|.++.++.    
T Consensus       431 ~~~Rd~L~~l~~l~~~~-~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~  509 (1023)
T 4hat_C          431 KSEREVLVYLTHLNVID-TEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRG  509 (1023)
T ss_dssp             HHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHhccCHHH-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhcccc
Confidence             1114455554444443 335566777665543  68999999999999999887654   344667888888775    


Q ss_pred             -CCchHHHHHHHHHHHHHHHHhChH-HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHH----------hhhc
Q 006898          447 -DKVYSIRDAAANNLKRLAEEFGPE-WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI----------TCSR  514 (626)
Q Consensus       447 -d~~~~VR~~a~~~l~~l~~~~~~~-~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~----------~~~~  514 (626)
                       |+...||..+++++|.+.+.+... .....+++.+.+.+.++++++..+|+.++..+++.+....          +.+.
T Consensus       510 ~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~  589 (1023)
T 4hat_C          510 KDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQT  589 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHH
T ss_pred             CcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHH
Confidence             466678889999999998876432 2346667777777888899999999999999999877543          4566


Q ss_pred             HHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc
Q 006898          515 LLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS  548 (626)
Q Consensus       515 ~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~  548 (626)
                      ++..+.....+-.+.-+..+.++++.++...++.
T Consensus       590 il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~  623 (1023)
T 4hat_C          590 IIRDIQKTTADLQPQQVHTFYKACGIIISEERSV  623 (1023)
T ss_dssp             HHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCH
Confidence            6667777777777888899999999999988753

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=99.53  E-value=6.9e-11  Score=131.06  Aligned_cols=523  Identities=12%  Similarity=0.088  Sum_probs=317.6

Q ss_pred             cHHHHHHHHhhHHHHHHhhChH----h---hhhhhcccccccc--CCchHHHHHHHHHHhccccccCCcchhhcchHHHh
Q 006898           22 DIQLRLNSIRRLSTIARALGEE----R---TRKELIPFLSENN--DDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLE   92 (626)
Q Consensus        22 d~~~r~~a~~~l~~i~~~~~~~----~---~~~~l~~~l~~~~--~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~   92 (626)
                      +..+|..|+..|....+.++++    .   .++.++.++....  +..+-+|..++.++..++.... +..|+.+++-+.
T Consensus        56 ~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~-p~~Wp~~i~~l~  134 (980)
T 3ibv_A           56 KPSTRLICLQTLSEKVREWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLY-PSNWNDFFASLQ  134 (980)
T ss_dssp             CHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHT-TTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhC-cccCchHHHHHH
Confidence            7899999999998776655544    2   4556667666532  3466899999999998877543 456777777666


Q ss_pred             hhhcCcch-HHHHHHHHHHHHHHhhcCh-----------------hhH--------HHhHHHHHHHHhcCCccchhHHHh
Q 006898           93 TLCTVEET-CVRDKAVESLCRIGSQMRE-----------------SDL--------VDWYIPLVKRLAAGEWFTARVSAC  146 (626)
Q Consensus        93 ~l~~~~~~-~vR~~a~~~l~~i~~~~~~-----------------~~~--------~~~l~~~l~~l~~~~~~~~r~~a~  146 (626)
                      .+.+.++. ..-....+.+..+.+.+..                 +.+        .+.+..++.......+...+..+.
T Consensus       135 ~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L  214 (980)
T 3ibv_A          135 GVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCL  214 (980)
T ss_dssp             HHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence            65543333 2333444455544343211                 000        111223333332334556777888


Q ss_pred             hHhHHhcCCCChHH--HHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHH------HHHHhhc-CCchh
Q 006898          147 GLFHIAYPSAPDIL--KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMS------IFEDLTQ-DDQDS  217 (626)
Q Consensus       147 ~~l~~~~~~~~~~~--~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~------~l~~l~~-d~~~~  217 (626)
                      +++.....-.+...  .+.+++.+..++.+  +.+|.+|+++|..+...-.+......++.      .+..+.. +++.+
T Consensus       215 ~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d  292 (980)
T 3ibv_A          215 QVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPN  292 (980)
T ss_dssp             HHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHH
T ss_pred             HHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHH
Confidence            88888887666542  26888888888876  79999999999998876443222112222      2222222 34555


Q ss_pred             HHHHHHHHHHHhhcc------cC----c------hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh---CC-Ccc
Q 006898          218 VRLLAVEGCAALGKL------LE----P------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV---GP-EPT  277 (626)
Q Consensus       218 vr~~a~~~l~~l~~~------~~----~------~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~---~~-~~~  277 (626)
                      +.+.-.+.+..+++.      .+    .      ......+++.+..++.+++..|-..+...+..+....   +. ...
T Consensus       293 ~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~  372 (980)
T 3ibv_A          293 FDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKEL  372 (980)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccc
Confidence            554433333333221      11    0      0334567888888888888888777776666655432   21 111


Q ss_pred             c-------cchHHHHHHhcC-------C-----Ch----HHHHHHHHHhHHHHHHhhChHHHHH----hhHHHHHHhc--
Q 006898          278 R-------MDLVPAYVRLLR-------D-----NE----AEVRIAAAGKVTKFCRILNPELAIQ----HILPCVKELS--  328 (626)
Q Consensus       278 ~-------~~l~~~l~~~l~-------d-----~~----~~vr~~a~~~l~~l~~~~~~~~~~~----~l~~~l~~l~--  328 (626)
                      .       ..+++.+..-+.       |     ++    .+.|.... .+-..+..++++.+.+    .+.+.+.+.+  
T Consensus       373 ~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~  451 (980)
T 3ibv_A          373 SASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATL  451 (980)
T ss_dssp             CHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             cHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcc
Confidence            1       123333333221       1     11    24676666 7777788888887767    6666666654  


Q ss_pred             -cCCCHHHHHHHHHHHHhhhhhhcHH--------HHHHhHHHHHHHhhc-----CCCHHHHHHHHHhhHHHHhhhchh-h
Q 006898          329 -SDSSQHVRSALASVIMGMAPLLGKD--------ATIEQLLPIFLSLLK-----DEFPDVRLNIISKLDQVNQVIGID-L  393 (626)
Q Consensus       329 -~d~~~~vr~~~~~~l~~l~~~~~~~--------~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~L~~~~~~~~~~-~  393 (626)
                       .+.+|+.+++++-+++.+++.+...        ...+.+++.+..+++     ++.+.||..++..++++.+.+... .
T Consensus       452 ~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~  531 (980)
T 3ibv_A          452 SPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESA  531 (980)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCT
T ss_pred             cCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCch
Confidence             2467999999999999998865421        123356777777765     888999999999999999887643 2


Q ss_pred             HHhhHHHHHHH--HhcCCChHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHhcCC---------------------
Q 006898          394 LSQSLLPAIVE--LAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDK---------------------  448 (626)
Q Consensus       394 ~~~~i~~~l~~--~~~~~~~~~r~~~~~~l~~l~~~~~~~~--~~~~l~p~l~~~l~d~---------------------  448 (626)
                      +...+++.+..  .+.+++.++|..+..++..+++.+....  +.+.++..+..++.-.                     
T Consensus       532 ~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~  611 (980)
T 3ibv_A          532 AIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNS  611 (980)
T ss_dssp             THHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTT
T ss_pred             hHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccC
Confidence            22344455544  4557888999999999999999876532  2233444444444310                     


Q ss_pred             chHHHHHHHHHHHHHHHHhCh--H---HHhhhhHHHHH----hhhcCC----ChHH-HHHHHHHHHHhccccCh------
Q 006898          449 VYSIRDAAANNLKRLAEEFGP--E---WAMQHITPQVL----EMINNP----HYLY-RMTILRAISLLAPVMGS------  508 (626)
Q Consensus       449 ~~~VR~~a~~~l~~l~~~~~~--~---~~~~~il~~l~----~~l~~~----~~~v-R~~a~~~l~~i~~~~~~------  508 (626)
                      ..+-+....+++|.++...+.  +   ...+.+++.+.    ..+...    +... -...+.+++.+++.++.      
T Consensus       612 ~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~  691 (980)
T 3ibv_A          612 DFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEV  691 (980)
T ss_dssp             THHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCC
T ss_pred             CchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCC
Confidence            122456688899999987652  1   12244444433    233221    2212 22556777888876532      


Q ss_pred             --HHhhhcHHHHHhhhCC--CCCchHHHHHHHHHHHHHhhhccc
Q 006898          509 --EITCSRLLPVVINASK--DRVPNIKFNVAKVLQSLIPIVDQS  548 (626)
Q Consensus       509 --~~~~~~~l~~l~~~l~--d~~~~vR~~a~~~l~~i~~~~~~~  548 (626)
                        ......+++.+...+.  ..+..||..++.++.+++..+|..
T Consensus       692 p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~  735 (980)
T 3ibv_A          692 AWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPD  735 (980)
T ss_dssp             SHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHh
Confidence              1233455566655554  466899999999999999998874

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.53  E-value=8.9e-12  Score=127.98  Aligned_cols=347  Identities=15%  Similarity=0.107  Sum_probs=222.2

Q ss_pred             chhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc---hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh--
Q 006898          198 HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV--  272 (626)
Q Consensus       198 ~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~--  272 (626)
                      .+.+.-+|.+..++.++++.++..|+.++..++.....   .......+|.+..++.+++..++..++.+|..++..-  
T Consensus        44 ~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~  123 (584)
T 3l6x_A           44 NWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQ  123 (584)
T ss_dssp             CCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCH
T ss_pred             CcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCH
Confidence            34444566666666666677777777777666643221   1223345677777777777777777777777766310  


Q ss_pred             --CCCccccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHHhhCh-HHHHHhhHHHHHHhc------------------cC
Q 006898          273 --GPEPTRMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILNP-ELAIQHILPCVKELS------------------SD  330 (626)
Q Consensus       273 --~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~l~------------------~d  330 (626)
                        .........+|.++.+++. .+.++++.+..+|..++..-.. ..+....+|.|.+++                  ..
T Consensus       124 ~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~  203 (584)
T 3l6x_A          124 DNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHI  203 (584)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CC
T ss_pred             HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhccccccccccccccccccc
Confidence              0011123467777777764 4567777777777666552111 122234456665543                  12


Q ss_pred             CCHHHHHHHHHHHHhhhhhhc--HHHHH--HhHHHHHHHhhc------CCCHHHHHHHHHhhHHHHhhh-----------
Q 006898          331 SSQHVRSALASVIMGMAPLLG--KDATI--EQLLPIFLSLLK------DEFPDVRLNIISKLDQVNQVI-----------  389 (626)
Q Consensus       331 ~~~~vr~~~~~~l~~l~~~~~--~~~~~--~~l~~~l~~~l~------d~~~~vr~~a~~~L~~~~~~~-----------  389 (626)
                      .+..|+..+..+|..++..-.  .....  .-+++.++..+.      +.+....+.|+.+|..++...           
T Consensus       204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~  283 (584)
T 3l6x_A          204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ  283 (584)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred             ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence            356888888888888875321  11111  123444444443      345567777777776655331           


Q ss_pred             ----------------chhhH-HhhHHHHHHHHhc-CCChHHHHHHHHHHHHHHHhhChh------hH-HHHHHHHHHHH
Q 006898          390 ----------------GIDLL-SQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVG------FF-DDKLGALCMQW  444 (626)
Q Consensus       390 ----------------~~~~~-~~~i~~~l~~~~~-~~~~~~r~~~~~~l~~l~~~~~~~------~~-~~~l~p~l~~~  444 (626)
                                      |.+.+ ...+++.+..+++ ..+..++..++.++..++..-++.      .+ ....+|.+..+
T Consensus       284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L  363 (584)
T 3l6x_A          284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL  363 (584)
T ss_dssp             ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred             hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence                            11111 1245677777775 567999999999999997532211      11 14569999999


Q ss_pred             hcCCchHHHHHHHHHHHHHHHHhChH-HHhhhhHHHHHhhhcCC--------ChHHHHHHHHHHHHhccccCh---HHhh
Q 006898          445 LQDKVYSIRDAAANNLKRLAEEFGPE-WAMQHITPQVLEMINNP--------HYLYRMTILRAISLLAPVMGS---EITC  512 (626)
Q Consensus       445 l~d~~~~VR~~a~~~l~~l~~~~~~~-~~~~~il~~l~~~l~~~--------~~~vR~~a~~~l~~i~~~~~~---~~~~  512 (626)
                      +..++..|+..|+.+|+.++..-... .+....+|.|.+++.++        +..++..++.++++++..-..   ....
T Consensus       364 L~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~  443 (584)
T 3l6x_A          364 LTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRE  443 (584)
T ss_dssp             GGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            99999999999999999998754322 34467899999988775        357889999999988743211   2234


Q ss_pred             hcHHHHHhhhCCCC--CchHHHHHHHHHHHHHhh
Q 006898          513 SRLLPVVINASKDR--VPNIKFNVAKVLQSLIPI  544 (626)
Q Consensus       513 ~~~l~~l~~~l~d~--~~~vR~~a~~~l~~i~~~  544 (626)
                      ...+|.|..++.+.  .+.++..|+.+|..+..+
T Consensus       444 ~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~  477 (584)
T 3l6x_A          444 TQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY  477 (584)
T ss_dssp             TTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred             CCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence            57899999999876  789999999999998754

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.52  E-value=9.2e-13  Score=123.79  Aligned_cols=230  Identities=11%  Similarity=0.029  Sum_probs=152.6

Q ss_pred             HHHHHhhcCCCHHHHHHHHHhhHHHHhhhch---hhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh---ChhhHH
Q 006898          361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL---GVGFFD  434 (626)
Q Consensus       361 ~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~---~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~---~~~~~~  434 (626)
                      |.+..++.++++.+|..|+.+|..+......   ......+++.+.+++++++..+|..++.++..++...   ......
T Consensus         5 ~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~   84 (252)
T 4hxt_A            5 EKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD   84 (252)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            3444444444455555555555444332210   0111234555555555555555555555555554321   011122


Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh---HHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccCh---
Q 006898          435 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---  508 (626)
Q Consensus       435 ~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~---  508 (626)
                      ...+|.+..++.+++..+|..|+.+|+.++.....   .......+|.+.+++.++++.+|..++.++++++...+.   
T Consensus        85 ~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~  164 (252)
T 4hxt_A           85 AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK  164 (252)
T ss_dssp             TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            34678888889999999999999999999842211   123356899999999999999999999999999874322   


Q ss_pred             HHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhcc---chhhhcccchHHhhhccCCCcccccccccCchhHHHHH
Q 006898          509 EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SVSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCL  585 (626)
Q Consensus       509 ~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~---~~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~  585 (626)
                      .......+|.|..++.++++.+|..++.+|+.+......   ......+++.|. .++.+++.++|.         .|..
T Consensus       165 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~-~ll~~~~~~v~~---------~a~~  234 (252)
T 4hxt_A          165 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQ-KLLTSTDSEVQK---------EAQR  234 (252)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHH-HGGGCSCHHHHH---------HHHH
T ss_pred             HHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH-HHHCCCcHHHHH---------HHHH
Confidence            223466899999999999999999999999999863221   122356788888 889999999999         9999


Q ss_pred             HHHHHHHHhhcCCcc
Q 006898          586 ALNYCHRWWRKQSVP  600 (626)
Q Consensus       586 al~~~~~~~~~~~~~  600 (626)
                      +|..+.........+
T Consensus       235 ~L~~l~~~~~~~~~~  249 (252)
T 4hxt_A          235 ALENIKSGGWLEHHH  249 (252)
T ss_dssp             HHHHHHHTCBCCC--
T ss_pred             HHHHHHcCCCccccc
Confidence            999887665544443

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.52  E-value=2.3e-12  Score=121.06  Aligned_cols=230  Identities=13%  Similarity=0.080  Sum_probs=140.2

Q ss_pred             HHHHHHhcCCChHHHHHHHHHhHHHHHHhhChH---HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHh
Q 006898          282 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQ  358 (626)
Q Consensus       282 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~  358 (626)
                      +|.+..++++.++++|..|+.++..++...+..   ......+|.+.++++++++.+|..++.++..++..-..  .   
T Consensus         4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~--~---   78 (252)
T 4hxt_A            4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE--A---   78 (252)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH--H---
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH--H---
Confidence            455566666655666666666666655432211   11223445555555555555555555555555432100  0   


Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC---hhhHHH
Q 006898          359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDD  435 (626)
Q Consensus       359 l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~---~~~~~~  435 (626)
                                                     .........+|.+.+++++++..+|..++.++..++....   ......
T Consensus        79 -------------------------------~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  127 (252)
T 4hxt_A           79 -------------------------------IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA  127 (252)
T ss_dssp             -------------------------------HHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             -------------------------------HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence                                           0001112344444555555555555555555554442110   111223


Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh---HHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccCh---H
Q 006898          436 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---E  509 (626)
Q Consensus       436 ~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~---~  509 (626)
                      ..+|.+..++.++++.+|..++.+|+.++.....   ......++|.+.+++.++++.+|..++.++++++.....   .
T Consensus       128 ~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~  207 (252)
T 4hxt_A          128 GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKA  207 (252)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHH
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            4677888888888899999999999988753211   123356889999999999999999999999999863221   1


Q ss_pred             HhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhcc
Q 006898          510 ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  547 (626)
Q Consensus       510 ~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~  547 (626)
                      ......++.+..+++++++.+|..|+++|+++....+.
T Consensus       208 l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  245 (252)
T 4hxt_A          208 IVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWL  245 (252)
T ss_dssp             HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred             HHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCc
Confidence            23456889999999999999999999999999876544

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.51  E-value=4.2e-12  Score=129.72  Aligned_cols=149  Identities=12%  Similarity=0.043  Sum_probs=110.2

Q ss_pred             hhHHHHHHHHhcC-CChHHHHHHHHHHHHHHHhhChh-------hH-HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Q 006898          396 QSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVG-------FF-DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE  466 (626)
Q Consensus       396 ~~i~~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~~~-------~~-~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~  466 (626)
                      ..+++.+..++.+ ++..++..++.++..++..-+..       .+ ....+|.+..++.+.+..||..|+++|..++..
T Consensus       282 ~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~  361 (457)
T 1xm9_A          282 SDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH  361 (457)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred             cchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC
Confidence            3467777777754 46889999999999887543321       11 134679999999999999999999999999763


Q ss_pred             hChH-HHhhhhHHHHHhhhcCCCh------HHHHHHHHHHHHhccccChH---HhhhcHHHHHhhhCCCC-CchHHHHHH
Q 006898          467 FGPE-WAMQHITPQVLEMINNPHY------LYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDR-VPNIKFNVA  535 (626)
Q Consensus       467 ~~~~-~~~~~il~~l~~~l~~~~~------~vR~~a~~~l~~i~~~~~~~---~~~~~~l~~l~~~l~d~-~~~vR~~a~  535 (626)
                      -... .+....+|.+.+++..++.      .+...++.+++++...-+..   ......++.|..++++. +..++..|+
T Consensus       362 ~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~  441 (457)
T 1xm9_A          362 PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAAR  441 (457)
T ss_dssp             GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHH
Confidence            2111 2345688999998877643      57778899999987543321   22356889999999888 899999999


Q ss_pred             HHHHHHHhh
Q 006898          536 KVLQSLIPI  544 (626)
Q Consensus       536 ~~l~~i~~~  544 (626)
                      ++|..+...
T Consensus       442 ~~L~~~~~~  450 (457)
T 1xm9_A          442 LLLSDMWSS  450 (457)
T ss_dssp             HHHHTTSSS
T ss_pred             HHHHHHHcc
Confidence            999987643

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.51  E-value=7.2e-11  Score=123.01  Aligned_cols=484  Identities=12%  Similarity=0.107  Sum_probs=303.4

Q ss_pred             HHHHHHH--hcCccHHHHHHHHhhHHHHHHhhChHhhhhhhcccccc-c----c--CCchHHHHHHHHHHhccccccC--
Q 006898           11 IAVLIDE--LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-N----N--DDDDEVLLAMAEELGVFIPYVG--   79 (626)
Q Consensus        11 i~~l~~~--l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~----~--~~~~~vr~~~~~~l~~~~~~~~--   79 (626)
                      +.+|+.+  ++...+++|..++-.+..+.... ++++.+.+..++.. +    .  +.++-+  .+...+..+.+.++  
T Consensus       170 ~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~-~~~~~~~~~~~~~~l~~e~~~~~~~~~~~--~~~~~l~~lfPi~p~~  246 (778)
T 3opb_A          170 VRFLVKELILRISEDEVKSMMLIIFAELQSSF-QKDFDKAVVDFMSSLIVEAEIDVGNDPLS--IIVKTLSELYPSLTTL  246 (778)
T ss_dssp             TTHHHHHHHTTTTCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTCSSCHHH--HHHHHHHHHTTTTHHH
T ss_pred             hhhHHHHhccccChhhhHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHhhccCCCCccHH--HHHHHHHHHhcCCHHH
Confidence            6677766  46888899999998888885554 35566666666553 1    1  223322  22233333222211  


Q ss_pred             -Ccc-hhhcchHHHhhhh-cCcchHHHHHHHHHHHHHHhhcC-hhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCC
Q 006898           80 -GVE-HAHVLLPPLETLC-TVEETCVRDKAVESLCRIGSQMR-ESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPS  155 (626)
Q Consensus        80 -~~~-~~~~l~~~l~~l~-~~~~~~vR~~a~~~l~~i~~~~~-~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~  155 (626)
                       ..- ..+.+.+.+.... +.++..+..++.+.+...+..-. ++.+..+..+++..++++  ..+|..|+..++.+...
T Consensus       247 ~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~  324 (778)
T 3opb_A          247 CSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSF  324 (778)
T ss_dssp             HHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGG
T ss_pred             HHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcC
Confidence             010 1123344444433 34556666777777766554221 234455677888888865  46788888887776543


Q ss_pred             C--ChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc-cch--hhhHHHHHHHhhcC-CchhHHHHHHHHHHHh
Q 006898          156 A--PDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-AHL--KTDIMSIFEDLTQD-DQDSVRLLAVEGCAAL  229 (626)
Q Consensus       156 ~--~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-~~~--~~~ll~~l~~l~~d-~~~~vr~~a~~~l~~l  229 (626)
                      .  ......++.+.+...+.+++...|+.+++.|+.+...-.. +.+  .+.++..+..++++ ++..+...++..+.++
T Consensus       325 ~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NL  404 (778)
T 3opb_A          325 TKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANL  404 (778)
T ss_dssp             GTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHT
T ss_pred             CCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Confidence            2  2335567889999988887777799999999998642111 111  13456777777775 5667888899999999


Q ss_pred             hcccCchh----hhhhhHHHHHHhc----CCCCHHHHHHHHHHHHH-HHHHhCCCccccchHHHHHHhcCCChHHHHHHH
Q 006898          230 GKLLEPQD----CVAHILPVIVNFS----QDKSWRVRYMVANQLYE-LCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA  300 (626)
Q Consensus       230 ~~~~~~~~----~~~~i~~~l~~~~----~d~~~~vR~~a~~~l~~-l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a  300 (626)
                      ....+...    -..++.++...-.    .+++..  ... ..+.. ....+    .....+|.+..+++.+++.+|..+
T Consensus       405 t~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~--~~~-~~v~~~~~~~l----~eaGvIp~Lv~Ll~S~s~~~re~A  477 (778)
T 3opb_A          405 STLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEK--AAK-EDILLFNEKYI----LRTELISFLKREMHNLSPNCKQQV  477 (778)
T ss_dssp             TCCCCCCCCCCC------------------CCTHH--HHH-HHHHHHHHHHT----TTTTHHHHHHHHGGGSCHHHHHHH
T ss_pred             cCCCcccchhhhhhhhhhhhccccCcccCcccccc--cch-HHHHHHHHHHH----HHCcCHHHHHHHHcCCCHHHHHHH
Confidence            88765421    1222222222110    011111  111 11111 11111    134689999999999999999999


Q ss_pred             HHhHHHHHHhhChH--HHHHhhHHHHHHhccCCCHH---HHHHHHHHHHhhhhhhcHHHHH-----HhHHHHHHHhhcC-
Q 006898          301 AGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQH---VRSALASVIMGMAPLLGKDATI-----EQLLPIFLSLLKD-  369 (626)
Q Consensus       301 ~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~---vr~~~~~~l~~l~~~~~~~~~~-----~~l~~~l~~~l~d-  369 (626)
                      ++++..++..-...  ...+..++.+.+++.+....   +|..++.++..+.-.-.+....     ...+|.+..+|.. 
T Consensus       478 ~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~  557 (778)
T 3opb_A          478 VRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRS  557 (778)
T ss_dssp             HHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCS
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCC
Confidence            99999998643211  34456678888877765543   8999999998887433222111     1567888888872 


Q ss_pred             CCH-------------HHHHHHHHhhHHHHhhhch------h-hHH-hhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh
Q 006898          370 EFP-------------DVRLNIISKLDQVNQVIGI------D-LLS-QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL  428 (626)
Q Consensus       370 ~~~-------------~vr~~a~~~L~~~~~~~~~------~-~~~-~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~  428 (626)
                      +..             --+..|+.+|.+++..-+.      . .+. ...+|.+.+++.+.+..+|.++++.+..++..-
T Consensus       558 ~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~  637 (778)
T 3opb_A          558 TPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHP  637 (778)
T ss_dssp             SSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSG
T ss_pred             CCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc
Confidence            221             1266888888888765421      1 233 258899999999999999999999999998643


Q ss_pred             C---hhhHH---H---HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh--H-HHh-hhhHHHHHhhhcC--CChHHHH
Q 006898          429 G---VGFFD---D---KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP--E-WAM-QHITPQVLEMINN--PHYLYRM  493 (626)
Q Consensus       429 ~---~~~~~---~---~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~--~-~~~-~~il~~l~~~l~~--~~~~vR~  493 (626)
                      .   ..++.   +   .=++.+..+++..+..+|.+|+.+++.+......  . ... ...++.+..++.+  ++..+|.
T Consensus       638 e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~  717 (778)
T 3opb_A          638 LTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQ  717 (778)
T ss_dssp             GGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHH
Confidence            2   12221   1   1377888999999999999999999998654322  1 112 3577888888888  8999999


Q ss_pred             HHHHHHHHhcccc
Q 006898          494 TILRAISLLAPVM  506 (626)
Q Consensus       494 ~a~~~l~~i~~~~  506 (626)
                      .++.++.++++..
T Consensus       718 R~~~~l~NL~~~~  730 (778)
T 3opb_A          718 RLLMLFFGLFEVI  730 (778)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998743

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=99.50  E-value=7.8e-11  Score=133.61  Aligned_cols=367  Identities=7%  Similarity=0.022  Sum_probs=231.0

Q ss_pred             CHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc---h---------------h
Q 006898          176 MPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP---Q---------------D  237 (626)
Q Consensus       176 ~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~---------------~  237 (626)
                      ++.||...+.+++.++....+ ..|+.+++.+...++ .++..+..++..|..+.+.+..   +               .
T Consensus       113 ~~~i~~kl~~~ia~Ia~~~~p-~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~  190 (1049)
T 3m1i_C          113 QKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSK  190 (1049)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence            478999999999999988655 457888888888886 4556677788888877754321   0               0


Q ss_pred             hhhhhHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCCC-ccccchHHHHHH-hcCCChHHHHHHHHHhHHHHHHhh-Ch
Q 006898          238 CVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPE-PTRMDLVPAYVR-LLRDNEAEVRIAAAGKVTKFCRIL-NP  313 (626)
Q Consensus       238 ~~~~i~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~-~~  313 (626)
                      ..+.+++.+...+. ..+..++..+.+++.......+.. .....+++.+.+ ++.  ++++|..|++++..+...- ++
T Consensus       191 ~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~--~~~~~~~a~~~L~~i~~~~~~~  268 (1049)
T 3m1i_C          191 EFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQ  268 (1049)
T ss_dssp             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHHCCCCT
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhCC--CHhHHHHHHHHHHHHHhCCCCc
Confidence            12234444444443 346778999999888765543322 122456776663 332  6799999999998887641 22


Q ss_pred             H------HH---HHhhHHHHHH--------------hccCCCHHHHHHHHHHHHhhhhhhc--------HHHHHHhHHHH
Q 006898          314 E------LA---IQHILPCVKE--------------LSSDSSQHVRSALASVIMGMAPLLG--------KDATIEQLLPI  362 (626)
Q Consensus       314 ~------~~---~~~l~~~l~~--------------l~~d~~~~vr~~~~~~l~~l~~~~~--------~~~~~~~l~~~  362 (626)
                      .      .+   ...++..+..              ..++.++.+...+++.+..++....        .......+++.
T Consensus       269 ~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  348 (1049)
T 3m1i_C          269 DNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQY  348 (1049)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Confidence            1      11   0112222211              1134455666667766665543221        12233456777


Q ss_pred             HHHhhcCCCHHHHHHHHHhhHHHHhhh-----chhh---HHhhHHHHHHHHhc---CC-------------------ChH
Q 006898          363 FLSLLKDEFPDVRLNIISKLDQVNQVI-----GIDL---LSQSLLPAIVELAE---DR-------------------HWR  412 (626)
Q Consensus       363 l~~~l~d~~~~vr~~a~~~L~~~~~~~-----~~~~---~~~~i~~~l~~~~~---~~-------------------~~~  412 (626)
                      ++.+...++.+++..++..+..+.+.+     ....   +...+++.+...+.   |.                   .|.
T Consensus       349 ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~  428 (1049)
T 3m1i_C          349 LIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQ  428 (1049)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHH
T ss_pred             HHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHH
Confidence            777777778899999998888776632     1111   11333444443321   11                   134


Q ss_pred             HHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHHhChH---HHhhhhHHHHHhhhc--
Q 006898          413 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ--DKVYSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLEMIN--  485 (626)
Q Consensus       413 ~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~--d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~l~--  485 (626)
                      .|.++...+..++. .+.....+.+.+.+...+.  ..++..|++++.+++.+....+..   .+...+++.+..+..  
T Consensus       429 ~~~~~~~~L~~l~~-~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~  507 (1049)
T 3m1i_C          429 LYKSEREVLVYLTH-LNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKK  507 (1049)
T ss_dssp             HHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhh
Confidence            56677777777764 3444455666777766665  367889999999999987655543   123455555554332  


Q ss_pred             ---CCChHHHHHHHHHHHHhccccCh-HHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhcc
Q 006898          486 ---NPHYLYRMTILRAISLLAPVMGS-EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  547 (626)
Q Consensus       486 ---~~~~~vR~~a~~~l~~i~~~~~~-~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~  547 (626)
                         ++.+.+|..++.+++...+.+.. ..+...+++.+...+.|+++.||..|+.++.++....+.
T Consensus       508 ~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~  573 (1049)
T 3m1i_C          508 RGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY  573 (1049)
T ss_dssp             CSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTH
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence               34556666788999987754322 246677888888899999999999999999999987654

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=99.49  E-value=2e-09  Score=114.68  Aligned_cols=272  Identities=10%  Similarity=-0.023  Sum_probs=181.7

Q ss_pred             chHHHHHHhcC---CChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCC--------CHHHHHHHHHHHHhhhh
Q 006898          280 DLVPAYVRLLR---DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDS--------SQHVRSALASVIMGMAP  348 (626)
Q Consensus       280 ~l~~~l~~~l~---d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~--------~~~vr~~~~~~l~~l~~  348 (626)
                      ..+..+...+.   ..++.+|.+|+.+++.+....+.+ .    +..|...+.+.        ++.+|..++-.|+.+.-
T Consensus       392 ~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~-~----~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~  466 (963)
T 4ady_A          392 EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD-T----TDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAM  466 (963)
T ss_dssp             THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH-H----HHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHH-H----HHHHHHHHcCccccccccccHHHHHHHHHHHHHHhc
Confidence            34555555554   456899999999999987766543 2    33333333332        26788888888887654


Q ss_pred             hhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh
Q 006898          349 LLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL  428 (626)
Q Consensus       349 ~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~  428 (626)
                      .-+.+    .+.+.+...+.|++..+|..|+.+|+.+.-..|.+...+.++..+.   .+.+..+|..+...++.+.  +
T Consensus       467 GS~~e----ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~---e~~~e~vrR~aalgLGll~--~  537 (963)
T 4ady_A          467 GSANI----EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQ---ETQHGNITRGLAVGLALIN--Y  537 (963)
T ss_dssp             TCCCH----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHT--T
T ss_pred             CCCCH----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHh---ccCcHHHHHHHHHHHHhhh--C
Confidence            33433    3455566677777778888899999987655555443344444333   4556778888888887764  3


Q ss_pred             ChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHh-hhcCCChHHHHHHHHHHHHhccccC
Q 006898          429 GVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE-MINNPHYLYRMTILRAISLLAPVMG  507 (626)
Q Consensus       429 ~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~-~l~~~~~~vR~~a~~~l~~i~~~~~  507 (626)
                      |.....+.++   ..+..+.++.+|..++.+++--+...|...    .+..|+. +.+|++..+|..|+.+++.+.-.  
T Consensus       538 g~~e~~~~li---~~L~~~~dp~vRygaa~alglAyaGTGn~~----aIq~LL~~~~~d~~d~VRraAViaLGlI~~g--  608 (963)
T 4ady_A          538 GRQELADDLI---TKMLASDESLLRYGGAFTIALAYAGTGNNS----AVKRLLHVAVSDSNDDVRRAAVIALGFVLLR--  608 (963)
T ss_dssp             TCGGGGHHHH---HHHHHCSCHHHHHHHHHHHHHHTTTSCCHH----HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSS--
T ss_pred             CChHHHHHHH---HHHHhCCCHHHHHHHHHHHHHHhcCCCCHH----HHHHHHHHhccCCcHHHHHHHHHHHHhhccC--
Confidence            4433222222   233457889999999988877666556543    3333333 45688889999999999987532  


Q ss_pred             hHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccchhhhcccchHHhhhccCCCcccccccccCchhHHHHHHH
Q 006898          508 SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLAL  587 (626)
Q Consensus       508 ~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al  587 (626)
                      ..   +.+...+..+.++.++.||..++.+||.+....+    ...++..|. ++..|+|..||.         .|..||
T Consensus       609 ~~---e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~----~~~aid~L~-~L~~D~d~~Vrq---------~Ai~AL  671 (963)
T 4ady_A          609 DY---TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKG----LQSAIDVLD-PLTKDPVDFVRQ---------AAMIAL  671 (963)
T ss_dssp             SC---SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC----CHHHHHHHH-HHHTCSSHHHHH---------HHHHHH
T ss_pred             CH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCC----cHHHHHHHH-HHccCCCHHHHH---------HHHHHH
Confidence            11   2233333345678899999999999999864322    256778888 999999999999         899888


Q ss_pred             HHHH
Q 006898          588 NYCH  591 (626)
Q Consensus       588 ~~~~  591 (626)
                      +.+.
T Consensus       672 G~Ig  675 (963)
T 4ady_A          672 SMIL  675 (963)
T ss_dssp             HHHS
T ss_pred             HHHh
Confidence            8774

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=99.48  E-value=1.1e-12  Score=121.55  Aligned_cols=193  Identities=14%  Similarity=0.175  Sum_probs=151.7

Q ss_pred             HHHhcCCccchhHHHhhHhHH-hcCCCC-----hHHHHHHHHHHHHhc-CCCCHHHHHHHHHhHHHHHHhhC-c--c-ch
Q 006898          131 KRLAAGEWFTARVSACGLFHI-AYPSAP-----DILKTELRSIYTQLC-QDDMPMVRRSAASNLGKFAATVE-P--A-HL  199 (626)
Q Consensus       131 ~~l~~~~~~~~r~~a~~~l~~-~~~~~~-----~~~~~~l~~~l~~l~-~d~~~~vR~~a~~~l~~l~~~~~-~--~-~~  199 (626)
                      .+.+.+.+|..|..+...+.. +....+     .....+++..+...+ +|.+..||..++.+++.++..++ +  . .+
T Consensus        22 ~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y  101 (249)
T 2qk1_A           22 QERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDY  101 (249)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHH
T ss_pred             HHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHH
Confidence            334456667777777766666 553322     122256777888888 79999999999999999999887 4  2 45


Q ss_pred             hhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCch-h--hhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC-
Q 006898          200 KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ-D--CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE-  275 (626)
Q Consensus       200 ~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~-~--~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~-  275 (626)
                      ...++|.+...++|..+.||..+..++..+++..++. .  +.+.+++.+...+++++|.+|..++..++.+....+.. 
T Consensus       102 ~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~  181 (249)
T 2qk1_A          102 VSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGY  181 (249)
T ss_dssp             HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCS
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcc
Confidence            5678999999999999999999999999999887542 1  25578888888899999999999999999999887642 


Q ss_pred             ----ccc-cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHh
Q 006898          276 ----PTR-MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKEL  327 (626)
Q Consensus       276 ----~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l  327 (626)
                          ... ..++|.+.+++.|++++||.+|..+++.++..+|...    +.|++..+
T Consensus       182 ~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~----~~p~l~~L  234 (249)
T 2qk1_A          182 STLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNT----FVKTLEHL  234 (249)
T ss_dssp             HHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGG----GHHHHHHS
T ss_pred             hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHH----HHHHHHHH
Confidence                134 7899999999999999999999999999999998754    35556554

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.48  E-value=3.1e-12  Score=120.08  Aligned_cols=224  Identities=14%  Similarity=0.103  Sum_probs=152.2

Q ss_pred             chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCh---HHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhc--HH-
Q 006898          280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG--KD-  353 (626)
Q Consensus       280 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~--~~-  353 (626)
                      .-.+.+...++++++++|..|+.++..+...-..   .......+|.+.++++++++.+|..++.+++.++....  .. 
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   91 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA   91 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            4567778888888888888888888665543111   12234577888888888889999999999998875321  11 


Q ss_pred             HHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchh---hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh
Q 006898          354 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV  430 (626)
Q Consensus       354 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~  430 (626)
                      ......+|.+..+++++++.+|..++.+|+.+.......   ......+|.+.+++.++++.+|..++.++..++.....
T Consensus        92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  171 (252)
T 4db8_A           92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE  171 (252)
T ss_dssp             HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence            122347888999999999999999999999886543222   22345778888888888888888888888887643211


Q ss_pred             ---hhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh---HHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhc
Q 006898          431 ---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLA  503 (626)
Q Consensus       431 ---~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~  503 (626)
                         .......+|.+..++.+++..+|..|+.+|+.++.....   ......++|.+.+++.++++.+|..++.++++++
T Consensus       172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~  250 (252)
T 4db8_A          172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ  250 (252)
T ss_dssp             HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred             HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence               112234577777888888888888888888877632111   1122345666666666666666666666666554

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.47  E-value=2.5e-11  Score=124.62  Aligned_cols=359  Identities=14%  Similarity=0.143  Sum_probs=242.4

Q ss_pred             HHHHHHHhhcccC-chhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCCChHHHH
Q 006898          222 AVEGCAALGKLLE-PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNEAEVR  297 (626)
Q Consensus       222 a~~~l~~l~~~~~-~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr  297 (626)
                      ++..|..+.+..+ +..+...-+|.+..++.+.+..++..++.+|..++..-.   ........+|.++.+++..+++++
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq  107 (584)
T 3l6x_A           28 SLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVH  107 (584)
T ss_dssp             ------------CCCCCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHH
T ss_pred             hHHHHHHHHhcCCCCCCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHH
Confidence            3444444444322 334556678888888899999999999999988874210   011233578999999999999999


Q ss_pred             HHHHHhHHHHHHhhChH----HHHHhhHHHHHHhccC-CCHHHHHHHHHHHHhhhhhhc-HHHHHHhHHHHHHHhh----
Q 006898          298 IAAAGKVTKFCRILNPE----LAIQHILPCVKELSSD-SSQHVRSALASVIMGMAPLLG-KDATIEQLLPIFLSLL----  367 (626)
Q Consensus       298 ~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~l~~d-~~~~vr~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~~l----  367 (626)
                      ..|+.+|..++..-+.+    ......+|.|.+++.+ .+..++..++.++..++..-. +.......+|.+..++    
T Consensus       108 ~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~  187 (584)
T 3l6x_A          108 LGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPH  187 (584)
T ss_dssp             HHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhccc
Confidence            99999999998631111    2234567888888875 678899999989998876322 2222334567776655    


Q ss_pred             --------------cCCCHHHHHHHHHhhHHHHhhhch--hhHH--hhHHHHHHHHhc------CCChHHHHHHHHHHHH
Q 006898          368 --------------KDEFPDVRLNIISKLDQVNQVIGI--DLLS--QSLLPAIVELAE------DRHWRVRLAIIEYIPL  423 (626)
Q Consensus       368 --------------~d~~~~vr~~a~~~L~~~~~~~~~--~~~~--~~i~~~l~~~~~------~~~~~~r~~~~~~l~~  423 (626)
                                    ...++.|+..|..+|..+...-..  ..+.  ..+++.|..+++      +.+......++.++..
T Consensus       188 sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~N  267 (584)
T 3l6x_A          188 SGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRN  267 (584)
T ss_dssp             HCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHH
Confidence                          123579999999999998753211  1111  245566666654      3566777777777777


Q ss_pred             HHHhhChh----------------------------hHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHhCh-----
Q 006898          424 LASQLGVG----------------------------FFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGP-----  469 (626)
Q Consensus       424 l~~~~~~~----------------------------~~~~~l~p~l~~~l~-d~~~~VR~~a~~~l~~l~~~~~~-----  469 (626)
                      ++.....+                            .+....++.++.++. ..+..+++.|+.+|..++..-+.     
T Consensus       268 Ls~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~  347 (584)
T 3l6x_A          268 LSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYI  347 (584)
T ss_dssp             HHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHH
T ss_pred             hhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHH
Confidence            66442100                            012345677788884 45789999999999999742111     


Q ss_pred             --HHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccCh-HHhhhcHHHHHhhhCCCC--------CchHHHHHHHHH
Q 006898          470 --EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS-EITCSRLLPVVINASKDR--------VPNIKFNVAKVL  538 (626)
Q Consensus       470 --~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~-~~~~~~~l~~l~~~l~d~--------~~~vR~~a~~~l  538 (626)
                        .......+|.|.+++.+++..++..++.++++++..... ..+....+|.|..++.+.        ..+++..|+.+|
T Consensus       348 ~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL  427 (584)
T 3l6x_A          348 RSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTI  427 (584)
T ss_dssp             HHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHH
T ss_pred             HHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHH
Confidence              112256799999999999999999999999999875543 345567899999999876        357889999999


Q ss_pred             HHHHhhhcc---chhhhcccchHHhhhccCC--CcccccccccCchhHHHHHHHHHH
Q 006898          539 QSLIPIVDQ---SVSTFSVSPFSFMLYLNVN--NFNVGFIFAAFPLVLFSCLALNYC  590 (626)
Q Consensus       539 ~~i~~~~~~---~~~~~~i~~~l~~~l~~d~--d~~vr~~~~~~~~~~~a~~al~~~  590 (626)
                      +++...-..   .......+|.|. .++.+.  ...++.         +|+.+|..+
T Consensus       428 ~NL~a~~~~~~~~I~~~g~I~~Lv-~LL~s~~~~~~v~k---------~Aa~vL~nl  474 (584)
T 3l6x_A          428 NEVIAENLEAAKKLRETQGIEKLV-LINKSGNRSEKEVR---------AAALVLQTI  474 (584)
T ss_dssp             HHHHTTCHHHHHHHHHTTHHHHHH-HHHTCSSSCHHHHH---------HHHHHHHHH
T ss_pred             HHHhcCCHHHHHHHHHCCChHHHH-HHHhCCCCChHHHH---------HHHHHHHHH
Confidence            988744221   133456788888 777664  667777         888888876

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.47  E-value=2.6e-12  Score=120.61  Aligned_cols=224  Identities=14%  Similarity=0.096  Sum_probs=174.4

Q ss_pred             hHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcH---HHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhch---hh
Q 006898          320 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DL  393 (626)
Q Consensus       320 l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~---~~  393 (626)
                      -++.+..++.+.++.+|..++..+..+...-..   .......+|.+..+++++++.+|..++.+|+.+......   ..
T Consensus        13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i   92 (252)
T 4db8_A           13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV   92 (252)
T ss_dssp             SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            356777777888999999999999665543111   122345789999999999999999999999999753211   12


Q ss_pred             HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh---hhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChH
Q 006898          394 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE  470 (626)
Q Consensus       394 ~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~  470 (626)
                      .....+|.+.++++++++.+|..++.++..++.....   .......+|.+..++.+++..+|..|+.+|+.++......
T Consensus        93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~  172 (252)
T 4db8_A           93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ  172 (252)
T ss_dssp             HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHH
Confidence            2345889999999999999999999999999764322   1233458899999999999999999999999998532111


Q ss_pred             ---HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccCh---HHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHh
Q 006898          471 ---WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP  543 (626)
Q Consensus       471 ---~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~---~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~  543 (626)
                         .....++|.+.+++.++++.+|..++.++++++.....   .......+|.+..++.+.++.+|..|+++|.++..
T Consensus       173 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          173 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred             HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence               12367899999999999999999999999999853221   12345689999999999999999999999998753

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.47  E-value=1.4e-11  Score=125.79  Aligned_cols=336  Identities=10%  Similarity=0.055  Sum_probs=199.8

Q ss_pred             HHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc---cchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc---hhhh
Q 006898          166 SIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP---QDCV  239 (626)
Q Consensus       166 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~  239 (626)
                      +.+..+++++++.+|..++.+|..++..-.+   .......+|.+.+++.++++.++..|+.+|.+++...++   ....
T Consensus         5 ~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~   84 (457)
T 1xm9_A            5 PKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRR   84 (457)
T ss_dssp             HHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            3344445555566666666666665532211   111223556666666666666666666666666653111   1113


Q ss_pred             hhhHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCCC--ccccchHHHHHHhc--------CC--------ChHHHHHHH
Q 006898          240 AHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPE--PTRMDLVPAYVRLL--------RD--------NEAEVRIAA  300 (626)
Q Consensus       240 ~~i~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l--------~d--------~~~~vr~~a  300 (626)
                      ...+|.+.+++. +++..++..++.+|..++..-...  ... ..+|.+..++        .+        .++++...|
T Consensus        85 ~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a  163 (457)
T 1xm9_A           85 QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNA  163 (457)
T ss_dssp             TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHH
T ss_pred             cCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHH
Confidence            345666666665 556666666666666666431000  112 4566666666        21        134455577


Q ss_pred             HHhHHHHHHhhChH---HHHH--hhHHHHHHhccC------CCHHHHHHHHHHHHhhhhh--------------------
Q 006898          301 AGKVTKFCRILNPE---LAIQ--HILPCVKELSSD------SSQHVRSALASVIMGMAPL--------------------  349 (626)
Q Consensus       301 ~~~l~~l~~~~~~~---~~~~--~l~~~l~~l~~d------~~~~vr~~~~~~l~~l~~~--------------------  349 (626)
                      +.+|..++..  ++   .+.+  ..+|.|..++.+      .+..++..++..+..++..                    
T Consensus       164 ~~aL~nLs~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~  241 (457)
T 1xm9_A          164 TGCLRNLSSA--DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY  241 (457)
T ss_dssp             HHHHHHHTTS--HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred             HHHHHHHccC--HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccc
Confidence            7777766653  21   1111  345555554432      2333444444334433210                    


Q ss_pred             --------h------------------------cH-HHHHHhHHHHHHHhhcC-CCHHHHHHHHHhhHHHHhhhch----
Q 006898          350 --------L------------------------GK-DATIEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGI----  391 (626)
Q Consensus       350 --------~------------------------~~-~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~L~~~~~~~~~----  391 (626)
                              +                        |. .......++.+..++.+ .++.+++.|+.+|..++..-+.    
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~  321 (457)
T 1xm9_A          242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG  321 (457)
T ss_dssp             ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred             ccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHH
Confidence                    0                        00 01123456777777764 4689999999999999753222    


Q ss_pred             ---hhH-HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh-hhHHHHHHHHHHHHhcCCc------hHHHHHHHHHH
Q 006898          392 ---DLL-SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV-GFFDDKLGALCMQWLQDKV------YSIRDAAANNL  460 (626)
Q Consensus       392 ---~~~-~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~-~~~~~~l~p~l~~~l~d~~------~~VR~~a~~~l  460 (626)
                         ..+ ....+|.+.+++.+++.+++..++.++..++..-.. ..+....+|.+..++...+      .++...++.++
T Consensus       322 ~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l  401 (457)
T 1xm9_A          322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTV  401 (457)
T ss_dssp             HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHH
Confidence               111 146789999999999999999999999999864322 2334567888999987764      36778888888


Q ss_pred             HHHHHHhChH---HHhhhhHHHHHhhhcCC-ChHHHHHHHHHHHHhcc
Q 006898          461 KRLAEEFGPE---WAMQHITPQVLEMINNP-HYLYRMTILRAISLLAP  504 (626)
Q Consensus       461 ~~l~~~~~~~---~~~~~il~~l~~~l~~~-~~~vR~~a~~~l~~i~~  504 (626)
                      +.+...-...   ......++.+.+++.++ +..++..|+..+.++..
T Consensus       402 ~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~  449 (457)
T 1xm9_A          402 RNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWS  449 (457)
T ss_dssp             HHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred             HHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHc
Confidence            8887543221   12256789999999998 99999999999998765

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=99.46  E-value=2.3e-10  Score=121.76  Aligned_cols=331  Identities=11%  Similarity=0.037  Sum_probs=221.3

Q ss_pred             HHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCC
Q 006898          178 MVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ---DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKS  254 (626)
Q Consensus       178 ~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~---d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~  254 (626)
                      ..+-.++.+||-+-....     ...+..+.+.+.   .+++.+|..|+.+++-+....+.+     ++..+...+.+.+
T Consensus       373 ~~k~sA~aSLGlIh~g~~-----~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~-----~~~lL~~~L~~~~  442 (963)
T 4ady_A          373 WAKFTATASLGVIHKGNL-----LEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD-----TTDYLKNIIVENS  442 (963)
T ss_dssp             HHHHHHHHHHHHHTSSCT-----TTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH-----HHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhhhhccCch-----HHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHH-----HHHHHHHHHcCcc
Confidence            456666677776644222     234555555565   567899999999999887766642     3444444443333


Q ss_pred             --------HHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHH
Q 006898          255 --------WRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKE  326 (626)
Q Consensus       255 --------~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~  326 (626)
                              ..+|..++..||.+....+    .+++.+.+...+.|.+..+|..|+.+|+.+.--.+.....+.++..+. 
T Consensus       443 ~~~~~~~~~~ir~gAaLGLGla~~GS~----~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~-  517 (963)
T 4ady_A          443 GTSGDEDVDVLLHGASLGIGLAAMGSA----NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQ-  517 (963)
T ss_dssp             SCCSCHHHHHHHHHHHHHHHHHSTTCC----CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH-
T ss_pred             ccccccccHHHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHh-
Confidence                    6799999988887654333    246777788888777778888899999887554455555455555443 


Q ss_pred             hccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHh
Q 006898          327 LSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA  406 (626)
Q Consensus       327 l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~  406 (626)
                        ++.+..+|+.++..|+.+.  +|.+...+.++.   .+..+.++.+|..++-+++.-.-..|.....+.   .|..+.
T Consensus       518 --e~~~e~vrR~aalgLGll~--~g~~e~~~~li~---~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~---LL~~~~  587 (963)
T 4ady_A          518 --ETQHGNITRGLAVGLALIN--YGRQELADDLIT---KMLASDESLLRYGGAFTIALAYAGTGNNSAVKR---LLHVAV  587 (963)
T ss_dssp             --HCSCHHHHHHHHHHHHHHT--TTCGGGGHHHHH---HHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHH---HHHHHH
T ss_pred             --ccCcHHHHHHHHHHHHhhh--CCChHHHHHHHH---HHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHH---HHHHhc
Confidence              5667899999988888764  343333333322   223478899999999998876666665432222   233334


Q ss_pred             cCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcC
Q 006898          407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN  486 (626)
Q Consensus       407 ~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~  486 (626)
                      +|.+..+|..++.+++.+.-.  ...   .+...+..+.++.++.||..++.++|.++..-+    ...+++.|..+.+|
T Consensus       588 ~d~~d~VRraAViaLGlI~~g--~~e---~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~----~~~aid~L~~L~~D  658 (963)
T 4ady_A          588 SDSNDDVRRAAVIALGFVLLR--DYT---TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKG----LQSAIDVLDPLTKD  658 (963)
T ss_dssp             HCSCHHHHHHHHHHHHHHTSS--SCS---SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC----CHHHHHHHHHHHTC
T ss_pred             cCCcHHHHHHHHHHHHhhccC--CHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCC----cHHHHHHHHHHccC
Confidence            677888999999999877532  221   122233345678899999999999999874433    24578888889999


Q ss_pred             CChHHHHHHHHHHHHhccccChH--HhhhcHHHHHhhhCCC--CCchHHHHHHHHHHHHH
Q 006898          487 PHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKD--RVPNIKFNVAKVLQSLI  542 (626)
Q Consensus       487 ~~~~vR~~a~~~l~~i~~~~~~~--~~~~~~l~~l~~~l~d--~~~~vR~~a~~~l~~i~  542 (626)
                      ++..||++|+.+++.+...-...  .....++..|.+...|  .++..|..+.-+.|-+-
T Consensus       659 ~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~  718 (963)
T 4ady_A          659 PVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMN  718 (963)
T ss_dssp             SSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence            99999999999999997533221  1234455555565544  56778888888888764

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=99.44  E-value=5.1e-10  Score=124.10  Aligned_cols=392  Identities=9%  Similarity=0.057  Sum_probs=233.8

Q ss_pred             CCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCch-hHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCC
Q 006898          175 DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQD-SVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDK  253 (626)
Q Consensus       175 ~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~-~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~  253 (626)
                      ..+.+|...+.++..++....++ .|+.+++.+..+++.++. ......++.|..+.+.+.....           ..+.
T Consensus       102 ~~~~IrnKL~~~la~l~~~~~p~-~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~-----------~~~~  169 (980)
T 3ibv_A          102 EPAYISNAVQHLLTLLFLQLYPS-NWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLV-----------LKTD  169 (980)
T ss_dssp             SCTHHHHHHHHHHHHHHHHHTTT-TCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCS-----------CCCH
T ss_pred             CcHHHHHHHHHHHHHHHHHhCcc-cCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhccc-----------ccCH
Confidence            45779999999999999886553 456677777777665433 2333445555544433321100           0000


Q ss_pred             CHHHHHHHH-HH-----HHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHH-HHhhHHHHHH
Q 006898          254 SWRVRYMVA-NQ-----LYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA-IQHILPCVKE  326 (626)
Q Consensus       254 ~~~vR~~a~-~~-----l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~l~~~l~~  326 (626)
                      ....|..-. ..     +..+.         +..+..+.......+++++..+++++..+...++...+ ...+++.+.+
T Consensus       170 ~~~~r~~~lkd~m~~~~~~~i~---------~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~  240 (980)
T 3ibv_A          170 VQIQKDNLVKDAIRANDMSDIV---------SFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYS  240 (980)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHhccHHHHH---------HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHH
Confidence            001121110 01     11111         11222222222235678888999999998887776633 2567777777


Q ss_pred             hccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHH------HHHhhc-CCCHHHHHHHHHhhHHHHhhh-----ch---
Q 006898          327 LSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI------FLSLLK-DEFPDVRLNIISKLDQVNQVI-----GI---  391 (626)
Q Consensus       327 l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~------l~~~l~-d~~~~vr~~a~~~L~~~~~~~-----~~---  391 (626)
                      ++.+  +.+|.++++++..+...-........++..      +..+.. +.+.++.+..++.+..++..+     .+   
T Consensus       241 ~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~  318 (980)
T 3ibv_A          241 FLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSEL  318 (980)
T ss_dssp             HTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--
T ss_pred             HcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCcccc
Confidence            7765  789999999999887643221111112111      111111 466677655554443332211     11   


Q ss_pred             --h------hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC---h-----h---hHHHHHHHHHHHHhc------
Q 006898          392 --D------LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---V-----G---FFDDKLGALCMQWLQ------  446 (626)
Q Consensus       392 --~------~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~---~-----~---~~~~~l~p~l~~~l~------  446 (626)
                        +      .....+++.+..+..++++.+-..++.++..+.....   .     .   .+...+++.+...+.      
T Consensus       319 ~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~  398 (980)
T 3ibv_A          319 SPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQE  398 (980)
T ss_dssp             CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCC
T ss_pred             chhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccc
Confidence              0      1224678888888888888888888888877665421   1     1   122344454444331      


Q ss_pred             -CC----c-----hHHHHHHHHHHHHHHHHhChHHHhh----hhHHHHHhhhc---CCChHHHHHHHHHHHHhccccChH
Q 006898          447 -DK----V-----YSIRDAAANNLKRLAEEFGPEWAMQ----HITPQVLEMIN---NPHYLYRMTILRAISLLAPVMGSE  509 (626)
Q Consensus       447 -d~----~-----~~VR~~a~~~l~~l~~~~~~~~~~~----~il~~l~~~l~---~~~~~vR~~a~~~l~~i~~~~~~~  509 (626)
                       |.    +     .+.|.... .+...+..++++....    .+.+.+.+.+.   +.+|+.+.+++.+++.+++.+...
T Consensus       399 ~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~  477 (980)
T 3ibv_A          399 WDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGP  477 (980)
T ss_dssp             CCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSG
T ss_pred             cccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhcccc
Confidence             11    1     24676666 7777777888776555    55555555552   457999999999999999976531


Q ss_pred             --------HhhhcHHHHHhhhCC-----CCCchHHHHHHHHHHHHHhhhccc-hhhhcccchHHhh--hccCCCcccccc
Q 006898          510 --------ITCSRLLPVVINASK-----DRVPNIKFNVAKVLQSLIPIVDQS-VSTFSVSPFSFML--YLNVNNFNVGFI  573 (626)
Q Consensus       510 --------~~~~~~l~~l~~~l~-----d~~~~vR~~a~~~l~~i~~~~~~~-~~~~~i~~~l~~~--l~~d~d~~vr~~  573 (626)
                              ...+.+++.+..+++     ++.+.||..+++++++....+... .+.+.+++.+. .  ...+++..|+. 
T Consensus       478 ~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll-~~~gl~~~~~~V~~-  555 (980)
T 3ibv_A          478 DAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFV-GPRGIHNTNERVRP-  555 (980)
T ss_dssp             GGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHT-STTTTTCCCTTTHH-
T ss_pred             ccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHh-ccccccCCChhHHH-
Confidence                    134457777777654     888999999999999999888642 33344444444 4  45588899999 


Q ss_pred             cccCchhHHHHHHHHHHHHHhhcCCcc
Q 006898          574 FAAFPLVLFSCLALNYCHRWWRKQSVP  600 (626)
Q Consensus       574 ~~~~~~~~~a~~al~~~~~~~~~~~~~  600 (626)
                              .|+.++..+.+-.++.-.|
T Consensus       556 --------~a~~af~~f~~~~~~~L~~  574 (980)
T 3ibv_A          556 --------RAWYLFYRFVKSIKKQVVN  574 (980)
T ss_dssp             --------HHHHHHHHHHHHTTTTCSS
T ss_pred             --------HHHHHHHHHHHHhhHHhhh
Confidence                    9999999987766554333

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.43  E-value=1e-10  Score=117.48  Aligned_cols=247  Identities=13%  Similarity=0.053  Sum_probs=175.6

Q ss_pred             HHHHhHHHHHHhhC--hHHHHHhhHHHHHHhcc-----------CCCHHHHHHHHHHHHhhhhhhc--HHHH--HHhHHH
Q 006898          299 AAAGKVTKFCRILN--PELAIQHILPCVKELSS-----------DSSQHVRSALASVIMGMAPLLG--KDAT--IEQLLP  361 (626)
Q Consensus       299 ~a~~~l~~l~~~~~--~~~~~~~l~~~l~~l~~-----------d~~~~vr~~~~~~l~~l~~~~~--~~~~--~~~l~~  361 (626)
                      .|+.+|..++..-.  ........++.+..++.           +.+..++..++.+|..++..-.  +..+  ....+|
T Consensus       167 qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp  246 (458)
T 3nmz_A          167 PAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMR  246 (458)
T ss_dssp             HHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHH
Confidence            67777777643211  01122344556665552           1346789999999999885322  1222  234689


Q ss_pred             HHHHhhcCCCHHHHHHHHHhhHHHHhhhch---hh-HHhhHHHHHHHH-hcCCChHHHHHHHHHHHHHHHhh-C--hhhH
Q 006898          362 IFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DL-LSQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQL-G--VGFF  433 (626)
Q Consensus       362 ~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~---~~-~~~~i~~~l~~~-~~~~~~~~r~~~~~~l~~l~~~~-~--~~~~  433 (626)
                      .+..+|...+++++..|+.+|..+...-+.   .. .....+|.|.++ ..+.+..++..++.++..++... +  ....
T Consensus       247 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~  326 (458)
T 3nmz_A          247 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC  326 (458)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence            999999999999999999999998653111   11 224578999996 45678899999999999888632 1  2222


Q ss_pred             -HHHHHHHHHHHhcCCch----HHHHHHHHHHHHHHHH--hChH----HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHh
Q 006898          434 -DDKLGALCMQWLQDKVY----SIRDAAANNLKRLAEE--FGPE----WAMQHITPQVLEMINNPHYLYRMTILRAISLL  502 (626)
Q Consensus       434 -~~~l~p~l~~~l~d~~~----~VR~~a~~~l~~l~~~--~~~~----~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i  502 (626)
                       ....+|.+..++.+...    .++..|+.+|..++..  .+++    ......+|.+.+++.+++..++..|+.++.++
T Consensus       327 ~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nL  406 (458)
T 3nmz_A          327 AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL  406 (458)
T ss_dssp             HSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred             HhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence             24578889999876554    4999999999999863  2222    12356789999999999999999999999999


Q ss_pred             ccccCh---HHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhh
Q 006898          503 APVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV  545 (626)
Q Consensus       503 ~~~~~~---~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~  545 (626)
                      +..-..   .......+|.|..++.++++.+|..|+.+|.++....
T Consensus       407 a~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          407 SARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             HSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred             HcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            742111   1234568999999999999999999999999998753

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.36  E-value=3.7e-10  Score=113.32  Aligned_cols=246  Identities=13%  Similarity=0.061  Sum_probs=172.5

Q ss_pred             HHHHHHHHHHHHh--CCCccccchHHHHHHhcC----------C-ChHHHHHHHHHhHHHHHHhhChH--HH--HHhhHH
Q 006898          260 MVANQLYELCEAV--GPEPTRMDLVPAYVRLLR----------D-NEAEVRIAAAGKVTKFCRILNPE--LA--IQHILP  322 (626)
Q Consensus       260 ~a~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~----------d-~~~~vr~~a~~~l~~l~~~~~~~--~~--~~~l~~  322 (626)
                      .++.+|+.++..-  .........++.+..++.          + .++.++..|+.+|..++..-...  .+  ....+|
T Consensus       167 qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp  246 (458)
T 3nmz_A          167 PAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMR  246 (458)
T ss_dssp             HHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHH
Confidence            6666666664210  000112346677777763          1 34789999999999998643211  22  135589


Q ss_pred             HHHHhccCCCHHHHHHHHHHHHhhhhhhc---HHHHH-HhHHHHHHHhh-cCCCHHHHHHHHHhhHHHHhhh-c--hhhH
Q 006898          323 CVKELSSDSSQHVRSALASVIMGMAPLLG---KDATI-EQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQVI-G--IDLL  394 (626)
Q Consensus       323 ~l~~l~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~-~~l~~~l~~~l-~d~~~~vr~~a~~~L~~~~~~~-~--~~~~  394 (626)
                      .|.+++.+.+..++..++.+|..++..-+   +..+. ...+|.+..+| ...++.++..++.+|..+.... +  ....
T Consensus       247 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~  326 (458)
T 3nmz_A          247 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC  326 (458)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence            99999999999999999999999875311   12222 24688888874 5568899999999998887622 1  1121


Q ss_pred             -HhhHHHHHHHHhcCCCh----HHHHHHHHHHHHHHHh--hChh----hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 006898          395 -SQSLLPAIVELAEDRHW----RVRLAIIEYIPLLASQ--LGVG----FFDDKLGALCMQWLQDKVYSIRDAAANNLKRL  463 (626)
Q Consensus       395 -~~~i~~~l~~~~~~~~~----~~r~~~~~~l~~l~~~--~~~~----~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l  463 (626)
                       ....+|.|.+++.+.+.    .++..+..++..++..  -+++    ......+|.+..++.+.+..++..|+.+|+.+
T Consensus       327 ~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nL  406 (458)
T 3nmz_A          327 AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL  406 (458)
T ss_dssp             HSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred             HhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence             24688999999876542    5888888888888752  1221    12234688999999999999999999999999


Q ss_pred             HHHhChH----HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhcccc
Q 006898          464 AEEFGPE----WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM  506 (626)
Q Consensus       464 ~~~~~~~----~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~  506 (626)
                      +.. .++    ......+|.|.+++..++..+|..|+.++.+++..-
T Consensus       407 a~~-~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          407 SAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             HSS-CHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred             HcC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            732 121    233567999999999999999999999999998653

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=99.35  E-value=2e-08  Score=111.53  Aligned_cols=487  Identities=9%  Similarity=0.059  Sum_probs=296.4

Q ss_pred             cHHHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhccccccccCCchHHHHHHHHHHhccccc----cCCc---c
Q 006898           10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGV---E   82 (626)
Q Consensus        10 ~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~----~~~~---~   82 (626)
                      .+..+++.+.+++.+.|..|.+-|..+-..  ++ .+.....++.  .+.++++|..++..+.+.+++    ++..   .
T Consensus        17 ~Le~av~~ly~p~~~~r~~A~~~L~~~q~s--p~-aw~~~~~iL~--~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~   91 (1023)
T 4hat_C           17 LLDQVVSTFYQGSGVQQKQAQEILTKFQDN--PD-AWQKADQILQ--FSTNPQSKFIALSILDKLITRKWKLLPNDHRIG   91 (1023)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHC--TT-GGGGHHHHHH--HCCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHH
T ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHHHcC--cc-HHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHH
Confidence            566778888777777999999888877332  22 2334444442  245789999999999876552    2211   1


Q ss_pred             hhhcchHHHhhhhcCc-----chHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCC--
Q 006898           83 HAHVLLPPLETLCTVE-----ETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPS--  155 (626)
Q Consensus        83 ~~~~l~~~l~~l~~~~-----~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~--  155 (626)
                      ..+.++..+....+++     ...+|...+.++..+++..-|+. ++.+++.+..+++.. ......+..++..+.+.  
T Consensus        92 Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~-Wp~~l~dL~~~l~~~-~~~~~~~L~iL~~L~EEV~  169 (1023)
T 4hat_C           92 IRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQN-WPEFIPELIGSSSSS-VNVCENNMIVLKLLSEEVF  169 (1023)
T ss_dssp             HHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTT-CTTHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhh-chHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHH
Confidence            3455556555544443     35678888889988888654433 455666666665433 22333334443332211  


Q ss_pred             ------CChH-----------HHHHHHHHHHHhcC-CCCHHHHHHHHHhHHHHHHhhCccc-hhhhHHHHHH-HhhcCCc
Q 006898          156 ------APDI-----------LKTELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEPAH-LKTDIMSIFE-DLTQDDQ  215 (626)
Q Consensus       156 ------~~~~-----------~~~~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~~~-~~~~ll~~l~-~l~~d~~  215 (626)
                            .+..           ..+.+++.+...++ ..++.+...+.++++.+..-.+... ..+.+++.+. .++.  +
T Consensus       170 ~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~--~  247 (1023)
T 4hat_C          170 DFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--S  247 (1023)
T ss_dssp             TSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--S
T ss_pred             HhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC--C
Confidence                  1111           22445556655553 3467788889999999887665432 2245777777 7665  4


Q ss_pred             hhHHHHHHHHHHHhhcc-c-Cch-hhhh-------hhHHHH-HHh-------------cCCCCHHHHHHHHHHHHHHHHH
Q 006898          216 DSVRLLAVEGCAALGKL-L-EPQ-DCVA-------HILPVI-VNF-------------SQDKSWRVRYMVANQLYELCEA  271 (626)
Q Consensus       216 ~~vr~~a~~~l~~l~~~-~-~~~-~~~~-------~i~~~l-~~~-------------~~d~~~~vR~~a~~~l~~l~~~  271 (626)
                      +..|..|++++..+... . ++. .+.+       .+++.+ ...             ..+.+.......+..+..+++.
T Consensus       248 ~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~  327 (1023)
T 4hat_C          248 PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLAR  327 (1023)
T ss_dssp             HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence            57999999999998863 2 221 1221       222222 110             1223455555666677666654


Q ss_pred             hCCCccc----cchH----HHHHHhcCCChHHHHHHHHHhHHHHHHhhCh-----H---HHHHhhHHHHHHhccCC----
Q 006898          272 VGPEPTR----MDLV----PAYVRLLRDNEAEVRIAAAGKVTKFCRILNP-----E---LAIQHILPCVKELSSDS----  331 (626)
Q Consensus       272 ~~~~~~~----~~l~----~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-----~---~~~~~l~~~l~~l~~d~----  331 (626)
                      ...-...    ..++    ..++.....++.++-..++.-+..+.+.+-.     .   .+...+++.+.+-+.-+    
T Consensus       328 ~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~  407 (1023)
T 4hat_C          328 NRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVL  407 (1023)
T ss_dssp             HGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCC
T ss_pred             HHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence            3321110    1222    2445555566778877788877777764321     1   12234444443322111    


Q ss_pred             -------CH---------------HHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcC--CCHHHHHHHHHhhHHHHh
Q 006898          332 -------SQ---------------HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD--EFPDVRLNIISKLDQVNQ  387 (626)
Q Consensus       332 -------~~---------------~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~L~~~~~  387 (626)
                             .|               ..|    .++..+....+ +...+.+.+.+...+.+  .++..|++++-+++.+.+
T Consensus       408 ive~d~~~~~~e~~~d~d~~~~f~~~R----d~L~~l~~l~~-~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~  482 (1023)
T 4hat_C          408 VVENDEGEIVREFVKESDTIQLYKSER----EVLVYLTHLNV-IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISG  482 (1023)
T ss_dssp             EEECTTSCEEECSSCCGGGHHHHHHHH----HHHHHHHHHCH-HHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTT
T ss_pred             cCCCCCccHHHHhccchHHHHHHHHHH----HHHHHHhccCH-HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHc
Confidence                   11               122    44444444333 34556677777776664  579999999999999988


Q ss_pred             hhchh---hHHhhHHHHHHHHhc-----CCChHHHHHHHHHHHHHHHhhCh-hhHHHHHHHHHHHHhcCCchHHHHHHHH
Q 006898          388 VIGID---LLSQSLLPAIVELAE-----DRHWRVRLAIIEYIPLLASQLGV-GFFDDKLGALCMQWLQDKVYSIRDAAAN  458 (626)
Q Consensus       388 ~~~~~---~~~~~i~~~l~~~~~-----~~~~~~r~~~~~~l~~l~~~~~~-~~~~~~l~p~l~~~l~d~~~~VR~~a~~  458 (626)
                      ....+   .+...++|.+..+.+     |+..++|..++..++...+-+.. ..+.+.++..++..+.|+++.|..+|++
T Consensus       483 ~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~  562 (1023)
T 4hat_C          483 TMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACD  562 (1023)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             CCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            77654   233567777777765     34566777788888877665421 2234556777888888999999999999


Q ss_pred             HHHHHHHHhChHH----------HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHH
Q 006898          459 NLKRLAEEFGPEW----------AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI  510 (626)
Q Consensus       459 ~l~~l~~~~~~~~----------~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~  510 (626)
                      ++..+++..+...          +.+.++..+.+...+-+...+..+.++++.+++..+...
T Consensus       563 al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~  624 (1023)
T 4hat_C          563 TFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVA  624 (1023)
T ss_dssp             HHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHH
T ss_pred             HHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHh
Confidence            9999999876543          234455555555666678888999999999999887543

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.31  E-value=1.7e-10  Score=124.56  Aligned_cols=283  Identities=13%  Similarity=0.149  Sum_probs=217.5

Q ss_pred             HHHHHHhHHHHHHhh-ChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcH----HHHHHhHHHHHHHhhcCCC
Q 006898          297 RIAAAGKVTKFCRIL-NPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK----DATIEQLLPIFLSLLKDEF  371 (626)
Q Consensus       297 r~~a~~~l~~l~~~~-~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~  371 (626)
                      +..+...+..+...- +.......+...+.+.+.++...  ..++..+..+++.++.    +.+.-.++|.++..+.|..
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~  108 (986)
T 2iw3_A           31 RHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKD  108 (986)
T ss_dssp             HHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSS
T ss_pred             HHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCc
Confidence            455555565554421 11111124567777777776555  8888888888876642    4444456889999999999


Q ss_pred             HHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHhcCC
Q 006898          372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDK  448 (626)
Q Consensus       372 ~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~r~~~~~~l~~l~~~~~~~~--~~~~l~p~l~~~l~d~  448 (626)
                      ..||.+|..++..+...+.++.. ..++|.+.+.+.+. .|+.+..++..+..+++......  ....++|.+-.++.|.
T Consensus       109 ~~v~~aa~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~  187 (986)
T 2iw3_A          109 KEIQSVASETLISIVNAVNPVAI-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDT  187 (986)
T ss_dssp             HHHHHHHHHHHHHHHHHSCGGGH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccC
Confidence            99999999999999999988876 78999999888655 69999999999999998763222  3467999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHH--hccccChHHhhhcHHHHHhhhCCCC
Q 006898          449 VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISL--LAPVMGSEITCSRLLPVVINASKDR  526 (626)
Q Consensus       449 ~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~--i~~~~~~~~~~~~~l~~l~~~l~d~  526 (626)
                      .++|..+|.+++..+|..+++.. ...++|.|.+.+.+|+.  -..++..++.  ++.... ......+.|.|.+.++++
T Consensus       188 k~~v~~~~~~~~~~~~~~~~n~d-~~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~-~~~l~~~~p~l~r~l~~~  263 (986)
T 2iw3_A          188 KKEVKAAATAAMTKATETVDNKD-IERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVT-PATLSIMVPLLSRGLNER  263 (986)
T ss_dssp             SHHHHHHHHHHHHHHGGGCCCTT-TGGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCC-HHHHHHHHHHHHHHHTSS
T ss_pred             cHHHHHHHHHHHHHHHhcCCCcc-hhhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeec-chhHHHHHHHHHhhhccC
Confidence            99999999999999999887653 46689999999999954  2333444442  222222 335678899999999999


Q ss_pred             CchHHHHHHHHHHHHHhhhccc----hhhhcccchHHhh-hccCCCcccccccccCchhHHHHHHHHHHHHHhhc
Q 006898          527 VPNIKFNVAKVLQSLIPIVDQS----VSTFSVSPFSFML-YLNVNNFNVGFIFAAFPLVLFSCLALNYCHRWWRK  596 (626)
Q Consensus       527 ~~~vR~~a~~~l~~i~~~~~~~----~~~~~i~~~l~~~-l~~d~d~~vr~~~~~~~~~~~a~~al~~~~~~~~~  596 (626)
                      ...++..++-.+.++..-..++    .|.+.++|.+. + .-.-.|+++|.         .+..|+.++....+.
T Consensus       264 ~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~-~~~~~~~~pe~r~---------~~~~a~~~l~~~~~~  328 (986)
T 2iw3_A          264 ETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLK-SNFATIADPEARE---------VTLRALKTLRRVGNV  328 (986)
T ss_dssp             SHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHH-HHTTTCCSHHHHH---------HHHHHHHHHHHHHTC
T ss_pred             cchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHH-HHhhccCCHHHHH---------HHHHHHHHHHHhhcc
Confidence            9999999999999999887764    77889999999 6 45678999999         999999999766544

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.29  E-value=7.4e-11  Score=107.17  Aligned_cols=184  Identities=16%  Similarity=0.126  Sum_probs=120.3

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHhhHHHHhhhch---hhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC---hhhH
Q 006898          360 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFF  433 (626)
Q Consensus       360 ~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~---~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~---~~~~  433 (626)
                      .|.+..+++++++.+|..|+.+|..+...-..   .......+|.+.++++++++.+|..++.++..++....   ....
T Consensus        14 ~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~   93 (210)
T 4db6_A           14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI   93 (210)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             hHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence            34455555555555555555555555422111   11112455666666666666666666666665542111   1112


Q ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh---HHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChH-
Q 006898          434 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE-  509 (626)
Q Consensus       434 ~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~-  509 (626)
                      ....+|.+..++.+++..+|..|+.+|+.++.....   .......+|.+.+++.+++..+|..++.++++++...... 
T Consensus        94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~  173 (210)
T 4db6_A           94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK  173 (210)
T ss_dssp             HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHH
Confidence            234678888888988999999999999988753211   1123567899999999999999999999999998642211 


Q ss_pred             --HhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHh
Q 006898          510 --ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP  543 (626)
Q Consensus       510 --~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~  543 (626)
                        ......++.|..++.++++.+|..|+.+|..+..
T Consensus       174 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          174 QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence              2345688999999999999999999999998753

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=99.29  E-value=3.1e-13  Score=122.87  Aligned_cols=187  Identities=22%  Similarity=0.233  Sum_probs=128.6

Q ss_pred             HHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHH
Q 006898          169 TQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVN  248 (626)
Q Consensus       169 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~  248 (626)
                      ..+++|+++.||..++..+       +.        ..+..+++|+++.||..+...+       +.        +.+..
T Consensus        56 ~~ll~d~~~~VR~~AA~~l-------~~--------~~l~~L~~D~~~~VR~~aA~~L-------~~--------~~L~~  105 (244)
T 1lrv_A           56 VQYLADPFWERRAIAVRYS-------PV--------EALTPLIRDSDEVVRRAVAYRL-------PR--------EQLSA  105 (244)
T ss_dssp             GGGTTCSSHHHHHHHHTTS-------CG--------GGGGGGTTCSSHHHHHHHHTTS-------CS--------GGGGG
T ss_pred             HHHhcCCCHHHHHHHHHhC-------CH--------HHHHHHccCcCHHHHHHHHHHC-------CH--------HHHHH
Confidence            3567888999999888865       11        2356678899999998887643       21        24567


Q ss_pred             hcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhc
Q 006898          249 FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS  328 (626)
Q Consensus       249 ~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~  328 (626)
                      +++|+++.||..++..+       +     .   +.+..+++|+++.||..++..+       +.        +.+..+.
T Consensus       106 ll~D~d~~VR~~aA~~l-------~-----~---~~L~~L~~D~d~~VR~~aA~~l-------~~--------~~l~~l~  155 (244)
T 1lrv_A          106 LMFDEDREVRITVADRL-------P-----L---EQLEQMAADRDYLVRAYVVQRI-------PP--------GRLFRFM  155 (244)
T ss_dssp             TTTCSCHHHHHHHHHHS-------C-----T---GGGGGGTTCSSHHHHHHHHHHS-------CG--------GGGGGTT
T ss_pred             HHcCCCHHHHHHHHHhC-------C-----H---HHHHHHHcCCCHHHHHHHHHhc-------CH--------HHHHHHH
Confidence            78899999998887743       1     1   2345667888899998887732       21        2345677


Q ss_pred             cCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcC
Q 006898          329 SDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED  408 (626)
Q Consensus       329 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~  408 (626)
                      +|+++.||.+++..+       +.        +.+..+++|+++.||.+++..+       +.        +.+..+++|
T Consensus       156 ~D~d~~VR~~aa~~l-------~~--------~ll~~ll~D~d~~VR~aaa~~l-------~~--------~~L~~Ll~D  205 (244)
T 1lrv_A          156 RDEDRQVRKLVAKRL-------PE--------ESLGLMTQDPEPEVRRIVASRL-------RG--------DDLLELLHD  205 (244)
T ss_dssp             TCSCHHHHHHHHHHS-------CG--------GGGGGSTTCSSHHHHHHHHHHC-------CG--------GGGGGGGGC
T ss_pred             cCCCHHHHHHHHHcC-------CH--------HHHHHHHcCCCHHHHHHHHHhC-------CH--------HHHHHHHcC
Confidence            889999998887651       11        2344677888899998888764       11        245566788


Q ss_pred             CChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 006898          409 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLK  461 (626)
Q Consensus       409 ~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~  461 (626)
                      ++|++|..+.+.++               .+.+..+ +|+++.||.++...||
T Consensus       206 ~d~~VR~~aa~~l~---------------~~~L~~L-~D~~~~VR~aa~~~L~  242 (244)
T 1lrv_A          206 PDWTVRLAAVEHAS---------------LEALREL-DEPDPEVRLAIAGRLG  242 (244)
T ss_dssp             SSHHHHHHHHHHSC---------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred             CCHHHHHHHHHcCC---------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence            88988888887653               1344455 8888888888876554

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=99.28  E-value=6.1e-08  Score=107.13  Aligned_cols=480  Identities=8%  Similarity=0.006  Sum_probs=259.5

Q ss_pred             CCchHHHHHHHHHHhccccccCCcchhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhh----cCh---hhHHHhHHHHH
Q 006898           58 DDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQ----MRE---SDLVDWYIPLV  130 (626)
Q Consensus        58 ~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~----~~~---~~~~~~l~~~l  130 (626)
                      +++++.|..|-+.|.++-.   .++.|.....++.   .+.++.+|.-|+..|....+.    +++   ..+++.++.++
T Consensus        39 ~p~~~~r~qA~~~L~q~q~---sp~aw~~~~~iL~---~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~Ll~~l  112 (1073)
T 3gjx_A           39 HGEGAQQRMAQEVLTHLKE---HPDAWTRVDTILE---FSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLI  112 (1073)
T ss_dssp             CSSHHHHHHHHHHHHTSSC---CSCHHHHHTCC------CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHc---CchHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHH
Confidence            4445556666666665533   2334443333322   234556666666666554432    232   22344455555


Q ss_pred             HHHhcCC-----ccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCcc--------
Q 006898          131 KRLAAGE-----WFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--------  197 (626)
Q Consensus       131 ~~l~~~~-----~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~--------  197 (626)
                      .....++     ...++...+.+++.++.+.-+..++++++.+...++. ++..+...+..|..+.+.+...        
T Consensus       113 ~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~  191 (1073)
T 3gjx_A          113 IKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRT-SESLCQNNMVILKLLSEEVFDFSSGQITQV  191 (1073)
T ss_dssp             HHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHTTSHHHHBCHH
T ss_pred             HHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhcccccccHH
Confidence            5443322     1233444444444444332122233334434333322 2334444555555554442210        


Q ss_pred             ----------chhhhHHHHHHHhhcC-CchhHHHHHHHHHHHhhcccCchh-hhhhhHHHH-HHhcCCCCHHHHHHHHHH
Q 006898          198 ----------HLKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEPQD-CVAHILPVI-VNFSQDKSWRVRYMVANQ  264 (626)
Q Consensus       198 ----------~~~~~ll~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~~-~~~~i~~~l-~~~~~d~~~~vR~~a~~~  264 (626)
                                ...+.+++.+...+.+ .++.+...+++++..+.+-++-.. ..+.+++.+ ...+.  ++..|..++++
T Consensus       192 r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~--~~~~r~aA~dc  269 (1073)
T 3gjx_A          192 KAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLN--VPMFRNVSLKC  269 (1073)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSS--SHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcC--ChHHHHHHHHH
Confidence                      0123455555555543 466788889999999988877643 235577766 45554  56799999999


Q ss_pred             HHHHHHHhCCCccccchHHHH---H----Hhc-------------CCChHHHHHHHHHhHHHHHHhh------ChH--HH
Q 006898          265 LYELCEAVGPEPTRMDLVPAY---V----RLL-------------RDNEAEVRIAAAGKVTKFCRIL------NPE--LA  316 (626)
Q Consensus       265 l~~l~~~~~~~~~~~~l~~~l---~----~~l-------------~d~~~~vr~~a~~~l~~l~~~~------~~~--~~  316 (626)
                      |..+...-. +.+.+.+...+   +    .++             .+++.+.-.+....+..+++..      +++  ..
T Consensus       270 L~eIv~k~~-~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~  348 (1073)
T 3gjx_A          270 LTEIAGVSV-SQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREA  348 (1073)
T ss_dssp             HHHHHHSCS-GGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHHhccc-cchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHH
Confidence            999876411 11111221111   1    111             2333343333334443333321      111  11


Q ss_pred             HHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHH---------------------------HHHHhHHHHHHHhhcC
Q 006898          317 IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---------------------------ATIEQLLPIFLSLLKD  369 (626)
Q Consensus       317 ~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~---------------------------~~~~~l~~~l~~~l~d  369 (626)
                      ....+.++......++..+-......+..+...+-.+                           .+...+...+..-+.-
T Consensus       349 l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~  428 (1073)
T 3gjx_A          349 LMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAK  428 (1073)
T ss_dssp             HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCC
Confidence            1223334455566677777777777766665432111                           1122233333333321


Q ss_pred             C-C-------------------H--HHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhc--CCChHHHHHHHHHHHHHH
Q 006898          370 E-F-------------------P--DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE--DRHWRVRLAIIEYIPLLA  425 (626)
Q Consensus       370 ~-~-------------------~--~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~r~~~~~~l~~l~  425 (626)
                      + +                   .  .++...-.+|..+. .++.+.....+++.+.+...  ..+|..+.+++-+++.++
T Consensus       429 P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt-~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIa  507 (1073)
T 3gjx_A          429 PEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLT-HLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSIS  507 (1073)
T ss_dssp             SCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTT
T ss_pred             CccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHH
Confidence            1 0                   0  12222223333332 33444444556666665544  357999999999999998


Q ss_pred             HhhChh---hHHHHHHHHHHHHhcCC-----chHHHHHHHHHHHHHHHHhChH-HHhhhhHHHHHhhhcCCChHHHHHHH
Q 006898          426 SQLGVG---FFDDKLGALCMQWLQDK-----VYSIRDAAANNLKRLAEEFGPE-WAMQHITPQVLEMINNPHYLYRMTIL  496 (626)
Q Consensus       426 ~~~~~~---~~~~~l~p~l~~~l~d~-----~~~VR~~a~~~l~~l~~~~~~~-~~~~~il~~l~~~l~~~~~~vR~~a~  496 (626)
                      ....+.   .+...+++.+..+...+     ...++...+.++|.+.+.+... .+...++..+.+.+.++++.++.+|+
T Consensus       508 g~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~  587 (1073)
T 3gjx_A          508 GAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMAC  587 (1073)
T ss_dssp             TSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHH
T ss_pred             CcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            776642   34556677777666433     3446666678888887765433 24566777777888899999999999


Q ss_pred             HHHHHhccccChHH----------hhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc
Q 006898          497 RAISLLAPVMGSEI----------TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS  548 (626)
Q Consensus       497 ~~l~~i~~~~~~~~----------~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~  548 (626)
                      .++..+++.|+...          +.+.++..+.....+=.+.-.....++++.++...++.
T Consensus       588 ~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~  649 (1073)
T 3gjx_A          588 DTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQ  649 (1073)
T ss_dssp             HHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCH
T ss_pred             HHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCc
Confidence            99999998877653          44555555555556666777778888899888887763

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=99.27  E-value=9.2e-13  Score=119.76  Aligned_cols=188  Identities=23%  Similarity=0.188  Sum_probs=113.2

Q ss_pred             HhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHH
Q 006898           91 LETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQ  170 (626)
Q Consensus        91 l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~  170 (626)
                      +..++.|+++.||..++..+       ++        ..+..+.+|+++.||..++..+.       .       +.+..
T Consensus        55 ~~~ll~d~~~~VR~~AA~~l-------~~--------~~l~~L~~D~~~~VR~~aA~~L~-------~-------~~L~~  105 (244)
T 1lrv_A           55 AVQYLADPFWERRAIAVRYS-------PV--------EALTPLIRDSDEVVRRAVAYRLP-------R-------EQLSA  105 (244)
T ss_dssp             GGGGTTCSSHHHHHHHHTTS-------CG--------GGGGGGTTCSSHHHHHHHHTTSC-------S-------GGGGG
T ss_pred             HHHHhcCCCHHHHHHHHHhC-------CH--------HHHHHHccCcCHHHHHHHHHHCC-------H-------HHHHH
Confidence            34556788888888777643       22        12455667777777776665421       1       23556


Q ss_pred             hcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhc
Q 006898          171 LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS  250 (626)
Q Consensus       171 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~  250 (626)
                      +++|+++.||..++..+       +.        +.+..+++|+++.||..+...+       +.        +.+..+.
T Consensus       106 ll~D~d~~VR~~aA~~l-------~~--------~~L~~L~~D~d~~VR~~aA~~l-------~~--------~~l~~l~  155 (244)
T 1lrv_A          106 LMFDEDREVRITVADRL-------PL--------EQLEQMAADRDYLVRAYVVQRI-------PP--------GRLFRFM  155 (244)
T ss_dssp             TTTCSCHHHHHHHHHHS-------CT--------GGGGGGTTCSSHHHHHHHHHHS-------CG--------GGGGGTT
T ss_pred             HHcCCCHHHHHHHHHhC-------CH--------HHHHHHHcCCCHHHHHHHHHhc-------CH--------HHHHHHH
Confidence            67777788887777643       11        1244567777777777766531       11        1334566


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccC
Q 006898          251 QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSD  330 (626)
Q Consensus       251 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d  330 (626)
                      +|+++.||..++..+       +     .   +.+..+++|++++||..++..+       +        .+.+..+++|
T Consensus       156 ~D~d~~VR~~aa~~l-------~-----~---~ll~~ll~D~d~~VR~aaa~~l-------~--------~~~L~~Ll~D  205 (244)
T 1lrv_A          156 RDEDRQVRKLVAKRL-------P-----E---ESLGLMTQDPEPEVRRIVASRL-------R--------GDDLLELLHD  205 (244)
T ss_dssp             TCSCHHHHHHHHHHS-------C-----G---GGGGGSTTCSSHHHHHHHHHHC-------C--------GGGGGGGGGC
T ss_pred             cCCCHHHHHHHHHcC-------C-----H---HHHHHHHcCCCHHHHHHHHHhC-------C--------HHHHHHHHcC
Confidence            777777777776641       1     1   2334566777777777777653       1        1345566777


Q ss_pred             CCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhH
Q 006898          331 SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLD  383 (626)
Q Consensus       331 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~  383 (626)
                      ++|.||.+++..++               .+.+..+ +|+++.||.++..+|+
T Consensus       206 ~d~~VR~~aa~~l~---------------~~~L~~L-~D~~~~VR~aa~~~L~  242 (244)
T 1lrv_A          206 PDWTVRLAAVEHAS---------------LEALREL-DEPDPEVRLAIAGRLG  242 (244)
T ss_dssp             SSHHHHHHHHHHSC---------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred             CCHHHHHHHHHcCC---------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence            77777777776532               1334444 7777777777776654

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.25  E-value=5.3e-10  Score=101.49  Aligned_cols=146  Identities=14%  Similarity=0.093  Sum_probs=85.2

Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhch---hhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh---hh
Q 006898          359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GF  432 (626)
Q Consensus       359 l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~---~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~---~~  432 (626)
                      .+|.+..++.++++.+|..|+.+|+.+......   .......+|.+.+++++++..+|..++.++..++.....   ..
T Consensus        55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  134 (210)
T 4db6_A           55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV  134 (210)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            344444444444444444444444444321100   011122445555555555555555555555555431110   11


Q ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChH---HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhcc
Q 006898          433 FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLEMINNPHYLYRMTILRAISLLAP  504 (626)
Q Consensus       433 ~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~  504 (626)
                      .....+|.+..++.+++..+|..|+.+|+.++......   ......++.+.+++.+++..+|..++.++.+++.
T Consensus       135 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          135 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             HHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            22346788888888888889999999998887532111   1235678889999999999999999999988764

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.20  E-value=4.7e-09  Score=113.41  Aligned_cols=255  Identities=14%  Similarity=0.195  Sum_probs=196.0

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc----cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHH
Q 006898          241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA  316 (626)
Q Consensus       241 ~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~  316 (626)
                      .++..+.+...++...  +.++.+++.++...+...    +.-.++|.++..+.|....||.+|..+...+...++++..
T Consensus        54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~  131 (986)
T 2iw3_A           54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI  131 (986)
T ss_dssp             HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH
T ss_pred             hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH
Confidence            5666677777665444  777777777776654321    1124678888889999999999999999999999998876


Q ss_pred             HHhhHHHHHHhccCC-CHHHHHHHHHHHHhhhhhhcHH--HHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhh
Q 006898          317 IQHILPCVKELSSDS-SQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL  393 (626)
Q Consensus       317 ~~~l~~~l~~l~~d~-~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~  393 (626)
                       ..++|.+...+.+. .|+.+.+++.++..+++..+..  ...+.++|.+..++.|..++|..+|..++..++..++...
T Consensus       132 -~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d  210 (986)
T 2iw3_A          132 -KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD  210 (986)
T ss_dssp             -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTT
T ss_pred             -HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcc
Confidence             77888887766544 6999999999999998765332  2356899999999999999999999999999999998877


Q ss_pred             HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHh-hC---hhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh
Q 006898          394 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ-LG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP  469 (626)
Q Consensus       394 ~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~-~~---~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~  469 (626)
                      + +..+|.|.+.+.+++.     .-+++..++.. +-   ......-+.|++.+.|.++...+++.++-.+.++++.+.+
T Consensus       211 ~-~~~~~~~~~~~~~p~~-----~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~  284 (986)
T 2iw3_A          211 I-ERFIPSLIQCIADPTE-----VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVED  284 (986)
T ss_dssp             T-GGGHHHHHHHHHCTTH-----HHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCC
T ss_pred             h-hhhHHHHHHHhcChhh-----hHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCC
Confidence            6 6688999999998853     22333333321 11   1123456899999999999999999999999999998765


Q ss_pred             HH----HhhhhHHHHHhhhcC-CChHHHHHHHHHHHHhcc
Q 006898          470 EW----AMQHITPQVLEMINN-PHYLYRMTILRAISLLAP  504 (626)
Q Consensus       470 ~~----~~~~il~~l~~~l~~-~~~~vR~~a~~~l~~i~~  504 (626)
                      ..    +...++|.+.+.... .++.+|..+-+++..+.+
T Consensus       285 ~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~  324 (986)
T 2iw3_A          285 PQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRR  324 (986)
T ss_dssp             HHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence            43    456677777765544 689999999988888744

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.19  E-value=4.6e-09  Score=102.20  Aligned_cols=215  Identities=12%  Similarity=0.066  Sum_probs=158.2

Q ss_pred             CHHHHHHHHHHHHhhhhhhc--HHHH--HHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhch---hh-HHhhHHHHHH
Q 006898          332 SQHVRSALASVIMGMAPLLG--KDAT--IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DL-LSQSLLPAIV  403 (626)
Q Consensus       332 ~~~vr~~~~~~l~~l~~~~~--~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~---~~-~~~~i~~~l~  403 (626)
                      +..++..++.+|..++..-.  +..+  ....+|.+..+|.+++++++..|+.+|..+...-+.   .. .....+|.|.
T Consensus        97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv  176 (354)
T 3nmw_A           97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM  176 (354)
T ss_dssp             HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence            46788888888888874322  1222  234689999999999999999999999988653111   11 2245788888


Q ss_pred             HH-hcCCChHHHHHHHHHHHHHHHhh-C--hhhH-HHHHHHHHHHHhcCCch----HHHHHHHHHHHHHHHHh--ChH--
Q 006898          404 EL-AEDRHWRVRLAIIEYIPLLASQL-G--VGFF-DDKLGALCMQWLQDKVY----SIRDAAANNLKRLAEEF--GPE--  470 (626)
Q Consensus       404 ~~-~~~~~~~~r~~~~~~l~~l~~~~-~--~~~~-~~~l~p~l~~~l~d~~~----~VR~~a~~~l~~l~~~~--~~~--  470 (626)
                      ++ ..+.+..++..++.++..++... +  .... ....+|.+..++.+...    .++..|+.+|..++..+  +++  
T Consensus       177 ~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~  256 (354)
T 3nmw_A          177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR  256 (354)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHH
Confidence            86 56678888988888888887622 1  1222 24578889999876554    59999999999998631  222  


Q ss_pred             --HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccCh---HHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhh
Q 006898          471 --WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV  545 (626)
Q Consensus       471 --~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~---~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~  545 (626)
                        ......+|.+.+++.+++..++..++.++.+++.....   .......+|.|..++.++++.+|..|+.+|.++...-
T Consensus       257 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~  336 (354)
T 3nmw_A          257 QILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  336 (354)
T ss_dssp             HHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence              12345799999999999999999999999999843211   1234568999999999999999999999999998764


Q ss_pred             c
Q 006898          546 D  546 (626)
Q Consensus       546 ~  546 (626)
                      +
T Consensus       337 ~  337 (354)
T 3nmw_A          337 P  337 (354)
T ss_dssp             C
T ss_pred             H
Confidence            3

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=99.06  E-value=1.5e-07  Score=107.32  Aligned_cols=328  Identities=10%  Similarity=-0.028  Sum_probs=178.6

Q ss_pred             hhHHHHHHHHHHHhhcccCchhhh---hhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc----cccch----HHH
Q 006898          216 DSVRLLAVEGCAALGKLLEPQDCV---AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----TRMDL----VPA  284 (626)
Q Consensus       216 ~~vr~~a~~~l~~l~~~~~~~~~~---~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~l----~~~  284 (626)
                      ..++..+++++..+....+.....   ..+++.+..++.+  +.+|..|+++|..++.......    ....+    +..
T Consensus       221 ~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~  298 (1204)
T 3a6p_A          221 CRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHY  298 (1204)
T ss_dssp             HHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHH
Confidence            457777888887776655543222   2477777777765  4589999999999886432111    01111    112


Q ss_pred             HHHhc--------CCChHHHHHHHHHhHHHHHHhhC----------hHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhh
Q 006898          285 YVRLL--------RDNEAEVRIAAAGKVTKFCRILN----------PELAIQHILPCVKELSSDSSQHVRSALASVIMGM  346 (626)
Q Consensus       285 l~~~l--------~d~~~~vr~~a~~~l~~l~~~~~----------~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l  346 (626)
                      ++...        .|.+.++++...+.+..++..+.          .......+++.+..+..+++..+-..++..+..+
T Consensus       299 l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~l  378 (1204)
T 3a6p_A          299 ILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGAL  378 (1204)
T ss_dssp             HHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred             HHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHH
Confidence            22222        23345666666665555543211          1122357788888888888888888888777766


Q ss_pred             hhhh--cH-H---HHHHhHHHHHHHhhc------CCC---------------------HHHHHHHHHhhHHHHhhhchhh
Q 006898          347 APLL--GK-D---ATIEQLLPIFLSLLK------DEF---------------------PDVRLNIISKLDQVNQVIGIDL  393 (626)
Q Consensus       347 ~~~~--~~-~---~~~~~l~~~l~~~l~------d~~---------------------~~vr~~a~~~L~~~~~~~~~~~  393 (626)
                      .+..  +. +   .+...+++.+...+.      +.+                     .+.|......+..++...+...
T Consensus       379 l~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~  458 (1204)
T 3a6p_A          379 FRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTS  458 (1204)
T ss_dssp             HSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            5442  11 1   234455555522111      100                     1234444455555544433222


Q ss_pred             HHhhHHHHHHHHhc-------------------------CCChHHHHHHHHHHHHHHHhh---C-hhhHHHHHHHHHHHH
Q 006898          394 LSQSLLPAIVELAE-------------------------DRHWRVRLAIIEYIPLLASQL---G-VGFFDDKLGALCMQW  444 (626)
Q Consensus       394 ~~~~i~~~l~~~~~-------------------------~~~~~~r~~~~~~l~~l~~~~---~-~~~~~~~l~p~l~~~  444 (626)
                       ...+.+.+...+.                         ++.|....+....+..++..+   . .......+.|.++..
T Consensus       459 -l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~  537 (1204)
T 3a6p_A          459 -FQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQM  537 (1204)
T ss_dssp             -HHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence             2334444433322                         224556666666666665544   1 011111233334443


Q ss_pred             h---cCCchHHHHHHHHHHHHHHHHhChH-HHhhhhHHHHHhhhcC------------CChHHHHHHHHHHHHhccccCh
Q 006898          445 L---QDKVYSIRDAAANNLKRLAEEFGPE-WAMQHITPQVLEMINN------------PHYLYRMTILRAISLLAPVMGS  508 (626)
Q Consensus       445 l---~d~~~~VR~~a~~~l~~l~~~~~~~-~~~~~il~~l~~~l~~------------~~~~vR~~a~~~l~~i~~~~~~  508 (626)
                      +   ...++.+|..++.+++.+...+... .+...++..+...+.+            .+..+|..|+.++..+++.++.
T Consensus       538 ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~  617 (1204)
T 3a6p_A          538 VLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQ  617 (1204)
T ss_dssp             HHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhH
Confidence            2   3457889999999999888765421 1334444545444444            2347999999999999987765


Q ss_pred             H--HhhhcHHHHHhhhCCCC---CchHHHHHHHHHHHHHhhhc
Q 006898          509 E--ITCSRLLPVVINASKDR---VPNIKFNVAKVLQSLIPIVD  546 (626)
Q Consensus       509 ~--~~~~~~l~~l~~~l~d~---~~~vR~~a~~~l~~i~~~~~  546 (626)
                      .  .+.+.+...+...+...   ...-+.....+++.+....+
T Consensus       618 ~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~  660 (1204)
T 3a6p_A          618 LVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFK  660 (1204)
T ss_dssp             HHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCC
Confidence            4  23455555555544322   24455666667766654433

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=99.04  E-value=2e-08  Score=91.55  Aligned_cols=177  Identities=14%  Similarity=0.165  Sum_probs=130.6

Q ss_pred             hcCCChHHHHHHHHHhHHHHHHhhChHHH--HHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHH------HHHHhH
Q 006898          288 LLRDNEAEVRIAAAGKVTKFCRILNPELA--IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD------ATIEQL  359 (626)
Q Consensus       288 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~------~~~~~l  359 (626)
                      .+-+.++.-|.+++..|.........+.+  .+-+++++.-.+.|+|..|-..+++.+..+...++..      .....+
T Consensus        54 ~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~  133 (266)
T 2of3_A           54 QLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAF  133 (266)
T ss_dssp             HHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence            33334555555555555554432211110  1223444433344788888888888888876655432      224578


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHH-
Q 006898          360 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG-  438 (626)
Q Consensus       360 ~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~-  438 (626)
                      +|.+..-+.|....||..+-..+..+....++    ..+.+.+.+.++++||+.|..++..+..+.+..|...  ...+ 
T Consensus       134 lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~----~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~--~~~l~  207 (266)
T 2of3_A          134 VPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP----LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP--LKSLS  207 (266)
T ss_dssp             HHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH----HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG--GGGGC
T ss_pred             HHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc--ccccc
Confidence            99999999999999999999999888877665    3567788888899999999999999999999998762  3356 


Q ss_pred             --HHHHHHhcCCchHHHHHHHHHHHHHHHHhChH
Q 006898          439 --ALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE  470 (626)
Q Consensus       439 --p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~  470 (626)
                        |.+..++.|++.+||.+|..++..+....|+.
T Consensus       208 ~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~  241 (266)
T 2of3_A          208 VEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ  241 (266)
T ss_dssp             HHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred             chHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence              88999999999999999999999999998876

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.03  E-value=1.6e-07  Score=77.46  Aligned_cols=214  Identities=14%  Similarity=0.126  Sum_probs=129.9

Q ss_pred             hhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccc
Q 006898          201 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMD  280 (626)
Q Consensus       201 ~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~  280 (626)
                      ..++..+..++.|+-|.|++.|+..+..+++..++- +.+.+-..+.-+-.|..-..-...+.+||.++..-+.  ....
T Consensus        31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el-~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe--~v~~  107 (253)
T 2db0_A           31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDL-YEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE--LVKS  107 (253)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGG-HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH--HHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHH-HHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH--HHHh
Confidence            445666666677777777777777777666554431 1111222222223444444555666777777765321  1245


Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHH
Q 006898          281 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL  360 (626)
Q Consensus       281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~  360 (626)
                      ++|.+..-..-.++.+|.+..++|+.++...+.  ....+..-+..++++++..-|.++..+++.++...  -.+...++
T Consensus       108 vVp~lfanyrigd~kikIn~~yaLeeIaranP~--l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~--~~yv~PfL  183 (253)
T 2db0_A          108 MIPVLFANYRIGDEKTKINVSYALEEIAKANPM--LMASIVRDFMSMLSSKNREDKLTALNFIEAMGENS--FKYVNPFL  183 (253)
T ss_dssp             HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH--HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT--HHHHGGGH
T ss_pred             hHHHHHHHHhcCCccceecHHHHHHHHHHhChH--HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC--ccccCcch
Confidence            677777666666788888888888888764322  22445555666778888888888888888776542  22445677


Q ss_pred             HHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 006898          361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL  424 (626)
Q Consensus       361 ~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l  424 (626)
                      |-+..+|.|.+.-||..|+++|..+...-..  + ..++....+-++|.+.-+....-+.++.+
T Consensus       184 prL~aLL~D~deiVRaSaVEtL~~lA~~npk--l-Rkii~~kl~e~~D~S~lv~~~V~egL~rl  244 (253)
T 2db0_A          184 PRIINLLHDGDEIVRASAVEALVHLATLNDK--L-RKVVIKRLEELNDTSSLVNKTVKEGISRL  244 (253)
T ss_dssp             HHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH--H-HHHHHHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCcchhhhHHHHHHHHHHHHcCHH--H-HHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence            8888888888888888888888887654221  2 22333333334555555555555555544

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.02  E-value=1.8e-08  Score=95.19  Aligned_cols=187  Identities=11%  Similarity=0.062  Sum_probs=139.0

Q ss_pred             hHHHHHHHhhcCCC------------HHHHHHHHHhhHHHHhhhch--hhHHhhHHHHHHH-HhcCCChHHHHHHHHHHH
Q 006898          358 QLLPIFLSLLKDEF------------PDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVE-LAEDRHWRVRLAIIEYIP  422 (626)
Q Consensus       358 ~l~~~l~~~l~d~~------------~~vr~~a~~~L~~~~~~~~~--~~~~~~i~~~l~~-~~~~~~~~~r~~~~~~l~  422 (626)
                      ..++..+..+.|+.            .+-|..|+..|..+++....  .......+|.+.. ++++++..+|..++.+++
T Consensus        28 ~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg  107 (296)
T 1xqr_A           28 EQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIG  107 (296)
T ss_dssp             HHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            34555556666542            24566777777777764332  1222356788888 999999999999999999


Q ss_pred             HHHHhhC---hhhHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHhCh---HHHhhhhHHHHHhhhcCCChHHHHHH
Q 006898          423 LLASQLG---VGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTI  495 (626)
Q Consensus       423 ~l~~~~~---~~~~~~~l~p~l~~~l~-d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~l~~~~~~vR~~a  495 (626)
                      .++....   ........+|.+..++. +++..+|..|+++|+.++....+   .+.....+|.|..++.+++..+|..+
T Consensus       108 ~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A  187 (296)
T 1xqr_A          108 TCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKS  187 (296)
T ss_dssp             HHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence            9886422   12233456788888887 56889999999999999864332   22335689999999999999999999


Q ss_pred             HHHHHHhccccCh---HHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhh
Q 006898          496 LRAISLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI  544 (626)
Q Consensus       496 ~~~l~~i~~~~~~---~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~  544 (626)
                      +++++.++..-..   ......++|.|..++.++++.||..++.+|+.+...
T Consensus       188 ~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~  239 (296)
T 1xqr_A          188 AFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD  239 (296)
T ss_dssp             HHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence            9999999865221   234567899999999999999999999999999876

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.02  E-value=1.3e-07  Score=77.99  Aligned_cols=214  Identities=17%  Similarity=0.178  Sum_probs=151.3

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHh-hcCCchhHHHHHHHHHHHhhcccCchhhhh
Q 006898          162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDL-TQDDQDSVRLLAVEGCAALGKLLEPQDCVA  240 (626)
Q Consensus       162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l-~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~  240 (626)
                      .+++..+..+++|.-|.||+.++..+..++...+.  ...-++.-+..+ -.++.-..-+....+++.++..-+.  ...
T Consensus        31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~e--l~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe--~v~  106 (253)
T 2db0_A           31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED--LYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE--LVK  106 (253)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGG--GHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH--HHH
T ss_pred             HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHH--HHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH--HHH
Confidence            56777788889999999999999999888876542  222233333333 3455445556667778877765443  356


Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhh
Q 006898          241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI  320 (626)
Q Consensus       241 ~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l  320 (626)
                      .++|.+..-..-.++..|.....+++.++...+.  ....++.-+..++.+.+..-|..|+..++.+++. +. .+....
T Consensus       107 ~vVp~lfanyrigd~kikIn~~yaLeeIaranP~--l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen-~~-~yv~Pf  182 (253)
T 2db0_A          107 SMIPVLFANYRIGDEKTKINVSYALEEIAKANPM--LMASIVRDFMSMLSSKNREDKLTALNFIEAMGEN-SF-KYVNPF  182 (253)
T ss_dssp             HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH--HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT-TH-HHHGGG
T ss_pred             hhHHHHHHHHhcCCccceecHHHHHHHHHHhChH--HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc-Cc-cccCcc
Confidence            6778877766667899999999999999876431  1124555566788888888888888777766552 22 334667


Q ss_pred             HHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHH
Q 006898          321 LPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN  386 (626)
Q Consensus       321 ~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~  386 (626)
                      +|.+..++.|.+.-||.++.+.+..++..-++   ...++...+.-++|....|.......|+.+.
T Consensus       183 LprL~aLL~D~deiVRaSaVEtL~~lA~~npk---lRkii~~kl~e~~D~S~lv~~~V~egL~rl~  245 (253)
T 2db0_A          183 LPRIINLLHDGDEIVRASAVEALVHLATLNDK---LRKVVIKRLEELNDTSSLVNKTVKEGISRLL  245 (253)
T ss_dssp             HHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH---HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH---HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999865332   2334444556678888888888888887764

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.02  E-value=2.8e-08  Score=96.62  Aligned_cols=215  Identities=12%  Similarity=0.027  Sum_probs=154.4

Q ss_pred             hHHHHHHHHHhHHHHHHhhC-hH-HH--HHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhc---HHHH-HHhHHHHHH
Q 006898          293 EAEVRIAAAGKVTKFCRILN-PE-LA--IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG---KDAT-IEQLLPIFL  364 (626)
Q Consensus       293 ~~~vr~~a~~~l~~l~~~~~-~~-~~--~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~---~~~~-~~~l~~~l~  364 (626)
                      +++++..|+.+|..++..-. .. .+  ....+|.|.+++.+++..++..++.+|..++..-+   +..+ ....+|.+.
T Consensus        97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv  176 (354)
T 3nmw_A           97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM  176 (354)
T ss_dssp             HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence            46788999999988875322 11 22  13458999999999999999999999999875311   1222 224678888


Q ss_pred             Hh-hcCCCHHHHHHHHHhhHHHHhhh-c-hhhH--HhhHHHHHHHHhcCCCh----HHHHHHHHHHHHHHHhh--Chhh-
Q 006898          365 SL-LKDEFPDVRLNIISKLDQVNQVI-G-IDLL--SQSLLPAIVELAEDRHW----RVRLAIIEYIPLLASQL--GVGF-  432 (626)
Q Consensus       365 ~~-l~d~~~~vr~~a~~~L~~~~~~~-~-~~~~--~~~i~~~l~~~~~~~~~----~~r~~~~~~l~~l~~~~--~~~~-  432 (626)
                      .+ +...++.++..++.+|..+.... + ...+  ....+|.|.+++.+++.    .++..+..++..++..+  +++. 
T Consensus       177 ~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~  256 (354)
T 3nmw_A          177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR  256 (354)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHH
Confidence            86 45677899999998888886522 1 1122  25688999999876543    58888888888887521  2211 


Q ss_pred             ---HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh---HHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhcccc
Q 006898          433 ---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM  506 (626)
Q Consensus       433 ---~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~  506 (626)
                         .....+|.+..++.+.+..+++.|+.+|..++..-..   .......+|.|.+++.+++..+|..++.++.++...-
T Consensus       257 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~  336 (354)
T 3nmw_A          257 QILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  336 (354)
T ss_dssp             HHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence               1234688999999999999999999999999732111   1233567999999999999999999999999998754


Q ss_pred             C
Q 006898          507 G  507 (626)
Q Consensus       507 ~  507 (626)
                      +
T Consensus       337 ~  337 (354)
T 3nmw_A          337 P  337 (354)
T ss_dssp             C
T ss_pred             H
Confidence            3

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=99.02  E-value=5e-09  Score=102.07  Aligned_cols=255  Identities=12%  Similarity=0.080  Sum_probs=162.6

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhH
Q 006898          164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHIL  243 (626)
Q Consensus       164 l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~  243 (626)
                      +...+..-+-|++|++|..|+-+|..+.+..+...-..        ...+.+-.+|..++-+|.+++...+.+       
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~--------~~~N~DLAvRLLCVLALDRFGDYVSDq-------  239 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ--------IRVDSKLFSKIYEILVTDKFNDFVDDR-------  239 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC--------CCCCTTHHHHHHHHHHHBCCBBCSSSS-------
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee--------ccccHHHHHHHHHHHHhccccccccCe-------
Confidence            44566666789999999999999999998765411100        112224467777777777766655442       


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHH
Q 006898          244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPC  323 (626)
Q Consensus       244 ~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~  323 (626)
                               ....||+++++++|.+ .+++.+   ..++..++..+....|++|.+++-.+.-+.+.+..   .+.+++.
T Consensus       240 ---------VVAPVRETaAQtLGaL-~hLp~e---~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~---Ld~Vv~a  303 (800)
T 3oc3_A          240 ---------TVAPVRDAAAYLLSRI-YPLIGP---NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED---KDGLCRK  303 (800)
T ss_dssp             ---------CBCHHHHHHHHHHHHH-TTTSCS---CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC---HHHHHHH
T ss_pred             ---------eeeehHHHHHHHHHHH-HhCChh---HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH---HHHHHHH
Confidence                     1245889999999888 666655   34444444455677789998888888777333332   4667888


Q ss_pred             HHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcC--CCHHHHHHHHHhhHHHHhhhchhhHHhhHHHH
Q 006898          324 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD--EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA  401 (626)
Q Consensus       324 l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~  401 (626)
                      +...++|.+.+||..++.++..++.  +  ...+.++..+-.+|.+  +-..--...+..|+.++..-........++|.
T Consensus       304 VL~GL~D~DDDVRAVAAetLiPIA~--p--~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPR  379 (800)
T 3oc3_A          304 LVSLLSSPDEDIKLLSAELLCHFPI--T--DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKD  379 (800)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHTTSCC--S--STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGG
T ss_pred             HHhhcCCcccHHHHHHHHHhhhhcc--h--hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHH
Confidence            8888888889999998888888771  1  1123333444333332  22222234445555555432211111367788


Q ss_pred             HHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHH-HHHHhcCCchHHHHHHHHHHH
Q 006898          402 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL-CMQWLQDKVYSIRDAAANNLK  461 (626)
Q Consensus       402 l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~-l~~~l~d~~~~VR~~a~~~l~  461 (626)
                      +..++.++-..||.++++++..+.        ...++.. +...+-.++.+|+..+.+++.
T Consensus       380 L~PFLRHtITSVR~AVL~TL~tfL--------~~~~LRLIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          380 IFPCFTSPVPEVRTSILNMVKNLS--------EESIDFLVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             TGGGGTCSSHHHHHHHHHHTTTCC--------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHhhhcCCcHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            888888888899999888886654        1223333 445677788889998888885

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=99.01  E-value=6.7e-09  Score=99.58  Aligned_cols=291  Identities=14%  Similarity=0.045  Sum_probs=162.3

Q ss_pred             CCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhccc
Q 006898          154 PSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL  233 (626)
Q Consensus       154 ~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~  233 (626)
                      ..+++.....+..-+.+++..++...|+.+.-.+..++..  ++... -..+.+.+-++|+++.+|..|+.++..+..  
T Consensus        59 ~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~--~~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--  133 (355)
T 3tjz_B           59 EHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI--AEDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITD--  133 (355)
T ss_dssp             CCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT--SSCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--
T ss_pred             CCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC--HHHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--
Confidence            3455555667777788899999999999999999888776  33333 677888889999999999999999988753  


Q ss_pred             CchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCh
Q 006898          234 EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP  313 (626)
Q Consensus       234 ~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  313 (626)
                        ....+.+.+.+++.+.|+++.||..|+-+...+....++  ..+.+++.+.+++.|.++.|..+|+..+..+.+. +.
T Consensus       134 --~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe--~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~-d~  208 (355)
T 3tjz_B          134 --STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD--VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN-DR  208 (355)
T ss_dssp             --TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH--HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT-CH
T ss_pred             --HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH--HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh-ch
Confidence              345677888999999999999999999888776543221  1245777888889999999998888888887653 22


Q ss_pred             HHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhh
Q 006898          314 ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL  393 (626)
Q Consensus       314 ~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~  393 (626)
                      . ....+++.+.+. .-.++.....+++.+..++..- .+.....+.+.+..+++..++.|..+|++++-.+.. .+...
T Consensus       209 ~-a~~kLv~~l~~~-~l~~~~~q~~llr~l~~~~~~d-~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~~~  284 (355)
T 3tjz_B          209 L-AVSKMISKFTRH-GLKSPFAYCMMIRVASRQLEDE-DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSAKE  284 (355)
T ss_dssp             H-HHHHHHHHHHSS-CCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHHHHHHHHTC---------
T ss_pred             H-HHHHHHHHHhcC-CCcChHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCHHH
Confidence            1 223344443321 1123443344444444433211 012345788888999999999999999988877644 12111


Q ss_pred             HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 006898          394 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLK  461 (626)
Q Consensus       394 ~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~  461 (626)
                      . ......+..++.+++..+|..++..+..++...+...  ...-..+..++.|++..++..|..+|-
T Consensus       285 ~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v--~~~n~~ie~li~d~n~sI~t~Aittll  349 (355)
T 3tjz_B          285 L-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAV--TACNLDLENLVTDANRSIATLAITTLL  349 (355)
T ss_dssp             ----CCCTHHHHHHSSSSSSHHHHHHCC----------------------------------------
T ss_pred             H-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHH--HHHHHHHHHHccCCcHhHHHHHHHHhh
Confidence            1 2233444555666677778888777777765433211  123334566677777777766665543

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=99.00  E-value=6.9e-08  Score=88.00  Aligned_cols=137  Identities=13%  Similarity=0.131  Sum_probs=113.1

Q ss_pred             cCCChHHHHHHHHHHHHHHHhhChh------hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHH
Q 006898          407 EDRHWRVRLAIIEYIPLLASQLGVG------FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV  480 (626)
Q Consensus       407 ~~~~~~~r~~~~~~l~~l~~~~~~~------~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l  480 (626)
                      .|.|..+-..+++.+..+...++..      .-...++|.+..-++|+...||..+-..+..+...+++    ..+++.+
T Consensus        97 ~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~----~~v~~~l  172 (266)
T 2of3_A           97 FETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP----LKMTPML  172 (266)
T ss_dssp             TSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH----HHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH----HHHHHHH
Confidence            4667777777777777766554321      11356899999999999999999999999999887765    4578888


Q ss_pred             HhhhcCCChHHHHHHHHHHHHhccccChHHhhhcHH---HHHhhhCCCCCchHHHHHHHHHHHHHhhhccch
Q 006898          481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLL---PVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV  549 (626)
Q Consensus       481 ~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l---~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~  549 (626)
                      .+.+.+.||++|..++..++.+.+..|...  ...+   |.+..++.|++.+||.+|..++..+....|+..
T Consensus       173 ~~g~ksKN~R~R~e~l~~l~~li~~~G~~~--~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v  242 (266)
T 2of3_A          173 LDALKSKNARQRSECLLVIEYYITNAGISP--LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQM  242 (266)
T ss_dssp             HHGGGCSCHHHHHHHHHHHHHHHHHHCSGG--GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred             HHHHccCCHHHHHHHHHHHHHHHHhcCCCc--cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence            888899999999999999999999888662  4567   999999999999999999999999999988753

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=98.99  E-value=6.4e-07  Score=102.21  Aligned_cols=399  Identities=13%  Similarity=0.071  Sum_probs=218.1

Q ss_pred             CChHHHHHHHHHHHHhcC-------CCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHH
Q 006898          156 APDILKTELRSIYTQLCQ-------DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAA  228 (626)
Q Consensus       156 ~~~~~~~~l~~~l~~l~~-------d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~  228 (626)
                      ++++.+..+...++..+.       +..+.||...+.++..++....+ ..|+.+++.+.++++. ++..+..++..|..
T Consensus        82 l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p-~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~  159 (1204)
T 3a6p_A           82 MSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP-QHWPDMLIELDTLSKQ-GETQTELVMFILLR  159 (1204)
T ss_dssp             SCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHhcC-CHHHHHHHHHHHHH
Confidence            344444444444444322       24588999999999999887655 4467888888888765 45567778888888


Q ss_pred             hhcccCc-----hh-----------hhhhhHHHHHHhcCC-------------------CCHHHHHHHHHHHHHHHHHhC
Q 006898          229 LGKLLEP-----QD-----------CVAHILPVIVNFSQD-------------------KSWRVRYMVANQLYELCEAVG  273 (626)
Q Consensus       229 l~~~~~~-----~~-----------~~~~i~~~l~~~~~d-------------------~~~~vR~~a~~~l~~l~~~~~  273 (626)
                      +.+....     ..           ..+.+++.+...+.+                   .+..++..+.+++.......+
T Consensus       160 L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~  239 (1204)
T 3a6p_A          160 LAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS  239 (1204)
T ss_dssp             HHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC
T ss_pred             HHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccC
Confidence            7654211     00           012333433333322                   122345555555543322111


Q ss_pred             CCcc---ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC-hHH---HHHhh----HHHHHHhc--------cCCCHH
Q 006898          274 PEPT---RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN-PEL---AIQHI----LPCVKELS--------SDSSQH  334 (626)
Q Consensus       274 ~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~~~---~~~~l----~~~l~~l~--------~d~~~~  334 (626)
                      ....   ...+++.+..++.+  +++|..|+++|..+...-. ++.   +...+    +..+.+..        .+.+..
T Consensus       240 ~~~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e  317 (1204)
T 3a6p_A          240 MSHITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYV  317 (1204)
T ss_dssp             HHHHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHH
T ss_pred             HHHHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHH
Confidence            1111   12478888877775  5799999999999987432 221   11111    11122221        223456


Q ss_pred             HHHHHHHHHHhhhhhhcH----------HHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhc--hhhHHhhHHHHH
Q 006898          335 VRSALASVIMGMAPLLGK----------DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--IDLLSQSLLPAI  402 (626)
Q Consensus       335 vr~~~~~~l~~l~~~~~~----------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~--~~~~~~~i~~~l  402 (626)
                      +++.+++.+..++..+-.          ......+++.++.++.+++..|-..++.....+.+...  .+.....+++.+
T Consensus       318 ~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~L  397 (1204)
T 3a6p_A          318 FLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKY  397 (1204)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHH
Confidence            677777776666532211          11244688899999999888888888877776655432  111112233333


Q ss_pred             HHHh----------cCCC---------------------hHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcC----
Q 006898          403 VELA----------EDRH---------------------WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD----  447 (626)
Q Consensus       403 ~~~~----------~~~~---------------------~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d----  447 (626)
                      .+.+          .+.+                     |..|......+..++... +....+.+.+.+...+.+    
T Consensus       398 l~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~-p~~~l~~v~~~l~~~l~~~l~~  476 (1204)
T 3a6p_A          398 LRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLD-PKTSFQMAGEWLKYQLSTFLDA  476 (1204)
T ss_dssp             HHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHTCC---
T ss_pred             HHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHhhhhcc
Confidence            2222          1000                     345666666666655443 222333444444333332    


Q ss_pred             ---------------------CchHHHHHHHHHHHHHHHHh---C-hHHHhhhhHHHHHhhh---cCCChHHHHHHHHHH
Q 006898          448 ---------------------KVYSIRDAAANNLKRLAEEF---G-PEWAMQHITPQVLEMI---NNPHYLYRMTILRAI  499 (626)
Q Consensus       448 ---------------------~~~~VR~~a~~~l~~l~~~~---~-~~~~~~~il~~l~~~l---~~~~~~vR~~a~~~l  499 (626)
                                           +.+...++....+..+...+   . .+.....+.|.+.+.+   +..++.+|...+.++
T Consensus       477 ~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l  556 (1204)
T 3a6p_A          477 GSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNV  556 (1204)
T ss_dssp             --------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHH
T ss_pred             cccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Confidence                                 11122334344444444333   1 1111113456666642   345888999999999


Q ss_pred             HHhccccCh-HHhhhcHHHHHhhhCCC------------CCchHHHHHHHHHHHHHhhhccc--hhhhcccchHH
Q 006898          500 SLLAPVMGS-EITCSRLLPVVINASKD------------RVPNIKFNVAKVLQSLIPIVDQS--VSTFSVSPFSF  559 (626)
Q Consensus       500 ~~i~~~~~~-~~~~~~~l~~l~~~l~d------------~~~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~  559 (626)
                      +.+...+.. ..+...++..++..+.+            .+.+||..|+.++..+...++..  ++.+.+...+.
T Consensus       557 ~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~  631 (1204)
T 3a6p_A          557 SALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVK  631 (1204)
T ss_dssp             HHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHH
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            988876542 23556666666655544            23479999999999999887653  34445555554

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=98.97  E-value=2e-08  Score=97.95  Aligned_cols=253  Identities=13%  Similarity=-0.003  Sum_probs=166.2

Q ss_pred             HHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhccccccccCCchHHHHHHHHHHhccccccCCcchhhcchHHH
Q 006898           12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPL   91 (626)
Q Consensus        12 ~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l   91 (626)
                      ..|...|-++.++.|-.|.-+|.++.+..|..-.+.       ...+.+--+|.-+.-+|.+|..++++..         
T Consensus       177 E~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~-------~~~N~DLAvRLLCVLALDRFGDYVSDqV---------  240 (800)
T 3oc3_A          177 EQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ-------IRVDSKLFSKIYEILVTDKFNDFVDDRT---------  240 (800)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC-------CCCCTTHHHHHHHHHHHBCCBBCSSSSC---------
T ss_pred             HHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee-------ccccHHHHHHHHHHHHhccccccccCee---------
Confidence            467777889999999999999999988777532221       1122266677777778888877766421         


Q ss_pred             hhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHh
Q 006898           92 ETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQL  171 (626)
Q Consensus        92 ~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l  171 (626)
                             ..-||+.|+++|+.+ .+++++  . .++..+......+.|.+|.++.-.+..+.+....  .+.+.+.+...
T Consensus       241 -------VAPVRETaAQtLGaL-~hLp~e--~-~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~--Ld~Vv~aVL~G  307 (800)
T 3oc3_A          241 -------VAPVRDAAAYLLSRI-YPLIGP--N-DIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED--KDGLCRKLVSL  307 (800)
T ss_dssp             -------BCHHHHHHHHHHHHH-TTTSCS--C-CHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC--HHHHHHHHHHH
T ss_pred             -------eeehHHHHHHHHHHH-HhCChh--H-HHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH--HHHHHHHHHhh
Confidence                   233899999999999 888876  1 2222222344666788888777666665333322  67788888888


Q ss_pred             cCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCch--hHHHHHHHHHHHhhcccCchhhhhhhHHHHHHh
Q 006898          172 CQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQD--SVRLLAVEGCAALGKLLEPQDCVAHILPVIVNF  249 (626)
Q Consensus       172 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~--~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~  249 (626)
                      ++|.+.+||..|+.+|..++    .+...+.++..+...+.+.++  ..-...+..|+.++.+-......+.++|-+..+
T Consensus       308 L~D~DDDVRAVAAetLiPIA----~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~PF  383 (800)
T 3oc3_A          308 LSSPDEDIKLLSAELLCHFP----ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKDIFPC  383 (800)
T ss_dssp             TTCSSHHHHHHHHHHHTTSC----CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGGG
T ss_pred             cCCcccHHHHHHHHHhhhhc----chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHHHHhh
Confidence            88888899999998888877    223345566666666554432  223345566666665543322234677777888


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHH-HHHhcCCChHHHHHHHHHhHH
Q 006898          250 SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPA-YVRLLRDNEAEVRIAAAGKVT  305 (626)
Q Consensus       250 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~-l~~~l~d~~~~vr~~a~~~l~  305 (626)
                      +.++-..||.++++++..+.        ...++.. +.+++-+++++++..+.+.+.
T Consensus       384 LRHtITSVR~AVL~TL~tfL--------~~~~LRLIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          384 FTSPVPEVRTSILNMVKNLS--------EESIDFLVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             GTCSSHHHHHHHHHHTTTCC--------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             hcCCcHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            88888889998888876554        1223333 345556777788888777764

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=98.95  E-value=7.3e-06  Score=90.75  Aligned_cols=469  Identities=12%  Similarity=0.065  Sum_probs=261.1

Q ss_pred             cchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcC----CCChHHH
Q 006898           86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYP----SAPDILK  161 (626)
Q Consensus        86 ~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~----~~~~~~~  161 (626)
                      .+-.++..+.+ +++..|+.|-+.|..+-+.-.   .+.....++   ..+.+..+|..|+..+.....    .++++.+
T Consensus        29 ~Le~lv~~ly~-p~~~~r~qA~~~L~q~q~sp~---aw~~~~~iL---~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~  101 (1073)
T 3gjx_A           29 LLDNVVNCLYH-GEGAQQRMAQEVLTHLKEHPD---AWTRVDTIL---EFSQNMNTKYYGLQILENVIKTRWKILPRNQC  101 (1073)
T ss_dssp             HHHHHHHTTTC-SSHHHHHHHHHHHHTSSCCSC---HHHHHTCC------CCSHHHHHHHHHHHHHHHHHTGGGSCHHHH
T ss_pred             HHHHHHHHHhC-CCHHHHHHHHHHHHHHHcCch---HHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHH
Confidence            33334444443 455678888887766543211   122222222   133467889988888877544    4566555


Q ss_pred             HHHHHHHH----HhcCC-----CCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcc
Q 006898          162 TELRSIYT----QLCQD-----DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKL  232 (626)
Q Consensus       162 ~~l~~~l~----~l~~d-----~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~  232 (626)
                      ..+...++    ....+     .++.++...+.++..++...-++. |+.+++.+....+.+ +..+...+..|..+.+.
T Consensus       102 ~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~-Wp~fi~dLv~~~~~~-~~~~~~~L~IL~~L~EE  179 (1073)
T 3gjx_A          102 EGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKH-WPTFISDIVGASRTS-ESLCQNNMVILKLLSEE  179 (1073)
T ss_dssp             HHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTT-CTTHHHHHHHHHHHC-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhh-ccHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHH
Confidence            54444444    43333     357788999999999998765533 677777777776543 44556677777666654


Q ss_pred             cCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcC-CChHHHHHHHHHhHHHHHHhh
Q 006898          233 LEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRIL  311 (626)
Q Consensus       233 ~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~  311 (626)
                      +..-. ..       +...+....++......             ...+++.+...++ ..++++...++++++.+...+
T Consensus       180 V~d~~-~~-------~l~~~r~~~lk~~L~~~-------------~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI  238 (1073)
T 3gjx_A          180 VFDFS-SG-------QITQVKAKHLKDSMCNE-------------FSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWI  238 (1073)
T ss_dssp             HTTSH-HH-------HBCHHHHHHHHHHHHHT-------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTS
T ss_pred             HHhcc-cc-------cccHHHHHHHHHHHHHH-------------HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhc
Confidence            32210 00       00000011111111111             1334444444442 345788888899999998888


Q ss_pred             ChHHH-HHhhHHHH-HHhccCCCHHHHHHHHHHHHhhhhhhcHH--HHHHhHHHHH----HHhh-------------cCC
Q 006898          312 NPELA-IQHILPCV-KELSSDSSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIF----LSLL-------------KDE  370 (626)
Q Consensus       312 ~~~~~-~~~l~~~l-~~l~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l----~~~l-------------~d~  370 (626)
                      +...+ ...+++.+ ..++  .++.+|.++++++..+...-..+  .....+...+    ...+             .+.
T Consensus       239 ~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~  316 (1073)
T 3gjx_A          239 PLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDD  316 (1073)
T ss_dssp             CTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTT
T ss_pred             CHHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchh
Confidence            76643 34566766 4555  35688999999999887541111  1111122111    1122             122


Q ss_pred             CHHHHHHHHHhhHHHHhhhc------hh--hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChh-----------
Q 006898          371 FPDVRLNIISKLDQVNQVIG------ID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG-----------  431 (626)
Q Consensus       371 ~~~vr~~a~~~L~~~~~~~~------~~--~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~-----------  431 (626)
                      +.+.-.+.+..+..+++...      ++  ......+..+..+...++..+-...++.+..+...+-.+           
T Consensus       317 d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~  396 (1073)
T 3gjx_A          317 EQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLL  396 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccc
Confidence            22333333333333332211      11  011123334455666778888888888887776643110           


Q ss_pred             ---------h----H---HHHHHHHHHHHhcCCc----------------------hHHHHHHHHHHHHHHHHhChHHHh
Q 006898          432 ---------F----F---DDKLGALCMQWLQDKV----------------------YSIRDAAANNLKRLAEEFGPEWAM  473 (626)
Q Consensus       432 ---------~----~---~~~l~p~l~~~l~d~~----------------------~~VR~~a~~~l~~l~~~~~~~~~~  473 (626)
                               .    +   ...+...+...+.-+.                      .+++..--.++..+. .++.....
T Consensus       397 ~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt-~l~~~~~~  475 (1073)
T 3gjx_A          397 SGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLT-HLDYVDTE  475 (1073)
T ss_dssp             TSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHH-HHCHHHHH
T ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHh-cCCHHHHH
Confidence                     0    1   1222333333332110                      012333334444443 34444445


Q ss_pred             hhhHHHHHhhhcC--CChHHHHHHHHHHHHhccccChH---HhhhcHHHHHhhhCCCC-----CchHHHHHHHHHHHHHh
Q 006898          474 QHITPQVLEMINN--PHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDR-----VPNIKFNVAKVLQSLIP  543 (626)
Q Consensus       474 ~~il~~l~~~l~~--~~~~vR~~a~~~l~~i~~~~~~~---~~~~~~l~~l~~~l~d~-----~~~vR~~a~~~l~~i~~  543 (626)
                      ..+++.+.+.++.  .+|..+.+++.++|.++..+..+   .+...+++.|..+...+     .+.++.+++.++|+..+
T Consensus       476 ~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~  555 (1073)
T 3gjx_A          476 IIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPR  555 (1073)
T ss_dssp             HHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHH
Confidence            5566777655443  57999999999999998877642   56788888888877544     45688888899999877


Q ss_pred             hhccc-hhhhcccchHHhhhccCCCcccccccccCchhHHHHHHHHHHHHHhhcC
Q 006898          544 IVDQS-VSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCHRWWRKQ  597 (626)
Q Consensus       544 ~~~~~-~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~~~~~~~  597 (626)
                      .+... .+...++.-+. ....|+++.|..         +|+.|+.++.+-.+.+
T Consensus       556 wl~~h~~~L~~vl~~L~-~~m~~~~~~vq~---------aA~~af~~i~~~C~~~  600 (1073)
T 3gjx_A          556 FLRAHWKFLKTVVNKLF-EFMHETHDGVQD---------MACDTFIKIAQKCRRH  600 (1073)
T ss_dssp             HHHHCHHHHHHHHHHHH-HHTTCCSTTHHH---------HHHHHHHHHHHHTGGG
T ss_pred             HHHhCHHHHHHHHHHHH-HHHhcCCHHHHH---------HHHHHHHHHHHHHHHH
Confidence            76542 34444555555 567799999999         9999999987655544

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.92  E-value=6.2e-08  Score=83.79  Aligned_cols=183  Identities=12%  Similarity=0.120  Sum_probs=151.3

Q ss_pred             hHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchh---hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChh-hH
Q 006898          358 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG-FF  433 (626)
Q Consensus       358 ~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~-~~  433 (626)
                      ..+..+..++.|.|+.++..++.++.++.+..+..   ...+.++|.+.++..+++.++-..|++++..+....+.. ..
T Consensus        33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~  112 (265)
T 3b2a_A           33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT  112 (265)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence            35677888999999999999999999998874221   223678999999999999999999999999998876432 22


Q ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhh
Q 006898          434 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCS  513 (626)
Q Consensus       434 ~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~  513 (626)
                      ...+...+...+.++++-++..++..++.+ +...   ....+...+..++.++|.+++.+++.++.+++...+.....+
T Consensus       113 y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~~---~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~  188 (265)
T 3b2a_A          113 FLKAAKTLVSLLESPDDMMRIETIDVLSKL-QPLE---DSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLT  188 (265)
T ss_dssp             HHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSC---CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGG
T ss_pred             HHHHHHHHHHHhcCCCchHHHHHHHHhCcC-Cccc---chHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHH
Confidence            356788888899999999999999999998 2222   246688888888899999999999999999998777655667


Q ss_pred             cHHHHHhhhCCCCCchHHHHHHHHHHHHHhh
Q 006898          514 RLLPVVINASKDRVPNIKFNVAKVLQSLIPI  544 (626)
Q Consensus       514 ~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~  544 (626)
                      .++..+..+++.+++.++..|..++..+...
T Consensus       189 ~I~~eI~elL~~eD~~l~e~aLd~Le~ils~  219 (265)
T 3b2a_A          189 LILDEIPSLLQNDNEFIVELALDVLEKALSF  219 (265)
T ss_dssp             GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            7777788888899999999999999999876

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=98.90  E-value=4e-08  Score=92.82  Aligned_cols=171  Identities=15%  Similarity=0.108  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHHHHHHhhCh--hhHHHHHHHHHHH-HhcCCchHHHHHHHHHHHHHHHHhCh---HHHhhhhHHHHHhhhc
Q 006898          412 RVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQ-WLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMIN  485 (626)
Q Consensus       412 ~~r~~~~~~l~~l~~~~~~--~~~~~~l~p~l~~-~l~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~l~  485 (626)
                      ..|..++..+..+++....  .+.....+|.++. ++.++++.||..|+++|+.++.....   .......+|.|.+++.
T Consensus        55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~  134 (296)
T 1xqr_A           55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD  134 (296)
T ss_dssp             HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHc
Confidence            4567777777777664321  1222345788888 99999999999999999999864211   1234568899999887


Q ss_pred             -CCChHHHHHHHHHHHHhccccCh---HHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhcc---chhhhcccchH
Q 006898          486 -NPHYLYRMTILRAISLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SVSTFSVSPFS  558 (626)
Q Consensus       486 -~~~~~vR~~a~~~l~~i~~~~~~---~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~---~~~~~~i~~~l  558 (626)
                       +++..+|..+++++++++....+   .+.....+|.|..++++++..+|..|+++|..+......   ......++|.|
T Consensus       135 ~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~L  214 (296)
T 1xqr_A          135 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQL  214 (296)
T ss_dssp             HCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHH
Confidence             46889999999999999875433   223456899999999999999999999999999865222   13345788888


Q ss_pred             HhhhccCCCcccccccccCchhHHHHHHHHHHHH
Q 006898          559 FMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCHR  592 (626)
Q Consensus       559 ~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~~  592 (626)
                      . .++.+++.+++.         .|..||..+..
T Consensus       215 v-~LL~~~d~~v~~---------~al~aL~~l~~  238 (296)
T 1xqr_A          215 V-ALVRTEHSPFHE---------HVLGALCSLVT  238 (296)
T ss_dssp             H-HHHTSCCSTHHH---------HHHHHHHHHHT
T ss_pred             H-HHHcCCChhHHH---------HHHHHHHHHHh
Confidence            8 889999999999         88888887753

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.87  E-value=3.2e-07  Score=79.39  Aligned_cols=184  Identities=12%  Similarity=0.094  Sum_probs=146.8

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc---cchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc-hh
Q 006898          162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QD  237 (626)
Q Consensus       162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~  237 (626)
                      ++.+..+..++.|.++.++..+..+++.+.+..++   ......++|.+..++.++++.|-..|++++..+.+..+. +.
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            34667788888999999999999999999887654   234567888899999999999999999999999988876 44


Q ss_pred             hhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHH
Q 006898          238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAI  317 (626)
Q Consensus       238 ~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~  317 (626)
                      ....+...+.....+++.-.+..++..+|.+    ........+...+..+++..+++++.+++.++-.++..-+.....
T Consensus       112 ~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl----kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~  187 (265)
T 3b2a_A          112 TFLKAAKTLVSLLESPDDMMRIETIDVLSKL----QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHL  187 (265)
T ss_dssp             HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC----CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCG
T ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHhCcC----CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHH
Confidence            5667788888888889999999999988877    112223567888888888888999999999988888766655555


Q ss_pred             HhhHHHHHHhccCCCHHHHHHHHHHHHhhhhh
Q 006898          318 QHILPCVKELSSDSSQHVRSALASVIMGMAPL  349 (626)
Q Consensus       318 ~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~  349 (626)
                      +.++.-+..++++.++.++.-+...+..+.+.
T Consensus       188 ~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~  219 (265)
T 3b2a_A          188 TLILDEIPSLLQNDNEFIVELALDVLEKALSF  219 (265)
T ss_dssp             GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            67777778888888999998888887777654

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=98.87  E-value=5.4e-08  Score=85.32  Aligned_cols=140  Identities=20%  Similarity=0.229  Sum_probs=114.5

Q ss_pred             hhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHhCCCccc
Q 006898          200 KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPTR  278 (626)
Q Consensus       200 ~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~-~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~  278 (626)
                      .+++++.+..+.+++..+||..|+..++.. .      ....+++.+.. +..|++|.||..++.+++.++...+.    
T Consensus        69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~p----  137 (240)
T 3l9t_A           69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEY----  137 (240)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCT----
T ss_pred             HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCH----
Confidence            467889999999999999999999988876 2      13568899987 88999999999999999999975442    


Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhh
Q 006898          279 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL  350 (626)
Q Consensus       279 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~  350 (626)
                      +..++.+....+|+++.||..|...+..++.........+.++|.+..+..|++..||.+++.+|..+++.-
T Consensus       138 e~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~  209 (240)
T 3l9t_A          138 KKALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF  209 (240)
T ss_dssp             TTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC
Confidence            347788999999999999999998875544432222233567899999999999999999999999998753

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=98.86  E-value=2.6e-08  Score=94.33  Aligned_cols=182  Identities=14%  Similarity=0.086  Sum_probs=138.2

Q ss_pred             HHHHhcCCChHHHHHHHHHHHHHHHhhChhhHH-------HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChH----
Q 006898          402 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD-------DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE----  470 (626)
Q Consensus       402 l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~-------~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~----  470 (626)
                      +.+-+.+++|..|..+++.+..+..........       ..+.+.+...+.|.+..|...++.++..++..++..    
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~   93 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN   93 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            456678999999999999998877654322211       123556777889999999999999999998766532    


Q ss_pred             ----HHhhhhHHHHHh-hhcCCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhh
Q 006898          471 ----WAMQHITPQVLE-MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV  545 (626)
Q Consensus       471 ----~~~~~il~~l~~-~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~  545 (626)
                          .....++|.+.+ .+.+....+|..+..++..+++.....   ..+++.+...+++++|.+|..++..|..+...+
T Consensus        94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~---~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f  170 (278)
T 4ffb_C           94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI---TQSVELVIPFFEKKLPKLIAAAANCVYELMAAF  170 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS---HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence                123567787775 589999999999999998887655432   345677788889999999999999999999988


Q ss_pred             ccch-----hhhcccchHHhhhccCCCcccccccccCchhHHHHHHHHHHHHHhhc
Q 006898          546 DQSV-----STFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCHRWWRK  596 (626)
Q Consensus       546 ~~~~-----~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~~~~~~  596 (626)
                      |...     ..+.+++.+. +++.|+|.+||.         .|...+..+..++|.
T Consensus       171 g~~~~~~k~~l~~i~~~l~-k~l~d~~~~VR~---------aA~~l~~~ly~~~G~  216 (278)
T 4ffb_C          171 GLTNVNVQTFLPELLKHVP-QLAGHGDRNVRS---------QTMNLIVEIYKVTGN  216 (278)
T ss_dssp             TTTTCCHHHHHHHHGGGHH-HHHTCSSHHHHH---------HHHHHHHHHHTC---
T ss_pred             CCCcCCchhHHHHHHHHHH-HHHhCCcHHHHH---------HHHHHHHHHHHHhCc
Confidence            7642     2345777888 899999999999         999998888777664

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.85  E-value=6.8e-08  Score=92.62  Aligned_cols=243  Identities=13%  Similarity=0.031  Sum_probs=89.1

Q ss_pred             HHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHH
Q 006898          284 AYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIF  363 (626)
Q Consensus       284 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l  363 (626)
                      .+.+=++++++-+|..|+.+++.+..    +.+.+.+.+.+.+.+.|+++.||++|+-+...+....+ + ....+++.+
T Consensus       108 sl~kDl~~~N~~iR~lALRtL~~I~~----~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p-e-~v~~~~~~l  181 (355)
T 3tjz_B          108 SLTKDMTGKEDSYRGPAVRALCQITD----STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF-D-VVKRWVNEA  181 (355)
T ss_dssp             HHHHHHHSSCHHHHHHHHHHHHHHCC----TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH-H-HHHTTHHHH
T ss_pred             HHHhhcCCCcHhHHHHHHHHHhcCCC----HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH-H-HHHHHHHHH
Confidence            33333444445555555554444422    11234445555555555555555555544444433211 1 223455555


Q ss_pred             HHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHH
Q 006898          364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ  443 (626)
Q Consensus       364 ~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~  443 (626)
                      ..++.|.++.|...|+..+..+.+.- ... ...+++.+.+. .-.++......++.+..+...- .......+.+.+..
T Consensus       182 ~~ll~d~n~~V~~~Al~lL~ei~~~d-~~a-~~kLv~~l~~~-~l~~~~~q~~llr~l~~~~~~d-~~~~~~~~~~~l~~  257 (355)
T 3tjz_B          182 QEAASSDNIMVQYHALGLLYHVRKND-RLA-VSKMISKFTRH-GLKSPFAYCMMIRVASRQLEDE-DGSRDSPLFDFIES  257 (355)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHHHTTC-HHH-HHHHHHHHHSS-CCSCHHHHHHHHHHHTCC------------------C
T ss_pred             HHHhcCCCccHHHHHHHHHHHHHhhc-hHH-HHHHHHHHhcC-CCcChHHHHHHHHHHHHhcccc-chhhHHHHHHHHHH
Confidence            55566666666655555555554321 000 11222222110 0112222222333332222110 01223557777888


Q ss_pred             HhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhC
Q 006898          444 WLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINAS  523 (626)
Q Consensus       444 ~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l  523 (626)
                      +++..+..|...|++++-.+... +.. ......+.+..++..+++.+|..++..+..++...+.  .....-..+..++
T Consensus       258 ~L~~~~~aVvyEa~k~I~~l~~~-~~~-~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~--~v~~~n~~ie~li  333 (355)
T 3tjz_B          258 CLRNKHEMVVYEAASAIVNLPGC-SAK-ELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPS--AVTACNLDLENLV  333 (355)
T ss_dssp             CCCCSSHHHHHHHHHHHTC-------------CCCTHHHHHHSSSSSSHHHHHHCC------------------------
T ss_pred             HHcCCChHHHHHHHHHHHhccCC-CHH-HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcH--HHHHHHHHHHHHc
Confidence            88888889999888888776542 211 1223344455567777888888888888887764332  2334555677788


Q ss_pred             CCCCchHHHHHHHHHHH
Q 006898          524 KDRVPNIKFNVAKVLQS  540 (626)
Q Consensus       524 ~d~~~~vR~~a~~~l~~  540 (626)
                      +|++.+++.-|..+|-+
T Consensus       334 ~d~n~sI~t~Aittllk  350 (355)
T 3tjz_B          334 TDANRSIATLAITTLLK  350 (355)
T ss_dssp             -----------------
T ss_pred             cCCcHhHHHHHHHHhhh
Confidence            88888888887777654

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=98.84  E-value=1.8e-07  Score=88.51  Aligned_cols=182  Identities=11%  Similarity=0.059  Sum_probs=124.5

Q ss_pred             HHhcCCChHHHHHHHHHhHHHHHHhhChHH-------HHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHH-----
Q 006898          286 VRLLRDNEAEVRIAAAGKVTKFCRILNPEL-------AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD-----  353 (626)
Q Consensus       286 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-------~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~-----  353 (626)
                      .+.+.+.+|..|..+++.+..+........       ....+.+.+...+.|.|..|...+++++..++..++..     
T Consensus        15 ~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~   94 (278)
T 4ffb_C           15 EERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNA   94 (278)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHH
T ss_pred             HHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence            344555556666666655555444322110       01234556667778888888888888887777654421     


Q ss_pred             ---HHHHhHHHHHH-HhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC
Q 006898          354 ---ATIEQLLPIFL-SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG  429 (626)
Q Consensus       354 ---~~~~~l~~~l~-~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~  429 (626)
                         .....++|.++ +++.|..+.+|..+..++..++...+..   ..+++.+...++++++++|..++.++..+...+|
T Consensus        95 ~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~---~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg  171 (278)
T 4ffb_C           95 HNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI---TQSVELVIPFFEKKLPKLIAAAANCVYELMAAFG  171 (278)
T ss_dssp             HHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS---HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhC
Confidence               12345666655 4688999999999999888877654332   3456777778899999999999999999998887


Q ss_pred             hhh-----HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChH
Q 006898          430 VGF-----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE  470 (626)
Q Consensus       430 ~~~-----~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~  470 (626)
                      ...     ..+.+++.+..++.|++++||.+|..+++.+...+|+.
T Consensus       172 ~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~  217 (278)
T 4ffb_C          172 LTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN  217 (278)
T ss_dssp             TTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred             CCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence            543     23456777888899999999999999999999888864

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=98.80  E-value=1.7e-07  Score=82.20  Aligned_cols=138  Identities=17%  Similarity=0.185  Sum_probs=113.8

Q ss_pred             HhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHH-hcCCCCHHHHHHHHHhHHHHHHhhCccchhhh
Q 006898          124 DWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQ-LCQDDMPMVRRSAASNLGKFAATVEPAHLKTD  202 (626)
Q Consensus       124 ~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~-l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~  202 (626)
                      +.++++...+.+++.+.+|..|+.+++.. .     ...++++.+.. +..|++|.||..++.+++.++...+++    .
T Consensus        70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~-----~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe----~  139 (240)
T 3l9t_A           70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S-----KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK----K  139 (240)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-----TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT----T
T ss_pred             HHHHHHHHHHHhCcchHHHHHHHHHHHhc-c-----CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH----H
Confidence            45778899999999999999999999888 3     12668888887 888999999999999999999755553    3


Q ss_pred             HHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 006898          203 IMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA  271 (626)
Q Consensus       203 ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~  271 (626)
                      .++.+...+.|++..||..|++.+.-.+...........++|++..+..|++..||.+++..|..+++.
T Consensus       140 ~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~  208 (240)
T 3l9t_A          140 ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK  208 (240)
T ss_dssp             THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence            668888999999999999999887554443222344567899999999999999999999999998864

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.71  E-value=1.5e-09  Score=89.83  Aligned_cols=26  Identities=31%  Similarity=0.463  Sum_probs=11.4

Q ss_pred             HHHHHHhcCCChHHHHHHHHHhHHHH
Q 006898          282 VPAYVRLLRDNEAEVRIAAAGKVTKF  307 (626)
Q Consensus       282 ~~~l~~~l~d~~~~vr~~a~~~l~~l  307 (626)
                      ++.+...++|+++.||..++.+|+.+
T Consensus        75 ~~~L~~~L~d~~~~VR~~A~~aL~~~  100 (131)
T 1te4_A           75 VEPLIKLLEDDSGFVRSGAARSLEQI  100 (131)
T ss_dssp             HHHHHHHHHHCCTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            34444444444444444444444443

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6

Probab=98.66  E-value=1.4e-06  Score=95.59  Aligned_cols=388  Identities=10%  Similarity=0.028  Sum_probs=216.9

Q ss_pred             CCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc------cchhhhHHHHHHHhhc-CCchhHHHHHHHHH
Q 006898          154 PSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP------AHLKTDIMSIFEDLTQ-DDQDSVRLLAVEGC  226 (626)
Q Consensus       154 ~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~------~~~~~~ll~~l~~l~~-d~~~~vr~~a~~~l  226 (626)
                      .+.++...+.+.+.+..+..|.+..-.+.+++.++.+......      +..++.+.|.+...+. +-.++....-..++
T Consensus       499 rn~~~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i  578 (997)
T 1vsy_5          499 SGFCELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLA  578 (997)
T ss_dssp             TTTCCCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence            5556667788889999999998888889999999888765432      3466778999999888 45666655555555


Q ss_pred             HHhhcccCchhhhhhhHHHHHHhcC---C---CCHHHHHHHHHHHHHHHHHhCCCc-cccchHHHHHHhcCCChHHHHHH
Q 006898          227 AALGKLLEPQDCVAHILPVIVNFSQ---D---KSWRVRYMVANQLYELCEAVGPEP-TRMDLVPAYVRLLRDNEAEVRIA  299 (626)
Q Consensus       227 ~~l~~~~~~~~~~~~i~~~l~~~~~---d---~~~~vR~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~  299 (626)
                      ..+.....+.. ..-++..+.. +.   +   .+......-...+..+....+-.. ....++..+.  +..+...||+.
T Consensus       579 ~~~~~~~DprR-~~~L~e~l~~-~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~~~~~l~~~~--l~h~y~~VRe~  654 (997)
T 1vsy_5          579 WWLPAVVDLRR-SKTFFCHFIN-ADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPDVGKLFDELV--FDHPYDQVRQA  654 (997)
T ss_dssp             HHHHHHSCGGG-CHHHHHHHTC-CCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCCCHHHHHHCC--SCCSCHHHHHH
T ss_pred             HHHhcCCChhh-hHHHHHHHHH-hhcccCCCCCcHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH--hCCChHHHHHH
Confidence            54444443322 1222222211 11   1   111111111122222222222111 0123333333  45556778887


Q ss_pred             HHHhHHHHHHhhC----------------------------hHHHHH---hhHHHHHHhcc---C--C-----CHHH--H
Q 006898          300 AAGKVTKFCRILN----------------------------PELAIQ---HILPCVKELSS---D--S-----SQHV--R  336 (626)
Q Consensus       300 a~~~l~~l~~~~~----------------------------~~~~~~---~l~~~l~~l~~---d--~-----~~~v--r  336 (626)
                      ....|..+....-                            ++.+.+   .++..+.....   +  +     +...  -
T Consensus       655 Ig~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~  734 (997)
T 1vsy_5          655 VAKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRT  734 (997)
T ss_dssp             HHHHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHH
T ss_pred             HHHHHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHH
Confidence            7777766554321                            011111   11111221111   1  1     1111  2


Q ss_pred             HHHHHHHHhhhhhhcHH---HHHHh-HHHHHHHhhcCCCH-HHHHH-HHHhhHHHHhhhchhhHHhhHHHHHHHHhc-CC
Q 006898          337 SALASVIMGMAPLLGKD---ATIEQ-LLPIFLSLLKDEFP-DVRLN-IISKLDQVNQVIGIDLLSQSLLPAIVELAE-DR  409 (626)
Q Consensus       337 ~~~~~~l~~l~~~~~~~---~~~~~-l~~~l~~~l~d~~~-~vr~~-a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~-~~  409 (626)
                      ..++.++..........   .+... ++|.++.+.++++. ++... +..++..+....-.....+.++..+.+..+ ++
T Consensus       735 kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~  814 (997)
T 1vsy_5          735 STIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALS  814 (997)
T ss_dssp             HHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSC
T ss_pred             HHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCC
Confidence            23333333322211111   11122 55555555555443 44444 444455543332222222445555555555 67


Q ss_pred             ChHHHHHHHHHHHHHHHh----hChhhHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhh
Q 006898          410 HWRVRLAIIEYIPLLASQ----LGVGFFDDKLGALCMQWLQDKV-YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI  484 (626)
Q Consensus       410 ~~~~r~~~~~~l~~l~~~----~~~~~~~~~l~p~l~~~l~d~~-~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l  484 (626)
                      +| .|..++..+..+.-.    ++.+. ...+...+..+|.|+. .+||+.|+.+|+-+....+.......++..+.+.+
T Consensus       815 sW-~R~~~L~~lq~~~f~n~f~l~~~~-~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~  892 (997)
T 1vsy_5          815 SN-QTKLQLAFIQHFLSAELLQLTEEE-KNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGL  892 (997)
T ss_dssp             SS-SHHHHHHHHHHHHHHHTTTSCTTH-HHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSS
T ss_pred             cH-HHHHHHHHHHHHHHHHHHHcCHHH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence            99 999999998776542    13322 2567888999999999 99999999999999876523112234444454443


Q ss_pred             cC------------CChHHHHHHHHHHHHhccccCh----HHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc
Q 006898          485 NN------------PHYLYRMTILRAISLLAPVMGS----EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS  548 (626)
Q Consensus       485 ~~------------~~~~vR~~a~~~l~~i~~~~~~----~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~  548 (626)
                      ..            .+...|.+++-+++.++...+-    ..+.+.++..|.....|+.+ |+..+-++++++.....+.
T Consensus       893 ~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrTH~D~  971 (997)
T 1vsy_5          893 DVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKVRADT  971 (997)
T ss_dssp             TTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHHTSTT
T ss_pred             hhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhccchh
Confidence            22            1225789999999999886653    34778888888888899665 9999999999998876554

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.65  E-value=2.2e-08  Score=82.62  Aligned_cols=116  Identities=16%  Similarity=0.060  Sum_probs=59.9

Q ss_pred             HHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHH
Q 006898          127 IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSI  206 (626)
Q Consensus       127 ~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~  206 (626)
                      .+.+..+++++++.+|..++..++.+...    .    .+.+..+++|+++.||..++.+|+.+..        ...++.
T Consensus        14 ~~~l~~~L~~~~~~vR~~A~~~L~~~~~~----~----~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~~a~~~   77 (131)
T 1te4_A           14 LVPRGSHMADENKWVRRDVSTALSRMGDE----A----FEPLLESLSNEDWRIRGAAAWIIGNFQD--------ERAVEP   77 (131)
T ss_dssp             -------CCSSCCCSSSSCCSSTTSCSST----T----HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhCch----H----HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------HHHHHH
Confidence            34445555556666666666555544321    0    2445555566666666666666655421        233455


Q ss_pred             HHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHH
Q 006898          207 FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLY  266 (626)
Q Consensus       207 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~  266 (626)
                      +...++|+++.||..++.+|+.+.        .+..++.+...++|+++.||..++.+|+
T Consensus        78 L~~~L~d~~~~VR~~A~~aL~~~~--------~~~a~~~L~~~l~d~~~~vr~~A~~aL~  129 (131)
T 1te4_A           78 LIKLLEDDSGFVRSGAARSLEQIG--------GERVRAAMEKLAETGTGFARKVAVNYLE  129 (131)
T ss_dssp             HHHHHHHCCTHHHHHHHHHHHHHC--------SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHhC--------cHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            555556666666666666666554        1234455555555666666666655554

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6

Probab=98.33  E-value=1.3e-05  Score=88.10  Aligned_cols=187  Identities=14%  Similarity=0.098  Sum_probs=114.5

Q ss_pred             hHHHHHHhcCCChH-HHHHH-HHHhHHHHHHhhChHHHHHhhHHHHHHhcc-CCCHHHHHHHHHHHHhhhh----hhcHH
Q 006898          281 LVPAYVRLLRDNEA-EVRIA-AAGKVTKFCRILNPELAIQHILPCVKELSS-DSSQHVRSALASVIMGMAP----LLGKD  353 (626)
Q Consensus       281 l~~~l~~~l~d~~~-~vr~~-a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~-d~~~~vr~~~~~~l~~l~~----~~~~~  353 (626)
                      ++|.++.+.++++. ++... |...+..++...-.....+.++..+.+... +++| .|.+++..+..+.-    .++.+
T Consensus       761 llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~  839 (997)
T 1vsy_5          761 VLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEE  839 (997)
T ss_dssp             TTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTT
T ss_pred             HHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHH
Confidence            56666666666654 55555 445555554433333334556666666565 6899 99999887665432    11222


Q ss_pred             HHHHhHHHHHHHhhcCCC-HHHHHHHHHhhHHHHhhhch-hhHHhhHHHHHHHHhcC------------CChHHHHHHHH
Q 006898          354 ATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGI-DLLSQSLLPAIVELAED------------RHWRVRLAIIE  419 (626)
Q Consensus       354 ~~~~~l~~~l~~~l~d~~-~~vr~~a~~~L~~~~~~~~~-~~~~~~i~~~l~~~~~~------------~~~~~r~~~~~  419 (626)
                      . ...+...+..+|.|+. .+||+.|+.+|+.+....+. ... +.++..+.+....            .+-..|.+++-
T Consensus       840 ~-~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~-~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVL  917 (997)
T 1vsy_5          840 E-KNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPL-LSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVL  917 (997)
T ss_dssp             H-HHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHH-HHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHH
T ss_pred             H-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhH-HHHHHHHHHHHhhcccccccccccchHHHHHHHHHH
Confidence            2 2467888999999999 99999999999999877523 222 2333333333211            11146677777


Q ss_pred             HHHHHHHhhCh----hhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHH
Q 006898          420 YIPLLASQLGV----GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW  471 (626)
Q Consensus       420 ~l~~l~~~~~~----~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~  471 (626)
                      .++++..+++-    ..+.+.++..+-....|+.+ |+..+-++++.+-+...+.|
T Consensus       918 gL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrTH~D~W  972 (997)
T 1vsy_5          918 GLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKVRADTW  972 (997)
T ss_dssp             HHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHHTSTTH
T ss_pred             HHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhccchhH
Confidence            77777776542    23444455555555666443 77777777777777665554

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=98.15  E-value=0.0088  Score=61.21  Aligned_cols=222  Identities=12%  Similarity=0.093  Sum_probs=132.4

Q ss_pred             HHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHH------HHHHHhcCCCCHHHHHHHHHhHHHHHHhhCc-cc
Q 006898          126 YIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELR------SIYTQLCQDDMPMVRRSAASNLGKFAATVEP-AH  198 (626)
Q Consensus       126 l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~------~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~-~~  198 (626)
                      -++.+..+++.+++.+|..+.+++..++.+-+...++-++      +.+..+++|+...+|..++..|..++..... +.
T Consensus       123 ~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQk  202 (651)
T 3grl_A          123 NVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQK  202 (651)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHH
Confidence            5677788888889999999999999998877665555444      6788899999999999999999999875332 11


Q ss_pred             h--hhhHHHHHHHhhcCCch----hHHHHHHHHHHHhhcccCc-hh-h-hhhhHHHHHHhcCC----CCHHHH--HH---
Q 006898          199 L--KTDIMSIFEDLTQDDQD----SVRLLAVEGCAALGKLLEP-QD-C-VAHILPVIVNFSQD----KSWRVR--YM---  260 (626)
Q Consensus       199 ~--~~~ll~~l~~l~~d~~~----~vr~~a~~~l~~l~~~~~~-~~-~-~~~i~~~l~~~~~d----~~~~vR--~~---  260 (626)
                      .  .+..++.+..++..+..    .|..-++..+..+.+.-.. +. + ....+|.+..++..    ..|.-+  ..   
T Consensus       203 lVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~  282 (651)
T 3grl_A          203 IVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHL  282 (651)
T ss_dssp             HHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHH
Confidence            0  11245556666655433    6777888888888876432 11 1 12233333333321    223211  11   


Q ss_pred             HHHHHHHHHHHhCC---------CccccchHHHHHHhcCCC--hHHHHHHHHHhHHHHHHhhChH--HHH----------
Q 006898          261 VANQLYELCEAVGP---------EPTRMDLVPAYVRLLRDN--EAEVRIAAAGKVTKFCRILNPE--LAI----------  317 (626)
Q Consensus       261 a~~~l~~l~~~~~~---------~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~--~~~----------  317 (626)
                      +..++..+...-+.         ......+++.+++++...  ...++..|+.+++.+.......  .+.          
T Consensus       283 ~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~  362 (651)
T 3grl_A          283 MLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPR  362 (651)
T ss_dssp             HHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCE
T ss_pred             HHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCc
Confidence            12222222111111         011234666777765543  4689999999998876532111  111          


Q ss_pred             HhhHHHHHHhccC-CCHHHHHHHHHHHHhhh
Q 006898          318 QHILPCVKELSSD-SSQHVRSALASVIMGMA  347 (626)
Q Consensus       318 ~~l~~~l~~l~~d-~~~~vr~~~~~~l~~l~  347 (626)
                      ..++..+..+..+ ....+|.+++.++..+.
T Consensus       363 p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~  393 (651)
T 3grl_A          363 PAIVVLLMSMVNERQPFVLRCAVLYCFQCFL  393 (651)
T ss_dssp             EHHHHHHHHHTCTTSCHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence            1233334444544 44789999988887765

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.00  E-value=0.015  Score=62.17  Aligned_cols=185  Identities=11%  Similarity=0.012  Sum_probs=103.3

Q ss_pred             hhhhccccccccCCchHHHHHHHHHHhccccccCCcc---hhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhH
Q 006898           46 RKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVE---HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDL  122 (626)
Q Consensus        46 ~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~~---~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~  122 (626)
                      .+.+.|++..+.+++++.|..++.++.+++.-.....   ....+.+++..+++|++.+||.+|+.+|..++..-+++..
T Consensus        33 ~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~  112 (684)
T 4gmo_A           33 EDKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC  112 (684)
T ss_dssp             HHTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             hhhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence            3577888887888889999999999998875211000   1233445678888999999999999999998877655322


Q ss_pred             ----HHhHHHHHHHHhcCC-------------ccc-hh-------HHHhhHhHHhcCCCChH----HHHHHHHHHHHhc-
Q 006898          123 ----VDWYIPLVKRLAAGE-------------WFT-AR-------VSACGLFHIAYPSAPDI----LKTELRSIYTQLC-  172 (626)
Q Consensus       123 ----~~~l~~~l~~l~~~~-------------~~~-~r-------~~a~~~l~~~~~~~~~~----~~~~l~~~l~~l~-  172 (626)
                          ...+++.+..++...             ... .+       ..++.++..++....+.    .....++.+...+ 
T Consensus       113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~  192 (684)
T 4gmo_A          113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI  192 (684)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence                223444443332110             000 11       12333444444332221    1123344444433 


Q ss_pred             --CCCCHHHHHHHHHhHHHHHHhhCc------cchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhc
Q 006898          173 --QDDMPMVRRSAASNLGKFAATVEP------AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGK  231 (626)
Q Consensus       173 --~d~~~~vR~~a~~~l~~l~~~~~~------~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~  231 (626)
                        ......++..++++|..+.+....      +.....+...+..+.++.+. .|..++..+.++..
T Consensus       193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~-~~~la~giL~Ni~~  258 (684)
T 4gmo_A          193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDP-RAVMACGVLHNVFT  258 (684)
T ss_dssp             HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCT-THHHHHHHHHHHHH
T ss_pred             hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcH-HHHHHHHHHHhHhh
Confidence              223468999999999988775321      01111244455555555444 35556666666543

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=97.98  E-value=0.0019  Score=62.92  Aligned_cols=86  Identities=20%  Similarity=0.239  Sum_probs=44.4

Q ss_pred             cchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhH
Q 006898          139 FTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSV  218 (626)
Q Consensus       139 ~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~v  218 (626)
                      ...+..|++.|+.++.+++ +..++-+..++.+|+|++..||..|++.|..++..    .+...+.+.|.++++.+++..
T Consensus        42 ~k~K~LaaQ~I~kffk~FP-~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDvL~QlLqtdd~~E  116 (507)
T 3u0r_A           42 TKEKRLAAQFIPKFFKHFP-ELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADILTQLLQTDDSAE  116 (507)
T ss_dssp             HHHHHHHHHHHHHHGGGCG-GGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHHHHHHTTCCCHHH
T ss_pred             HHHHHHHHHHHHHHHhhCh-hhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHHHHHHHhccchHH
Confidence            4455555555555555553 33444555555555555555665555555555543    334555555555555444444


Q ss_pred             HHHHHHHHHHh
Q 006898          219 RLLAVEGCAAL  229 (626)
Q Consensus       219 r~~a~~~l~~l  229 (626)
                      +...-.+|..+
T Consensus       117 ~~~V~~sL~sl  127 (507)
T 3u0r_A          117 FNLVNNALLSI  127 (507)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            44333444333

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=97.95  E-value=0.012  Score=62.80  Aligned_cols=185  Identities=11%  Similarity=0.072  Sum_probs=105.9

Q ss_pred             hcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhh--HHHh-HHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHH
Q 006898           85 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD--LVDW-YIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILK  161 (626)
Q Consensus        85 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~--~~~~-l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~  161 (626)
                      ..++|++..+ +++++..|..|+.++..++..-....  ..+. +.+++..++.|.+..+|..|+.++..++...+.+..
T Consensus        34 ~~i~Pll~~L-~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~  112 (684)
T 4gmo_A           34 DKILPVLKDL-KSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC  112 (684)
T ss_dssp             HTTHHHHHHH-SSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             hhHHHHHHHc-CCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence            4688888775 56888899999999999986422211  2222 456778888999999999999999998766554322


Q ss_pred             -----HHHHHHHHHhcCC--------------CC-------HHHHHHHHHhHHHHHHhhCc---cchhhhHHHHHHHhhc
Q 006898          162 -----TELRSIYTQLCQD--------------DM-------PMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQ  212 (626)
Q Consensus       162 -----~~l~~~l~~l~~d--------------~~-------~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~l~~  212 (626)
                           ..+++.+..++..              ..       +.+-..++..|..+++.-..   .......++.+...+.
T Consensus       113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~  192 (684)
T 4gmo_A          113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI  192 (684)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence                 2345554444321              01       12223345555555543211   0111234555555543


Q ss_pred             CC---chhHHHHHHHHHHHhhcccCc--hhh----hhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 006898          213 DD---QDSVRLLAVEGCAALGKLLEP--QDC----VAHILPVIVNFSQDKSWRVRYMVANQLYELCEA  271 (626)
Q Consensus       213 d~---~~~vr~~a~~~l~~l~~~~~~--~~~----~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~  271 (626)
                      +.   ..+++..++++|..+.+....  +.+    ...++..+.....+.+. .|..++..+..+...
T Consensus       193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~-~~~la~giL~Ni~~~  259 (684)
T 4gmo_A          193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDP-RAVMACGVLHNVFTS  259 (684)
T ss_dssp             HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCT-THHHHHHHHHHHHHH
T ss_pred             hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcH-HHHHHHHHHHhHhhh
Confidence            22   357999999999988765432  000    11234444444333333 244555555555443

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=97.90  E-value=0.0013  Score=63.94  Aligned_cols=128  Identities=20%  Similarity=0.057  Sum_probs=91.2

Q ss_pred             cchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCH
Q 006898           98 EETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMP  177 (626)
Q Consensus        98 ~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~  177 (626)
                      .++..++.|++-|.+..+.+|.  +.+.-+.....++.|++..+|..|..-+..++..   +....+...|.++++.+++
T Consensus        40 g~~k~K~LaaQ~I~kffk~FP~--l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~---~~i~kiaDvL~QlLqtdd~  114 (507)
T 3u0r_A           40 GGTKEKRLAAQFIPKFFKHFPE--LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG---ENLPRVADILTQLLQTDDS  114 (507)
T ss_dssp             SCHHHHHHHHHHHHHHGGGCGG--GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT---TCHHHHHHHHHHHTTCCCH
T ss_pred             CCHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh---hhhhhHHHHHHHHHhccch
Confidence            4677888888888888888874  4566777778888888888899888888888876   5577888888888888888


Q ss_pred             HHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc
Q 006898          178 MVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP  235 (626)
Q Consensus       178 ~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~  235 (626)
                      ..+..+-++|..+...-+.    ..+-..+.++.+ .++.+|..++..+..-...+++
T Consensus       115 ~E~~~V~~sL~sllk~Dpk----~tl~~lf~~i~~-~~e~~Rer~lkFi~~kl~~l~~  167 (507)
T 3u0r_A          115 AEFNLVNNALLSIFKMDAK----GTLGGLFSQILQ-GEDIVRERAIKFLSTKLKTLPD  167 (507)
T ss_dssp             HHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHH-SCHHHHHHHHHHHHHHGGGSCT
T ss_pred             HHHHHHHHHHHHHHhcChH----HHHHHHHHHHcc-cchHHHHHHHHHHHHHHhhcch
Confidence            8777777777777664322    223333333333 3567888777777654444443

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=97.84  E-value=0.0041  Score=63.57  Aligned_cols=188  Identities=12%  Similarity=0.076  Sum_probs=121.6

Q ss_pred             hHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhH-----HhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh--
Q 006898          358 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL-----SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--  430 (626)
Q Consensus       358 ~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~-----~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~--  430 (626)
                      .-++.++.+|+..+..+|..+++.|..++..-+....     ...-++.|..++.|+...+|..++..+..+.+....  
T Consensus       122 ~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQ  201 (651)
T 3grl_A          122 ENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQ  201 (651)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHH
Confidence            4578899999999999999999999999876544221     124678899999999999999999999999874321  


Q ss_pred             h-hHHHHHHHHHHHHhcCCch----HHHHHHHHHHHHHHHHh--ChHHHh-hhhHHHHHhhhcCC----ChH--HHH---
Q 006898          431 G-FFDDKLGALCMQWLQDKVY----SIRDAAANNLKRLAEEF--GPEWAM-QHITPQVLEMINNP----HYL--YRM---  493 (626)
Q Consensus       431 ~-~~~~~l~p~l~~~l~d~~~----~VR~~a~~~l~~l~~~~--~~~~~~-~~il~~l~~~l~~~----~~~--vR~---  493 (626)
                      + ...+..++.++..+.....    .|-+-+...+..+.+.-  ....+. ...+|.+..++..+    .|.  ...   
T Consensus       202 klVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~  281 (651)
T 3grl_A          202 KIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLH  281 (651)
T ss_dssp             HHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHH
Confidence            1 1112345666666654333    55566666777776542  112222 44667777766532    222  222   


Q ss_pred             HHHHHHHHhccccCh---------HHhhhcHHHHHhhhCCCC--CchHHHHHHHHHHHHHhhh
Q 006898          494 TILRAISLLAPVMGS---------EITCSRLLPVVINASKDR--VPNIKFNVAKVLQSLIPIV  545 (626)
Q Consensus       494 ~a~~~l~~i~~~~~~---------~~~~~~~l~~l~~~l~d~--~~~vR~~a~~~l~~i~~~~  545 (626)
                      .++.++..++..-+.         ..+...+++.+.+++..+  ...+|..|+.+++.++...
T Consensus       282 ~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN  344 (651)
T 3grl_A          282 LMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGC  344 (651)
T ss_dssp             HHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCC
Confidence            255556655543221         123455777777776544  4579999999999987654

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=97.81  E-value=0.0003  Score=63.28  Aligned_cols=147  Identities=16%  Similarity=0.068  Sum_probs=98.5

Q ss_pred             HHHHHHHHhcCCCh--HHHHHHHHHHHHHHHhhC---hhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh---
Q 006898          398 LLPAIVELAEDRHW--RVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---  469 (626)
Q Consensus       398 i~~~l~~~~~~~~~--~~r~~~~~~l~~l~~~~~---~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~---  469 (626)
                      .+|.+.+++.+++.  .++..+...+..++....   ........+|.+..+|.+++..+|..|+++|..++..-..   
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~   88 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL   88 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence            35566666665555  566666666655553221   1122234578899999988999999999999999752111   


Q ss_pred             HHHhhhhHHHHHhhhc-CCChHHHHHHHHHHHHhccccCh-HHhhhcHHHHHhhhCC----------------CCCchHH
Q 006898          470 EWAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGS-EITCSRLLPVVINASK----------------DRVPNIK  531 (626)
Q Consensus       470 ~~~~~~il~~l~~~l~-~~~~~vR~~a~~~l~~i~~~~~~-~~~~~~~l~~l~~~l~----------------d~~~~vR  531 (626)
                      .......+|.+.+++. .++..++..++.++.++...-.. ..+....+|.|..++.                ..++.|+
T Consensus        89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~  168 (233)
T 3tt9_A           89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIF  168 (233)
T ss_dssp             HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHH
T ss_pred             HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHH
Confidence            1223557899999887 57889999999999888754332 2233446777776542                1256899


Q ss_pred             HHHHHHHHHHHhh
Q 006898          532 FNVAKVLQSLIPI  544 (626)
Q Consensus       532 ~~a~~~l~~i~~~  544 (626)
                      .+|..+|..+...
T Consensus       169 ~na~~~L~nLss~  181 (233)
T 3tt9_A          169 YNVTGCLRNMSSA  181 (233)
T ss_dssp             HHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999999764

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=97.79  E-value=0.0011  Score=59.61  Aligned_cols=188  Identities=12%  Similarity=0.026  Sum_probs=93.9

Q ss_pred             cchHHHHHHhcCCChH--HHHHHHHHhHHHHHHhhChH---HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhh-c-
Q 006898          279 MDLVPAYVRLLRDNEA--EVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL-G-  351 (626)
Q Consensus       279 ~~l~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~-~-  351 (626)
                      ...+|.+.++++.+++  +++..++..+..++..-...   ......+|.|.+++.+++..++..++.++..++..- . 
T Consensus         7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n   86 (233)
T 3tt9_A            7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN   86 (233)
T ss_dssp             CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence            3456666677766666  66666666666655432111   122334566666666666666666666666655311 0 


Q ss_pred             HHHH-HHhHHHHHHHhhc-CCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC
Q 006898          352 KDAT-IEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG  429 (626)
Q Consensus       352 ~~~~-~~~l~~~l~~~l~-d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~  429 (626)
                      +... ....+|.+..+|. ..+.++++.++.+|-.+                                       +..-.
T Consensus        87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nL---------------------------------------S~~~~  127 (233)
T 3tt9_A           87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNL---------------------------------------SSNDK  127 (233)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------------------------------HTSGG
T ss_pred             HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHH---------------------------------------HcChh
Confidence            1111 1123444555544 23444554444444444                                       32111


Q ss_pred             -hhhHHHHHHHHHHHHh-------c---------CCchHHHHHHHHHHHHHHHHh--ChHHHh--hhhHHHHHhhhc---
Q 006898          430 -VGFFDDKLGALCMQWL-------Q---------DKVYSIRDAAANNLKRLAEEF--GPEWAM--QHITPQVLEMIN---  485 (626)
Q Consensus       430 -~~~~~~~l~p~l~~~l-------~---------d~~~~VR~~a~~~l~~l~~~~--~~~~~~--~~il~~l~~~l~---  485 (626)
                       ...+...-+|.+..++       .         ..+..|+..|..+|..++..-  ......  ..+++.|..++.   
T Consensus       128 ~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~  207 (233)
T 3tt9_A          128 LKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTI  207 (233)
T ss_dssp             GHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHH
T ss_pred             hHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhh
Confidence             1111111233333221       1         125689999999998886531  111111  235566665543   


Q ss_pred             ---CCChHHHHHHHHHHHHhccc
Q 006898          486 ---NPHYLYRMTILRAISLLAPV  505 (626)
Q Consensus       486 ---~~~~~vR~~a~~~l~~i~~~  505 (626)
                         +.+.+.+..++.++.++...
T Consensus       208 ~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          208 ADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             hcccchhHHHHHHHHHHHHHHhh
Confidence               23567778888888877654

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=97.05  E-value=0.044  Score=61.53  Aligned_cols=158  Identities=9%  Similarity=0.009  Sum_probs=98.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHhCCC--cc----ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHH
Q 006898          253 KSWRVRYMVANQLYELCEAVGPE--PT----RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKE  326 (626)
Q Consensus       253 ~~~~vR~~a~~~l~~l~~~~~~~--~~----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~  326 (626)
                      .++.+|.++.-+++.++......  ..    ...+...+.+.++..+.+-+..++++|+.++.        ...++.+..
T Consensus       407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~--------p~~l~~l~~  478 (1056)
T 1lsh_A          407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--------PNSIKKIQR  478 (1056)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--------GGGHHHHHT
T ss_pred             cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC--------hhHHHHHHH
Confidence            46789999999999988765322  11    22344444444555566777788888888765        233444544


Q ss_pred             hcc-------CCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhh--cCCCHHHHHHHHHhhHHHHhhhchhhHHhh
Q 006898          327 LSS-------DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL--KDEFPDVRLNIISKLDQVNQVIGIDLLSQS  397 (626)
Q Consensus       327 l~~-------d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~  397 (626)
                      ++.       +...++|.+++.+|..+....     ...+-+++.+.+  .+.++++|.+|+..|-...   ++    ..
T Consensus       479 ~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~-----p~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~---P~----~~  546 (1056)
T 1lsh_A          479 FLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-----PRKVQEIVLPIFLNVAIKSELRIRSCIVFFESK---PS----VA  546 (1056)
T ss_dssp             TSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-----HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTC---CC----HH
T ss_pred             hhcCccccccccchHHHHHHHHHHHHhhhhc-----hHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHC---cC----HH
Confidence            432       234689999999988887432     123455666666  4567999999988775432   11    23


Q ss_pred             HHHHHHHHh-cCCChHHHHHHHHHHHHHHHhhCh
Q 006898          398 LLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGV  430 (626)
Q Consensus       398 i~~~l~~~~-~~~~~~~r~~~~~~l~~l~~~~~~  430 (626)
                      .+..+...+ .+++..++......+..+++.-.+
T Consensus       547 ~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P  580 (1056)
T 1lsh_A          547 LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP  580 (1056)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence            444454444 457778877777777776665433

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=96.85  E-value=0.37  Score=46.39  Aligned_cols=236  Identities=16%  Similarity=0.156  Sum_probs=121.1

Q ss_pred             HHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHH
Q 006898          297 RIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRL  376 (626)
Q Consensus       297 r~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~  376 (626)
                      +...+.....+.-.-.+. +.+.++|.+.++..|++..+|+.+++++...+..  .......+++.+..+++|+++.|.+
T Consensus        42 Kl~~L~q~~EL~l~~dps-Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~el~~~~l~~L~~LL~d~d~~V~K  118 (386)
T 3o2t_A           42 KITVLKQVQELIINKDPT-LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIELLLKLIANLNMLLRDENVNVVK  118 (386)
T ss_dssp             HHHHHHHHHHHHHTTCGG-GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTCSSHHHHH
T ss_pred             HHHHHHHHHHHHhccCHH-HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHH
Confidence            444444444433222332 3467777777777777778888777777766542  2223456677777777777787777


Q ss_pred             HHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHH
Q 006898          377 NIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHW-RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDA  455 (626)
Q Consensus       377 ~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~-~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~  455 (626)
                      .++.+...+...         ++..+.   ++++. ....   ..+..+          ..+-..++..+...+..||..
T Consensus       119 ~~I~~~tslYpl---------~f~~i~---~~~~~~~~~e---~~W~~m----------~~lK~~Il~~~ds~n~GVrl~  173 (386)
T 3o2t_A          119 KAILTMTQLYKV---------ALQWMV---KSRVISELQE---ACWDMV----------SAMAGDIILLLDSDNDGIRTH  173 (386)
T ss_dssp             HHHHHHHHHHHH---------HHHHHH---HC-CCCHHHH---HHHHHH----------HHHHHHHHHGGGCSSHHHHHH
T ss_pred             HHHHHHHHHHHH---------HHHHHh---cCCCcchhHH---HHHHHH----------HHHHHHHHHHhccCCcchHHH
Confidence            777776655321         111111   11110 0000   011111          011122333344555666666


Q ss_pred             HHHHHHHHHHHhChH--------------------------------HHhhhhHHHHHhhhcCC--ChHHHHHHHHHHHH
Q 006898          456 AANNLKRLAEEFGPE--------------------------------WAMQHITPQVLEMINNP--HYLYRMTILRAISL  501 (626)
Q Consensus       456 a~~~l~~l~~~~~~~--------------------------------~~~~~il~~l~~~l~~~--~~~vR~~a~~~l~~  501 (626)
                      +++.+..++......                                .-...++..|++.+.++  +...-.+++.+++.
T Consensus       174 aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~  253 (386)
T 3o2t_A          174 AIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLAN  253 (386)
T ss_dssp             HHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHH
Confidence            666666655432100                                01144566666655543  33344566777777


Q ss_pred             hccccChHHhhhcHHHHHhhhCCCC--------CchHHHHHHHHHHHHHhhhccchhhhcccchHHhhhc
Q 006898          502 LAPVMGSEITCSRLLPVVINASKDR--------VPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSFMLYL  563 (626)
Q Consensus       502 i~~~~~~~~~~~~~l~~l~~~l~d~--------~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~l~  563 (626)
                      +++.-  ..+...+++.+..+-.+.        ...||...-..|-.+...-+...+...|...|. .+.
T Consensus       254 Iak~R--P~~~~rIl~aL~~l~~n~p~t~sk~qvkSv~KtLR~~Ll~lLK~p~s~~~~~~I~~~L~-~Lg  320 (386)
T 3o2t_A          254 IARQR--PMFMSEVIQAYETLHANLPPTLAKSQVSSVRKNLKLHLLSVLKHPASLEFQAQITTLLV-DLG  320 (386)
T ss_dssp             HHHHS--GGGHHHHHHHHHHHHHCC----CGGGHHHHHHHHHHHHHHHHTSGGGGGGHHHHHHHHH-HTT
T ss_pred             HHHhc--HHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHH-HHc
Confidence            76532  235667777766542211        123565655566666655444566677777776 543

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=96.76  E-value=0.31  Score=44.18  Aligned_cols=129  Identities=14%  Similarity=0.222  Sum_probs=87.2

Q ss_pred             HHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHH
Q 006898          373 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI  452 (626)
Q Consensus       373 ~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~V  452 (626)
                      +.+...+....++.-.-.+. +..++++.+..+..+++..+|...++++...+..  ........++.+..++.|+++.|
T Consensus        30 ~~kl~~L~qa~el~~~~dp~-ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l~~L~~Ll~d~d~~V  106 (257)
T 3gs3_A           30 STKCELLAKVQETVLGSCAE-LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPHVINVVSMLLRDNSAQV  106 (257)
T ss_dssp             HHHHHHHHHHHHHHTTTTGG-GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHTTCSCHHH
T ss_pred             HHHHHHHHHHHHHHHccCHh-HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHH
Confidence            34555555555543333333 3467777777777778888888888888777633  23445667777888888888888


Q ss_pred             HHHHHHHHHHHHHHh-------Ch-------HH-HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhcc
Q 006898          453 RDAAANNLKRLAEEF-------GP-------EW-AMQHITPQVLEMINNPHYLYRMTILRAISLLAP  504 (626)
Q Consensus       453 R~~a~~~l~~l~~~~-------~~-------~~-~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~  504 (626)
                      .+.+..+.+.+....       +.       -| ....+-..+..+..+.+..+|..++..+..++.
T Consensus       107 ~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl  173 (257)
T 3gs3_A          107 IKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVV  173 (257)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHH
Confidence            888888777776532       11       12 225556667777788899999999999998763

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=96.73  E-value=0.45  Score=45.78  Aligned_cols=113  Identities=13%  Similarity=0.070  Sum_probs=79.0

Q ss_pred             hHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhccc----
Q 006898          158 DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLL----  233 (626)
Q Consensus       158 ~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~----  233 (626)
                      +...+++++.++.+..|++..||+.++..++..+..  ..++...+++.+..++.|+++.|.+.++.+...+....    
T Consensus        58 psLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i  135 (386)
T 3o2t_A           58 PTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWM  135 (386)
T ss_dssp             GGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566777888888888899999998888887753  34556778888888888888888888887776655321    


Q ss_pred             ----Cc----hhhhhh---hHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Q 006898          234 ----EP----QDCVAH---ILPVIVNFSQDKSWRVRYMVANQLYELCEAV  272 (626)
Q Consensus       234 ----~~----~~~~~~---i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~  272 (626)
                          +.    +..|..   +-..+.....+.+..||..+++.+..+.-..
T Consensus       136 ~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~q  185 (386)
T 3o2t_A          136 VKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTL  185 (386)
T ss_dssp             HHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHT
T ss_pred             hcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHh
Confidence                10    122332   2333445567778889999998888776543

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=96.57  E-value=0.14  Score=46.41  Aligned_cols=143  Identities=10%  Similarity=0.100  Sum_probs=90.3

Q ss_pred             hHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHH
Q 006898          142 RVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLL  221 (626)
Q Consensus       142 r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~  221 (626)
                      +.....-..++.-+-.+...+++++.++.+..|++..||+..+..++..+..  +..+....++.+..+++|+++.|.+.
T Consensus        32 kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l~~L~~Ll~d~d~~V~K~  109 (257)
T 3gs3_A           32 KCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPHVINVVSMLLRDNSAQVIKR  109 (257)
T ss_dssp             HHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHTTCSCHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence            3333333333333333456788888888888899999999999999888754  45677788999999999999999999


Q ss_pred             HHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHH
Q 006898          222 AVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAA  301 (626)
Q Consensus       222 a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~  301 (626)
                      ++.+...+.         +.++.++   +.+++..  ...-.+...+.          .+-..++......+..+|..|+
T Consensus       110 ~I~~~~~iY---------~~~l~~i---~~~~~~~--~~~~~~W~~m~----------~lK~~Il~~~~s~n~gvkl~~i  165 (257)
T 3gs3_A          110 VIQACGSIY---------KNGLQYL---CSLMEPG--DSAEQAWNILS----------LIKAQILDMIDNENDGIRTNAI  165 (257)
T ss_dssp             HHHHHHHHH---------HHHHHHH---TTSSSCC--HHHHHHHHHHH----------HHHHHHHHGGGSSCHHHHHHHH
T ss_pred             HHHHHHHHH---------HHHHHHH---hcCCCCc--chHHHHHHHHH----------HHHHHHHHHHccCCcchHHHHH
Confidence            998887654         2222222   2222100  00111222221          2233344555566778888888


Q ss_pred             HhHHHHHHh
Q 006898          302 GKVTKFCRI  310 (626)
Q Consensus       302 ~~l~~l~~~  310 (626)
                      +.+..+.-.
T Consensus       166 KF~e~vIl~  174 (257)
T 3gs3_A          166 KFLEGVVVL  174 (257)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            888877653

>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}

Probab=96.09  E-value=0.31  Score=41.76  Aligned_cols=140  Identities=11%  Similarity=0.091  Sum_probs=91.9

Q ss_pred             HHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhc------CCChHHHHHHHHHHHHHHHh--hChhhHHHHHHHHHHHHh
Q 006898          374 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE------DRHWRVRLAIIEYIPLLASQ--LGVGFFDDKLGALCMQWL  445 (626)
Q Consensus       374 vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~r~~~~~~l~~l~~~--~~~~~~~~~l~p~l~~~l  445 (626)
                      .|.+|+..|..=   -|    .+.++|.+..+..      -.++..-...++...++...  +.-+.+...++|.++.++
T Consensus        24 ~r~~aL~sL~~D---~g----L~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCl   96 (196)
T 4atg_A           24 MKDIAIECLEKE---SG----LQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCV   96 (196)
T ss_dssp             THHHHHHHHHHC---SS----CTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC---CC----hhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHH
Confidence            466666666542   11    1456666655532      23555555556666666543  234455677888888875


Q ss_pred             cC---CchHHHHHHHHHHHHHHHHhChH--HHhhhhHHHHHhhhcCC--ChHHHHHHHHHHHHhccccChHHhhhcHHHH
Q 006898          446 QD---KVYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMGSEITCSRLLPV  518 (626)
Q Consensus       446 ~d---~~~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~l~~~--~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~  518 (626)
                      -.   ....+|..|+..++.++..++..  ....+++..+.+.+.|+  +.....+|+.++..+    |.+.+..-++|.
T Consensus        97 l~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l----G~~~vr~~llP~  172 (196)
T 4atg_A           97 IGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL----SKNVVNTVIREH  172 (196)
T ss_dssp             HCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH----CHHHHHTHHHHH
T ss_pred             HhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh----HHHHHHHhhhcC
Confidence            21   11279999999999999999874  45677888888877775  577888888888876    446555666687


Q ss_pred             HhhhCC
Q 006898          519 VINASK  524 (626)
Q Consensus       519 l~~~l~  524 (626)
                      +..+.+
T Consensus       173 l~~~~~  178 (196)
T 4atg_A          173 AEEYKR  178 (196)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766653

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=96.06  E-value=0.95  Score=42.20  Aligned_cols=206  Identities=12%  Similarity=0.145  Sum_probs=129.1

Q ss_pred             HHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhh-ch-----hhH--HhhHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 006898          354 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GI-----DLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLA  425 (626)
Q Consensus       354 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~-~~-----~~~--~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~  425 (626)
                      .+...++..+...+..-+.+.|+.+...+..+...- |.     +.+  ...++..+....++++...-..      .+.
T Consensus        74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G------~mL  147 (341)
T 1upk_A           74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCG------IML  147 (341)
T ss_dssp             HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHH------HHH
T ss_pred             HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHH------HHH
Confidence            345566777777777777777777777666654321 11     111  1456777777777665322111      111


Q ss_pred             Hh-hChhhHHH-----HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh---HH---HhhhhHHHHHhhhcCCChHHHH
Q 006898          426 SQ-LGVGFFDD-----KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EW---AMQHITPQVLEMINNPHYLYRM  493 (626)
Q Consensus       426 ~~-~~~~~~~~-----~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~---~~---~~~~il~~l~~~l~~~~~~vR~  493 (626)
                      .. ..-+....     ..+..++.+.+.++.+|-.-|..++..+......   ++   ..+.++....+++.++|+-+|.
T Consensus       148 Recir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkR  227 (341)
T 1upk_A          148 RECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKR  227 (341)
T ss_dssp             HHHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHH
T ss_pred             HHHHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHH
Confidence            11 11111111     1222466788899999999898888877654221   11   1256778888899999999999


Q ss_pred             HHHHHHHHhccccChHHh------hhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc--------hhhhcccchHH
Q 006898          494 TILRAISLLAPVMGSEIT------CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--------VSTFSVSPFSF  559 (626)
Q Consensus       494 ~a~~~l~~i~~~~~~~~~------~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~--------~~~~~i~~~l~  559 (626)
                      .++..+|.+.-.-....+      ...-+..++.++.|+..+++..|..++..+.-.-..+        .-.+.++.-|.
T Consensus       228 QSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~  307 (341)
T 1upk_A          228 QSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLS  307 (341)
T ss_dssp             HHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHH
Confidence            999999998753222211      2456778889999999999999999998876432111        12345666666


Q ss_pred             hhhccCC
Q 006898          560 MLYLNVN  566 (626)
Q Consensus       560 ~~l~~d~  566 (626)
                       .+..|.
T Consensus       308 -~f~~d~  313 (341)
T 1upk_A          308 -KFQNDR  313 (341)
T ss_dssp             -HTTTTC
T ss_pred             -hCCCCC
Confidence             666666

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=96.01  E-value=0.12  Score=57.87  Aligned_cols=130  Identities=13%  Similarity=0.041  Sum_probs=77.7

Q ss_pred             HHHHHHHhhcC----CCHHHHHHHHHhhHHHHhhhc------hhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh
Q 006898          359 LLPIFLSLLKD----EFPDVRLNIISKLDQVNQVIG------IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL  428 (626)
Q Consensus       359 l~~~l~~~l~d----~~~~vr~~a~~~L~~~~~~~~------~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~  428 (626)
                      .+..+..++++    .++.+|..++-+++.+....-      +....+.+...+.+.+...+...+..++.+++.+... 
T Consensus       392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p-  470 (1056)
T 1lsh_A          392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP-  470 (1056)
T ss_dssp             HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG-
T ss_pred             HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh-
Confidence            34444555543    457788888888877765431      1122244555555556666777778888888876531 


Q ss_pred             ChhhHHHHHHHHHHHHhc-------CCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcC--CChHHHHHHHHHH
Q 006898          429 GVGFFDDKLGALCMQWLQ-------DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN--PHYLYRMTILRAI  499 (626)
Q Consensus       429 ~~~~~~~~l~p~l~~~l~-------d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~--~~~~vR~~a~~~l  499 (626)
                             ..++.+..++.       +....||.+|+.+|..+....     ...+-+.+.+.+.|  .+..+|.+|+..+
T Consensus       471 -------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~-----p~~v~~il~~i~~n~~e~~EvRiaA~~~L  538 (1056)
T 1lsh_A          471 -------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-----PRKVQEIVLPIFLNVAIKSELRIRSCIVF  538 (1056)
T ss_dssp             -------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-----HHHHHHHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred             -------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc-----hHHHHHHHHHHhcCCCCChHHHHHHHHHH
Confidence                   12334444442       223568888988887776431     23355566666643  5678898888777


Q ss_pred             HH
Q 006898          500 SL  501 (626)
Q Consensus       500 ~~  501 (626)
                      -.
T Consensus       539 m~  540 (1056)
T 1lsh_A          539 FE  540 (1056)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}

Probab=94.11  E-value=2.5  Score=36.19  Aligned_cols=140  Identities=13%  Similarity=0.077  Sum_probs=80.8

Q ss_pred             HHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCC------chhHHHHHHHHHHHhhcc--cCchhhhhhhHHHHHHh
Q 006898          178 MVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD------QDSVRLLAVEGCAALGKL--LEPQDCVAHILPVIVNF  249 (626)
Q Consensus       178 ~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~------~~~vr~~a~~~l~~l~~~--~~~~~~~~~i~~~l~~~  249 (626)
                      ..|+.|.+.|..   .-|    .+.++|.|...+.++      +...-...++...++.+.  +.-+.+...++|.+..+
T Consensus        23 ~~r~~aL~sL~~---D~g----L~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtC   95 (196)
T 4atg_A           23 DMKDIAIECLEK---ESG----LQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTC   95 (196)
T ss_dssp             TTHHHHHHHHHH---CSS----CTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc---CCC----hhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH
Confidence            346665555543   322    344556555444332      233333445555555433  22367788888877654


Q ss_pred             cCC---CCHHHHHHHHHHHHHHHHHhCCC--ccccchHHHHHHhcCCCh--HHHHHHHHHhHHHHHHhhChHHHHHhhHH
Q 006898          250 SQD---KSWRVRYMVANQLYELCEAVGPE--PTRMDLVPAYVRLLRDNE--AEVRIAAAGKVTKFCRILNPELAIQHILP  322 (626)
Q Consensus       250 ~~d---~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~l~~  322 (626)
                      +-.   ....+|..+++.++.++..++..  .....+...+.+.+.|+.  ....-+|+.++..++.    +.+..-++|
T Consensus        96 ll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~----~~vr~~llP  171 (196)
T 4atg_A           96 VIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSK----NVVNTVIRE  171 (196)
T ss_dssp             HHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH----HHHHTHHHH
T ss_pred             HHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHH----HHHHHhhhc
Confidence            311   12279999999999999998863  223456666666666654  5667777777776643    444344457


Q ss_pred             HHHHhc
Q 006898          323 CVKELS  328 (626)
Q Consensus       323 ~l~~l~  328 (626)
                      .+....
T Consensus       172 ~l~~~~  177 (196)
T 4atg_A          172 HAEEYK  177 (196)
T ss_dssp             HHHHHH
T ss_pred             CHHHHH
Confidence            665544

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=89.61  E-value=7  Score=31.46  Aligned_cols=76  Identities=11%  Similarity=0.020  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccch----hhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCch
Q 006898          161 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHL----KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ  236 (626)
Q Consensus       161 ~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~  236 (626)
                      ..+....+.+-+.+.++.+...++..+..++++.|....    ...+++.+..++...++.|+...+..+...+..++.+
T Consensus        40 ~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~  119 (140)
T 3ldz_A           40 PKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKND  119 (140)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence            345555666666777888888888888888887775321    1234444555555556677777777777777666543

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=88.97  E-value=15  Score=34.33  Aligned_cols=207  Identities=9%  Similarity=0.069  Sum_probs=129.6

Q ss_pred             HhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhh-cHH----HH---HHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhh
Q 006898          318 QHILPCVKELSSDSSQHVRSALASVIMGMAPLL-GKD----AT---IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI  389 (626)
Q Consensus       318 ~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~-~~~----~~---~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~  389 (626)
                      +.++..+...+..-++..|..+...+..+...- |..    .+   .+.++..+..+..+++...-.+.  -|.++++.-
T Consensus        77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~--mLRecir~e  154 (341)
T 1upk_A           77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGI--MLRECIRHE  154 (341)
T ss_dssp             HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHH--HHHHHHTSH
T ss_pred             hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHH--HHHHHHHhH
Confidence            556667777667777888888888777765432 111    11   23566777777776654332222  222222210


Q ss_pred             --chhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC---hhhHH---HHHHHHHHHHhcCCchHHHHHHHHHHH
Q 006898          390 --GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFD---DKLGALCMQWLQDKVYSIRDAAANNLK  461 (626)
Q Consensus       390 --~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~---~~~~~---~~l~p~l~~~l~d~~~~VR~~a~~~l~  461 (626)
                        ..-.+....+..+.+..+.++..+-..|...+..+.....   .+++.   +.+...+..++.+++.-.|+.+.+.||
T Consensus       155 ~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLg  234 (341)
T 1upk_A          155 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG  234 (341)
T ss_dssp             HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence              0001112233355567788888888888888877765321   12221   356677788999999999999999999


Q ss_pred             HHHHHhChHH------HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccC-hHHh-------hhcHHHHHhhhCCCC
Q 006898          462 RLAEEFGPEW------AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG-SEIT-------CSRLLPVVINASKDR  526 (626)
Q Consensus       462 ~l~~~~~~~~------~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~-~~~~-------~~~~l~~l~~~l~d~  526 (626)
                      .+.-.=....      ....-+..++.++.|++..++..|.+.+..++..-. +..+       .++++.++..+..|+
T Consensus       235 elLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d~  313 (341)
T 1upk_A          235 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQNDR  313 (341)
T ss_dssp             HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTTTC
T ss_pred             HHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            9975311111      124557788889999999999999999998875321 1111       256777787877777

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=88.81  E-value=4.9  Score=32.41  Aligned_cols=70  Identities=11%  Similarity=0.024  Sum_probs=43.9

Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHH----hhhhHHHHHhhhcCCChHHHHHHHHHHHHhccc
Q 006898          436 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQVLEMINNPHYLYRMTILRAISLLAPV  505 (626)
Q Consensus       436 ~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~  505 (626)
                      ..+..+.+.+..+++.+...|...|..+++..|..+.    ...++..+..+++..+..||..++..+......
T Consensus        42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~  115 (140)
T 3ldz_A           42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDE  115 (140)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence            3445566667777778888888888888777776543    244555555555445556666666666555443

>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17

Probab=88.17  E-value=11  Score=33.10  Aligned_cols=132  Identities=6%  Similarity=-0.043  Sum_probs=88.1

Q ss_pred             HHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCCCccccchHH
Q 006898          205 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRMDLVP  283 (626)
Q Consensus       205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~  283 (626)
                      ..+..+..++.-+.|..|+..+....+...+     ..++.+...+. ..+|.+--..+.+++.+....     +..+.+
T Consensus        58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~-----~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~-----~~~~~~  127 (220)
T 2b6c_A           58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSL-----EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALH-----LTELPT  127 (220)
T ss_dssp             HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCH-----HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHS-----GGGHHH
T ss_pred             HHHHHHHcCchhHHHHHHHHHHHHHHhhCCH-----HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHC-----hHHHHH
Confidence            4555566667778888888888765433322     33445555543 457777776666677665431     344667


Q ss_pred             HHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhh
Q 006898          284 AYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL  350 (626)
Q Consensus       284 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~  350 (626)
                      .+.....+++.-+|+.|+.++-...+.    ...+.+++.+..+..|++..||.+++.+|..+++..
T Consensus       128 ~i~~W~~s~~~w~rR~ai~~~l~~~~~----~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~  190 (220)
T 2b6c_A          128 IFALFYGAENFWNRRVALNLQLMLKEK----TNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTN  190 (220)
T ss_dssp             HHHHHTTCSSHHHHHHHHHTTTTCGGG----CCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhC
Confidence            788888888888888877655322221    122455777777889999999999999999988653

>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17

Probab=87.52  E-value=6.1  Score=34.84  Aligned_cols=130  Identities=10%  Similarity=-0.027  Sum_probs=83.0

Q ss_pred             HHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcC-CCCHHHHHHHHHhHHHHHHhhCccchhhhHHHH
Q 006898          128 PLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSI  206 (626)
Q Consensus       128 ~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~-d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~  206 (626)
                      .++..+..++....|..++.+++.......+    +-++.+...+. -++|.+=...+.+++.+....     ...+.+.
T Consensus        58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~----~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~-----~~~~~~~  128 (220)
T 2b6c_A           58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSL----EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALH-----LTELPTI  128 (220)
T ss_dssp             HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCH----HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHS-----GGGHHHH
T ss_pred             HHHHHHHcCchhHHHHHHHHHHHHHHhhCCH----HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHC-----hHHHHHH
Confidence            4556666767777888888888766544332    23334444443 456777666666566665432     1335567


Q ss_pred             HHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006898          207 FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCE  270 (626)
Q Consensus       207 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~  270 (626)
                      +...+.|++.-+|..|+..+-   .. ..+.....+++.+.....|++..||.+.+.+|..++.
T Consensus       129 i~~W~~s~~~w~rR~ai~~~l---~~-~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k  188 (220)
T 2b6c_A          129 FALFYGAENFWNRRVALNLQL---ML-KEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSK  188 (220)
T ss_dssp             HHHHTTCSSHHHHHHHHHTTT---TC-GGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCCHHHHHHHHHHHH---HH-HHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh
Confidence            778888888877777766442   22 2223345667777778888888888888888777654

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=87.22  E-value=11  Score=30.71  Aligned_cols=72  Identities=10%  Similarity=0.009  Sum_probs=52.4

Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHH----hhhhHHHHHhhhcC------CChHHHHHHHHHHHHhccc
Q 006898          436 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQVLEMINN------PHYLYRMTILRAISLLAPV  505 (626)
Q Consensus       436 ~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~----~~~il~~l~~~l~~------~~~~vR~~a~~~l~~i~~~  505 (626)
                      ..+..+.+-+.++++.+...|...|..+++..|..+.    ...++..+.+++.+      .+..||..++..+......
T Consensus        48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~  127 (149)
T 3g2s_A           48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG  127 (149)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence            3455666777888888988899888888888887643    36677777777653      4567888888888777665


Q ss_pred             cC
Q 006898          506 MG  507 (626)
Q Consensus       506 ~~  507 (626)
                      +.
T Consensus       128 f~  129 (149)
T 3g2s_A          128 LP  129 (149)
T ss_dssp             CT
T ss_pred             hC
Confidence            43

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=86.33  E-value=8  Score=32.07  Aligned_cols=74  Identities=11%  Similarity=0.062  Sum_probs=46.1

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccch----hhhHHHHHHHhhcC-CchhHHHHHHHHHHHhhcccCc
Q 006898          162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHL----KTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEP  235 (626)
Q Consensus       162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~ll~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~  235 (626)
                      .+.+..+.+-+.+.++.+...++..|..+++++|....    ...+++.+..++.. .++.||..++..+......++.
T Consensus        51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~  129 (163)
T 1x5b_A           51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQK  129 (163)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence            34444555666777788888888888888887775211    12344444455543 3467777777777776665554

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=85.68  E-value=13  Score=30.20  Aligned_cols=75  Identities=9%  Similarity=-0.034  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccch----hhhHHHHHHHhhcC------CchhHHHHHHHHHHHhh
Q 006898          161 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHL----KTDIMSIFEDLTQD------DQDSVRLLAVEGCAALG  230 (626)
Q Consensus       161 ~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~ll~~l~~l~~d------~~~~vr~~a~~~l~~l~  230 (626)
                      -.+.+..+.+-+.+.++.+...++..|..++++.|....    ...++..+.+++.+      .++.||...+..+...+
T Consensus        46 pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~  125 (149)
T 3g2s_A           46 PPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT  125 (149)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence            344555666667788899999999999999988876321    23456666666653      35688888888888887


Q ss_pred             cccCc
Q 006898          231 KLLEP  235 (626)
Q Consensus       231 ~~~~~  235 (626)
                      ..++.
T Consensus       126 ~~f~~  130 (149)
T 3g2s_A          126 VGLPE  130 (149)
T ss_dssp             HHCTT
T ss_pred             HHhCC
Confidence            77654

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=85.46  E-value=13  Score=30.12  Aligned_cols=75  Identities=9%  Similarity=-0.056  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccc----hhhhHHHHHHHhhcC------CchhHHHHHHHHHHHhh
Q 006898          161 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH----LKTDIMSIFEDLTQD------DQDSVRLLAVEGCAALG  230 (626)
Q Consensus       161 ~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~ll~~l~~l~~d------~~~~vr~~a~~~l~~l~  230 (626)
                      ..+.+..+.+-+++.++.+...|+..|..++++.|...    ....++..+.+++.+      .+..||..++..+...+
T Consensus        36 ~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~  115 (148)
T 1mhq_A           36 PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT  115 (148)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence            34455566666788899999999999999999888632    123566667777664      35689998888888887


Q ss_pred             cccCc
Q 006898          231 KLLEP  235 (626)
Q Consensus       231 ~~~~~  235 (626)
                      ..++.
T Consensus       116 ~~f~~  120 (148)
T 1mhq_A          116 VWFPE  120 (148)
T ss_dssp             HHCTT
T ss_pred             HHcCC
Confidence            76654

>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*

Probab=84.68  E-value=21  Score=31.66  Aligned_cols=158  Identities=11%  Similarity=0.076  Sum_probs=90.2

Q ss_pred             HHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhc-CCCCHHHHHHH-HHHHHHHHHHhCCCccccchH
Q 006898          205 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS-QDKSWRVRYMV-ANQLYELCEAVGPEPTRMDLV  282 (626)
Q Consensus       205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~-~d~~~~vR~~a-~~~l~~l~~~~~~~~~~~~l~  282 (626)
                      ..+..+.+++..+.|..|+..+....+...++     .++.+..++ ...+|.+--.. ...++.+....     +....
T Consensus        64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~-----~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~-----p~~~~  133 (232)
T 3jxy_A           64 IIIRELWDLPEREFQAAALDIMQKYKKHINET-----HIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKH-----PELIS  133 (232)
T ss_dssp             HHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGG-----GHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHC-----GGGGG
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHccCCChHHHHHhhHHHHHHHHHHC-----HHHHH
Confidence            34555666677778888888876544333332     223333332 35677765544 35566665542     22345


Q ss_pred             HHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHH
Q 006898          283 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI  362 (626)
Q Consensus       283 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~  362 (626)
                      +.+.....|+++-+|+.++..+-.......    ...+.+.+..+..|++..|+.++..+|..++.....     .+.+.
T Consensus       134 ~~l~~W~~s~~~w~rR~ai~~~l~~~~~~d----~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~-----~v~~f  204 (232)
T 3jxy_A          134 AYIPKWIASDNIWLQRAAILFQLKYKQKMD----EELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPD-----VVWEY  204 (232)
T ss_dssp             GTHHHHHHSSCHHHHHHHHHTTTTCGGGCC----HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHH-----HHHHH
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHHhCCC----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHH-----HHHHH
Confidence            566677777787777777665422211111    134556677778899999999999988888765322     22233


Q ss_pred             HHHhhcCCCHHHHHHHHHhhH
Q 006898          363 FLSLLKDEFPDVRLNIISKLD  383 (626)
Q Consensus       363 l~~~l~d~~~~vr~~a~~~L~  383 (626)
                      +...  .-++-.+..|++.|+
T Consensus       205 l~~~--~l~~~~~r~A~k~l~  223 (232)
T 3jxy_A          205 VQNN--ELAPLSKREAIKHIK  223 (232)
T ss_dssp             HHHS--CCCHHHHHHHTTTTH
T ss_pred             HHHC--CCCHHHHHHHHHhcc
Confidence            3322  334555555555554

>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*

Probab=84.49  E-value=19  Score=31.96  Aligned_cols=159  Identities=9%  Similarity=-0.063  Sum_probs=87.3

Q ss_pred             HHHHHHhcCCccchhHHHhhHhHHhcCCCChHHHHHHHHHHHHhcCCCCHHHHHHH-HHhHHHHHHhhCccchhhhHHHH
Q 006898          128 PLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSA-ASNLGKFAATVEPAHLKTDIMSI  206 (626)
Q Consensus       128 ~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vR~~a-~~~l~~l~~~~~~~~~~~~ll~~  206 (626)
                      .++..+..++....|..|+..+........++....+-. +..  ..++|.+=... ...++.+....+     ....+.
T Consensus        64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~~l~~~~~-~l~--~~~nWd~~D~~a~~~~g~~~~~~p-----~~~~~~  135 (232)
T 3jxy_A           64 IIIRELWDLPEREFQAAALDIMQKYKKHINETHIPFLEE-LIV--TKSWWDSVDSIVPTFLGDIFLKHP-----ELISAY  135 (232)
T ss_dssp             HHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGGGHHHHHH-HHT--SSCCHHHHHHHTTTHHHHHHHHCG-----GGGGGT
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHc--cCCChHHHHHhhHHHHHHHHHHCH-----HHHHHH
Confidence            345555566655667777776665444444433333322 222  35667765444 355566655421     124455


Q ss_pred             HHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHH
Q 006898          207 FEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYV  286 (626)
Q Consensus       207 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~  286 (626)
                      +...+.|++.-+|..|+..+-.   .. .......+.+.+.....|++..||.+.+.+|..++..     .++.+.+++.
T Consensus       136 l~~W~~s~~~w~rR~ai~~~l~---~~-~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~-----~p~~v~~fl~  206 (232)
T 3jxy_A          136 IPKWIASDNIWLQRAAILFQLK---YK-QKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKT-----NPDVVWEYVQ  206 (232)
T ss_dssp             HHHHHHSSCHHHHHHHHHTTTT---CG-GGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT-----CHHHHHHHHH
T ss_pred             HHHHhcCCchHHHHHHHHHHHH---HH-hCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh-----CHHHHHHHHH
Confidence            6677888877777777655421   11 1122345666777788888999998888888776643     1234444443


Q ss_pred             HhcCCChHHHHHHHHHhHH
Q 006898          287 RLLRDNEAEVRIAAAGKVT  305 (626)
Q Consensus       287 ~~l~d~~~~vr~~a~~~l~  305 (626)
                      +-  .-++.++..|++.|+
T Consensus       207 ~~--~l~~~~~r~A~k~l~  223 (232)
T 3jxy_A          207 NN--ELAPLSKREAIKHIK  223 (232)
T ss_dssp             HS--CCCHHHHHHHTTTTH
T ss_pred             HC--CCCHHHHHHHHHhcc
Confidence            32  223455555555554

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=82.36  E-value=18  Score=30.19  Aligned_cols=74  Identities=9%  Similarity=-0.027  Sum_probs=53.2

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccch----hhhHHHHHHHhhcC------CchhHHHHHHHHHHHhhc
Q 006898          162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHL----KTDIMSIFEDLTQD------DQDSVRLLAVEGCAALGK  231 (626)
Q Consensus       162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~ll~~l~~l~~d------~~~~vr~~a~~~l~~l~~  231 (626)
                      .+....+.+-+++.++.|...++..|..+++++|....    ...++..+..++..      ....||..++..+...+.
T Consensus        49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  128 (171)
T 1juq_A           49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM  128 (171)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            44555666777888999999999999999988775321    23456666666642      356899999998888887


Q ss_pred             ccCc
Q 006898          232 LLEP  235 (626)
Q Consensus       232 ~~~~  235 (626)
                      .++.
T Consensus       129 ~f~~  132 (171)
T 1juq_A          129 ALPE  132 (171)
T ss_dssp             HCTT
T ss_pred             HcCC
Confidence            7654

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=82.03  E-value=21  Score=29.78  Aligned_cols=95  Identities=7%  Similarity=0.030  Sum_probs=61.4

Q ss_pred             cCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHH----hhhhHHHHHh
Q 006898          407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQVLE  482 (626)
Q Consensus       407 ~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~----~~~il~~l~~  482 (626)
                      .+++|..-...++.+..-     . .-....+..+.+.+..+++.|...|...|..+++..|..+.    ...++..+..
T Consensus        27 ~~~Dw~~ileicD~I~~~-----~-~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~k  100 (171)
T 1juq_A           27 RQEDWEYIIGFCDQINKE-----L-EGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIK  100 (171)
T ss_dssp             SSCCHHHHHHHHHHHHHS-----T-THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHcC-----C-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHH
Confidence            346776544444433321     1 11233455667777888999999999999999888776543    3566777777


Q ss_pred             hhcC------CChHHHHHHHHHHHHhccccC
Q 006898          483 MINN------PHYLYRMTILRAISLLAPVMG  507 (626)
Q Consensus       483 ~l~~------~~~~vR~~a~~~l~~i~~~~~  507 (626)
                      ++..      .+..||..++..+......++
T Consensus       101 l~~~k~~~~~~~~~Vk~kil~li~~W~~~f~  131 (171)
T 1juq_A          101 VVSPKYLGDRVSEKVKTKVIELLYSWTMALP  131 (171)
T ss_dssp             HHCCCCCCTTSCHHHHHHHHHHHHHHHHHCT
T ss_pred             HhccccCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence            6642      356788888888887765443

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=81.37  E-value=20  Score=29.07  Aligned_cols=95  Identities=7%  Similarity=-0.007  Sum_probs=61.3

Q ss_pred             cCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHH----hhhhHHHHHh
Q 006898          407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQVLE  482 (626)
Q Consensus       407 ~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~----~~~il~~l~~  482 (626)
                      .+++|..-...++.+..-     + .-....+..+.+-++.+++.+...|...|..+++..|..+.    ...++..+..
T Consensus        15 ~~~dw~~~leicD~I~~~-----~-~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~k   88 (148)
T 1mhq_A           15 SEQDWSAIQNFCEQVNTD-----P-NGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIK   88 (148)
T ss_dssp             SSCCHHHHHHHHHHHHHS-----S-HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHcC-----C-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHH
Confidence            356776544444433321     1 11233455566677888889999999999888888887642    3667777777


Q ss_pred             hhcC------CChHHHHHHHHHHHHhccccC
Q 006898          483 MINN------PHYLYRMTILRAISLLAPVMG  507 (626)
Q Consensus       483 ~l~~------~~~~vR~~a~~~l~~i~~~~~  507 (626)
                      ++.+      .+..||..++..+......+.
T Consensus        89 l~~~k~~~~~~~~~Vk~kil~li~~W~~~f~  119 (148)
T 1mhq_A           89 VLSPKYLGSWATGKVKGRVIEILFSWTVWFP  119 (148)
T ss_dssp             TTCCSTTSCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred             HHccccCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence            7653      356788888887777765443

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=80.71  E-value=19  Score=31.70  Aligned_cols=75  Identities=13%  Similarity=0.047  Sum_probs=49.0

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccch----hhhHHHHHHHhhcC-CchhHHHHHHHHHHHhhcccCch
Q 006898          162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHL----KTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEPQ  236 (626)
Q Consensus       162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~ll~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~  236 (626)
                      .+.+..+.+-+++.++.+...++..|..++++.|....    ...++..+.++++. .+..|+..++..+...+..+..+
T Consensus        44 k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~  123 (226)
T 3zyq_A           44 KYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRNE  123 (226)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCC
Confidence            44555566666788888888888888888888776311    22344444444433 35578888888777777666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	626
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	1e-119
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	2e-29
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	4e-14
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	6e-13
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	2e-12
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	2e-12
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	3e-10
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	2e-09
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	3e-08
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	5e-10
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	1e-09
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	4e-04
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	1e-09
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	2e-09
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	1e-06
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	2e-09
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	2e-08
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	2e-06
d2bpta1	861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	5e-08
d2bpta1	861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	0.001
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	8e-07
d1qgra_	876	a.118.1.1 (A:) Importin beta {Human (Homo sapiens)	1e-06
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	5e-04
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	0.002

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  364 bits (934), Expect = e-119
 Identities = 331/556 (59%), Positives = 418/556 (75%), Gaps = 4/556 (0%)

Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 6   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 65

Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
           LA+AE+LG F   VGG E+ H LLPPLE+L TVEET VRDKAVESL  I  +   SDL  
Sbjct: 66  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125

Query: 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            ++PLVKRLA G+WFT+R SACGLF + YP     +K ELR  +  LC DD PMVRR+AA
Sbjct: 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 185

Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILP 244
           S LG+FA  +E  ++K++I+ +F +L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct: 186 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 245

Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV
Sbjct: 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 305

Query: 305 TKFCRILNPELA----IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
            +FC  L+ +      +  ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct: 306 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 365

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 366 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 425

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+V
Sbjct: 426 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 485

Query: 481 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 540
           L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct: 486 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 545

Query: 541 LIPIVDQSVSTFSVSP 556
           + PI+D S     V P
Sbjct: 546 IGPILDNSTLQSEVKP 561

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (302), Expect = 2e-29
 Identities = 93/503 (18%), Positives = 189/503 (37%), Gaps = 7/503 (1%)

Query: 6   EPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLL 65
             L P   L      ++  +R  ++  L  I+            +P +      D     
Sbjct: 86  HCLLPP--LESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSR 143

Query: 66  AMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDW 125
             A  L               L      LC+ +   VR  A   L      +   ++   
Sbjct: 144 TSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSE 203

Query: 126 YIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
            IP+   LA+ E      ++     +IA     + L+  +     Q  +D    VR   A
Sbjct: 204 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVA 263

Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVA 240
               +    V P   KTD++  F++L +D +  VR  A        + L         ++
Sbjct: 264 DKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS 323

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
            ILP I     D +  V+  +A+ +  L   +G + T   L+P ++  L+D   EVR+  
Sbjct: 324 QILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNI 383

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 360
              +     ++      Q +LP + EL+ D+   VR A+   +  +A  LG +   E+L 
Sbjct: 384 ISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLN 443

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
            + ++ L D    +R    S L ++ +  G +    +++P ++ ++ D ++  R+  +  
Sbjct: 444 SLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFC 503

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 480
           I +L+   G       +    ++   D V ++R   A +L+++            + P +
Sbjct: 504 INVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPIL 563

Query: 481 LEMINNPHYLYRMTILRAISLLA 503
            ++  +     +     A+++L+
Sbjct: 564 EKLTQDQDVDVKYFAQEALTVLS 586

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.6 bits (179), Expect = 4e-14
 Identities = 56/471 (11%), Positives = 129/471 (27%), Gaps = 30/471 (6%)

Query: 33   LSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLE 92
            +  +   LG +      I      N+      +     +      +         +P L 
Sbjct: 594  ICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILA 653

Query: 93   TLCTVEETCVRDKAVESLCRI---GSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLF 149
            +     +  ++   + +L  +    S    + ++D  +  +  L +         A    
Sbjct: 654  SFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFL 713

Query: 150  HIAYPSAPDILKTELRSIYTQLCQ-----DDMPMVRRSAASNLGKFAATVEPAHLKTDIM 204
                   P  L     SI  +L               +          T        D++
Sbjct: 714  TTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLL 773

Query: 205  SIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNF-----SQDKSWRVRY 259
             +          ++         A       + C      V+  F     +   +  +R 
Sbjct: 774  RMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRL 833

Query: 260  MVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQH 319
            +    L E+   +     +++L    +        EV+ AA+  +            +  
Sbjct: 834  LALLSLGEVGHHIDLS-GQLELKSVILEAFSSPSEEVKSAASYALGSISVG-----NLPE 887

Query: 320  ILPCVKELSSDSSQHVRSALASV--IMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLN 377
             LP V +  +   +     L S+  I+  A ++G    +E +  + L   +      R  
Sbjct: 888  YLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNV 947

Query: 378  IISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD--D 435
            +   L ++  +       ++LLP +           R +++  +    S           
Sbjct: 948  VAECLGKLTLI-----DPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLK 1002

Query: 436  KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN 486
                  ++ L+D   ++R  A       A    P      +   VL  + N
Sbjct: 1003 NCIGDFLKTLEDPDLNVRRVALVTFNSAAHN-KPSLIRDLL-DTVLPHLYN 1051

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.8 bits (169), Expect = 6e-13
 Identities = 48/394 (12%), Positives = 119/394 (30%), Gaps = 23/394 (5%)

Query: 177 PMVRRSAASNLGKFAATVEPAHLKTD---IMSIFEDLTQDDQDSVRLLAVEGCAALGKLL 233
              R  A ++L                  ++ +   L +D    V+ LAV+    L   +
Sbjct: 17  KDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKV 76

Query: 234 EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVR------ 287
             +  V  I+  +         ++R + +  L  +   + P  +   L     +      
Sbjct: 77  -KEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRL 135

Query: 288 ---LLRDNEAEVRIAAAGKVTKFCRILNPELAIQH--ILPCVKELSSDSSQHVRSALASV 342
              + +  +  V++ A   +          L   H  IL C+    +     VR      
Sbjct: 136 TSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIA 195

Query: 343 IMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQ--SLLP 400
           +  +    G    ++ +  +   L K++        I  +  +++  G  +      ++P
Sbjct: 196 LGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIP 255

Query: 401 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAAN 458
            +V+        +R   I+       +           +  +C+++L        D    
Sbjct: 256 LVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDE 315

Query: 459 NLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT--CSRLL 516
           +   +  +          +       ++  +  R    + +  +       +      + 
Sbjct: 316 DENAMDADG--GDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVS 373

Query: 517 PVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVS 550
           P +I+  K+R  N+K +V     SL+       S
Sbjct: 374 PALISRFKEREENVKADVFHAYLSLLKQTRPVQS 407

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.8 bits (164), Expect = 2e-12
 Identities = 58/418 (13%), Positives = 131/418 (31%), Gaps = 33/418 (7%)

Query: 13   VLIDELKNDDIQLRLNSIRRLSTIARALGE-------ERTRKELIPFLSENNDDDDEVLL 65
            +L   L+ +   L+L ++  L  + +   +       +    EL P +SE++    ++ +
Sbjct: 651  ILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAI 710

Query: 66   AMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDW 125
            +    L    P         +L   +  + +         A+    +       ++L   
Sbjct: 711  SFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYM 770

Query: 126  YI------PLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMV 179
             +      P+  +  A     +  S          + P      +      +        
Sbjct: 771  DLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDS 830

Query: 180  RRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCV 239
             R  A               + ++ S+  +      + V+  A     ALG +      +
Sbjct: 831  IRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASY---ALGSIS--VGNL 885

Query: 240  AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEV 296
               LP ++        + +Y++ + L E+  +      +P   ++    ++     E   
Sbjct: 886  PEYLPFVLQEITS-QPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGT 944

Query: 297  RIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--DA 354
            R   A  + K   I    L     LP +K      S + RS++ + +        +  D 
Sbjct: 945  RNVVAECLGKLTLIDPETL-----LPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDP 999

Query: 355  TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLSQSLLPAIVELAEDR 409
             ++  +  FL  L+D   +VR   +   +           DLL   +LP +    + R
Sbjct: 1000 LLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDT-VLPHLYNETKVR 1056

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 57.8 bits (139), Expect = 5e-10
 Identities = 53/301 (17%), Positives = 86/301 (28%), Gaps = 93/301 (30%)

Query: 91  LETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFH 150
           L   CT  + CV  ++   + R                L  +  A  ++  R  A     
Sbjct: 17  LTGRCTPGDACVAVESGRQIDRFFR---------NNPHLAVQYLADPFWERRAIA----- 62

Query: 151 IAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDL 210
               S  + L        T L +D   +VRR+ A  L +                    L
Sbjct: 63  -VRYSPVEAL--------TPLIRDSDEVVRRAVAYRLPR---------------EQLSAL 98

Query: 211 TQDDQDSVRLLAVEGC--AALGKLLEPQD-------CVAHILPVIVNFSQDKSWRVRYMV 261
             D+   VR+   +      L ++   +D               +  F +D+  +VR +V
Sbjct: 99  MFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLV 158

Query: 262 ANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHIL 321
           A +                   +   + +D E EVR   A ++                 
Sbjct: 159 AKR---------------LPEESLGLMTQDPEPEVRRIVASRL---------------RG 188

Query: 322 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISK 381
             + EL  D    VR A                  E      L  L +  P+VRL I  +
Sbjct: 189 DDLLELLHDPDWTVRLAAV----------------EHASLEALRELDEPDPEVRLAIAGR 232

Query: 382 L 382
           L
Sbjct: 233 L 233

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 56.7 bits (136), Expect = 1e-09
 Identities = 34/199 (17%), Positives = 58/199 (29%), Gaps = 53/199 (26%)

Query: 282 VPAYVRLLRDNEAEVRIAAAG-------------KVTKFCRILNPELAIQHILPCVKELS 328
           V A   L+RD++  VR A A              +  +    +   L ++ +        
Sbjct: 68  VEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAA--D 125

Query: 329 SDSSQHVRSALASVIMGMAPLL-------GKDATIEQLLPIFLSLLKDEFPDVRLNIISK 381
            D               +   +        K             + +D  P+VR  + S+
Sbjct: 126 RDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASR 185

Query: 382 LDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC 441
           L                   ++EL  D  W VRLA +E+  L A                
Sbjct: 186 LR---------------GDDLLELLHDPDWTVRLAAVEHASLEA---------------- 214

Query: 442 MQWLQDKVYSIRDAAANNL 460
           ++ L +    +R A A  L
Sbjct: 215 LRELDEPDPEVRLAIAGRL 233

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 39.7 bits (92), Expect = 4e-04
 Identities = 43/266 (16%), Positives = 70/266 (26%), Gaps = 92/266 (34%)

Query: 38  RALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTV 97
           RA+    +  E +  L    D D+ V  A+A  L                   L  L   
Sbjct: 59  RAIAVRYSPVEALTPLI--RDSDEVVRRAVAYRLPR---------------EQLSALMFD 101

Query: 98  EETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP 157
           E+  VR    + L                +  ++++AA   +  R               
Sbjct: 102 EDREVRITVADRLP---------------LEQLEQMAADRDYLVRAYVVQRIPP------ 140

Query: 158 DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDS 217
                       +  +D+   VR+  A  L                      +TQD +  
Sbjct: 141 --------GRLFRFMRDEDRQVRKLVAKRLP---------------EESLGLMTQDPEPE 177

Query: 218 VRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT 277
           VR +                        ++    D  W VR           E    E  
Sbjct: 178 VRRIVASRLRG---------------DDLLELLHDPDWTVRLAAV-------EHASLE-- 213

Query: 278 RMDLVPAYVRLLRDNEAEVRIAAAGK 303
                   +R L + + EVR+A AG+
Sbjct: 214 -------ALRELDEPDPEVRLAIAGR 232

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.9 bits (141), Expect = 1e-09
 Identities = 86/599 (14%), Positives = 178/599 (29%), Gaps = 44/599 (7%)

Query: 14  LIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDE--------VLL 65
            ++ + +    +R      ++TIA     +    +L+P L    D +D          L 
Sbjct: 93  CLNNIGDSSPLIRATVGILITTIASKGELQN-WPDLLPKLCSLLDSEDYNTCEGAFGALQ 151

Query: 66  AMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES--DLV 123
            + E+    +         ++++P            +R  AV  + +      ++    +
Sbjct: 152 KICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHI 211

Query: 124 DWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRS---IYTQLCQDDMPMVR 180
           D +   +  LA  E    R + C    +      D L   + +      Q  QD    V 
Sbjct: 212 DSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVA 271

Query: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240
             A       A       +    +     +  +      +  +     + +     D   
Sbjct: 272 LEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQ 331

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAA 300
            I P           R R +      +  E    +   +D           ++  +R  +
Sbjct: 332 DIRPRFH--------RSRTVAQQHDEDGIEEEDDDDDEID------DDDTISDWNLRKCS 377

Query: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT--IEQ 358
           A  +     +   EL + HILP +KEL       V+ +   V+  +A    +     + +
Sbjct: 378 AAALDVLANVYRDEL-LPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPE 436

Query: 359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLSQSLLPAIVELAEDRHWRVRL 415
           L+P  +  L D+   VR      L +    +     D   + L+  +++   D + RV+ 
Sbjct: 437 LIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQE 496

Query: 416 AIIEYIPLLASQLG---VGFFDDKLGAL--CMQWLQDKVYSIRDAAANNLKR-LAEEFGP 469
           A       L  +     V +    L  L       Q K   I   A   L   +      
Sbjct: 497 AACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNK 556

Query: 470 EWAMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRV 527
              +Q + P +++  N           +L  +S +A  + S        PV         
Sbjct: 557 PEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGF-LPYCEPVYQRCVNLVQ 615

Query: 528 PNIKFNVAKVLQS-LIPIVDQSVSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCL 585
             +   +    Q       D+     ++   S +      N       +    +++ C+
Sbjct: 616 KTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCM 674

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.5 bits (140), Expect = 2e-09
 Identities = 61/447 (13%), Positives = 138/447 (30%), Gaps = 44/447 (9%)

Query: 164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVE---PAHLKTDIMSIFEDLTQDDQDSVRL 220
           L  + T+L  +D P  R  +   L           P  +   I S   +   D    +R 
Sbjct: 48  LIFVLTKLKSEDEP-TRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRA 106

Query: 221 LAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-- 278
                   +    E Q+    +LP + +    + +         L ++CE          
Sbjct: 107 TVGILITTIASKGELQN-WPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDV 165

Query: 279 -----MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQH--ILPCVKELSSDS 331
                  ++P +++  + +  ++R  A   V +F       L +        +  L+ D 
Sbjct: 166 LDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDE 225

Query: 332 SQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 389
              VR  +   ++ +  +        +  ++   L   +D+  +V L        + +  
Sbjct: 226 EPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQP 285

Query: 390 GIDLLSQSLLPAIVELAEDRHWRVRLAII---------EYIPLLASQLGVGFFDDKLGAL 440
               +    LP ++ +  +      + II         E IP     +   F   +  A 
Sbjct: 286 ICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQ 345

Query: 441 CM----------------QWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI 484
                                    +++R  +A  L  LA  +  +  + HI P + E++
Sbjct: 346 QHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVY-RDELLPHILPLLKELL 404

Query: 485 NNPHYLYRMTILRAISLLAPVMGSEIT--CSRLLPVVINASKDRVPNIKFNVAKVLQSLI 542
            +  ++ + + +  +  +A      +      L+P +I    D+   ++      L    
Sbjct: 405 FHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYA 464

Query: 543 PIVDQSVSTFSVSPFSFMLYLNVNNFN 569
             V        + P    L   + + N
Sbjct: 465 HWVVSQPPDTYLKPLMTELLKRILDSN 491

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 1e-06
 Identities = 61/430 (14%), Positives = 130/430 (30%), Gaps = 41/430 (9%)

Query: 3   MVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE------- 55
             DE         D+  +DD  +   ++R+ S  A  +     R EL+P +         
Sbjct: 346 QHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLF 405

Query: 56  NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGS 115
           +++   +    +           G + +   L+P L    + ++  VR     +L R   
Sbjct: 406 HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAH 465

Query: 116 QMRESDLVDWYIPLV-----------KRLAAGEWFTARVSACGLFHIAYPSAPDILKTEL 164
            +       +  PL+           KR+                    P    IL T +
Sbjct: 466 WVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLV 525

Query: 165 RSIYTQLCQDDMPMVRRSAASNLGKFAAT--VEPAHLKTDIMSIFEDLTQDDQDSVRLLA 222
            +      Q    ++   A   L         +P +++  +  + +       +   L  
Sbjct: 526 FAF--SKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFP 583

Query: 223 VEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLV 282
           +  C +          + +  PV           +   + N           E    D +
Sbjct: 584 LLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQY----EAPDKDFM 639

Query: 283 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASV 342
              + LL           +G        +   +A  +IL  + +   D    VR +  ++
Sbjct: 640 IVALDLL-----------SGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFAL 688

Query: 343 IMGMAPLLGKDAT--IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS--QSL 398
           +  +     +     I   +PI  + L  EF  V  N    + +++  +GI++      +
Sbjct: 689 LGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMV 748

Query: 399 LPAIVELAED 408
           L  +VE+   
Sbjct: 749 LHQLVEIINR 758

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 2e-09
 Identities = 35/260 (13%), Positives = 82/260 (31%), Gaps = 10/260 (3%)

Query: 148 LFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIF 207
           L         +  +  +  +  +  Q     VR +A  NL K  +            ++F
Sbjct: 201 LEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALF 260

Query: 208 EDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYE 267
               +  +  +  +A++G      + + +  +A          +      ++     L  
Sbjct: 261 AITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQY 320

Query: 268 LCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKEL 327
           L   +    T+ D          D++      AAG           +  + H+LP +KE 
Sbjct: 321 LVPILTQTLTKQDEND-------DDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEH 373

Query: 328 SSDSSQHVRSALASVIMGMAPLLGKDAT---IEQLLPIFLSLLKDEFPDVRLNIISKLDQ 384
             +     R A       +            + Q +P  + L+KD    VR      + +
Sbjct: 374 IKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGR 433

Query: 385 VNQVIGIDLLSQSLLPAIVE 404
           + +++    ++   L  +++
Sbjct: 434 ICELLPEAAINDVYLAPLLQ 453

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 2e-08
 Identities = 51/378 (13%), Positives = 107/378 (28%), Gaps = 29/378 (7%)

Query: 11  IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDD------EVL 64
           +   + +    +     ++ + ++ IA A        ELIP L  N  + +      E  
Sbjct: 90  VKNYVLQTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKEST 149

Query: 65  LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETC--VRDKAVESLCR----IGSQMR 118
           L     +   I      + ++ +L  +      EE    V+  A  +L        +   
Sbjct: 150 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFD 209

Query: 119 ESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQ----D 174
           +     + + +V           RV+A              ++T +      +       
Sbjct: 210 KESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS 269

Query: 175 DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLE 234
           D+  V                      D+     +  +  +            AL  L+ 
Sbjct: 270 DIDEVALQGIEFWSNVCDEEM------DLAIEASEAAEQGRPPEHTSKFYAKGALQYLVP 323

Query: 235 PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEA 294
               +        + + D         A     L      +     ++P     +++ + 
Sbjct: 324 ----ILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDW 379

Query: 295 EVRIAAA---GKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG 351
             R AA    G + +       +  +   +P + EL  D S  VR   A  +  +  LL 
Sbjct: 380 RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 439

Query: 352 KDATIEQLLPIFLSLLKD 369
           + A  +  L   L  L +
Sbjct: 440 EAAINDVYLAPLLQCLIE 457

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 2e-06
 Identities = 50/410 (12%), Positives = 115/410 (28%), Gaps = 54/410 (13%)

Query: 127 IPLVKRLAAGEWFTARVSA-----CGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRR 181
              V R+AAG      +++        +   + +     + E+++   Q    +      
Sbjct: 48  NSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTE-TYRPS 106

Query: 182 SAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDS--VRLLAVEGCAALGKLLEPQDCV 239
           SA+  +   A    P +   +++        +   +  ++   +E    + + ++P+   
Sbjct: 107 SASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQ 166

Query: 240 AHILPVIVNFSQ-----DKSWRVRYMVANQLYELCEAVGP----EPTRMDLVPAYVRLLR 290
                ++    Q     + S  V+    N L    E        E  R  ++       +
Sbjct: 167 DKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ 226

Query: 291 DNEAEVRIAAAGKVTKFCRILNPELA---IQHILPCVKELSSDSSQHVRSALASVIMGMA 347
             +  VR+AA   + K   +    +       +     E        V          + 
Sbjct: 227 CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVC 286

Query: 348 -----------------------PLLGKDATIEQLLPIFLSL-------LKDEFPDVRLN 377
                                          ++ L+PI             D+  +    
Sbjct: 287 DEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKA 346

Query: 378 IISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL 437
               L  +      D++   L P I E  ++  WR R A +     +            +
Sbjct: 347 AGVCLMLLATCCEDDIVPHVL-PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV 405

Query: 438 GALC---MQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI 484
                  ++ ++D    +RD AA  + R+ E              +L+ +
Sbjct: 406 IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCL 455

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.7 bits (127), Expect = 5e-08
 Identities = 67/611 (10%), Positives = 161/611 (26%), Gaps = 82/611 (13%)

Query: 14  LIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSEN--NDDDDEVLLAMAEEL 71
            +  L + + ++   + + ++ IA          EL+  + +N   +  + V  A    L
Sbjct: 100 ALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLAL 159

Query: 72  GVFIPYVGG-----VEHAHVLLPPL--ETLCTVEETCVRDKAVESLCR----IGSQMRES 120
           G             V  ++ +L  +      T     VR  A+ +L      I + M   
Sbjct: 160 GYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMERE 219

Query: 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLC----QDDM 176
              ++ + +V      E    + +A G            +K  +      L     +   
Sbjct: 220 GERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPN 279

Query: 177 PMVRRSAASNLGKFAATVE------------PAHLKTDIMSIFEDLTQD----------- 213
             V                            P       +S  +D+  +           
Sbjct: 280 DKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNED 339

Query: 214 --DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 271
             D D    ++   C  L         +  +L  +       +WR R         + + 
Sbjct: 340 PEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDG 399

Query: 272 VGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKEL- 327
                        +P+ + L+ D   +V+   A  + +    +   +  Q  LP V +  
Sbjct: 400 PDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQAC 459

Query: 328 --SSDSSQHVRSALASVIMGMAPLLGKDAT---IEQLLPIFLSLLKDEFPDVRLNIISKL 382
                    V +  +  I+ +   L +            +   L+               
Sbjct: 460 LIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARAS 519

Query: 383 DQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG----------- 431
                   ++  + ++      ++     ++   +      L  +               
Sbjct: 520 AFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTV 579

Query: 432 --------------FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQH 475
                           D  +G       +     I D     +  LA   G  +   ++ 
Sbjct: 580 LAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLET 639

Query: 476 ITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT--CSRLLPVVINASKDR--VPNIK 531
            +P +L+ +N       +T +  I+ ++  +  +       ++ V+     +      +K
Sbjct: 640 FSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELK 699

Query: 532 FNVAKVLQSLI 542
             V  V   + 
Sbjct: 700 PAVLSVFGDIA 710

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 0.001
 Identities = 54/389 (13%), Positives = 108/389 (27%), Gaps = 38/389 (9%)

Query: 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD--NEAEV 296
            A    ++ N        +R     QL +L      +           ++L D   + E 
Sbjct: 3   TAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQ-----FAGLSSQVLIDENTKLEG 57

Query: 297 RIAAAGKVTKFCRILNPELAIQHILPCVKELS---------------SDSSQHVRSALAS 341
           RI AA  +       +     Q     + ++S                     + +A A 
Sbjct: 58  RILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQ 117

Query: 342 VIMGMAPLLGKDATIEQLLPIFLSLLKDEFPD-VRLNIISKLDQVNQVIGIDLLSQ---- 396
           +I  +A +        +L+ I +     E P+ V+   +  L  + +       +     
Sbjct: 118 LIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSS 177

Query: 397 -SLLPAIVELAEDRHW--RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW----LQDKV 449
            ++L AIV+ A+       VRLA +  +      +      +      MQ      Q + 
Sbjct: 178 NNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAED 237

Query: 450 YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE 509
             ++ AA   L ++  ++                I              +   + +   E
Sbjct: 238 IEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEE 297

Query: 510 I----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSFMLYLNV 565
           I      ++     + +    + +IK  V  +L  L    +           S    L +
Sbjct: 298 IDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQL 357

Query: 566 NNFNVGFIFAAFPLVLFSCLALNYCHRWW 594
              N G       L            R  
Sbjct: 358 FAQNCGNHILEPVLEFVEQNITADNWRNR 386

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 1e-06
 Identities = 52/368 (14%), Positives = 108/368 (29%), Gaps = 19/368 (5%)

Query: 20  NDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE---NNDDDDEVLLAMAEELGVFIP 76
             +     ++ + ++ IA A        ELIP L     N +  + +  +  E +G    
Sbjct: 100 GTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159

Query: 77  YVGG---VEHAHVLLPPLETLCTVEETCVRDKA------VESLCRIGSQMRESDLVDWYI 127
            +      + ++ +L  +      EE     K       + SL    +   +     + +
Sbjct: 160 DIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIM 219

Query: 128 PLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNL 187
            +V           RV+A              ++T +      +  + M       A   
Sbjct: 220 QVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQG 279

Query: 188 GKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIV 247
            +F + V     + D+     +  +  +            AL  L+         L    
Sbjct: 280 IEFWSNV--CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT---QTLTKQD 334

Query: 248 NFSQDKSWRVRYMVANQLYELCEAVGPE--PTRMDLVPAYVRLLRDNEAEVRIAAAGKVT 305
               D  W         L  L      +  P  +  +  +++       +  + A G + 
Sbjct: 335 ENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCIL 394

Query: 306 KFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLS 365
           +       +  +   +P + EL  D S  VR   A  +  +  LL + A  +  L   L 
Sbjct: 395 EGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQ 454

Query: 366 LLKDEFPD 373
            L +    
Sbjct: 455 CLIEGLSA 462

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 40.2 bits (92), Expect = 5e-04
 Identities = 39/271 (14%), Positives = 80/271 (29%), Gaps = 42/271 (15%)

Query: 170 QLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAAL 229
           +L  D   + R S+A  L              D + +  +   D     R +       L
Sbjct: 26  RLLDDHNSLKRISSARVLQLRG--------GQDAVRLAIEFCSDKNYIRRDIGAF---IL 74

Query: 230 GKLLEPQDCVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRL 288
           G++   + C  ++  ++ N    DKS  VR        + C+          +V      
Sbjct: 75  GQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCK--KNPIYSPKIVEQSQIT 132

Query: 289 LRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP 348
             D    VR A A  ++         L I  +     ++ + ++  +             
Sbjct: 133 AFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDC 192

Query: 349 LL-----------------GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI 391
            +                       +++L +    LK     V  +II    +       
Sbjct: 193 FVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKK--NTVYDDIIEAAGE------- 243

Query: 392 DLLSQSLLPAIVE-LAEDRHWRVRLAIIEYI 421
            L  ++LLP +   L +     +  + I+ +
Sbjct: 244 -LGDKTLLPVLDTMLYKFDDNEIITSAIDKL 273

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 41/350 (11%), Positives = 93/350 (26%), Gaps = 21/350 (6%)

Query: 282 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQH----ILPCVKELSSDSSQHVRS 337
           +P   +LL D +  V   AA  V +  +      AI      +   V+ + + +      
Sbjct: 19  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 78

Query: 338 ALASVIMGMAPLL-GKDATIEQ-LLPIFLSLLKDEFPDVRLNIISKLD---QVNQVIGID 392
             A  +  ++    G  A  +   +P  + +L      V    I+ L       +   + 
Sbjct: 79  CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 138

Query: 393 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS------QLGVGFFDDKLGALCMQWLQ 446
           +     L  +V L    + +      + + +LA        + +     +     M+   
Sbjct: 139 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 198

Query: 447 DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM 506
            +      +    +  +     P          +   + +P        L  +  L+   
Sbjct: 199 YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 258

Query: 507 GSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSFMLYLNVN 566
             +     LL  ++        N+    A +L +L     ++            L   V 
Sbjct: 259 TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 318

Query: 567 NFNVGFIFAAFPLVLFSCLA------LNYCHRWWRKQSVPVWLSSLRIQM 610
                       +     L           +       +PV +  L    
Sbjct: 319 RAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPS 368

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	626
d1b3ua_	588	Constant regulatory domain of protein phosphatase	100.0
d1b3ua_	588	Constant regulatory domain of protein phosphatase	100.0
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.96
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.96
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.95
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.93
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.92
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.92
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.91
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.87
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.87
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.72
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.72
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.63
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.62
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.61
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.6
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.5
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.5
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.19
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	99.16
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.15
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	99.15
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.07
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	98.98
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.91
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.89
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.64
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.6
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	98.07
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	97.5
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	96.3
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	91.85
d2b6ca1	213	Hypothetical protein EF3068 {Enterococcus faecalis	88.65
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	87.17
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	86.37
d2b6ca1	213	Hypothetical protein EF3068 {Enterococcus faecalis	85.85
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	81.14
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	80.77

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-63  Score=528.01  Aligned_cols=580  Identities=58%  Similarity=0.928  Sum_probs=547.7

Q ss_pred             CCCCCCcccHHHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhccccccccCCchHHHHHHHHHHhccccccCCc
Q 006898            2 AMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGV   81 (626)
Q Consensus         2 ~~~~~~~~~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~~~~   81 (626)
                      |.|||+++||+.|++.|+|+|..+|..|++.++.++..+|+++++++++|++.+..+++.+|+..+++.++.+..++|++
T Consensus         3 ~~~~~~~~~i~~l~~~l~~~~~~~R~~a~~~l~~ia~~lg~~~~~~~lip~l~~~~~~~~ev~~~~~~~l~~~~~~~~~~   82 (588)
T d1b3ua_           3 ADGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGP   82 (588)
T ss_dssp             SCTTTSSHHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSG
T ss_pred             CCcCcchhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCh
Confidence            67899999999999999999999999999999999999999999999999999976777789999999999999999999


Q ss_pred             chhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChHHH
Q 006898           82 EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILK  161 (626)
Q Consensus        82 ~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~  161 (626)
                      ++.+.+++.+..++++++..||..|+.++..++...+++.+...+.|++..+.++++...|..++.+++.++...++...
T Consensus        83 ~~~~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~~  162 (588)
T d1b3ua_          83 EYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK  162 (588)
T ss_dssp             GGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHH
T ss_pred             hHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHHH
Confidence            99999999999999999999999999999999999999998899999999999999999999999999999999999899


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhh
Q 006898          162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAH  241 (626)
Q Consensus       162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  241 (626)
                      .++++.+..+++|+++.||+.++.+++.+++..+.+...+.++|.+..+.+|+++.||..++.++..++..++.+.....
T Consensus       163 ~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~  242 (588)
T d1b3ua_         163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEAL  242 (588)
T ss_dssp             HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHHHHHHH
Confidence            99999999999999999999999999999999888888889999999999999999999999999999999988877888


Q ss_pred             hHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChH----HHH
Q 006898          242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAI  317 (626)
Q Consensus       242 i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~  317 (626)
                      ++|.+..+++|++|.||..++++++.++...+.+.....++|.+..+++|+++++|..++.+++.++..++..    ...
T Consensus       243 i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~  322 (588)
T d1b3ua_         243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIM  322 (588)
T ss_dssp             THHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHH
T ss_pred             HHHHHHHhcccccHHHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhH
Confidence            9999999999999999999999999999998877666789999999999999999999999999999877643    345


Q ss_pred             HhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhh
Q 006898          318 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS  397 (626)
Q Consensus       318 ~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~  397 (626)
                      +.++|.+....+|.++.+|..++..+..++..+|.+...+.++|.+...++|++++||..++.+++.+...+|.+...+.
T Consensus       323 ~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~~~~~~  402 (588)
T d1b3ua_         323 SQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQS  402 (588)
T ss_dssp             HTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchhhhhhH
Confidence            78899999999999999999999999999999998888889999999999999999999999999999999998888889


Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhH
Q 006898          398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIT  477 (626)
Q Consensus       398 i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il  477 (626)
                      ++|.+.+..+|++|++|..+++.+..++..+|...+.+.+.|.+..++.|+...||.+|+.+++.++..+|+++....++
T Consensus       403 ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~~~~~~i~  482 (588)
T d1b3ua_         403 LLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATII  482 (588)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTH
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            99999999999999999999999999999999988888999999999999999999999999999999999998888999


Q ss_pred             HHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccchhhhcccch
Q 006898          478 PQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSPF  557 (626)
Q Consensus       478 ~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~  557 (626)
                      |.+.++++++++.+|..++.+++.+.+.++.+.+.+.++|.+..+++|++++||.+++++|+.+...++...+...+.|.
T Consensus       483 ~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~~~~~~i~~~  562 (588)
T d1b3ua_         483 PKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPI  562 (588)
T ss_dssp             HHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcHhHHHHHHHH
Confidence            99999999999999999999999999988888888999999999999999999999999999999998888788889999


Q ss_pred             HHhhhccCCCcccccccccCchhHHHHHHHHHHH
Q 006898          558 SFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCH  591 (626)
Q Consensus       558 l~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~  591 (626)
                      +. ++.+|+|.+||+         +|.+|++.+.
T Consensus       563 l~-~L~~D~d~dVr~---------~A~~al~~l~  586 (588)
T d1b3ua_         563 LE-KLTQDQDVDVKY---------FAQEALTVLS  586 (588)
T ss_dssp             HH-HHTTCSSHHHHH---------HHHHHHHHTT
T ss_pred             HH-HHcCCCCHHHHH---------HHHHHHHHHh
Confidence            99 999999999999         9999998763

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-43  Score=374.32  Aligned_cols=528  Identities=18%  Similarity=0.254  Sum_probs=471.9

Q ss_pred             HHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhcccccc-ccCCchHHHHHHHHHHhccccccCCcchhhcchHHH
Q 006898           13 VLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPL   91 (626)
Q Consensus        13 ~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~~l   91 (626)
                      .|.+.+.+ +.+++..+.+.++++....|.......++|.+.. +.++++.||..++.+++.+....+.......+.|++
T Consensus        53 ~l~~~~~~-~~ev~~~~~~~l~~~~~~~~~~~~~~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~~~~~l~p~i  131 (588)
T d1b3ua_          53 FLTDTIYD-EDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLV  131 (588)
T ss_dssp             HHHHTCCC-CHHHHHHHHHHHTTCSGGGTSGGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHH
T ss_pred             HHHHHhcC-cHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            34444444 4468888888888877766655567788888876 677889999999999999988776666667788999


Q ss_pred             hhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChH-HHHHHHHHHHH
Q 006898           92 ETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELRSIYTQ  170 (626)
Q Consensus        92 ~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~-~~~~l~~~l~~  170 (626)
                      ..+..++....|..|...++.+....++. ....+.+.+.++++|+++.+|..++..++.++...+.+ ....+++.+..
T Consensus       132 ~~L~~~~~~~~r~~a~~ll~~~~~~~~~~-~~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~  210 (588)
T d1b3ua_         132 KRLAGGDWFTSRTSACGLFSVCYPRVSSA-VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSN  210 (588)
T ss_dssp             HHHHTCSSHHHHHHHGGGHHHHTTTSCHH-HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHH
T ss_pred             HHHhcccchHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHH
Confidence            99988888888999998888888777654 44568899999999999999999999999999988765 55789999999


Q ss_pred             hcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhc
Q 006898          171 LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS  250 (626)
Q Consensus       171 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~  250 (626)
                      +++|+++.||..++.+++.++...+.+.....++|.+..+++|+++.||..++++++.++...+.+.....++|.+..++
T Consensus       211 l~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll  290 (588)
T d1b3ua_         211 LASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLM  290 (588)
T ss_dssp             HHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHH
T ss_pred             HhcCCchhhHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHHH
Confidence            99999999999999999999998888777788999999999999999999999999999999888777788999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCCcc----ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHH
Q 006898          251 QDKSWRVRYMVANQLYELCEAVGPEPT----RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKE  326 (626)
Q Consensus       251 ~d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~  326 (626)
                      .|.++.||..++..++.++...+....    .+.++|.+...++|.++.+|..+..++..++..++.+...+.++|.+..
T Consensus       291 ~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~p~l~~  370 (588)
T d1b3ua_         291 KDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLA  370 (588)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHH
T ss_pred             hccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccchhHHHHHHHHHHHH
Confidence            999999999999999999988776532    3578999999999999999999999999999999988777889999999


Q ss_pred             hccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHh
Q 006898          327 LSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA  406 (626)
Q Consensus       327 l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~  406 (626)
                      .++|+++.+|..+...++.+....|.....+.++|.+...++|.++.+|.+++.+++.+...+|.+.+.+.+.+.+...+
T Consensus       371 ~l~d~~~~v~~~~~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l  450 (588)
T d1b3ua_         371 QLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWL  450 (588)
T ss_dssp             HHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGG
T ss_pred             HHHhhhhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHhHHHHHHHHHHhhc
Confidence            99999999999999999999888888777888999999999999999999999999999999998888788999999999


Q ss_pred             cCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcC
Q 006898          407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN  486 (626)
Q Consensus       407 ~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~  486 (626)
                      .|+.|.+|.+++.+++.+++.+|.+...+.++|.+..++.|+++.+|..++.+++.+...++.+...+.++|.+.++++|
T Consensus       451 ~D~~~~VR~~A~~~L~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D  530 (588)
T d1b3ua_         451 VDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGD  530 (588)
T ss_dssp             GCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGC
T ss_pred             cCCchhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999988888899999999999999999999999999999888877788999999999999


Q ss_pred             CChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHH
Q 006898          487 PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI  542 (626)
Q Consensus       487 ~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~  542 (626)
                      +.+.||.+++.+++.+....+.+.+.+.+.|.+.++.+|++.+||..|.+++..+.
T Consensus       531 ~v~nVR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~L~~D~d~dVr~~A~~al~~l~  586 (588)
T d1b3ua_         531 PVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             SCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999988888889999999999999999999999998764

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9.8e-26  Score=259.29  Aligned_cols=570  Identities=13%  Similarity=0.161  Sum_probs=379.2

Q ss_pred             cccHHHHHHHhcCccHHHHHHHHhhHHHHHHhh---ChHhhhhhhcccccc-ccCCchHHHHHHHHHHhccccccCCcch
Q 006898            8 LYPIAVLIDELKNDDIQLRLNSIRRLSTIARAL---GEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEH   83 (626)
Q Consensus         8 ~~~i~~l~~~l~s~d~~~r~~a~~~l~~i~~~~---~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~   83 (626)
                      -|.|+.|+++|.|.|++.|++|+..|.+....-   ..+...+.+++.+.. +.|++++||..|.++++.++.+++. ..
T Consensus         2 ~~~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~-~~   80 (1207)
T d1u6gc_           2 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQ   80 (1207)
T ss_dssp             CHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HH
T ss_pred             chhHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcH-hh
Confidence            478999999999999999999999988774321   122334567777766 6789999999999999999988763 34


Q ss_pred             hhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChh--------hHHHhHHHHHHHHh-cCCccchhHHHhhHhHHhcC
Q 006898           84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES--------DLVDWYIPLVKRLA-AGEWFTARVSACGLFHIAYP  154 (626)
Q Consensus        84 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~--------~~~~~l~~~l~~l~-~~~~~~~r~~a~~~l~~~~~  154 (626)
                      ...+++.+...+.+++..+|..+..++..+...++..        .....+++.+.... +.++..+|..++.+++.+..
T Consensus        81 ~~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~  160 (1207)
T d1u6gc_          81 VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS  160 (1207)
T ss_dssp             HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Confidence            5556666655556778889999999999988877642        12233444444433 44567788888888888777


Q ss_pred             CCCh---HHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHH-HhhcCCchhHHHHHHHHHHHhh
Q 006898          155 SAPD---ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFE-DLTQDDQDSVRLLAVEGCAALG  230 (626)
Q Consensus       155 ~~~~---~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~-~l~~d~~~~vr~~a~~~l~~l~  230 (626)
                      .++.   .....+++.+...++++++.||+.++.+++.++...+.+.+. .+++.+. .+..+..+.+|..++.+++.++
T Consensus       161 ~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~-~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~  239 (1207)
T d1u6gc_         161 RQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFV-DLIEHLLSELSKNDSMSTTRTYIQCIAAIS  239 (1207)
T ss_dssp             HTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CT-THHHHHHHHHHHTCSSCSCTTHHHHHHHHH
T ss_pred             HhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence            6654   356788899999999999999999999999998877664333 3333333 3445556667777778888877


Q ss_pred             cccCc--hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccc--cchHHHHHHh------------------
Q 006898          231 KLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR--MDLVPAYVRL------------------  288 (626)
Q Consensus       231 ~~~~~--~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~--~~l~~~l~~~------------------  288 (626)
                      ...+.  ..+.+.++|.+...+.+.+..+|..+..++..+....+.+...  ..+++.+...                  
T Consensus       240 ~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~  319 (1207)
T d1u6gc_         240 RQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENA  319 (1207)
T ss_dssp             HHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC--------------
T ss_pred             HHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhh
Confidence            76665  3345667787777777777778888888877777665543211  1122211111                  


Q ss_pred             -------------------cCCChHHHHHHHHHhHHHHHHhhChH--HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhh
Q 006898          289 -------------------LRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMA  347 (626)
Q Consensus       289 -------------------l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~  347 (626)
                                         ..|..+.+|..+++++..+....+..  .+.+.+.|.+...+.|.++.||..+..++..+.
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~  399 (1207)
T d1u6gc_         320 MDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLL  399 (1207)
T ss_dssp             ----------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHH
T ss_pred             hhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence                               12344667777777777776544422  233556677766677777777777777666654


Q ss_pred             hhhcH---------------------HHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhc----------------
Q 006898          348 PLLGK---------------------DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG----------------  390 (626)
Q Consensus       348 ~~~~~---------------------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~----------------  390 (626)
                      ...+.                     ....+.+++.+...+++....+|..+...+..+....+                
T Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~~~~~i~~  479 (1207)
T d1u6gc_         400 KQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIF  479 (1207)
T ss_dssp             HHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHH
T ss_pred             HhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhhHhhHHHHHH
Confidence            32210                     01112345555555666666666666666555543322                


Q ss_pred             ---------------------------hhh---HHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh---------h
Q 006898          391 ---------------------------IDL---LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---------G  431 (626)
Q Consensus       391 ---------------------------~~~---~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~---------~  431 (626)
                                                 .+.   +...+.+.+.....++.++++..++..+..+...+++         .
T Consensus       480 ~l~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~al~~~~~l~~~l~~~~~~~~~~~~  559 (1207)
T d1u6gc_         480 SLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDAT  559 (1207)
T ss_dssp             HTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCH
T ss_pred             HHhcccchhHHHHHHHHHHHHHHHhccHHHHHHHHHhhhhhHHHHHccccHHHHHHHHHHHHHHHHHhhhhccchhhhhH
Confidence                                       111   1133445555556777778888877777777765532         1


Q ss_pred             hHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccC
Q 006898          432 FFDDKLGALCMQWLQ--DKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG  507 (626)
Q Consensus       432 ~~~~~l~p~l~~~l~--d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~  507 (626)
                      .+...+.+.+...+.  |.+.++|..+..+++.+....+...  ....+++.+.+.+.+  ...|..++.+++.++....
T Consensus       560 ~~~~~l~~~~~~~l~~~~~~~e~~~~al~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~--~~~r~~a~~~l~~i~~~~~  637 (1207)
T d1u6gc_         560 PYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKN--EITRLTTVKALTLIAGSPL  637 (1207)
T ss_dssp             HHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTS--SSHHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcc--hhhHHHHHHHHHHHHHhcc
Confidence            223445555555553  5667899999999999988776542  234456666655554  4478888888888875433


Q ss_pred             h---HHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc---hhhhcccchHHhhhccCCCcccccccccCchhH
Q 006898          508 S---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---VSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVL  581 (626)
Q Consensus       508 ~---~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~  581 (626)
                      .   ..+...+++.+...+.+.+..+|..++.++..+...++..   .....+++.+. .+..+.|..++.         
T Consensus       638 ~~~~~~~l~~~~~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~-~ll~~~d~~v~~---------  707 (1207)
T d1u6gc_         638 KIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELP-PLISESDMHVSQ---------  707 (1207)
T ss_dssp             CCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCG-GGSCTTCHHHHH---------
T ss_pred             chhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhccccchhHHHhhHHHhhc-cccccccHHHHH---------
Confidence            2   3456778889999999999999999999999998887653   33456777777 888899988888         


Q ss_pred             HHHHHHHHHH
Q 006898          582 FSCLALNYCH  591 (626)
Q Consensus       582 ~a~~al~~~~  591 (626)
                      .+...+..+.
T Consensus       708 ~~l~~l~~l~  717 (1207)
T d1u6gc_         708 MAISFLTTLA  717 (1207)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            6666666554

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.4e-29  Score=276.90  Aligned_cols=583  Identities=16%  Similarity=0.138  Sum_probs=398.0

Q ss_pred             HHHHhcCccHHHHHHHHhhHHHHHHhhC---hHhhhhhhcccccc-ccCCchHHHHHHHHHHhccccccCCcchhhcchH
Q 006898           14 LIDELKNDDIQLRLNSIRRLSTIARALG---EERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP   89 (626)
Q Consensus        14 l~~~l~s~d~~~r~~a~~~l~~i~~~~~---~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~   89 (626)
                      ++..+.+++...|..|...|++......   ++..+..+...+.. +.++++.||..++.+++.++.. ..+..|+.++|
T Consensus        51 ll~~~~~~~~~~R~~A~i~Lkn~i~~~w~~~~~~~~~~Ik~~ll~~l~~~~~~vr~~~~~~i~~i~~~-~~~~~Wpell~  129 (888)
T d1qbkb_          51 VLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASK-GELQNWPDLLP  129 (888)
T ss_dssp             SSTTTSCSTTTHHHHTTGGGGGTHHHHTTCSTTTCCHHHHHHHTTGGGCCCSSTTTTTTTTTHHHHTT-TSSCSSTTTST
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-hCccchHHHHH
Confidence            3334445555566666554443222111   11122233333333 4466777888888888777763 33567889999


Q ss_pred             HHhhhhcCcchHHHHHHHHHHHHHHhhcChh-------hHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCCh---H
Q 006898           90 PLETLCTVEETCVRDKAVESLCRIGSQMRES-------DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD---I  159 (626)
Q Consensus        90 ~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~-------~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~---~  159 (626)
                      .+..++.++++.+|+.|..+++.+++.....       .....++|.+.+...+++..+|..++.++..+....+.   .
T Consensus       130 ~L~~~l~s~~~~~~~~al~~L~~i~e~~~~~~~~~~~~~~~~~ll~~ll~~~~~~~~~vr~~al~~l~~~~~~~~~~~~~  209 (888)
T d1qbkb_         130 KLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALML  209 (888)
T ss_dssp             TTTTSSTGGGSSCSSSSSTTTHHHHGGGHHHHHTC---CCSTTTTHHHHTGGGSSSSCSSSTTTHHHHGGGGCCCSTTCS
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            9888888888888999999999988754331       11233778888888888888999999888887765553   3


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCcc--chhhhHHHHHHHhhcCCchhHHHHHHHH------------
Q 006898          160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQDDQDSVRLLAVEG------------  225 (626)
Q Consensus       160 ~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~l~~d~~~~vr~~a~~~------------  225 (626)
                      ..+.+++.+.....|+++.||+.+++++..+.+..+..  .+...+++.+...+.|+++++|..|++.            
T Consensus       210 ~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~l~~~l~~i~~~~l~~~~~~~e~v~~~a~ef~~~~~e~~~~~~  289 (888)
T d1qbkb_         210 HIDSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKD  289 (888)
T ss_dssp             HHHHCSHHHHTTSSCCCSSSTTHHHHTTTTTSCSCTTTTTTTTTTTTTTTTTTTTSSCHHHHHHHHHHHCCCCSGGGGTT
T ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhhHH
Confidence            55677788888888999999999999988776654431  1222344444444445555555554444            


Q ss_pred             --------------------------------------------------------------------------------
Q 006898          226 --------------------------------------------------------------------------------  225 (626)
Q Consensus       226 --------------------------------------------------------------------------------  225 (626)
                                                                                                      
T Consensus       290 ~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (888)
T d1qbkb_         290 VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTIS  369 (888)
T ss_dssp             TTTTSTTTTTTTTTTSSCCSSTTHHHHTTTSSCCTTSCCCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTS
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhhhh
Confidence                                                                                            


Q ss_pred             -----------HHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC--ccccchHHHHHHhcCCC
Q 006898          226 -----------CAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE--PTRMDLVPAYVRLLRDN  292 (626)
Q Consensus       226 -----------l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~  292 (626)
                                 +..++..++++ ..+.++|.+...+.+++|.+|.+++.++|.+++...+.  .....++|.+...++|+
T Consensus       370 ~~~~r~~a~~~L~~l~~~~~~~-il~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~  448 (888)
T d1qbkb_         370 DWNLRKCSAAALDVLANVYRDE-LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDK  448 (888)
T ss_dssp             CCSSHHHHHHHSTTTTTTCCSS-SHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSS
T ss_pred             hhhHHHHHHHHHhhHhhhhHHH-HHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCC
Confidence                       44333333322 34557778888888999999999999999876533211  12356888888999999


Q ss_pred             hHHHHHHHHHhHHHHHHhhCh---HHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHH--HHHHhHHHHHHHhh
Q 006898          293 EAEVRIAAAGKVTKFCRILNP---ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLL  367 (626)
Q Consensus       293 ~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l  367 (626)
                      ++.||..++.+++++++....   +.+.+.+++.+...+.|++++||.+++.++..+.+..+..  .+.+.+++.+...+
T Consensus       449 ~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l  528 (888)
T d1qbkb_         449 KALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAF  528 (888)
T ss_dssp             CHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence            999999999999988875532   2344667777778888899999999999999888766542  34667888888888


Q ss_pred             cCCCHHHHHHHHHhhHHHHhhhchh----hHHhhHHHHHHHHhcC--CChHHHHHHHHHHHHHHHhhChhhH--H----H
Q 006898          368 KDEFPDVRLNIISKLDQVNQVIGID----LLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGVGFF--D----D  435 (626)
Q Consensus       368 ~d~~~~vr~~a~~~L~~~~~~~~~~----~~~~~i~~~l~~~~~~--~~~~~r~~~~~~l~~l~~~~~~~~~--~----~  435 (626)
                      .+.....+..+..+++.+....+..    .+.+.++|.+.+..+.  .+...+...++.+..++...+....  .    +
T Consensus       529 ~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~  608 (888)
T d1qbkb_         529 SKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQ  608 (888)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHH
Confidence            8888888888888888887665543    2335566666554431  2223344567778777777664321  1    1


Q ss_pred             HHHHHHHHHh-------------cCCchHHHHHHHHHHHHHHHHhChHH----HhhhhHHHHHhhhcCCChHHHHHHHHH
Q 006898          436 KLGALCMQWL-------------QDKVYSIRDAAANNLKRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRA  498 (626)
Q Consensus       436 ~l~p~l~~~l-------------~d~~~~VR~~a~~~l~~l~~~~~~~~----~~~~il~~l~~~l~~~~~~vR~~a~~~  498 (626)
                      .++..+...+             .+.+..+...+..+++.+++.++...    ....+++.+...+.+.++.+|..+..+
T Consensus       609 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~l  688 (888)
T d1qbkb_         609 RCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFAL  688 (888)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHH
Confidence            1222221111             23456677788888999988887642    124578888899999999999999999


Q ss_pred             HHHhccccChH--HhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc--hhhhcccchHHhhhccCCCcc--ccc
Q 006898          499 ISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VSTFSVSPFSFMLYLNVNNFN--VGF  572 (626)
Q Consensus       499 l~~i~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~~l~~d~d~~--vr~  572 (626)
                      ++.++..++..  .+.+.++|.+...++++..+|+.++++++|.++...|..  ++.+.+++.|. +.+++++.+  |+.
T Consensus       689 lgdl~~~~~~~~~~~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~~il~~L~-~il~~~~~~~~v~~  767 (888)
T d1qbkb_         689 LGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLV-EIINRPNTPKTLLE  767 (888)
T ss_dssp             HHHHHHHCGGGTGGGHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSHHHHHHHH-HHHTCTTCCHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH-HHHcCCCccHHHHH
Confidence            99998877654  467789999999999999999999999999999988764  56667888888 777766543  667


Q ss_pred             ccccCchhHHHHHHHHHHHHHhh-------cCCcccccchhhH
Q 006898          573 IFAAFPLVLFSCLALNYCHRWWR-------KQSVPVWLSSLRI  608 (626)
Q Consensus       573 ~~~~~~~~~~a~~al~~~~~~~~-------~~~~~~~~~~~~~  608 (626)
                               +++.+++.+....+       ....+.||+.++-
T Consensus       768 ---------n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~~  801 (888)
T d1qbkb_         768 ---------NTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRN  801 (888)
T ss_dssp             ---------HHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHHTT
T ss_pred             ---------HHHHHHHHHHHHCHHHHHhhHHHHHHHHHHHhcc
Confidence                     88889888754322       2234667766643

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=8.5e-27  Score=259.02  Aligned_cols=558  Identities=16%  Similarity=0.118  Sum_probs=389.7

Q ss_pred             HHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhcccccc-ccCCchHHHHHHHHHHhccccccC-------Ccch
Q 006898           12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVG-------GVEH   83 (626)
Q Consensus        12 ~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~-------~~~~   83 (626)
                      ..++..+.++++.+|..+...++.++...+++ .+++++|.|.+ +.++++.++..+..+++.+....+       ....
T Consensus        91 ~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~-~Wpell~~L~~~l~s~~~~~~~~al~~L~~i~e~~~~~~~~~~~~~~  169 (888)
T d1qbkb_          91 SECLNNIGDSSPLIRATVGILITTIASKGELQ-NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRP  169 (888)
T ss_dssp             HHHTTGGGCCCSSTTTTTTTTTHHHHTTTSSC-SSTTTSTTTTTSSTGGGSSCSSSSSTTTHHHHGGGHHHHHTC---CC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHhCcc-chHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhhHHHHHHH
Confidence            35667788889999999999999998765543 57889999888 444555666666555555433211       1123


Q ss_pred             hhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChh--hHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChH--
Q 006898           84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES--DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--  159 (626)
Q Consensus        84 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~--~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~--  159 (626)
                      .+.++|.+.....++++.+|..|+.++..+....+..  .....+++.+.....+++..+|..++.++..+....++.  
T Consensus       170 ~~~ll~~ll~~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~l~  249 (888)
T d1qbkb_         170 LNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLL  249 (888)
T ss_dssp             STTTTHHHHTGGGSSSSCSSSTTTHHHHGGGGCCCSTTCSHHHHCSHHHHTTSSCCCSSSTTHHHHTTTTTSCSCTTTTT
T ss_pred             HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhHHHHH
Confidence            4557777777777888888888888887766554431  122345566666777777888888888877765543321  


Q ss_pred             -HHHHHHHHHHHhcCCCCHHHH----------------------------------------------------------
Q 006898          160 -LKTELRSIYTQLCQDDMPMVR----------------------------------------------------------  180 (626)
Q Consensus       160 -~~~~l~~~l~~l~~d~~~~vR----------------------------------------------------------  180 (626)
                       +...+++.+.....|++..||                                                          
T Consensus       250 ~~l~~i~~~~l~~~~~~~e~v~~~a~ef~~~~~e~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (888)
T d1qbkb_         250 PHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDS  329 (888)
T ss_dssp             TTTTTTTTTTTTTTTSSCHHHHHHHHHHHCCCCSGGGGTTTTTTSTTTTTTTTTTSSCCSSTTHHHHTTTSSCCTTSCCC
T ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHhhhhhhhhhhhhh
Confidence             222333333333444444444                                                          


Q ss_pred             ---------------------------------------------HHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCc
Q 006898          181 ---------------------------------------------RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQ  215 (626)
Q Consensus       181 ---------------------------------------------~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~  215 (626)
                                                                   +.++.++..++...++ ...+.+++.+.+.+++++
T Consensus       330 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~~-~il~~~l~~l~~~l~s~~  408 (888)
T d1qbkb_         330 EQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRD-ELLPHILPLLKELLFHHE  408 (888)
T ss_dssp             GGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTCCS-SSHHHHHHHHHHTTTSSS
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhhhHH-HHHHHHHHHHHHhhccch
Confidence                                                         4444444444443333 334567888888899999


Q ss_pred             hhHHHHHHHHHHHhhcccCc--hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCc---cccchHHHHHHhcC
Q 006898          216 DSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP---TRMDLVPAYVRLLR  290 (626)
Q Consensus       216 ~~vr~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~  290 (626)
                      |.+|.+|+.+++.+++...+  ..+.+.++|.+...++|+++.||..++.+++.++.......   ....+++.++..+.
T Consensus       409 ~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~  488 (888)
T d1qbkb_         409 WVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRIL  488 (888)
T ss_dssp             HHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHS
T ss_pred             hHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhc
Confidence            99999999999999887654  34567789999999999999999999999999988765432   24568888999999


Q ss_pred             CChHHHHHHHHHhHHHHHHhhChH--HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcH----HHHHHhHHHHHH
Q 006898          291 DNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK----DATIEQLLPIFL  364 (626)
Q Consensus       291 d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~----~~~~~~l~~~l~  364 (626)
                      |+++.||.+|+.++..+.+..+..  .+.+.+++.+...+++.+...+..+.++++.++...+.    ..+.+.++|.+.
T Consensus       489 d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~  568 (888)
T d1qbkb_         489 DSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLI  568 (888)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHH
Confidence            999999999999999999877654  34567777788878888888888888888887765543    345566777766


Q ss_pred             Hhhc---CCCHHHHHHHHHhhHHHHhhhchhhH--HhhHHHHHHHH-----------------hcCCChHHHHHHHHHHH
Q 006898          365 SLLK---DEFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVEL-----------------AEDRHWRVRLAIIEYIP  422 (626)
Q Consensus       365 ~~l~---d~~~~vr~~a~~~L~~~~~~~~~~~~--~~~i~~~l~~~-----------------~~~~~~~~r~~~~~~l~  422 (626)
                      ..+.   +++. .+...+++++.+....+....  ...+++.+.+.                 ....+......++..+.
T Consensus       569 ~~~~~~~~~~~-~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  647 (888)
T d1qbkb_         569 QKWNMLKDEDK-DLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLS  647 (888)
T ss_dssp             HHHTTSCTTCT-THHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHH
T ss_pred             HHHHhcccchH-HHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHH
Confidence            6543   3333 334567777777766654321  11222222111                 12345677778888899


Q ss_pred             HHHHhhChhhHH----HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhhcCCChHHHHHHH
Q 006898          423 LLASQLGVGFFD----DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPHYLYRMTIL  496 (626)
Q Consensus       423 ~l~~~~~~~~~~----~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~~~~~~vR~~a~  496 (626)
                      .+++.++.....    ..+.+.+...++|.++.||+.|..+++.++...+...  ..+.++|.+.+.++++++.++.+++
T Consensus       648 ~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~~~~v~~~a~  727 (888)
T d1qbkb_         648 GLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNAT  727 (888)
T ss_dssp             HHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCGGGHHHHHHHH
T ss_pred             HHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence            999888764321    2478889999999999999999999999998876652  3467888898889999999999999


Q ss_pred             HHHHHhccccChH--HhhhcHHHHHhhhCCCCC--chHHHHHHHHHHHHHhhhccc--hhhhcccchHHhhhccCCCccc
Q 006898          497 RAISLLAPVMGSE--ITCSRLLPVVINASKDRV--PNIKFNVAKVLQSLIPIVDQS--VSTFSVSPFSFMLYLNVNNFNV  570 (626)
Q Consensus       497 ~~l~~i~~~~~~~--~~~~~~l~~l~~~l~d~~--~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~~l~~d~d~~v  570 (626)
                      +++|.++...+.+  .+.+.+++.|...+++++  ..|+.+++.++|++....++.  ++.+.+++.+...+..-.|.+-
T Consensus       728 ~~ig~ia~~~~~~~~py~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~~~~d~~e  807 (888)
T d1qbkb_         728 WAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEE  807 (888)
T ss_dssp             HHHHHHHHHTGGGGGGGSHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHHTTSCCSHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhHHHHHHHHHHHhccCCCcHH
Confidence            9999999887754  356778888888887655  459999999999998877653  3445555544414433233443


Q ss_pred             cc
Q 006898          571 GF  572 (626)
Q Consensus       571 r~  572 (626)
                      +.
T Consensus       808 k~  809 (888)
T d1qbkb_         808 KD  809 (888)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=2.3e-21  Score=214.35  Aligned_cols=576  Identities=13%  Similarity=0.113  Sum_probs=365.3

Q ss_pred             HHHHHHhcCccHHHHHHHHhhHHHHHHhhChHhhhhhhcccccc-ccC-CchHHHHHHHHHHhccccccCCc--chhhcc
Q 006898           12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NND-DDDEVLLAMAEELGVFIPYVGGV--EHAHVL   87 (626)
Q Consensus        12 ~~l~~~l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~~~-~~~~vr~~~~~~l~~~~~~~~~~--~~~~~l   87 (626)
                      ..+++.+.++++.+|..+..+++.++..-.|+..+++++|.|.+ +.+ .+..+|..+..+++.+....+..  ...+.+
T Consensus        98 ~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~  177 (861)
T d2bpta1          98 TNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSS  177 (861)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            45677889999999999999999998876666668899999987 443 35568888888888876544321  122333


Q ss_pred             hHHHh----hhh-cCcchHHHHHHHHHHHHHHhhcCh----hhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCCh
Q 006898           88 LPPLE----TLC-TVEETCVRDKAVESLCRIGSQMRE----SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD  158 (626)
Q Consensus        88 ~~~l~----~l~-~~~~~~vR~~a~~~l~~i~~~~~~----~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~  158 (626)
                      .+++.    .+. .+.+..+|..|..++..+...++.    ......+++.+.....++++.+|..++.++..+....++
T Consensus       178 ~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~  257 (861)
T d2bpta1         178 NNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYT  257 (861)
T ss_dssp             HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            33332    222 345788999999999988776654    233445677777888888888999888888777654443


Q ss_pred             H---HH-HHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHh-----------------------------------------
Q 006898          159 I---LK-TELRSIYTQLCQDDMPMVRRSAASNLGKFAAT-----------------------------------------  193 (626)
Q Consensus       159 ~---~~-~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~-----------------------------------------  193 (626)
                      .   +. +.+...+....++.++.+|..+...+..++..                                         
T Consensus       258 ~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~  337 (861)
T d2bpta1         258 FMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQN  337 (861)
T ss_dssp             GCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            2   22 22333334455666677777776666555432                                         


Q ss_pred             ------------------------hCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc---hhhhhhhHHHH
Q 006898          194 ------------------------VEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP---QDCVAHILPVI  246 (626)
Q Consensus       194 ------------------------~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l  246 (626)
                                              .+. ...+.+.+.+.....++++..|..++.+++.+.+....   ..+.+.+++.+
T Consensus       338 ~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l  416 (861)
T d2bpta1         338 EDPEDDDWNVSMSAGACLQLFAQNCGN-HILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSI  416 (861)
T ss_dssp             CC-CCCCCHHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHHHHHHHhhcch-hhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHH
Confidence                                    111 11222333444445556666677777777666665554   23345566666


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHHHHhCCCcccc----chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChH------HH
Q 006898          247 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM----DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE------LA  316 (626)
Q Consensus       247 ~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~----~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~------~~  316 (626)
                      ...+.|+++.||..++.+++.++...+......    .+++.+.....+ ++.++..+..++..+.......      ..
T Consensus       417 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  495 (861)
T d2bpta1         417 LNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD-HPKVATNCSWTIINLVEQLAEATPSPIYNF  495 (861)
T ss_dssp             HHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHHSSSSSCGGGGG
T ss_pred             HHHhcCcchhhhhHHHHHHHHHHHHhchhhhhHHhhhhhhHHHHhcccc-ChHHHHHHHHHHHHHHHHhhhcccchhhHH
Confidence            777777777777777777777777665433222    233333333333 4556666666666655543321      11


Q ss_pred             HHhhHHHHHHhc--cCCCHHHHHHHHHHHHhhhhhhcHHH--HHHhHHHHH----HHhhcCCC-----------HHHHHH
Q 006898          317 IQHILPCVKELS--SDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIF----LSLLKDEF-----------PDVRLN  377 (626)
Q Consensus       317 ~~~l~~~l~~l~--~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l----~~~l~d~~-----------~~vr~~  377 (626)
                      ...++..+....  .+.+..+|..+..++..+....+...  +...+.+.+    ...+....           ..++..
T Consensus       496 ~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~  575 (861)
T d2bpta1         496 YPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSN  575 (861)
T ss_dssp             HHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence            122233333222  34556788888888887776655432  222333333    33322111           234455


Q ss_pred             HHHhhHHHHhhhchhh--HHhhHHHHHHHHhcC-CChHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHhcCCchHH
Q 006898          378 IISKLDQVNQVIGIDL--LSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSI  452 (626)
Q Consensus       378 a~~~L~~~~~~~~~~~--~~~~i~~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~~~~--~~~~l~p~l~~~l~d~~~~V  452 (626)
                      +...+..+....+...  +.+.+++.+.+.+.+ +++.+|..++.+++.++..+|..+  +.+.++|.+...++|.+..|
T Consensus       576 ~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~l~~~~~~v  655 (861)
T d2bpta1         576 ILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPV  655 (861)
T ss_dssp             HHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHH
T ss_pred             HHHHHHHHHhcchhhHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhCCCCHHH
Confidence            5555666555444322  235667777776654 567899999999999999888654  44779999999999999999


Q ss_pred             HHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhhcCC--ChHHHHHHHHHHHHhccccChH--HhhhcHHHHHhhhCCCC
Q 006898          453 RDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDR  526 (626)
Q Consensus       453 R~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~~~--~~~vR~~a~~~l~~i~~~~~~~--~~~~~~l~~l~~~l~d~  526 (626)
                      |..|+.+++.++...+...  ....+++.+.+.+.++  +..+|..++.+++.++..+|..  .+.+.++|.+.+.+...
T Consensus       656 ~~~a~~~l~~i~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~~~~~~l~~~~~~~  735 (861)
T d2bpta1         656 SITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTK  735 (861)
T ss_dssp             HHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHhHHHhHhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            9999999999998877652  3467888888887765  4679999999999999887765  35678888887766544


Q ss_pred             Cc-----------hHHHHHHHHHHHHHhhhccc-----hhhhcccchHHhhhccCC----CcccccccccCchhHHHHHH
Q 006898          527 VP-----------NIKFNVAKVLQSLIPIVDQS-----VSTFSVSPFSFMLYLNVN----NFNVGFIFAAFPLVLFSCLA  586 (626)
Q Consensus       527 ~~-----------~vR~~a~~~l~~i~~~~~~~-----~~~~~i~~~l~~~l~~d~----d~~vr~~~~~~~~~~~a~~a  586 (626)
                      .+           ++|..++.++..+...++..     ++.+.+++.+. ....|+    +.+++.         .+...
T Consensus       736 ~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~p~~~~i~~~i~-~~~~~~~~~~~~~~~~---------~~~~~  805 (861)
T d2bpta1         736 PENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIA-QVAEDPQLYSEDATSR---------AAVGL  805 (861)
T ss_dssp             CSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHH-HHHHCHHHHTSHHHHH---------HHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-HHHhCCccCCCHHHHH---------HHHHH
Confidence            32           37889999998887765432     33455556666 555554    334444         55556


Q ss_pred             HHHHHHHhhcCCc
Q 006898          587 LNYCHRWWRKQSV  599 (626)
Q Consensus       587 l~~~~~~~~~~~~  599 (626)
                      ++.+....+....
T Consensus       806 i~~l~~~~~~~~~  818 (861)
T d2bpta1         806 IGDIAAMFPDGSI  818 (861)
T ss_dssp             HHHHHHHCTTSTT
T ss_pred             HHHHHHHCcchhH
Confidence            6666655554333

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=6.5e-21  Score=210.68  Aligned_cols=570  Identities=12%  Similarity=0.101  Sum_probs=382.6

Q ss_pred             cHHHHHHH-hcCccHHHHHHHHhhHHHHHHhhChHhhhhhhcccccc-c--cCCchHHHHHHHHHHhccccccCC-----
Q 006898           10 PIAVLIDE-LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-N--NDDDDEVLLAMAEELGVFIPYVGG-----   80 (626)
Q Consensus        10 ~i~~l~~~-l~s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~-~--~~~~~~vr~~~~~~l~~~~~~~~~-----   80 (626)
                      .+..+++. +-|+|++.|..|-+.|..+... ++    ...++.+.+ +  .+.++.+|..++..+.+.......     
T Consensus         5 ~~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~-~~----~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~   79 (861)
T d2bpta1           5 EFAQLLENSILSPDQNIRLTSETQLKKLSND-NF----LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQ   79 (861)
T ss_dssp             HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH-CH----HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc-Cc----hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhh
Confidence            45556655 7899999999999999887442 11    233344444 2  234678999999988876543211     


Q ss_pred             ----------cchhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCC-ccchhHHHhhHh
Q 006898           81 ----------VEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE-WFTARVSACGLF  149 (626)
Q Consensus        81 ----------~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~-~~~~r~~a~~~l  149 (626)
                                ++..+.+-..+...+.++++.+|..++.+++.++..--++..++.++|.+.....++ ....|..+..++
T Consensus        80 ~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~~~~~~~~al~~l  159 (861)
T d2bpta1          80 FAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLAL  159 (861)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHH
T ss_pred             HHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence                      112223333444455678899999999999999876544444567888887777654 455788888888


Q ss_pred             HHhcCCCCh------HHHHHHHHHHHHhc--CCCCHHHHHHHHHhHHHHHHhhCc----cchhhhHHHHHHHhhcCCchh
Q 006898          150 HIAYPSAPD------ILKTELRSIYTQLC--QDDMPMVRRSAASNLGKFAATVEP----AHLKTDIMSIFEDLTQDDQDS  217 (626)
Q Consensus       150 ~~~~~~~~~------~~~~~l~~~l~~l~--~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~ll~~l~~l~~d~~~~  217 (626)
                      +.++...+.      .....++..+...+  .+.+..||..+..++..+....+.    ......+++.+...++++++.
T Consensus       160 ~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  239 (861)
T d2bpta1         160 GYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIE  239 (861)
T ss_dssp             HHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHH
Confidence            887665543      23344555554433  456789999999999988776543    233455777888889999999


Q ss_pred             HHHHHHHHHHHhhcccCc--hhhhhh-hHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh----------CCCc--------
Q 006898          218 VRLLAVEGCAALGKLLEP--QDCVAH-ILPVIVNFSQDKSWRVRYMVANQLYELCEAV----------GPEP--------  276 (626)
Q Consensus       218 vr~~a~~~l~~l~~~~~~--~~~~~~-i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~----------~~~~--------  276 (626)
                      +|..++.++..+++..++  ..+... +.+.......+.++.+|..+...+..++...          ....        
T Consensus       240 ~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (861)
T d2bpta1         240 VQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFAL  319 (861)
T ss_dssp             HHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            999999999999887765  222223 3334456678889999999988887776532          1100        


Q ss_pred             -cccchHHHHHHhcC-------CChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhh
Q 006898          277 -TRMDLVPAYVRLLR-------DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP  348 (626)
Q Consensus       277 -~~~~l~~~l~~~l~-------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~  348 (626)
                       ....++|.+...+.       +.+...+..+..++..+....+... .+.+.+.+.....+.+|..|.+++..++.+..
T Consensus       320 ~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~  398 (861)
T d2bpta1         320 SSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHI-LEPVLEFVEQNITADNWRNREAAVMAFGSIMD  398 (861)
T ss_dssp             HHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhh-hhhhcchhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence             11235555555553       2345788999999999888877654 36677888888899999999999999999987


Q ss_pred             hhcHH---HHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhH----HhhHHHH--------------------
Q 006898          349 LLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPA--------------------  401 (626)
Q Consensus       349 ~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~----~~~i~~~--------------------  401 (626)
                      ..+..   .+.+.+++.+...+.|+++.||..++.+++.+...++....    ...+++.                    
T Consensus       399 ~~~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~  478 (861)
T d2bpta1         399 GPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTII  478 (861)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             hcchhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhchhhhhHHhhhhhhHHHHhccccChHHHHHHHHHHH
Confidence            66543   34567889999999999999999999999988776543210    0111111                    


Q ss_pred             ------------------------HHHHh--cCCChHHHHHHHHHHHHHHHhhChhhH--HHHHHHHHHH----HhcCC-
Q 006898          402 ------------------------IVELA--EDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQ----WLQDK-  448 (626)
Q Consensus       402 ------------------------l~~~~--~~~~~~~r~~~~~~l~~l~~~~~~~~~--~~~l~p~l~~----~l~d~-  448 (626)
                                              +....  .+.++.+|..+..++..++...+....  ...+.+.+..    .+... 
T Consensus       479 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~  558 (861)
T d2bpta1         479 NLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDE  558 (861)
T ss_dssp             HHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCG
T ss_pred             HHHHHhhhcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                                    11111  123455666677777776666554321  1223333222    22111 


Q ss_pred             ----------chHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhhcC-CChHHHHHHHHHHHHhccccChH--Hhhh
Q 006898          449 ----------VYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINN-PHYLYRMTILRAISLLAPVMGSE--ITCS  513 (626)
Q Consensus       449 ----------~~~VR~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~~-~~~~vR~~a~~~l~~i~~~~~~~--~~~~  513 (626)
                                ...++..+..+++.+....+...  ....+++.+.+.+.+ ++..+|..++.+++.++..++.+  .+.+
T Consensus       559 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~  638 (861)
T d2bpta1         559 NQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE  638 (861)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred             hhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence                      12344555556666665544331  235566666666544 56778999999999999887764  4678


Q ss_pred             cHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc--hhhhcccchHHhhhccCC--CcccccccccCchhHHHHHHHHH
Q 006898          514 RLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VSTFSVSPFSFMLYLNVN--NFNVGFIFAAFPLVLFSCLALNY  589 (626)
Q Consensus       514 ~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~~l~~d~--d~~vr~~~~~~~~~~~a~~al~~  589 (626)
                      .++|.+...++|.++.||..|+.+++.+....+..  ++.+.+++.|. +.+.++  +.++|.         .+..+++.
T Consensus       639 ~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~~~~~~~~~i~~~L~-~~l~~~~~~~~~k~---------~~~~~l~~  708 (861)
T d2bpta1         639 TFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLA-QMISNPNARRELKP---------AVLSVFGD  708 (861)
T ss_dssp             HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHH-HHHHCTTCCTTHHH---------HHHHHHHH
T ss_pred             HHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhHhhHHHHHHHHH-HHhCCCCCCHHHHH---------HHHHHHHH
Confidence            89999999999999999999999999999887764  45567777777 555443  467787         67777776


Q ss_pred             HHHHhh
Q 006898          590 CHRWWR  595 (626)
Q Consensus       590 ~~~~~~  595 (626)
                      +....+
T Consensus       709 i~~~~~  714 (861)
T d2bpta1         709 IASNIG  714 (861)
T ss_dssp             HHHHHG
T ss_pred             HHHHHH
Confidence            654444

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.4e-21  Score=224.35  Aligned_cols=504  Identities=13%  Similarity=0.097  Sum_probs=368.1

Q ss_pred             cccCCchHHHHHHHHHHhcccccc---CCcchhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHH
Q 006898           55 ENNDDDDEVLLAMAEELGVFIPYV---GGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVK  131 (626)
Q Consensus        55 ~~~~~~~~vr~~~~~~l~~~~~~~---~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~  131 (626)
                      .+.++|+.+|.++..-|.+....-   .++.....+++.+..+++|++++||..|+++++.+....+++.. ..+++.+.
T Consensus        11 k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~-~~l~~~L~   89 (1207)
T d1u6gc_          11 KMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV-ETIVDTLC   89 (1207)
T ss_dssp             HTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH-HHHHHHHH
T ss_pred             hcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhH-HHHHHHHH
Confidence            367899999999987776544311   12334566888888888999999999999999999999887654 34555555


Q ss_pred             HHhcCCccchhHHHhhHhHHhcCCCC---------hHHHHHHHHHHHHhc-CCCCHHHHHHHHHhHHHHHHhhCc--cch
Q 006898          132 RLAAGEWFTARVSACGLFHIAYPSAP---------DILKTELRSIYTQLC-QDDMPMVRRSAASNLGKFAATVEP--AHL  199 (626)
Q Consensus       132 ~l~~~~~~~~r~~a~~~l~~~~~~~~---------~~~~~~l~~~l~~l~-~d~~~~vR~~a~~~l~~l~~~~~~--~~~  199 (626)
                      ..+.+++...|..+...+..+....+         ......+.+.+.... +.+++.+|..++..++.+...+|.  ..+
T Consensus        90 ~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~  169 (1207)
T d1u6gc_          90 TNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF  169 (1207)
T ss_dssp             HHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTT
T ss_pred             HHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHH
Confidence            55556667778777766655543322         124456666666644 456789999999999999998886  244


Q ss_pred             hhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcc--
Q 006898          200 KTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--  277 (626)
Q Consensus       200 ~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~--  277 (626)
                      ...+++.+...++++++.||..|+.+++.++...+.+.+...+-..+..+..+.++.+|..++.+++.++...|....  
T Consensus       170 ~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  249 (1207)
T d1u6gc_         170 HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEY  249 (1207)
T ss_dssp             HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTS
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHH
Confidence            567888999999999999999999999999998887544444444445556677777888899999999998876532  


Q ss_pred             ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChH--HHHHhhHHHHHH-----------------------------
Q 006898          278 RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKE-----------------------------  326 (626)
Q Consensus       278 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~-----------------------------  326 (626)
                      ...++|.+...++++++++|..++.++..+....+..  .+...+++.+..                             
T Consensus       250 l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~  329 (1207)
T d1u6gc_         250 LEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDD  329 (1207)
T ss_dssp             CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------------
T ss_pred             HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhh
Confidence            3579999999999999999999999999998866532  112222222211                             


Q ss_pred             --------hccCCCHHHHHHHHHHHHhhhhhhcH--HHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchh----
Q 006898          327 --------LSSDSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID----  392 (626)
Q Consensus       327 --------l~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~----  392 (626)
                              ...|.+|.+|.++++++..+....+.  ..+...++|.+...+.|.++.||..+..++..+....+..    
T Consensus       330 ~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~  409 (1207)
T d1u6gc_         330 QGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWL  409 (1207)
T ss_dssp             ------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC----
T ss_pred             hhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhhh
Confidence                    12456799999999999998876654  2345678899999999999999999999998887543211    


Q ss_pred             -----------------hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcCCc--hH
Q 006898          393 -----------------LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKV--YS  451 (626)
Q Consensus       393 -----------------~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~--~~~~~l~p~l~~~l~d~~--~~  451 (626)
                                       .....+++.+.+.+.+.+..+|..++..+..+....+..  .+...+++.+...+.|+.  ..
T Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~~~~~i~~~l~~~~~~~~  489 (1207)
T d1u6gc_         410 CDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSN  489 (1207)
T ss_dssp             --------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHH
T ss_pred             hchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhhHhhHHHHHHHHhcccchhH
Confidence                             112346677777788999999999999999998876542  234567777878887654  46


Q ss_pred             HHHHHHHHHHHHHHHhChHH---HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccCh---------HHhhhcHHHHH
Q 006898          452 IRDAAANNLKRLAEEFGPEW---AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---------EITCSRLLPVV  519 (626)
Q Consensus       452 VR~~a~~~l~~l~~~~~~~~---~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~---------~~~~~~~l~~l  519 (626)
                      +|..+..++..+....+.+.   ....+.+.+...+.++.+.++..++.+++.+...+++         ..+...+++.+
T Consensus       490 ~~~~al~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~al~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~  569 (1207)
T d1u6gc_         490 LKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCT  569 (1207)
T ss_dssp             HHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHhhhhhHHHHHccccHHHHHHHHHHHHHHHHHhhhhccchhhhhHHHHHHHHHHH
Confidence            88899999999988766542   3467788888889999999999999998888764432         23445566666


Q ss_pred             hhhC--CCCCchHHHHHHHHHHHHHhhhccc--hhhhcccchHH
Q 006898          520 INAS--KDRVPNIKFNVAKVLQSLIPIVDQS--VSTFSVSPFSF  559 (626)
Q Consensus       520 ~~~l--~d~~~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~  559 (626)
                      ...+  .|.+.++|..+..+++.+....+..  .....+++.+.
T Consensus       570 ~~~l~~~~~~~e~~~~al~~l~~l~~~~~~~~~~~~~~~l~~l~  613 (1207)
T d1u6gc_         570 IKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFL  613 (1207)
T ss_dssp             HHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHH
T ss_pred             HHHHHhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            6655  4566789999999999998887653  23345555555

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.6e-18  Score=188.92  Aligned_cols=572  Identities=14%  Similarity=0.155  Sum_probs=381.8

Q ss_pred             HHHHHHHhcCcc--HHHHHHHHhhHHHHHHhhChHhh---hhhhcccccc-c--cCCchHHHHHHHHHHhccccccCC--
Q 006898           11 IAVLIDELKNDD--IQLRLNSIRRLSTIARALGEERT---RKELIPFLSE-N--NDDDDEVLLAMAEELGVFIPYVGG--   80 (626)
Q Consensus        11 i~~l~~~l~s~d--~~~r~~a~~~l~~i~~~~~~~~~---~~~l~~~l~~-~--~~~~~~vr~~~~~~l~~~~~~~~~--   80 (626)
                      ++.|++.+.+++  ...|..++.++..+...++++..   .+.+++.+.+ +  .+++.++|..+..++.........  
T Consensus       130 i~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~  209 (876)
T d1qgra_         130 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF  209 (876)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHH
T ss_pred             HHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhh
Confidence            567777776655  67899999999999877765543   3455555555 3  245678999999888776654432  


Q ss_pred             --cchhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChh---hHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCC
Q 006898           81 --VEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES---DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPS  155 (626)
Q Consensus        81 --~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~---~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~  155 (626)
                        ....+.+++.+.....++++.+|..+.+++..+++..+..   ...+.+.+.+.....++...++..+...+..++..
T Consensus       210 ~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  289 (876)
T d1qgra_         210 DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE  289 (876)
T ss_dssp             TSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence              2234556777778888899999999999999999877652   22234556666666666666666666554443320


Q ss_pred             --------------------C----ChHHHHHHHHHHHHhcC-------CCCHHHHHHHHHhHHHHHHhhCccchhhhHH
Q 006898          156 --------------------A----PDILKTELRSIYTQLCQ-------DDMPMVRRSAASNLGKFAATVEPAHLKTDIM  204 (626)
Q Consensus       156 --------------------~----~~~~~~~l~~~l~~l~~-------d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll  204 (626)
                                          .    .......+.+.+...+.       +.++.+|.++..++..++...+. ...+.++
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~  368 (876)
T d1qgra_         290 EMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHVL  368 (876)
T ss_dssp             HHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG-GGHHHHH
T ss_pred             HHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhh-hhhhhhH
Confidence                                0    11234556666665542       34567999999999999988776 4457788


Q ss_pred             HHHHHhhcCCchhHHHHHHHHHHHhhcccCc---hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCcc----
Q 006898          205 SIFEDLTQDDQDSVRLLAVEGCAALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT----  277 (626)
Q Consensus       205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~----  277 (626)
                      +.+.+.+.+++|..|.+++..++.+.+....   ..+...+++.+...+.|+++.||..++.+++.++...+....    
T Consensus       369 ~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~  448 (876)
T d1qgra_         369 PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY  448 (876)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT
T ss_pred             HHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHH
Confidence            9999999999999999999999998877665   345567888888899999999999999999999987754332    


Q ss_pred             ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCh----------------HHHHHhhHHHHHHhccC---CCHHHH--
Q 006898          278 RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP----------------ELAIQHILPCVKELSSD---SSQHVR--  336 (626)
Q Consensus       278 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----------------~~~~~~l~~~l~~l~~d---~~~~vr--  336 (626)
                      ...+++.+...+++ ++.++..+..++..+......                ..+.+.+++.+...+.+   .+..+|  
T Consensus       449 ~~~~~~~l~~~l~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~  527 (876)
T d1qgra_         449 LAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSS  527 (876)
T ss_dssp             HHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHH
T ss_pred             hhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccccHhHHHH
Confidence            23456666666655 567888777777666543210                00111222222222111   011112  


Q ss_pred             ------------------------------------------------------HHHHHHHHhhhhhhcHHHH---HHhH
Q 006898          337 ------------------------------------------------------SALASVIMGMAPLLGKDAT---IEQL  359 (626)
Q Consensus       337 ------------------------------------------------------~~~~~~l~~l~~~~~~~~~---~~~l  359 (626)
                                                                            ..++..+..+....+.+..   .+.+
T Consensus       528 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~i  607 (876)
T d1qgra_         528 AYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVV  607 (876)
T ss_dssp             HHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHH
T ss_pred             HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHH
Confidence                                                                  2222233333333333222   2456


Q ss_pred             HHHHHHhhc--CCCHHHHHHHHHhhHHHHhhhchhh--HHhhHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHhhChhh--
Q 006898          360 LPIFLSLLK--DEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVGF--  432 (626)
Q Consensus       360 ~~~l~~~l~--d~~~~vr~~a~~~L~~~~~~~~~~~--~~~~i~~~l~~~~~~~-~~~~r~~~~~~l~~l~~~~~~~~--  432 (626)
                      ++.+...+.  +++..++..++.+++.+....+...  +.+.++|.+.+.+++. ++.+|..++..++.+....+...  
T Consensus       608 ~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~  687 (876)
T d1qgra_         608 MASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIP  687 (876)
T ss_dssp             HHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred             HHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhHHhhhh
Confidence            666777665  3567899999999999988877653  3467888888877654 57899999999999888766543  


Q ss_pred             HHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhhhcC---C-Ch-------HHHHHHHH
Q 006898          433 FDDKLGALCMQWLQDKV--YSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINN---P-HY-------LYRMTILR  497 (626)
Q Consensus       433 ~~~~l~p~l~~~l~d~~--~~VR~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~l~~---~-~~-------~vR~~a~~  497 (626)
                      +.+.+++.+...+++++  ..+|..++.+++.++..+|...  +.+.++|.+.+.++.   + +.       .+|..++.
T Consensus       688 ~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~~~~~~~yl~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~  767 (876)
T d1qgra_         688 FCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLE  767 (876)
T ss_dssp             HHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHH
Confidence            45678888888887754  6799999999999999988753  235566666654432   2 11       35777777


Q ss_pred             HHHHhccccC-------h--HHhh---hcHHHHHhhh--CCCCCchHHHHHHHHHHHHHhhhccchh-----hhcccchH
Q 006898          498 AISLLAPVMG-------S--EITC---SRLLPVVINA--SKDRVPNIKFNVAKVLQSLIPIVDQSVS-----TFSVSPFS  558 (626)
Q Consensus       498 ~l~~i~~~~~-------~--~~~~---~~~l~~l~~~--l~d~~~~vR~~a~~~l~~i~~~~~~~~~-----~~~i~~~l  558 (626)
                      +++.+...+.       .  ..+.   ..++..+...  ..+.+..++..++.+++.+...+|....     .+.+.+.+
T Consensus       768 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~v~~ll  847 (876)
T d1qgra_         768 AYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELL  847 (876)
T ss_dssp             HHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHH
T ss_pred             HHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence            7776643211       0  0111   2222222222  2456678999999999999999987522     24566777


Q ss_pred             HhhhccCCCcccccccccCchhHHHHHHHHHHHHHh
Q 006898          559 FMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCHRWW  594 (626)
Q Consensus       559 ~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~~~~  594 (626)
                      . ...++++...|.         .|.++...+.++.
T Consensus       848 ~-~~~~s~~~~~~~---------~a~~~~~~~~~~~  873 (876)
T d1qgra_         848 T-EGRRSKTNKAKT---------LARWATKELRKLK  873 (876)
T ss_dssp             H-HHHHCSCHHHHH---------HHHHHHHHHHHHH
T ss_pred             H-HHHhCCCHHHHH---------HHHHHHHHHHHhc
Confidence            7 778889999999         9999998887664

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.2e-18  Score=192.88  Aligned_cols=562  Identities=14%  Similarity=0.084  Sum_probs=376.8

Q ss_pred             ccHHHHHHHHhhHHHHHH---------------hhChHhhhhhhcccccc-ccCCchHHHHHHHHHHhccccccCCcchh
Q 006898           21 DDIQLRLNSIRRLSTIAR---------------ALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHA   84 (626)
Q Consensus        21 ~d~~~r~~a~~~l~~i~~---------------~~~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~   84 (626)
                      .+...|..|...|++...               .++ +..+..+...+.+ +.+++ .+|+.++.+++.++..--....|
T Consensus        49 ~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~~i~-~~~k~~ik~~ll~~l~~~~-~~~~~~a~~i~~i~~~~~p~~~W  126 (876)
T d1qgra_          49 NSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAID-ANARREVKNYVLHTLGTET-YRPSSASQCVAGIACAEIPVNQW  126 (876)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHTTTCC-SSSCHHHHHHHHHHHHHGGGTCC
T ss_pred             CCHHHHHHHHHHHHHHhhccccchhhhhhcccccCC-HHHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHCCcccc
Confidence            346677777766655432               122 2223334444444 23333 35666778887776642223468


Q ss_pred             hcchHHHhhhhcCc--chHHHHHHHHHHHHHHhhcChhhHHH---hHHHHHHHHhcCC--ccchhHHHhhHhHHhcCCCC
Q 006898           85 HVLLPPLETLCTVE--ETCVRDKAVESLCRIGSQMRESDLVD---WYIPLVKRLAAGE--WFTARVSACGLFHIAYPSAP  157 (626)
Q Consensus        85 ~~l~~~l~~l~~~~--~~~vR~~a~~~l~~i~~~~~~~~~~~---~l~~~l~~l~~~~--~~~~r~~a~~~l~~~~~~~~  157 (626)
                      +.++|.+...+.++  ...+|..+..++..+++.+.++....   .+++.+...+.+.  +..+|..+...+........
T Consensus       127 peli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~  206 (876)
T d1qgra_         127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK  206 (876)
T ss_dssp             TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH
T ss_pred             HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhh
Confidence            88998877765443  46789999999999999887754433   3566666555433  45678888888877766554


Q ss_pred             h-----HHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCcc---chhhhHHHHHHHhhcCCchhHHHHHHHHHHHh
Q 006898          158 D-----ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA---HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAAL  229 (626)
Q Consensus       158 ~-----~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l  229 (626)
                      .     .....+++.+.....++++.+|..+++++..++...+..   ...+.+.+.+.....+..++++..++..+..+
T Consensus       207 ~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i  286 (876)
T d1qgra_         207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNV  286 (876)
T ss_dssp             HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            3     245668888888899999999999999999999877642   12234556666677788888888888887776


Q ss_pred             hcccCc-----------------------hhhhhhhHHHHHHhc-------CCCCHHHHHHHHHHHHHHHHHhCCCcccc
Q 006898          230 GKLLEP-----------------------QDCVAHILPVIVNFS-------QDKSWRVRYMVANQLYELCEAVGPEPTRM  279 (626)
Q Consensus       230 ~~~~~~-----------------------~~~~~~i~~~l~~~~-------~d~~~~vR~~a~~~l~~l~~~~~~~~~~~  279 (626)
                      ++....                       ....+.+.|.+....       .+.++.+|..+..++..++...+... .+
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~-~~  365 (876)
T d1qgra_         287 CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI-VP  365 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGG-HH
T ss_pred             HHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhh-hh
Confidence            642210                       112334555554433       23466799999999999998887544 35


Q ss_pred             chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChH---HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHH---
Q 006898          280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---  353 (626)
Q Consensus       280 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~---  353 (626)
                      .+++.+.+.+.+.++..|.++...++.+.......   .+...+++.+...+.|+++.||.+++.+++.+++..+..   
T Consensus       366 ~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~  445 (876)
T d1qgra_         366 HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIN  445 (876)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSS
T ss_pred             hhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhh
Confidence            67788888889999999999999988877655543   334667788888899999999999999999998766542   


Q ss_pred             -HHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhch----------------hhHHhhHHHHHHHHhcC---CChHH
Q 006898          354 -ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI----------------DLLSQSLLPAIVELAED---RHWRV  413 (626)
Q Consensus       354 -~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~----------------~~~~~~i~~~l~~~~~~---~~~~~  413 (626)
                       .+...+++.+...+.+ ++.++..++.++..+......                ..+.+.+++.+....++   ....+
T Consensus       446 ~~~~~~~~~~l~~~l~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~  524 (876)
T d1qgra_         446 DVYLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNL  524 (876)
T ss_dssp             TTTHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTH
T ss_pred             HHHhhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccccHhH
Confidence             3355677777777765 688999999888887654321                11234567777777654   34668


Q ss_pred             HHHHHHHHHHHHHhhChhh------HHHHHHHHHHHHhcCC----ch-------HHHHHHHHHHHHHHHHhChHH---Hh
Q 006898          414 RLAIIEYIPLLASQLGVGF------FDDKLGALCMQWLQDK----VY-------SIRDAAANNLKRLAEEFGPEW---AM  473 (626)
Q Consensus       414 r~~~~~~l~~l~~~~~~~~------~~~~l~p~l~~~l~d~----~~-------~VR~~a~~~l~~l~~~~~~~~---~~  473 (626)
                      |..+++.+..+........      +...+++.+...+...    ..       ..+.....++..+....+...   ..
T Consensus       525 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  604 (876)
T d1qgra_         525 RSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS  604 (876)
T ss_dssp             HHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH
T ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHHHHHHHcchhhhhhhH
Confidence            8888888888776554322      1223344444433221    11       123334445555555555542   23


Q ss_pred             hhhHHHHHhhhcC--CChHHHHHHHHHHHHhccccChH--HhhhcHHHHHhhhCCCCC-chHHHHHHHHHHHHHhhhccc
Q 006898          474 QHITPQVLEMINN--PHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRV-PNIKFNVAKVLQSLIPIVDQS  548 (626)
Q Consensus       474 ~~il~~l~~~l~~--~~~~vR~~a~~~l~~i~~~~~~~--~~~~~~l~~l~~~l~d~~-~~vR~~a~~~l~~i~~~~~~~  548 (626)
                      +.+++.+.+.+.+  ++..++..++.+++.++...+..  .+.+.++|.+...+++.. +++|..++.+++.+....+..
T Consensus       605 ~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~  684 (876)
T d1qgra_         605 DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSN  684 (876)
T ss_dssp             HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhHHh
Confidence            5667777776653  56789999999999998877654  356788999998887655 679999999999998877653


Q ss_pred             --hhhhcccchHHhhhccCC--CcccccccccCchhHHHHHHHHHHHHHhhc
Q 006898          549 --VSTFSVSPFSFMLYLNVN--NFNVGFIFAAFPLVLFSCLALNYCHRWWRK  596 (626)
Q Consensus       549 --~~~~~i~~~l~~~l~~d~--d~~vr~~~~~~~~~~~a~~al~~~~~~~~~  596 (626)
                        .+.+.+++.+. ..++++  +.++|.         .+..+++.+....+.
T Consensus       685 ~~~~~~~i~~~l~-~~l~~~~~~~~~k~---------~~~~~i~~i~~~~~~  726 (876)
T d1qgra_         685 IIPFCDEVMQLLL-ENLGNENVHRSVKP---------QILSVFGDIALAIGG  726 (876)
T ss_dssp             GHHHHHHHHHHHH-HHHTCTTSCGGGHH---------HHHHHHHHHHHHHGG
T ss_pred             hhhhHHHHHHHHH-HHhCCccCCHHHHH---------HHHHHHHHHHHHHhH
Confidence              45567777777 555554  456888         777787777555443

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=9.6e-19  Score=178.16  Aligned_cols=310  Identities=15%  Similarity=0.135  Sum_probs=165.5

Q ss_pred             hHHHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCC--chhHHHHHHHHHHHhhcccCc
Q 006898          158 DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD--QDSVRLLAVEGCAALGKLLEP  235 (626)
Q Consensus       158 ~~~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~--~~~vr~~a~~~l~~l~~~~~~  235 (626)
                      ++.+..+.+.++..+.+++..+| .++..++.++....+...|+.+++.+...+.++  ++.++..++.++..+.+....
T Consensus        84 ~~~~~~i~~~ll~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~  162 (458)
T d1ibrb_          84 ANARREVKNYVLQTLGTETYRPS-SASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP  162 (458)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSSSC-SHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCG
T ss_pred             HHHHHHHHHHHHhccCCCcHHHH-HHHHHHHHHHHHhCCcccCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccc
Confidence            44555566666666655554333 345556555555444445566666666655443  345566666666666555444


Q ss_pred             h---hhhhhhHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHhC----CCccccchHHHHHHhcCCChHHHHHHHHHhHHH
Q 006898          236 Q---DCVAHILPVIVNFSQ--DKSWRVRYMVANQLYELCEAVG----PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTK  306 (626)
Q Consensus       236 ~---~~~~~i~~~l~~~~~--d~~~~vR~~a~~~l~~l~~~~~----~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~  306 (626)
                      .   .....+++.+...+.  +.+..+|..++++++.+.....    .......+.+.+...++++++++|..++.++..
T Consensus       163 ~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~  242 (458)
T d1ibrb_         163 EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVK  242 (458)
T ss_dssp             GGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHH
Confidence            2   223344555544443  3455666666666665543221    111122345555566666666777777776666


Q ss_pred             HHHhhChH---HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhc-----------------------HHHHHHhHH
Q 006898          307 FCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG-----------------------KDATIEQLL  360 (626)
Q Consensus       307 l~~~~~~~---~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~-----------------------~~~~~~~l~  360 (626)
                      +++..+..   .+.+.+.+.+.....+.+..++..+++.+..++....                       .....+.+.
T Consensus       243 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  322 (458)
T d1ibrb_         243 IMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLV  322 (458)
T ss_dssp             HHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHh
Confidence            66544321   1112223334444455666666666666655542210                       011123344


Q ss_pred             HHHHHhhc-------CCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhh-
Q 006898          361 PIFLSLLK-------DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF-  432 (626)
Q Consensus       361 ~~l~~~l~-------d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~-  432 (626)
                      |.+...+.       |.+..+|..+..++..+....|.+.+ +.+++.+.+.+++++|++|.+++.+++.+++...... 
T Consensus       323 ~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~-~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~  401 (458)
T d1ibrb_         323 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQL  401 (458)
T ss_dssp             HHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTT
T ss_pred             hhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhh-hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHH
Confidence            44444432       22345666666666666666655433 4566666666666667777766666666665433221 


Q ss_pred             --HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh
Q 006898          433 --FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP  469 (626)
Q Consensus       433 --~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~  469 (626)
                        +.+.++|.+...++|+++.||.+|+++++.++..++.
T Consensus       402 ~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~  440 (458)
T d1ibrb_         402 KPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE  440 (458)
T ss_dssp             CTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhc
Confidence              2344666666666666666666666666666665543

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.1e-16  Score=162.78  Aligned_cols=387  Identities=14%  Similarity=0.137  Sum_probs=272.9

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCC--chhHHHHHHHHHHHhhcccCc-------
Q 006898          165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD--QDSVRLLAVEGCAALGKLLEP-------  235 (626)
Q Consensus       165 ~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~--~~~vr~~a~~~l~~l~~~~~~-------  235 (626)
                      ...+.. +-+++..+|..|-+.|..+...-+     +..+..+...+.|+  +..+|..|...+.+.......       
T Consensus         3 ~~il~~-~~s~d~~~r~~A~~~L~~~~~~~~-----~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~   76 (458)
T d1ibrb_           3 ITILEK-TVSPDRLELEAAQKFLERAAVENL-----PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQ   76 (458)
T ss_dssp             HHHHHH-TTCSCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred             HHHHHH-HhCcCHHHHHHHHHHHHHHHhcCc-----hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHh
Confidence            344433 346789999999999998877422     23445555555443  457888888777766543321       


Q ss_pred             -------hhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCC--ChHHHHHHHHHhHHH
Q 006898          236 -------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD--NEAEVRIAAAGKVTK  306 (626)
Q Consensus       236 -------~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~  306 (626)
                             ......+.+.+.....+++..+| .++.+++.++...........+++.+.+.+.+  .++.++..++.+++.
T Consensus        77 ~~~~~l~~~~~~~i~~~ll~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~  155 (458)
T d1ibrb_          77 QRWLAIDANARREVKNYVLQTLGTETYRPS-SASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGY  155 (458)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHHTTCCCSSSC-SHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred             hhhccCCHHHHHHHHHHHHhccCCCcHHHH-HHHHHHHHHHHHhCCcccCcchhHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence                   12234455566666666665444 55677777766543333345788888887754  446788899999999


Q ss_pred             HHHhhChH---HHHHhhHHHHHHhcc--CCCHHHHHHHHHHHHhhhhhhcH----HHHHHhHHHHHHHhhcCCCHHHHHH
Q 006898          307 FCRILNPE---LAIQHILPCVKELSS--DSSQHVRSALASVIMGMAPLLGK----DATIEQLLPIFLSLLKDEFPDVRLN  377 (626)
Q Consensus       307 l~~~~~~~---~~~~~l~~~l~~l~~--d~~~~vr~~~~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~  377 (626)
                      +.......   .....+++.+.+.+.  +.+..+|..++.++..+......    ......+.+.+...+.++++++|..
T Consensus       156 ~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  235 (458)
T d1ibrb_         156 ICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVA  235 (458)
T ss_dssp             HHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred             HHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHH
Confidence            88876544   233556676666654  45688999999998888765432    2344567788888899999999999


Q ss_pred             HHHhhHHHHhhhchh---hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC-----------------------hh
Q 006898          378 IISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG-----------------------VG  431 (626)
Q Consensus       378 a~~~L~~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~-----------------------~~  431 (626)
                      ++.++..+.+..+..   .+...+.+.+.....+.+..++..+++.+..+++...                       ..
T Consensus       236 ~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (458)
T d1ibrb_         236 ALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAK  315 (458)
T ss_dssp             HHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHH
Confidence            999999988766532   1223344555566678888999999998888765321                       01


Q ss_pred             hHHHHHHHHHHHHh-------cCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhcc
Q 006898          432 FFDDKLGALCMQWL-------QDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAP  504 (626)
Q Consensus       432 ~~~~~l~p~l~~~l-------~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~  504 (626)
                      ...+.+.|.+...+       .|.++.+|..+..++..++...++. ..+.++|.+.+.+++++|.+|.+++.+++.+++
T Consensus       316 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~  394 (458)
T d1ibrb_         316 GALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD-IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILE  394 (458)
T ss_dssp             HHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHh-hhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            12344566666654       2455679999999999999998866 457788999999999999999999999999998


Q ss_pred             ccChH---HhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccchhhhc-ccchHH
Q 006898          505 VMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVSTFS-VSPFSF  559 (626)
Q Consensus       505 ~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~-i~~~l~  559 (626)
                      .+..+   .+.+.++|.+...++|+++.||.+|+++|+++...+++....+. +.|.+.
T Consensus       395 ~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~~~~~~~l~~ll~  453 (458)
T d1ibrb_         395 GPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQ  453 (458)
T ss_dssp             SSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHH
T ss_pred             hcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHH
Confidence            66543   35778999999999999999999999999999998876533233 344443

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=4.7e-16  Score=161.22  Aligned_cols=460  Identities=13%  Similarity=0.063  Sum_probs=307.0

Q ss_pred             chhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhh-H--HHhHHHHHHHHhcC-CccchhHHHhhHhHHhcCCCC
Q 006898           82 EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD-L--VDWYIPLVKRLAAG-EWFTARVSACGLFHIAYPSAP  157 (626)
Q Consensus        82 ~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~-~--~~~l~~~l~~l~~~-~~~~~r~~a~~~l~~~~~~~~  157 (626)
                      +.....+|.|..++.+++..+|..|+.++..+...-.... +  ...+++.+..++.. .+...+..++..+..++.+..
T Consensus        13 ~~~~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~   92 (529)
T d1jdha_          13 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE   92 (529)
T ss_dssp             ----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHH
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCch
Confidence            3445567888888888899999999999999876533211 1  12356666666644 456788888888888865322


Q ss_pred             hH---HHHHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCcc---chhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhc
Q 006898          158 DI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA---HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGK  231 (626)
Q Consensus       158 ~~---~~~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~  231 (626)
                      ..   .....++.+..+++++++.++..++.+|++++...+..   ......+|.+..+++++++.++..++.++..++.
T Consensus        93 ~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~  172 (529)
T d1jdha_          93 GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY  172 (529)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhh
Confidence            11   22345788889999999999999999999998764431   1234578899999999999999999999998875


Q ss_pred             ccCc---hhhhhhhHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHhCC--CccccchHHHHHHhcCCChHHHHHHHHHhHH
Q 006898          232 LLEP---QDCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVT  305 (626)
Q Consensus       232 ~~~~---~~~~~~i~~~l~~~~-~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~  305 (626)
                      .-..   .......++.+..++ ......++..++.++..++..-..  .......++.+..++.+.+++++..++.++.
T Consensus       173 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~  252 (529)
T d1jdha_         173 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR  252 (529)
T ss_dssp             TCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHH
Confidence            4322   112333455555555 445677888888888876532110  0122356788889999999999999999998


Q ss_pred             HHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcH--HH-HHHhHHHHHHHhhc--CCCHHHHHHHHH
Q 006898          306 KFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--DA-TIEQLLPIFLSLLK--DEFPDVRLNIIS  380 (626)
Q Consensus       306 ~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~--~~-~~~~l~~~l~~~l~--d~~~~vr~~a~~  380 (626)
                      .+.............++.+.+++++.+..++..++.++..++..-..  .. .....++.+...+.  .+.+.++..++.
T Consensus       253 ~ls~~~~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~  332 (529)
T d1jdha_         253 NLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC  332 (529)
T ss_dssp             HHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hccccccchhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHH
Confidence            88764433322356688888999999999999999999988743211  11 12235556665553  456788889999


Q ss_pred             hhHHHHhhhchh------hHHhhHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHhhCh--hhHHHHHHHHHHHHhcCCch-
Q 006898          381 KLDQVNQVIGID------LLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLQDKVY-  450 (626)
Q Consensus       381 ~L~~~~~~~~~~------~~~~~i~~~l~~~~~~~-~~~~r~~~~~~l~~l~~~~~~--~~~~~~l~p~l~~~l~d~~~-  450 (626)
                      ++..+.......      ......++.+.+++.++ ++.+...++..+..++..-..  .......+|.+..++.+... 
T Consensus       333 aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~  412 (529)
T d1jdha_         333 ALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD  412 (529)
T ss_dssp             HHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchhhhhhhhhhhcccHHHHHHHHhcCCHH
Confidence            998876432211      11223467777777654 577788888888777643221  11223356666666654433 


Q ss_pred             ---------------------HHHHHHHHHHHHHHHHhChH--HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccC
Q 006898          451 ---------------------SIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG  507 (626)
Q Consensus       451 ---------------------~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~  507 (626)
                                           +++..++.++..+.......  ......++.+.+++.++++.+|..++.++.++...-.
T Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~  492 (529)
T d1jdha_         413 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE  492 (529)
T ss_dssp             HC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHH
T ss_pred             HHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccCHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcChh
Confidence                                 34444445554443221111  1124567889999999999999999999999875322


Q ss_pred             hH--HhhhcHHHHHhhhCCCCCchHHHHHHHHHHHH
Q 006898          508 SE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSL  541 (626)
Q Consensus       508 ~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i  541 (626)
                      ..  ......++.|..+++++++.||..++.+|.++
T Consensus       493 ~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~l  528 (529)
T d1jdha_         493 AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             hHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            11  22445788999999999999999999999876

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.4e-15  Score=157.50  Aligned_cols=457  Identities=14%  Similarity=0.061  Sum_probs=314.0

Q ss_pred             HhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChH----HHHHHHHHHHHhcCC-CCHHHHHHHHHhHHHHHHhhCc--
Q 006898          124 DWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQD-DMPMVRRSAASNLGKFAATVEP--  196 (626)
Q Consensus       124 ~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~----~~~~l~~~l~~l~~d-~~~~vR~~a~~~l~~l~~~~~~--  196 (626)
                      ...+|.+.+++++++..+|..|+..+..+..+....    ....+++.+..++.+ .+..+|+.++.+|..++..-..  
T Consensus        16 ~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~   95 (529)
T d1jdha_          16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL   95 (529)
T ss_dssp             -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHH
Confidence            345677888888888889999999999987653221    114577777777754 5688999999999998653221  


Q ss_pred             cchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCch---hhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC
Q 006898          197 AHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG  273 (626)
Q Consensus       197 ~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~  273 (626)
                      ..+....+|.+..+++++++.++..++.+|.+++...+..   ......+|.+..++++++..++..++.+++.++..-.
T Consensus        96 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~  175 (529)
T d1jdha_          96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ  175 (529)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhh
Confidence            1223356899999999999999999999999998765542   2245678899999999999999999999998864211


Q ss_pred             ---CCccccchHHHHHHhcC-CChHHHHHHHHHhHHHHHHhhChH--HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhh
Q 006898          274 ---PEPTRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMA  347 (626)
Q Consensus       274 ---~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~  347 (626)
                         ........++.+..++. .+.+.++..+...+..++..-...  ......++.+..++.+++..++..++.++..+.
T Consensus       176 ~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls  255 (529)
T d1jdha_         176 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS  255 (529)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhcc
Confidence               00112345667777764 344678888888888776432221  233456788888899999999999998888877


Q ss_pred             hhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchh---hHHhhHHHHHHHHh--cCCChHHHHHHHHHHH
Q 006898          348 PLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELA--EDRHWRVRLAIIEYIP  422 (626)
Q Consensus       348 ~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~---~~~~~i~~~l~~~~--~~~~~~~r~~~~~~l~  422 (626)
                      ............++.+..++.+.+..++..++.+|..++..-...   ......++.+...+  ..++..++..++.++.
T Consensus       256 ~~~~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~  335 (529)
T d1jdha_         256 DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR  335 (529)
T ss_dssp             TTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ccccchhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhh
Confidence            544333333467889999999999999999999999886432111   11234566666655  3456778888888888


Q ss_pred             HHHHhhChhhH------HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHhChH--HHhhhhHHHHHhhhcCCC-----
Q 006898          423 LLASQLGVGFF------DDKLGALCMQWLQDKV-YSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMINNPH-----  488 (626)
Q Consensus       423 ~l~~~~~~~~~------~~~l~p~l~~~l~d~~-~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~l~~~~-----  488 (626)
                      .++........      ....++.+..++.++. ..++..++.++..+...-...  ......+|.+.+++.+.+     
T Consensus       336 ~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~  415 (529)
T d1jdha_         336 HLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQR  415 (529)
T ss_dssp             HHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-
T ss_pred             cccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchhhhhhhhhhhcccHHHHHHHHhcCCHHHHH
Confidence            87644322211      1223666777776544 567788888888776432211  122445666666654332     


Q ss_pred             -----------------hHHHHHHHHHHHHhccccChHH--hhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc-
Q 006898          489 -----------------YLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-  548 (626)
Q Consensus       489 -----------------~~vR~~a~~~l~~i~~~~~~~~--~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~-  548 (626)
                                       ..++..++.+++.++.......  .....++.|..++.++++++|..++.+|..+...-... 
T Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~  495 (529)
T d1jdha_         416 RTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAE  495 (529)
T ss_dssp             ----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred             HHHhhhhhHHhhcccchHHHHHHHHHHHHHHccCHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcChhhHH
Confidence                             3445556666666654322211  13456788999999999999999999999986542221 


Q ss_pred             -hhhhcccchHHhhhccCCCcccccccccCchhHHHHHHHHHH
Q 006898          549 -VSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYC  590 (626)
Q Consensus       549 -~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~  590 (626)
                       ......++.|. ++..++++.||.         .|..||..+
T Consensus       496 ~i~~~g~~~~L~-~Ll~s~n~~v~~---------~a~~aL~~l  528 (529)
T d1jdha_         496 AIEAEGATAPLT-ELLHSRNEGVAT---------YAAAVLFRM  528 (529)
T ss_dssp             HHHHTTCHHHHH-HGGGCSSHHHHH---------HHHHHHHHH
T ss_pred             HHHHCCCHHHHH-HHhCCCCHHHHH---------HHHHHHHHh
Confidence             23445778888 899999999999         999998764

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=2.2e-15  Score=151.94  Aligned_cols=374  Identities=10%  Similarity=0.069  Sum_probs=269.2

Q ss_pred             HHHhcCCCCHHHHHHHHHhHHHHHHhhCcc----chhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhhcccCc---hhhh
Q 006898          168 YTQLCQDDMPMVRRSAASNLGKFAATVEPA----HLKTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEP---QDCV  239 (626)
Q Consensus       168 l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~ll~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~---~~~~  239 (626)
                      +.+.++++++..+..|+.++.++......+    .....++|.+.+++++. ++++|..++.+|..++...+.   ....
T Consensus        18 lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~   97 (434)
T d1q1sc_          18 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD   97 (434)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhh
Confidence            345678889999999999999887544332    12335788999998654 568999999999998855433   1234


Q ss_pred             hhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCCChH-----HHHHHHHHhHHHHHHhh
Q 006898          240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNEA-----EVRIAAAGKVTKFCRIL  311 (626)
Q Consensus       240 ~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~-----~vr~~a~~~l~~l~~~~  311 (626)
                      ...+|.+..++.+++..++..++.+|+.++....   ........++.+..++...+.     .....+...+..++...
T Consensus        98 ~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~  177 (434)
T d1q1sc_          98 GGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK  177 (434)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCC
T ss_pred             ccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcc
Confidence            5678889999999999999999999998874211   111233566777777754331     22233444555544322


Q ss_pred             C---hHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHH---HHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHH
Q 006898          312 N---PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV  385 (626)
Q Consensus       312 ~---~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~  385 (626)
                      .   .......++|.+..++.+.++.++..++.++..++......   .....++|.+..++++.++.++..++.++..+
T Consensus       178 ~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l  257 (434)
T d1q1sc_         178 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI  257 (434)
T ss_dssp             TTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhH
Confidence            1   11334678899999999999999999999999887543211   11234788899999999999999999999988


Q ss_pred             Hhhhch---hhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh---hhHHHHHHHHHHHHhcCCchHHHHHHHHH
Q 006898          386 NQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANN  459 (626)
Q Consensus       386 ~~~~~~---~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~VR~~a~~~  459 (626)
                      +.....   ..+...+++.+.+++.+++..+|..++..+..++.....   ......++|.+...+.+++..+|..++++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~  337 (434)
T d1q1sc_         258 VTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA  337 (434)
T ss_dssp             TTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHH
T ss_pred             HhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHH
Confidence            653211   122345667788889999999999999999988753211   12234478889999999999999999999


Q ss_pred             HHHHHHHhChHH----HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhcccc---C-hHHh-----hhcHHHHHhhhCCCC
Q 006898          460 LKRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM---G-SEIT-----CSRLLPVVINASKDR  526 (626)
Q Consensus       460 l~~l~~~~~~~~----~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~---~-~~~~-----~~~~l~~l~~~l~d~  526 (626)
                      ++.++...+.+.    ....+++.+.+++..+++.++..++.++.++.+..   + .+.+     ....++.+..+..++
T Consensus       338 l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~  417 (434)
T d1q1sc_         338 ITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHE  417 (434)
T ss_dssp             HHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCS
T ss_pred             HHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCC
Confidence            999988765542    23567899999999999999999999999887532   2 1211     123566777788899


Q ss_pred             CchHHHHHHHHHHHH
Q 006898          527 VPNIKFNVAKVLQSL  541 (626)
Q Consensus       527 ~~~vR~~a~~~l~~i  541 (626)
                      +++||..|.+.|.+.
T Consensus       418 n~~i~~~a~~il~~~  432 (434)
T d1q1sc_         418 NESVYKASLNLIEKY  432 (434)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999988764

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=1.4e-15  Score=153.47  Aligned_cols=377  Identities=11%  Similarity=0.085  Sum_probs=272.2

Q ss_pred             HHHHHHhhcCCchhHHHHHHHHHHHhhcccCc----hhhhhhhHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhCC---C
Q 006898          204 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGP---E  275 (626)
Q Consensus       204 l~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~i~~~l~~~~~d-~~~~vR~~a~~~l~~l~~~~~~---~  275 (626)
                      +..+.+.+++++++.+..|+.++..+...-..    ......++|.+.+++.+ +++.+|..++.+|..++.....   .
T Consensus        15 i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~   94 (434)
T d1q1sc_          15 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA   94 (434)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhH
Confidence            44556678888999999999999887653332    12344688999888854 5678999999999988742111   1


Q ss_pred             ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCh--H-HHHHhhHHHHHHhccCCCH-----HHHHHHHHHHHhhh
Q 006898          276 PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--E-LAIQHILPCVKELSSDSSQ-----HVRSALASVIMGMA  347 (626)
Q Consensus       276 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~l~~~l~~l~~d~~~-----~vr~~~~~~l~~l~  347 (626)
                      ......+|.+..++++++++++..|+.+|..++..-..  . ......++.+..++...+.     .....++..+..++
T Consensus        95 i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~  174 (434)
T d1q1sc_          95 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC  174 (434)
T ss_dssp             HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHT
T ss_pred             hhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHh
Confidence            22346899999999999999999999999998753211  1 2223456666666554322     22333444555554


Q ss_pred             hhh---cHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchh---hHHhhHHHHHHHHhcCCChHHHHHHHHHH
Q 006898          348 PLL---GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYI  421 (626)
Q Consensus       348 ~~~---~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~r~~~~~~l  421 (626)
                      ...   ........++|.+..++.+.+++++..++.++..+.......   .....++|.+.++++++++.++..++..+
T Consensus       175 ~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l  254 (434)
T d1q1sc_         175 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI  254 (434)
T ss_dssp             CCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred             hcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhh
Confidence            322   222345678899999999999999999999999886542211   12245789999999999999999999999


Q ss_pred             HHHHHhhC---hhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh---HHHhhhhHHHHHhhhcCCChHHHHHH
Q 006898          422 PLLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTI  495 (626)
Q Consensus       422 ~~l~~~~~---~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~l~~~~~~vR~~a  495 (626)
                      ..++....   ...+...+++.+..++.+++..+|..++.+++.++.....   ......++|.+.+.+.++++.+|..+
T Consensus       255 ~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a  334 (434)
T d1q1sc_         255 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEA  334 (434)
T ss_dssp             HHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHH
T ss_pred             hhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHH
Confidence            98874321   1122344567788899999999999999999999753211   12345689999999999999999999


Q ss_pred             HHHHHHhccccChHH----hhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhcc---c-h-----hhhcccchHHhhh
Q 006898          496 LRAISLLAPVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---S-V-----STFSVSPFSFMLY  562 (626)
Q Consensus       496 ~~~l~~i~~~~~~~~----~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~---~-~-----~~~~i~~~l~~~l  562 (626)
                      +.+++++....+.+.    ....+++.|..+++++++.++..+++++..+......   . .     ....+++.+. .+
T Consensus       335 ~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~-~L  413 (434)
T d1q1sc_         335 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIE-AL  413 (434)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHH-HH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHH-HH
Confidence            999999988766542    2345789999999999999999999999998765322   1 1     1224566777 88


Q ss_pred             ccCCCcccccccccCchhHHHHHHHHHH
Q 006898          563 LNVNNFNVGFIFAAFPLVLFSCLALNYC  590 (626)
Q Consensus       563 ~~d~d~~vr~~~~~~~~~~~a~~al~~~  590 (626)
                      ..+++.+|+.         .|...+++.
T Consensus       414 ~~~~n~~i~~---------~a~~il~~~  432 (434)
T d1q1sc_         414 QRHENESVYK---------ASLNLIEKY  432 (434)
T ss_dssp             HTCSSHHHHH---------HHHHHHHHH
T ss_pred             HcCCCHHHHH---------HHHHHHHHH
Confidence            8899999999         888777654

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=1.2e-13  Score=141.78  Aligned_cols=377  Identities=11%  Similarity=0.090  Sum_probs=264.0

Q ss_pred             HHHHHhcCCCCHHHHHHHHHhHHHHHHhhCcc----chhhhHHHHHHHhhcC-CchhHHHHHHHHHHHhhcccCc---hh
Q 006898          166 SIYTQLCQDDMPMVRRSAASNLGKFAATVEPA----HLKTDIMSIFEDLTQD-DQDSVRLLAVEGCAALGKLLEP---QD  237 (626)
Q Consensus       166 ~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~ll~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~---~~  237 (626)
                      +.+...+.+++...+..++..+..+...-..+    .+...++|.+..+++. .++.++..|+.+|..++...+.   ..
T Consensus        79 ~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~  158 (503)
T d1wa5b_          79 PQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVV  158 (503)
T ss_dssp             HHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            33444556667777777777776654322211    1224467888887764 4567888888888888765432   12


Q ss_pred             hhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---CCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCh-
Q 006898          238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP-  313 (626)
Q Consensus       238 ~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-  313 (626)
                      ....++|.+..++.+++..++..++.+++.++....   ........++.+..++.+.++.++..++.++..++..... 
T Consensus       159 ~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~  238 (503)
T d1wa5b_         159 VDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ  238 (503)
T ss_dssp             HHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSC
T ss_pred             HhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccc
Confidence            345578888888888888899999888888774211   0112335778888888888888888888888888764321 


Q ss_pred             --HHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcH---HHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhh
Q 006898          314 --ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV  388 (626)
Q Consensus       314 --~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~  388 (626)
                        ......++|.+..++.+.++.++..++.++..++.....   ......+++.+..++.+.+..++..++.+++.++..
T Consensus       239 ~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~  318 (503)
T d1wa5b_         239 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG  318 (503)
T ss_dssp             CCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred             hHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHH
Confidence              133467788888888888999999998888888753221   122335678888899999999999999999988754


Q ss_pred             hchh---hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC---hhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 006898          389 IGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKR  462 (626)
Q Consensus       389 ~~~~---~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~---~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~  462 (626)
                      .+..   .....+++.+..++.++++.+|..++.++..++....   .......++|.+...+.+.+..|+..+++++..
T Consensus       319 ~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~n  398 (503)
T d1wa5b_         319 NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISN  398 (503)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHH
Confidence            3221   1223578888889999999999999999988864321   112234577888899988999999999999999


Q ss_pred             HHHHhCh--H----HHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccCh---------HHh-----hhcHHHHHhhh
Q 006898          463 LAEEFGP--E----WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---------EIT-----CSRLLPVVINA  522 (626)
Q Consensus       463 l~~~~~~--~----~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~---------~~~-----~~~~l~~l~~~  522 (626)
                      ++.....  +    .....+++.+.+++...+..+...++.++.++.+....         ..+     ....+..+..+
T Consensus       399 l~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~L  478 (503)
T d1wa5b_         399 ASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNC  478 (503)
T ss_dssp             HHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGG
T ss_pred             HHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHH
Confidence            9875432  1    12356788899999888999999999998887642211         111     12345566677


Q ss_pred             CCCCCchHHHHHHHHHHHHH
Q 006898          523 SKDRVPNIKFNVAKVLQSLI  542 (626)
Q Consensus       523 l~d~~~~vR~~a~~~l~~i~  542 (626)
                      ..+++.+|+..|.+.|....
T Consensus       479 q~~~~~~i~~~A~~il~~~f  498 (503)
T d1wa5b_         479 QQNENDKIYEKAYKIIETYF  498 (503)
T ss_dssp             GGCSCHHHHHHHHHHHHHHS
T ss_pred             HcCCCHHHHHHHHHHHHHHc
Confidence            78888899988888776644

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=6.5e-14  Score=143.83  Aligned_cols=376  Identities=11%  Similarity=0.062  Sum_probs=275.6

Q ss_pred             HHHHHHhhcCCchhHHHHHHHHHHHhhcccCc----hhhhhhhHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHhCC---C
Q 006898          204 MSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP---E  275 (626)
Q Consensus       204 l~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~i~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~---~  275 (626)
                      ++.+...+..++...+..++..+..+...-..    ......++|.+..++. +.+..++..++.+++.++.....   .
T Consensus        78 l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~  157 (503)
T d1wa5b_          78 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV  157 (503)
T ss_dssp             HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            45556667777888888888888776532221    1234567888888876 56788999999999888742110   1


Q ss_pred             ccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCh--H-HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhc-
Q 006898          276 PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--E-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG-  351 (626)
Q Consensus       276 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~-  351 (626)
                      .....++|.+..++.+++.+++..++.+++.++..-..  . .....+++.+..++.+.+..++..++.++..++.... 
T Consensus       158 ~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~  237 (503)
T d1wa5b_         158 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKP  237 (503)
T ss_dssp             HHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSS
T ss_pred             HHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCcc
Confidence            12345789999999988999999999999998763221  1 2334678888899999999999999999999875432 


Q ss_pred             --HHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhch---hhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 006898          352 --KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS  426 (626)
Q Consensus       352 --~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~---~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~  426 (626)
                        .......++|.+..++...+++++..++.++..+......   ......+++.+..++.++++.++..++.+++.++.
T Consensus       238 ~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~  317 (503)
T d1wa5b_         238 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT  317 (503)
T ss_dssp             CCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHH
Confidence              2234557899999999999999999999999988753221   12234678889999999999999999999999875


Q ss_pred             hhChh---hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChH----HHhhhhHHHHHhhhcCCChHHHHHHHHHH
Q 006898          427 QLGVG---FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE----WAMQHITPQVLEMINNPHYLYRMTILRAI  499 (626)
Q Consensus       427 ~~~~~---~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~----~~~~~il~~l~~~l~~~~~~vR~~a~~~l  499 (626)
                      ..+..   .....+++.+..++.+++..+|..++++++.++.. +++    .....++|.+.+.+.++++.+|..+++++
T Consensus       318 ~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~-~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l  396 (503)
T d1wa5b_         318 GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG-NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAI  396 (503)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHHccccchhHHhcccCChhHHHHHHHHH
Confidence            32211   12335788899999999999999999999998642 221    23467889999999999999999999999


Q ss_pred             HHhccccCh--HH----hhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhcc---------chh-----hhcccchHH
Q 006898          500 SLLAPVMGS--EI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---------SVS-----TFSVSPFSF  559 (626)
Q Consensus       500 ~~i~~~~~~--~~----~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~---------~~~-----~~~i~~~l~  559 (626)
                      .+++.....  +.    ....+++.+..+++..+.++...++.+|..+......         ..+     ....+..+.
T Consensus       397 ~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~  476 (503)
T d1wa5b_         397 SNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIF  476 (503)
T ss_dssp             HHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHH
T ss_pred             HHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHH
Confidence            999865432  11    2356788899999999999999999999888754321         001     113445566


Q ss_pred             hhhccCCCcccccccccCchhHHHHHHHHHH
Q 006898          560 MLYLNVNNFNVGFIFAAFPLVLFSCLALNYC  590 (626)
Q Consensus       560 ~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~  590 (626)
                       .+.++++.+|+.         .|..-++.+
T Consensus       477 -~Lq~~~~~~i~~---------~A~~il~~~  497 (503)
T d1wa5b_         477 -NCQQNENDKIYE---------KAYKIIETY  497 (503)
T ss_dssp             -GGGGCSCHHHHH---------HHHHHHHHH
T ss_pred             -HHHcCCCHHHHH---------HHHHHHHHH
Confidence             677788888888         666666543

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=2.9e-14  Score=133.89  Aligned_cols=254  Identities=16%  Similarity=0.057  Sum_probs=183.1

Q ss_pred             hhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhh
Q 006898          241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI  320 (626)
Q Consensus       241 ~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l  320 (626)
                      ...+.+.++++|+++.||..++..|+.+.        .+..+|.+..+++|+++.||..|+.+|+.+.......   +..
T Consensus        19 ~~~~~L~~~L~d~~~~vR~~A~~~L~~~~--------~~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~---~~~   87 (276)
T d1oyza_          19 LNDDELFRLLDDHNSLKRISSARVLQLRG--------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE---DNV   87 (276)
T ss_dssp             SCHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH---HHH
T ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHhhC--------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc---cch
Confidence            34556677888999999999999888664        2467888899999999999999999888775432222   222


Q ss_pred             HHH-HHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHH
Q 006898          321 LPC-VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL  399 (626)
Q Consensus       321 ~~~-l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~  399 (626)
                      .+. +..+++|+++.||..++.+++.++..-.  ...+.+++.+...+.|+++.||..++.+++.+..        ...+
T Consensus        88 ~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~--------~~~~  157 (276)
T d1oyza_          88 FNILNNMALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATI  157 (276)
T ss_dssp             HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCH
T ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHHccccc--hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch--------HHHH
Confidence            332 3445688999999999999888765322  2234677888888899999999988888776543        3456


Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHH
Q 006898          400 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ  479 (626)
Q Consensus       400 ~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~  479 (626)
                      +.+..+..+.++.+|..+...+.....  +.    ....+.+...+.|.+..+|..+..+++.+    +.    ...+|.
T Consensus       158 ~~l~~l~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~al~~~----~~----~~~~~~  223 (276)
T d1oyza_         158 PLLINLLKDPNGDVRNWAAFAININKY--DN----SDIRDCFVEMLQDKNEEVRIEAIIGLSYR----KD----KRVLSV  223 (276)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHTC--CC----HHHHHHHHHHTTCSCHHHHHHHHHHHHHT----TC----GGGHHH
T ss_pred             HHHHHhcccccchhhhhHHHHHHhhhc--cc----cccchhhhhhhhhhhhhhhhhhccccchh----hh----hhhHHH
Confidence            677777888888888877766654321  11    23555677788999999999998887654    22    346777


Q ss_pred             HHhhhcCCChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCC-CCchHHHHHHHHHH
Q 006898          480 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKD-RVPNIKFNVAKVLQ  539 (626)
Q Consensus       480 l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d-~~~~vR~~a~~~l~  539 (626)
                      +.+.+.|+  .+|..++.+++.+..        +..+|.|..++.+ ++.+||..|+++|.
T Consensus       224 L~~~l~d~--~vr~~a~~aL~~ig~--------~~~~~~L~~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         224 LCDELKKN--TVYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             HHHHHTSS--SCCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             HHHHhCCh--HHHHHHHHHHHHcCC--------HHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence            87777765  488999999998753        3467777776654 57889999998875

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=3.2e-14  Score=133.55  Aligned_cols=255  Identities=18%  Similarity=0.098  Sum_probs=190.6

Q ss_pred             chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhH
Q 006898          280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQL  359 (626)
Q Consensus       280 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l  359 (626)
                      ...+.+..+++|+++.||..|+..|+.+..        +..+|.+.++++|+++.||..++.+++.+....+...   ..
T Consensus        19 ~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~--------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~---~~   87 (276)
T d1oyza_          19 LNDDELFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED---NV   87 (276)
T ss_dssp             SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH---HH
T ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHhhCC--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccccc---ch
Confidence            345667899999999999999999988753        4457888999999999999999999998865433221   22


Q ss_pred             HH-HHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhChhhHHHHHH
Q 006898          360 LP-IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG  438 (626)
Q Consensus       360 ~~-~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~  438 (626)
                      .+ .+...++|+++.||..++.+|+.+....+..  ...+++.+.....|+++.+|..++..++.+..        ....
T Consensus        88 ~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~--~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~--------~~~~  157 (276)
T d1oyza_          88 FNILNNMALNDKSACVRATAIESTAQRCKKNPIY--SPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATI  157 (276)
T ss_dssp             HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG--HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCH
T ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHHccccchh--hHHHHHHHHHHhcCcchHHHHHHHHHHhhcch--------HHHH
Confidence            22 2344578999999999999999987643222  25678888888999999999998887765432        2345


Q ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHhhhcHHHH
Q 006898          439 ALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPV  518 (626)
Q Consensus       439 p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~  518 (626)
                      +.+..++.+.+..+|..+...++.+...      .....+.+...+.++++.+|..+..+++.+..        ...+|.
T Consensus       158 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~--------~~~~~~  223 (276)
T d1oyza_         158 PLLINLLKDPNGDVRNWAAFAININKYD------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--------KRVLSV  223 (276)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHTCC------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC--------GGGHHH
T ss_pred             HHHHHhcccccchhhhhHHHHHHhhhcc------ccccchhhhhhhhhhhhhhhhhhccccchhhh--------hhhHHH
Confidence            6677888999999999888776654321      13356667778899999999999999987642        345677


Q ss_pred             HhhhCCCCCchHHHHHHHHHHHHHhhhccchhhhcccchHHhhhccCCCcccccccccCchhHHHHHHHH
Q 006898          519 VINASKDRVPNIKFNVAKVLQSLIPIVDQSVSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALN  588 (626)
Q Consensus       519 l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al~  588 (626)
                      |...+.|  ++||..++++|+.+..        +..+|.|...+.+++|.+||.         +|.++|+
T Consensus       224 L~~~l~d--~~vr~~a~~aL~~ig~--------~~~~~~L~~~l~~~~d~~vr~---------~A~~~L~  274 (276)
T d1oyza_         224 LCDELKK--NTVYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIIT---------SAIDKLK  274 (276)
T ss_dssp             HHHHHTS--SSCCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHH---------HHHHHHT
T ss_pred             HHHHhCC--hHHHHHHHHHHHHcCC--------HHHHHHHHHHHccCCCHHHHH---------HHHHHHc
Confidence            7777765  4699999999998742        357788872345566889999         7777764

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.19  E-value=1.9e-07  Score=102.81  Aligned_cols=540  Identities=11%  Similarity=0.043  Sum_probs=291.4

Q ss_pred             CccHHHHHHHHhhHHHHHHhh---------ChHhhhhhhcccccc-ccCCchHHHHHHHHHHhccccccCCcchhhcchH
Q 006898           20 NDDIQLRLNSIRRLSTIARAL---------GEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP   89 (626)
Q Consensus        20 s~d~~~r~~a~~~l~~i~~~~---------~~~~~~~~l~~~l~~-~~~~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~~   89 (626)
                      +.+..+|..|+-.+++.....         -++..+..+...+.+ +.+++..+|..++.+++.++.+- .++.|+.+++
T Consensus        48 ~~~~~iR~~A~i~lKn~i~~~W~~~~~~~~i~~e~k~~Ik~~ll~~l~~~~~~ir~~l~~~i~~I~~~d-~p~~Wp~ll~  126 (959)
T d1wa5c_          48 NLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSD-FPDRWPTLLS  126 (959)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH-STTTCTTHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh-CccccHHHHH
Confidence            346789999998888765432         112223333333333 23567789999999999987753 2567999999


Q ss_pred             HHhhhhcCcchHHHHHHHHHHHHHHhhcCh----hh-------HHHhHHHHHHHHh-------c-CCccchh--------
Q 006898           90 PLETLCTVEETCVRDKAVESLCRIGSQMRE----SD-------LVDWYIPLVKRLA-------A-GEWFTAR--------  142 (626)
Q Consensus        90 ~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~----~~-------~~~~l~~~l~~l~-------~-~~~~~~r--------  142 (626)
                      .+...+++++...+..+..++..+++.+..    +.       ..+.+.+.+..+.       . .......        
T Consensus       127 ~l~~~l~s~~~~~~~~~L~~l~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~  206 (959)
T d1wa5c_         127 DLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVL  206 (959)
T ss_dssp             HHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence            999988888888899999999999876532    11       1112222222221       1 1111110        


Q ss_pred             HHHhhHhHHh-cCCCCh---HHHHHHHHHHHHhcCCCC---------------HHHHHHHHHhHHHHHHhhCc--cchhh
Q 006898          143 VSACGLFHIA-YPSAPD---ILKTELRSIYTQLCQDDM---------------PMVRRSAASNLGKFAATVEP--AHLKT  201 (626)
Q Consensus       143 ~~a~~~l~~~-~~~~~~---~~~~~l~~~l~~l~~d~~---------------~~vR~~a~~~l~~l~~~~~~--~~~~~  201 (626)
                      .....++... ....+.   +....+...+...+....               ..+|...+..+..+.+..+.  ..+.+
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~  286 (959)
T d1wa5c_         207 LVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMIN  286 (959)
T ss_dssp             HHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhcccccccCchhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            0111122111 112222   223444455544443211               25777788888777766543  12223


Q ss_pred             hHHHHHHHhhc-----CCchhHHHHHHHHHHHhhcccCc------hhhhh-----hhHHHHHH-----------------
Q 006898          202 DIMSIFEDLTQ-----DDQDSVRLLAVEGCAALGKLLEP------QDCVA-----HILPVIVN-----------------  248 (626)
Q Consensus       202 ~ll~~l~~l~~-----d~~~~vr~~a~~~l~~l~~~~~~------~~~~~-----~i~~~l~~-----------------  248 (626)
                      .+++.+.+.+.     ...+.+...++..+..+.+....      .....     .+.|.+.-                 
T Consensus       287 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~i~~~li~~~~~~~~~d~e~~~~dp~~~~~  366 (959)
T d1wa5c_         287 EFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIR  366 (959)
T ss_dssp             HHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHhcCCHHHHHHHhcchHHHHH
Confidence            33333333321     22345666667766665543221      11111     12222210                 


Q ss_pred             --hcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhc------CCChHHHHHHHHHhHHHHHHhhCh-------
Q 006898          249 --FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL------RDNEAEVRIAAAGKVTKFCRILNP-------  313 (626)
Q Consensus       249 --~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l------~d~~~~vr~~a~~~l~~l~~~~~~-------  313 (626)
                        .-.+..+..|.++...+..++...+... ...+.+.+...+      .+.++..+.++...++.+....+.       
T Consensus       367 ~~~~~~~~~~~r~~a~~ll~~l~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~  445 (959)
T d1wa5c_         367 RDLEGSDTDTRRRACTDFLKELKEKNEVLV-TNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSS  445 (959)
T ss_dssp             HHHHC----CHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCC
T ss_pred             HHhhhcccccHHHHHHHHHHHHHHhccccc-hHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhc
Confidence              0011223467788888888877654321 122333333332      234578888888888877642210       


Q ss_pred             -------H-HHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHH
Q 006898          314 -------E-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV  385 (626)
Q Consensus       314 -------~-~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~  385 (626)
                             . .+.+.+.|.+ ....++...+|..++..++..+.....+ ....+++.+..++.|++..||..|+.++..+
T Consensus       446 ~~~~~~~~~~l~~~v~~~l-~~~~~~~~~lr~~~~~~i~~~~~~~~~~-~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~  523 (959)
T d1wa5c_         446 TNNLLNVVDFFTKEIAPDL-TSNNIPHIILRVDAIKYIYTFRNQLTKA-QLIELMPILATFLQTDEYVVYTYAAITIEKI  523 (959)
T ss_dssp             BCTTCCHHHHHHHHTHHHH-HCSSCSCHHHHHHHHHHHHHTGGGSCHH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHHH-ccCCCchHHHHHHHHHHHHHHHhhccHH-HHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence                   0 1122222322 2234566789999999999988876654 4567899999999999999999999999998


Q ss_pred             Hhhhch----------hh---HHhhHHHHHHHHhcCCC--hH---HHHHHHHHHHHHHHhhChhh--HHHHHHHHHHH--
Q 006898          386 NQVIGI----------DL---LSQSLLPAIVELAEDRH--WR---VRLAIIEYIPLLASQLGVGF--FDDKLGALCMQ--  443 (626)
Q Consensus       386 ~~~~~~----------~~---~~~~i~~~l~~~~~~~~--~~---~r~~~~~~l~~l~~~~~~~~--~~~~l~p~l~~--  443 (626)
                      ......          +.   +.+.++..+...+.+..  ..   ....++.++..+...++...  +.+.+++.+..  
T Consensus       524 ~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~  603 (959)
T d1wa5c_         524 LTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIV  603 (959)
T ss_dssp             TTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHH
T ss_pred             HHhhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            764321          11   12345555555543322  11   12346677777776665432  23344444433  


Q ss_pred             --HhcC-CchHHHHHHHHHHHHHHHHhChHH---HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccCh--HHhhhcH
Q 006898          444 --WLQD-KVYSIRDAAANNLKRLAEEFGPEW---AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS--EITCSRL  515 (626)
Q Consensus       444 --~l~d-~~~~VR~~a~~~l~~l~~~~~~~~---~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~--~~~~~~~  515 (626)
                        ..++ .+...+....++++.+....+++.   ..+.++|.+...+..........+...+..+....+.  +.+. .+
T Consensus       604 ~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~l  682 (959)
T d1wa5c_         604 TIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIK-PL  682 (959)
T ss_dssp             HHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTG-GG
T ss_pred             HHHhcCccchHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCCccHHHH-HH
Confidence              3333 345677788899999988766542   3366788887777666555666777777766654331  1222 33


Q ss_pred             HHHHhh-hCCCCCchHHHHHHHHHHHHHhhhccc-hhhhcccchHHhhhccCC
Q 006898          516 LPVVIN-ASKDRVPNIKFNVAKVLQSLIPIVDQS-VSTFSVSPFSFMLYLNVN  566 (626)
Q Consensus       516 l~~l~~-~l~d~~~~vR~~a~~~l~~i~~~~~~~-~~~~~i~~~l~~~l~~d~  566 (626)
                      ++.+.. .+.+.. .........+..+....+.. .....++..+. .+..+.
T Consensus       683 ~~~l~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~-~~l~~~  733 (959)
T d1wa5c_         683 AQPLLAPNVWELK-GNIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQ-RLIASK  733 (959)
T ss_dssp             HHHHTSGGGGCCT-TTHHHHHHHHHHHHHHHGGGCSCSHHHHHHHH-HHHTCT
T ss_pred             HHHHhhHHHHHHh-hhHHHHHHHHHHHHHhCHHhhcchHHHHHHHH-HHHCCC
Confidence            444443 333333 33345555565554443221 11123444555 444443

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.16  E-value=2e-12  Score=114.40  Aligned_cols=183  Identities=22%  Similarity=0.228  Sum_probs=129.9

Q ss_pred             HhcCCCCHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHh
Q 006898          170 QLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNF  249 (626)
Q Consensus       170 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~  249 (626)
                      ..+.|+.++||..+++.       .+        +..+..+++|+++.||..+...|+       .        +.+..+
T Consensus        49 ~~l~~p~~e~Ra~Aa~~-------a~--------~~~L~~Ll~D~d~~VR~~AA~~Lp-------~--------~~L~~L   98 (233)
T d1lrva_          49 QYLADPFWERRAIAVRY-------SP--------VEALTPLIRDSDEVVRRAVAYRLP-------R--------EQLSAL   98 (233)
T ss_dssp             GGTTCSSHHHHHHHHTT-------SC--------GGGGGGGTTCSSHHHHHHHHTTSC-------S--------GGGGGT
T ss_pred             HHhcCCcHHHHHHHHhc-------CC--------HHHHHHHhcCCCHHHHHHHHHHcC-------H--------HHHHHH
Confidence            46789999999777642       11        134556889999999998875542       1        245667


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhcc
Q 006898          250 SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS  329 (626)
Q Consensus       250 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~  329 (626)
                      ..|+++.||..++..+.               .+.+..+++|+++.||..+...+       +        .+.+..+++
T Consensus        99 ~~D~d~~VR~~aa~~l~---------------~~~L~~Ll~D~d~~VR~~aa~~~-------~--------~~~L~~L~~  148 (233)
T d1lrva_          99 MFDEDREVRITVADRLP---------------LEQLEQMAADRDYLVRAYVVQRI-------P--------PGRLFRFMR  148 (233)
T ss_dssp             TTCSCHHHHHHHHHHSC---------------TGGGGGGTTCSSHHHHHHHHHHS-------C--------GGGGGGTTT
T ss_pred             hcCCChhHHHHHHhccC---------------HHHHHHHhcCCCHHHHHHHHhcc-------c--------hhHHHHHhc
Confidence            88999999988876431               12355678899999999887642       1        133456778


Q ss_pred             CCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHhcCC
Q 006898          330 DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR  409 (626)
Q Consensus       330 d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~  409 (626)
                      |+++.||.+++..+       +        .+.+..+++|+++.||..++..++       .        +.+..+.+|+
T Consensus       149 D~d~~VR~~aA~~~-------~--------~~~L~~l~~D~d~~VR~~aa~~L~-------~--------~~L~~l~~D~  198 (233)
T d1lrva_         149 DEDRQVRKLVAKRL-------P--------EESLGLMTQDPEPEVRRIVASRLR-------G--------DDLLELLHDP  198 (233)
T ss_dssp             CSCHHHHHHHHHHS-------C--------GGGGGGSTTCSSHHHHHHHHHHCC-------G--------GGGGGGGGCS
T ss_pred             CCCHHHHHHHHHhc-------C--------HHHHHHHccCCCHHHHHHHHHhcC-------c--------HHHHHHHhCC
Confidence            99999999887532       1        134567788999999999887663       1        3455678899


Q ss_pred             ChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHH
Q 006898          410 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAAN  458 (626)
Q Consensus       410 ~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~  458 (626)
                      +|.+|.++.+.+       +         +.++..+.|+++.||..+..
T Consensus       199 d~~VR~aaae~~-------~---------~~ll~~L~D~d~~VR~aA~~  231 (233)
T d1lrva_         199 DWTVRLAAVEHA-------S---------LEALRELDEPDPEVRLAIAG  231 (233)
T ss_dssp             SHHHHHHHHHHS-------C---------HHHHHHCCCCCHHHHHHHHC
T ss_pred             CHHHHHHHHHhc-------c---------HHHHHHhCCCCHHHHHHHHH
Confidence            999999886532       2         23556789999999998864

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.15  E-value=3.4e-07  Score=100.81  Aligned_cols=529  Identities=9%  Similarity=0.020  Sum_probs=295.1

Q ss_pred             HHHHHHHhc-CccHHHHHHHHhhHHHHHHhhChHhhhhhhccccccccCCchHHHHHHHHHHhcccccc-CC--------
Q 006898           11 IAVLIDELK-NDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYV-GG--------   80 (626)
Q Consensus        11 i~~l~~~l~-s~d~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~l~~~~~~~~~vr~~~~~~l~~~~~~~-~~--------   80 (626)
                      +..+.+-+. |.+++.|..|-+.|.++ .. .|+ ....|+..+.. .+.+..+|..|+-.+.+.++.. +.        
T Consensus         4 ~~~l~~ll~~s~~~~~~k~Ae~~L~~~-~~-~p~-f~~~L~~i~~~-~~~~~~iR~~A~i~lKn~i~~~W~~~~~~~~i~   79 (959)
T d1wa5c_           4 LETVAKFLAESVIASTAKTSERNLRQL-ET-QDG-FGLTLLHVIAS-TNLPLSTRLAGALFFKNFIKRKWVDENGNHLLP   79 (959)
T ss_dssp             HHHHHHHHHHTTSGGGHHHHHHHHHHH-HT-STT-HHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSC
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHH-Hc-CCC-HHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHhcccccccCCCC
Confidence            444444433 67777899999999886 32 332 22233333321 2235689999999988776531 10        


Q ss_pred             cchhhcchHHHhhhhcCcchHHHHHHHHHHHHHHhhcChhhHHHhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCCh--
Q 006898           81 VEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD--  158 (626)
Q Consensus        81 ~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~--  158 (626)
                      ++....+-..+...+.+++..+|...+.++..|+..-.|+ -++.++|.+.+.+++++...+..+..++..+......  
T Consensus        80 ~e~k~~Ik~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~-~Wp~ll~~l~~~l~s~~~~~~~~~L~~l~~i~k~~~~~~  158 (959)
T d1wa5c_          80 ANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPD-RWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLF  158 (959)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTT-TCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSC
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc-ccHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence            1112334344444556678889999999999999865553 4678999999999888888888999999998877532  


Q ss_pred             ---H-------HHHHHHHHHHHhc-------CCCC--HHHHHHHHHhHHHHHHhh----C---cc---chhhhHHHHHHH
Q 006898          159 ---I-------LKTELRSIYTQLC-------QDDM--PMVRRSAASNLGKFAATV----E---PA---HLKTDIMSIFED  209 (626)
Q Consensus       159 ---~-------~~~~l~~~l~~l~-------~d~~--~~vR~~a~~~l~~l~~~~----~---~~---~~~~~ll~~l~~  209 (626)
                         .       ..+.+.+.+..++       ....  ...-......+....+.+    .   ++   .....+...+..
T Consensus       159 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (959)
T d1wa5c_         159 RSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHK  238 (959)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHH
T ss_pred             cchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence               1       1122223232221       1111  110011111111111111    0   11   111223333444


Q ss_pred             hhcCCc---------------hhHHHHHHHHHHHhhcccCc--hhhhhhhHHHHHHhc----CC-CCHHHHHHHHHHHHH
Q 006898          210 LTQDDQ---------------DSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFS----QD-KSWRVRYMVANQLYE  267 (626)
Q Consensus       210 l~~d~~---------------~~vr~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~----~d-~~~~vR~~a~~~l~~  267 (626)
                      ++....               ..++......+..+.+..+.  ..+.+.+++.+...+    .+ ....+...+...+..
T Consensus       239 ~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~  318 (959)
T d1wa5c_         239 YLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTA  318 (959)
T ss_dssp             HHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHH
T ss_pred             HHhcccccccCchhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence            332210               13566666666666655443  122333333332222    22 234444455555544


Q ss_pred             HHHHhC------CCccccchH-HHHHHhcC-----------C------------ChHHHHHHHHHhHHHHHHhhChHHHH
Q 006898          268 LCEAVG------PEPTRMDLV-PAYVRLLR-----------D------------NEAEVRIAAAGKVTKFCRILNPELAI  317 (626)
Q Consensus       268 l~~~~~------~~~~~~~l~-~~l~~~l~-----------d------------~~~~vr~~a~~~l~~l~~~~~~~~~~  317 (626)
                      +.....      .......++ +.+...+.           |            .....|.++...+..++...+.. ..
T Consensus       319 ~~~~~~~~~~~~~~~~l~~i~~~li~~~~~~~~~d~e~~~~dp~~~~~~~~~~~~~~~~r~~a~~ll~~l~~~~~~~-~~  397 (959)
T d1wa5c_         319 VTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVL-VT  397 (959)
T ss_dssp             HHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHH-HH
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHHhcCCHHHHHHHhcchHHHHHHHhhhcccccHHHHHHHHHHHHHHhcccc-ch
Confidence            432211      000001111 11111110           1            11235667777777777655433 22


Q ss_pred             HhhHHHHHHhc------cCCCHHHHHHHHHHHHhhhhhhc-----------HHHHHHhHHHHHHHhh---cCCCHHHHHH
Q 006898          318 QHILPCVKELS------SDSSQHVRSALASVIMGMAPLLG-----------KDATIEQLLPIFLSLL---KDEFPDVRLN  377 (626)
Q Consensus       318 ~~l~~~l~~l~------~d~~~~vr~~~~~~l~~l~~~~~-----------~~~~~~~l~~~l~~~l---~d~~~~vr~~  377 (626)
                      +.+.+.+.+.+      .+.+|..|.+++..++.+....+           ...+.+.+.+.+...+   .+..+.+|..
T Consensus       398 ~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~lr~~  477 (959)
T d1wa5c_         398 NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVD  477 (959)
T ss_dssp             HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHH
T ss_pred             HHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHHHHHHccCCCchHHHHHH
Confidence            33444443332      24679999999888887653211           0012223333333333   4566889999


Q ss_pred             HHHhhHHHHhhhchhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhCh----------hh---HHHHHHHHHHHH
Q 006898          378 IISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV----------GF---FDDKLGALCMQW  444 (626)
Q Consensus       378 a~~~L~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~----------~~---~~~~l~p~l~~~  444 (626)
                      ++..++.+.....++.+ ..+++.+.+.+++++..+|..++.++..+......          +.   +.+.++..++..
T Consensus       478 ~~~~i~~~~~~~~~~~~-~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~  556 (959)
T d1wa5c_         478 AIKYIYTFRNQLTKAQL-IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIAL  556 (959)
T ss_dssp             HHHHHHHTGGGSCHHHH-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccHHHH-HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHHHHH
Confidence            99999999888776654 67899999999999999999999999998764321          11   223445555555


Q ss_pred             hcCCchH-----HHHHHHHHHHHHHHHhChHH--HhhhhHHHHHhh----hcC-CChHHHHHHHHHHHHhccccChH---
Q 006898          445 LQDKVYS-----IRDAAANNLKRLAEEFGPEW--AMQHITPQVLEM----INN-PHYLYRMTILRAISLLAPVMGSE---  509 (626)
Q Consensus       445 l~d~~~~-----VR~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~----l~~-~~~~vR~~a~~~l~~i~~~~~~~---  509 (626)
                      +.+....     +......++..++..++...  ....+++.+...    .++ .+...+..+.++++.+....+++   
T Consensus       557 l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~  636 (959)
T d1wa5c_         557 ILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLP  636 (959)
T ss_dssp             HHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHH
T ss_pred             HHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHH
Confidence            5443322     23457788888888776542  224444444433    333 35678888889999988776654   


Q ss_pred             HhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhc
Q 006898          510 ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  546 (626)
Q Consensus       510 ~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~  546 (626)
                      .+.+.++|.+...++.........+...+..+....+
T Consensus       637 ~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~~  673 (959)
T d1wa5c_         637 LLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSA  673 (959)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCC
Confidence            3457788998888877777788888888887776654

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.15  E-value=2.3e-12  Score=113.97  Aligned_cols=184  Identities=20%  Similarity=0.275  Sum_probs=129.8

Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHH
Q 006898          247 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKE  326 (626)
Q Consensus       247 ~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~  326 (626)
                      ..++.|+.|+||..++..       .        -+..+..+++|++++||..+++.|+       .        +.+..
T Consensus        48 ~~~l~~p~~e~Ra~Aa~~-------a--------~~~~L~~Ll~D~d~~VR~~AA~~Lp-------~--------~~L~~   97 (233)
T d1lrva_          48 VQYLADPFWERRAIAVRY-------S--------PVEALTPLIRDSDEVVRRAVAYRLP-------R--------EQLSA   97 (233)
T ss_dssp             GGGTTCSSHHHHHHHHTT-------S--------CGGGGGGGTTCSSHHHHHHHHTTSC-------S--------GGGGG
T ss_pred             HHHhcCCcHHHHHHHHhc-------C--------CHHHHHHHhcCCCHHHHHHHHHHcC-------H--------HHHHH
Confidence            346789999999776531       1        1234567889999999999876543       1        34567


Q ss_pred             hccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHHHHHHh
Q 006898          327 LSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA  406 (626)
Q Consensus       327 l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~l~~~~  406 (626)
                      ++.|+++.||..++..+.               .+.+..+++|+++.||..++..+.       .        +.+..+.
T Consensus        98 L~~D~d~~VR~~aa~~l~---------------~~~L~~Ll~D~d~~VR~~aa~~~~-------~--------~~L~~L~  147 (233)
T d1lrva_          98 LMFDEDREVRITVADRLP---------------LEQLEQMAADRDYLVRAYVVQRIP-------P--------GRLFRFM  147 (233)
T ss_dssp             TTTCSCHHHHHHHHHHSC---------------TGGGGGGTTCSSHHHHHHHHHHSC-------G--------GGGGGTT
T ss_pred             HhcCCChhHHHHHHhccC---------------HHHHHHHhcCCCHHHHHHHHhccc-------h--------hHHHHHh
Confidence            788999999988876431               123556788999999998876531       1        1234567


Q ss_pred             cCCChHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhChHHHhhhhHHHHHhhhcC
Q 006898          407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN  486 (626)
Q Consensus       407 ~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~~  486 (626)
                      +|+++.+|..+...       .+.        +.+..+++|+++.||..++..+       +.        +.+..+++|
T Consensus       148 ~D~d~~VR~~aA~~-------~~~--------~~L~~l~~D~d~~VR~~aa~~L-------~~--------~~L~~l~~D  197 (233)
T d1lrva_         148 RDEDRQVRKLVAKR-------LPE--------ESLGLMTQDPEPEVRRIVASRL-------RG--------DDLLELLHD  197 (233)
T ss_dssp             TCSCHHHHHHHHHH-------SCG--------GGGGGSTTCSSHHHHHHHHHHC-------CG--------GGGGGGGGC
T ss_pred             cCCCHHHHHHHHHh-------cCH--------HHHHHHccCCCHHHHHHHHHhc-------Cc--------HHHHHHHhC
Confidence            88999999877653       222        3466778999999999888654       22        356778899


Q ss_pred             CChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHHHHHH
Q 006898          487 PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAK  536 (626)
Q Consensus       487 ~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~  536 (626)
                      ++|.||..+++.+       +         +.++..+.|+++.||..+++
T Consensus       198 ~d~~VR~aaae~~-------~---------~~ll~~L~D~d~~VR~aA~~  231 (233)
T d1lrva_         198 PDWTVRLAAVEHA-------S---------LEALRELDEPDPEVRLAIAG  231 (233)
T ss_dssp             SSHHHHHHHHHHS-------C---------HHHHHHCCCCCHHHHHHHHC
T ss_pred             CCHHHHHHHHHhc-------c---------HHHHHHhCCCCHHHHHHHHH
Confidence            9999999887532       1         23456678999999998864

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=5.9e-08  Score=96.52  Aligned_cols=147  Identities=12%  Similarity=0.059  Sum_probs=99.2

Q ss_pred             hHHHHHHHHhc-CCChHHHHHHHHHHHHHHHhhChhh--------HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Q 006898          397 SLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVGF--------FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF  467 (626)
Q Consensus       397 ~i~~~l~~~~~-~~~~~~r~~~~~~l~~l~~~~~~~~--------~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~  467 (626)
                      .+++.+..+.. ..+..++..+...+..+........        .....+|.+..++.+++..+|..++.+++.++..-
T Consensus       283 ~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~  362 (457)
T d1xm9a1         283 DAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP  362 (457)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred             cHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhCh
Confidence            45566655553 4456677777777766654322111        01235788999999999999999999999997543


Q ss_pred             Ch-HHHhhhhHHHHHhhhcC------CChHHHHHHHHHHHHhccccChH---HhhhcHHHHHhhhCCCC-CchHHHHHHH
Q 006898          468 GP-EWAMQHITPQVLEMINN------PHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDR-VPNIKFNVAK  536 (626)
Q Consensus       468 ~~-~~~~~~il~~l~~~l~~------~~~~vR~~a~~~l~~i~~~~~~~---~~~~~~l~~l~~~l~d~-~~~vR~~a~~  536 (626)
                      .. .......+|.+..++.+      .+..++..++.++.+++...+..   ......++.|..++.+. ++.++..|+.
T Consensus       363 ~~~~~i~~~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~  442 (457)
T d1xm9a1         363 LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARL  442 (457)
T ss_dssp             GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHhhHHHHHHHHhccccCcCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHH
Confidence            22 12334567777776643      24569999999999987543321   23345778888887654 5689999999


Q ss_pred             HHHHHHh
Q 006898          537 VLQSLIP  543 (626)
Q Consensus       537 ~l~~i~~  543 (626)
                      +|..+..
T Consensus       443 ~L~~L~~  449 (457)
T d1xm9a1         443 LLSDMWS  449 (457)
T ss_dssp             HHHTTSS
T ss_pred             HHHHHHc
Confidence            9998854

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=2.7e-08  Score=99.10  Aligned_cols=146  Identities=10%  Similarity=0.061  Sum_probs=99.2

Q ss_pred             HHHHHHHhhc-CCCHHHHHHHHHhhHHHHhhhch-------h-hHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC
Q 006898          359 LLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGI-------D-LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG  429 (626)
Q Consensus       359 l~~~l~~~l~-d~~~~vr~~a~~~L~~~~~~~~~-------~-~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~  429 (626)
                      .++.+...+. ..++.++..+..++..+......       . .....++|.+.++++++++.+|..++.++..++....
T Consensus       284 ~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~  363 (457)
T d1xm9a1         284 AIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL  363 (457)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChh
Confidence            4455555443 45677777777777776532211       0 1123568899999999999999999999999875432


Q ss_pred             -hhhHHHHHHHHHHHHhcC------CchHHHHHHHHHHHHHHHHhChH---HHhhhhHHHHHhhhcC-CChHHHHHHHHH
Q 006898          430 -VGFFDDKLGALCMQWLQD------KVYSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLEMINN-PHYLYRMTILRA  498 (626)
Q Consensus       430 -~~~~~~~l~p~l~~~l~d------~~~~VR~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~l~~-~~~~vR~~a~~~  498 (626)
                       ...+.+..+|.+...+.+      ...+|+..++.++..+.......   ......++.|.+++.+ ++..++.+|+.+
T Consensus       364 ~~~~i~~~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~  443 (457)
T d1xm9a1         364 LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLL  443 (457)
T ss_dssp             GHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHhccccCcCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHH
Confidence             222334556777776643      34679999999999987543322   1224568889888765 578899999999


Q ss_pred             HHHhcc
Q 006898          499 ISLLAP  504 (626)
Q Consensus       499 l~~i~~  504 (626)
                      +.++..
T Consensus       444 L~~L~~  449 (457)
T d1xm9a1         444 LSDMWS  449 (457)
T ss_dssp             HHTTSS
T ss_pred             HHHHHc
Confidence            998864

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.91  E-value=5.8e-11  Score=93.15  Aligned_cols=107  Identities=21%  Similarity=0.197  Sum_probs=52.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccC
Q 006898          251 QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSD  330 (626)
Q Consensus       251 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d  330 (626)
                      +|+++.||..++.+|+.+    |     +..++.++..++|+++.||..++.+|+.+..        +..+|.+..+++|
T Consensus         2 ~D~~~~VR~~A~~aL~~~----~-----~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~--------~~~~~~L~~~l~d   64 (111)
T d1te4a_           2 ADENKWVRRDVSTALSRM----G-----DEAFEPLLESLSNEDWRIRGAAAWIIGNFQD--------ERAVEPLIKLLED   64 (111)
T ss_dssp             CSSCCCSSSSCCSSTTSC----S-----STTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHh----C-----HHHHHHHHHHHcCCCHHHHHHHHHHHHhcch--------hhhHHHHHhhhcc
Confidence            344555555555544432    1     1223444555555555555555555544321        2234445555555


Q ss_pred             CCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhh
Q 006898          331 SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKL  382 (626)
Q Consensus       331 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L  382 (626)
                      +++.||.+++.+++.++.        +...|.+..+++|+++.||..|+.+|
T Consensus        65 ~~~~VR~~a~~aL~~i~~--------~~~~~~L~~ll~d~~~~vr~~A~~aL  108 (111)
T d1te4a_          65 DSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYL  108 (111)
T ss_dssp             CCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred             chhHHHHHHHHHHHHhCc--------cchHHHHHHHHcCCCHHHHHHHHHHH
Confidence            555566555555555431        23344455555555555555555554

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.89  E-value=8.1e-11  Score=92.28  Aligned_cols=107  Identities=17%  Similarity=0.271  Sum_probs=57.5

Q ss_pred             cCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCC
Q 006898          212 QDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD  291 (626)
Q Consensus       212 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d  291 (626)
                      +|+++.||..|+.+|+.+.    +     ..++.+...++|+++.||..++.+++.+.        ....+|.+..+++|
T Consensus         2 ~D~~~~VR~~A~~aL~~~~----~-----~~~~~L~~~l~d~~~~vR~~a~~~L~~~~--------~~~~~~~L~~~l~d   64 (111)
T d1te4a_           2 ADENKWVRRDVSTALSRMG----D-----EAFEPLLESLSNEDWRIRGAAAWIIGNFQ--------DERAVEPLIKLLED   64 (111)
T ss_dssp             CSSCCCSSSSCCSSTTSCS----S-----TTHHHHHHGGGCSCHHHHHHHHHHHGGGC--------SHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHhC----H-----HHHHHHHHHHcCCCHHHHHHHHHHHHhcc--------hhhhHHHHHhhhcc
Confidence            4555555555555554322    1     12334445555666666666666555332        23345556666666


Q ss_pred             ChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHH
Q 006898          292 NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVI  343 (626)
Q Consensus       292 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l  343 (626)
                      +++.||.+++.+|+.+..        +...|.+..+++|+++.||..++.+|
T Consensus        65 ~~~~VR~~a~~aL~~i~~--------~~~~~~L~~ll~d~~~~vr~~A~~aL  108 (111)
T d1te4a_          65 DSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYL  108 (111)
T ss_dssp             CCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred             chhHHHHHHHHHHHHhCc--------cchHHHHHHHHcCCCHHHHHHHHHHH
Confidence            666666666666665532        23355555566666666666665544

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=2.5e-07  Score=84.68  Aligned_cols=142  Identities=10%  Similarity=0.021  Sum_probs=100.9

Q ss_pred             HHhcCCChHHHHHHHHHHHHHHHhhC---hhhHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHHhChH---HHhhhh
Q 006898          404 ELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWL-QDKVYSIRDAAANNLKRLAEEFGPE---WAMQHI  476 (626)
Q Consensus       404 ~~~~~~~~~~r~~~~~~l~~l~~~~~---~~~~~~~l~p~l~~~l-~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~i  476 (626)
                      .++++++..+|..++.+++.++....   ........+|.+..++ .+.++.+|..++.+++.++......   ......
T Consensus        66 ~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~g  145 (264)
T d1xqra1          66 RYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDG  145 (264)
T ss_dssp             TTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhh
Confidence            34556666666666666666664321   1122334677777777 4677889999999998887653322   234566


Q ss_pred             HHHHHhhhcCCChHHHHHHHHHHHHhccccCh---HHhhhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhh
Q 006898          477 TPQVLEMINNPHYLYRMTILRAISLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV  545 (626)
Q Consensus       477 l~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~---~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~  545 (626)
                      ++.+.+++.+++..++..++.++++++...+.   .......+|.+..+++++++.+|..++.+|+.+....
T Consensus       146 i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~  217 (264)
T d1xqra1         146 FSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF  217 (264)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC
Confidence            88888888899999999999999988764332   1234457899999999999999999999999987543

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.4e-07  Score=86.47  Aligned_cols=135  Identities=18%  Similarity=0.112  Sum_probs=67.3

Q ss_pred             CcchHHHHHHHHHHHHHHhhcChhh-HH--HhHHHHHHHHhcCCccchhHHHhhHhHHhcCCCChH----HHHHHHHHHH
Q 006898           97 VEETCVRDKAVESLCRIGSQMRESD-LV--DWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIYT  169 (626)
Q Consensus        97 ~~~~~vR~~a~~~l~~i~~~~~~~~-~~--~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~----~~~~l~~~l~  169 (626)
                      ..+.+.|..|+.+|..+++...... +.  +.+.+++..++++++..+|..|+..++.++.+.+..    .....++.+.
T Consensus        28 ~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv  107 (264)
T d1xqra1          28 AADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL  107 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence            3455677777777777776543211 11  113333444444555555555555555555443321    1123444455


Q ss_pred             HhcC-CCCHHHHHHHHHhHHHHHHhhCcc---chhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhc
Q 006898          170 QLCQ-DDMPMVRRSAASNLGKFAATVEPA---HLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGK  231 (626)
Q Consensus       170 ~l~~-d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~  231 (626)
                      .++. ++++.+|..++.++..++...++.   ......++.+..++.+++..++..++.++..++.
T Consensus       108 ~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~  173 (264)
T d1xqra1         108 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLV  173 (264)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred             HHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHh
Confidence            5442 445566666666666665433221   1122345555555555555666655555555543

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=98.07  E-value=0.00043  Score=64.20  Aligned_cols=225  Identities=10%  Similarity=0.032  Sum_probs=121.2

Q ss_pred             CHHHHHHHHHhHHHHHHhhCccchhhhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCc-hhhhhhhHHHHHHhcCCCC
Q 006898          176 MPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEP-QDCVAHILPVIVNFSQDKS  254 (626)
Q Consensus       176 ~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~i~~~l~~~~~d~~  254 (626)
                      .+..|+....++...    |.    ..-+..+.+++.+++-..- .+...+..++....+ ......+.+.+..--...+
T Consensus        70 ~~~~r~~~lDal~~~----GT----~~a~~~i~~~I~~~~ls~~-ea~~~l~~l~~~~~Pt~~~l~~~~~l~~~~~~~~~  140 (336)
T d1lsha1          70 QKDYRRWILDAVPAM----AT----SEALLFLKRTLASEQLTSA-EATQIVASTLSNQQATRESLSYARELLNTSFIRNR  140 (336)
T ss_dssp             SHHHHHHHHHHHHHH----CS----HHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHTC
T ss_pred             ChhHHHHHHHHHHHh----CC----HHHHHHHHHHHHcCCCCHH-HHHHHHHHHhccCCCCHHHHHHHHHHHcCcccccc
Confidence            355666555555443    22    2233444555544432221 233344444433222 3333334433322222247


Q ss_pred             HHHHHHHHHHHHHHHHHhCC--CccccchHHHHH----HhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhc
Q 006898          255 WRVRYMVANQLYELCEAVGP--EPTRMDLVPAYV----RLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS  328 (626)
Q Consensus       255 ~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~----~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~  328 (626)
                      +.+|..+.-++|.++...-.  ....+.+++.+.    +..+..+.+.+..++++||.++.        ...++.+...+
T Consensus       141 ~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--------p~~i~~l~~~l  212 (336)
T d1lsha1         141 PILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--------PNSIKKIQRFL  212 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--------GGGHHHHHTTS
T ss_pred             hhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC--------HhHHHHHHHHh
Confidence            88999999999998876422  222233444443    33445555666677888887753        23445555544


Q ss_pred             cC-------CCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhhchhhHHhhHHHH
Q 006898          329 SD-------SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA  401 (626)
Q Consensus       329 ~d-------~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~~~~~i~~~  401 (626)
                      .+       ....+|.+++.++..+.... .....+.+++++.+  .+.++++|.+|+..|-...   +.    ...+..
T Consensus       213 ~~~~~~~~~~~~~vR~aAi~Alr~~~~~~-p~~v~~~l~~i~~n--~~e~~EvRiaA~~~lm~t~---P~----~~~l~~  282 (336)
T d1lsha1         213 PGQGKSLDEYSTRVQAEAIMALRNIAKRD-PRKVQEIVLPIFLN--VAIKSELRIRSCIVFFESK---PS----VALVSM  282 (336)
T ss_dssp             TTSSSCCCCSCHHHHHHHHHTTTTGGGTC-HHHHHHHHHHHHHC--TTSCHHHHHHHHHHHHHTC---CC----HHHHHH
T ss_pred             cccccccccccHHHHHHHHHHHHHhhhcC-cHHHHHHHHHHHcC--CCCChHHHHHHHHHHHhcC---CC----HHHHHH
Confidence            32       35789999999998886543 22233444444443  3456899999988775531   11    234445


Q ss_pred             HHHHh-cCCChHHHHHHHHHHHHHHHh
Q 006898          402 IVELA-EDRHWRVRLAIIEYIPLLASQ  427 (626)
Q Consensus       402 l~~~~-~~~~~~~r~~~~~~l~~l~~~  427 (626)
                      +...+ .+++.+|+......+..+++.
T Consensus       283 i~~~l~~E~~~QV~sfv~S~l~~la~s  309 (336)
T d1lsha1         283 VAVRLRREPNLQVASFVYSQMRSLSRS  309 (336)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHHHHhC
Confidence            54443 566777777666666655543

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=97.50  E-value=0.0022  Score=59.28  Aligned_cols=176  Identities=13%  Similarity=0.032  Sum_probs=111.8

Q ss_pred             hHHHHHHHHhcC----CChHHHHHHHHHHHHHHHhhC------hhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Q 006898          397 SLLPAIVELAED----RHWRVRLAIIEYIPLLASQLG------VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE  466 (626)
Q Consensus       397 ~i~~~l~~~~~~----~~~~~r~~~~~~l~~l~~~~~------~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~  466 (626)
                      .++..+.+++++    .++.+|..+.-+++.++....      ...+.+.+...+.......+.+-+..+.++||.+.  
T Consensus       123 ~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g--  200 (336)
T d1lsha1         123 ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG--  200 (336)
T ss_dssp             HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccC--
Confidence            345555555543    467788888888888776432      12233445555556666667777777888887764  


Q ss_pred             hChHHHhhhhHHHHHhhhcC-------CChHHHHHHHHHHHHhccccChHHhhhcHHHHHhhhCCCCCchHHHHHHHHHH
Q 006898          467 FGPEWAMQHITPQVLEMINN-------PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQ  539 (626)
Q Consensus       467 ~~~~~~~~~il~~l~~~l~~-------~~~~vR~~a~~~l~~i~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~  539 (626)
                        .    ...++.+...+.+       ....+|..|++++..+.... +....+.+++.+..  .+.++++|..|...|-
T Consensus       201 --~----p~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~-p~~v~~~l~~i~~n--~~e~~EvRiaA~~~lm  271 (336)
T d1lsha1         201 --Q----PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-PRKVQEIVLPIFLN--VAIKSELRIRSCIVFF  271 (336)
T ss_dssp             --C----GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-HHHHHHHHHHHHHC--TTSCHHHHHHHHHHHH
T ss_pred             --C----HhHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcC-cHHHHHHHHHHHcC--CCCChHHHHHHHHHHH
Confidence              1    2356677766543       25679999999999887643 44455666666664  4566889999988886


Q ss_pred             HHHhhhccchhhhcccchHHhhhccCCCcccccccccCchhHHHHHHHHHHHHHhhcCCccccc
Q 006898          540 SLIPIVDQSVSTFSVSPFSFMLYLNVNNFNVGFIFAAFPLVLFSCLALNYCHRWWRKQSVPVWL  603 (626)
Q Consensus       540 ~i~~~~~~~~~~~~i~~~l~~~l~~d~d~~vr~~~~~~~~~~~a~~al~~~~~~~~~~~~~~~~  603 (626)
                      +....       ...+..+...+..|++..|+.         |....|..+    .+...|.+.
T Consensus       272 ~t~P~-------~~~l~~i~~~l~~E~~~QV~s---------fv~S~l~~l----a~s~~P~~~  315 (336)
T d1lsha1         272 ESKPS-------VALVSMVAVRLRREPNLQVAS---------FVYSQMRSL----SRSSNPEFR  315 (336)
T ss_dssp             HTCCC-------HHHHHHHHHHHTTCSCHHHHH---------HHHHHHHHH----TTCCSGGGH
T ss_pred             hcCCC-------HHHHHHHHHHHHhCcHHHHHH---------HHHHHHHHH----HhCCCcchH
Confidence            63211       223344442566788888888         666666544    344667666

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.31  Score=42.73  Aligned_cols=210  Identities=12%  Similarity=0.134  Sum_probs=128.7

Q ss_pred             HHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhh-ch-----hhH--HhhHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 006898          354 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GI-----DLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLA  425 (626)
Q Consensus       354 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~-~~-----~~~--~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~  425 (626)
                      .+...++..+...|..-+.+.|+.+...++.+...- |.     +.+  ...++..+....++++...-...  .+-..+
T Consensus        65 ~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~eiAl~~G~--mLREci  142 (330)
T d1upka_          65 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGI--MLRECI  142 (330)
T ss_dssp             HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHH--HHHHHH
T ss_pred             HHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcchhhhhhH--HHHHHH
Confidence            344566667777777777777777777766665421 11     111  13567777777776653221111  111110


Q ss_pred             Hh--hChhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhCh---HH---HhhhhHHHHHhhhcCCChHHHHHHHH
Q 006898          426 SQ--LGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EW---AMQHITPQVLEMINNPHYLYRMTILR  497 (626)
Q Consensus       426 ~~--~~~~~~~~~l~p~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~---~~---~~~~il~~l~~~l~~~~~~vR~~a~~  497 (626)
                      +.  +..-...+.-+..++.+.+-++.+|-.-|..++..+......   ++   ..+.++....+++.++|+-+|..++.
T Consensus       143 k~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlK  222 (330)
T d1upka_         143 RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK  222 (330)
T ss_dssp             TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred             hhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            00  000011111233466788889999999999988887754321   11   12567777888899999999999999


Q ss_pred             HHHHhccccChHHh------hhcHHHHHhhhCCCCCchHHHHHHHHHHHHHhhhccc--------hhhhcccchHHhhhc
Q 006898          498 AISLLAPVMGSEIT------CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--------VSTFSVSPFSFMLYL  563 (626)
Q Consensus       498 ~l~~i~~~~~~~~~------~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~--------~~~~~i~~~l~~~l~  563 (626)
                      .+|.+...-....+      ...-+..++.+++|+..+++..|.+++..+.-.-..+        .-...++..|. .+.
T Consensus       223 LLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~Nr~kLl~fl~-~f~  301 (330)
T d1upka_         223 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLS-KFQ  301 (330)
T ss_dssp             HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHH-HTT
T ss_pred             HHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCHHHHHHHHHhHHHHHHHHH-hCC
Confidence            99998743222211      2456788889999999999999999988876542211        12345555666 566


Q ss_pred             cCC
Q 006898          564 NVN  566 (626)
Q Consensus       564 ~d~  566 (626)
                      +|.
T Consensus       302 ~d~  304 (330)
T d1upka_         302 NDR  304 (330)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            665

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.85  E-value=3.7  Score=35.78  Aligned_cols=207  Identities=9%  Similarity=0.069  Sum_probs=130.4

Q ss_pred             HhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhh-cHH----HH---HHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhhh
Q 006898          318 QHILPCVKELSSDSSQHVRSALASVIMGMAPLL-GKD----AT---IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI  389 (626)
Q Consensus       318 ~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~-~~~----~~---~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~  389 (626)
                      ..++..+...+..-++..|..+...+..+...- |..    .+   .+.++..+..+..+++...-.+.  -|.++++.-
T Consensus        68 ~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~eiAl~~G~--mLREcik~e  145 (330)
T d1upka_          68 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGI--MLRECIRHE  145 (330)
T ss_dssp             HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHH--HHHHHHTSH
T ss_pred             hChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcchhhhhhH--HHHHHHhhH
Confidence            556666666667778888888888887776432 111    11   23467777777776654433222  233332221


Q ss_pred             --chhhHHhhHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhC---hhhHH---HHHHHHHHHHhcCCchHHHHHHHHHHH
Q 006898          390 --GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFD---DKLGALCMQWLQDKVYSIRDAAANNLK  461 (626)
Q Consensus       390 --~~~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~---~~~~~---~~l~p~l~~~l~d~~~~VR~~a~~~l~  461 (626)
                        ..-.+...-+..+.+..+.++..+-..+...+..+.....   .+++.   +.+...+..++.+++.-.|+.+.+.||
T Consensus       146 ~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKLLg  225 (330)
T d1upka_         146 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG  225 (330)
T ss_dssp             HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence              0001112223455566778888888888888887765432   12221   345666778999999999999999999


Q ss_pred             HHHHHhChHH------HhhhhHHHHHhhhcCCChHHHHHHHHHHHHhccccC-hHHh-------hhcHHHHHhhhCCCC
Q 006898          462 RLAEEFGPEW------AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG-SEIT-------CSRLLPVVINASKDR  526 (626)
Q Consensus       462 ~l~~~~~~~~------~~~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~-~~~~-------~~~~l~~l~~~l~d~  526 (626)
                      .+...-....      ....-+..++.++.|++..++..|.+.+.-++..-. +..+       .++++.+|..+..|.
T Consensus       226 elLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~Nr~kLl~fl~~f~~d~  304 (330)
T d1upka_         226 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQNDR  304 (330)
T ss_dssp             HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTTTC
T ss_pred             HHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCHHHHHHHHHhHHHHHHHHHhCCCCC
Confidence            9975322111      124557788889999999999999999998875322 1211       245777777777775

>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: BC3264-like
domain: Hypothetical protein EF3068
species: Enterococcus faecalis [TaxId: 1351]

Probab=88.65  E-value=5.5  Score=32.77  Aligned_cols=136  Identities=7%  Similarity=-0.025  Sum_probs=88.9

Q ss_pred             hhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchhhhhhhHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhCCCcccc
Q 006898          201 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEPTRM  279 (626)
Q Consensus       201 ~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d-~~~~vR~~a~~~l~~l~~~~~~~~~~~  279 (626)
                      +.+...+..+.+.+.-+.|..|+..+........+     ..++.+..++.+ .+|.+--..+..++......     ..
T Consensus        49 ~~~~~l~~~L~~~~~~E~r~~a~~ll~~~~~~~~~-----~~l~~~~~~~~~~~~Wd~vD~~~~~i~~~~~~~-----~~  118 (213)
T d2b6ca1          49 EKLCQEIEAYYQKTEREYQYVAIDLALQNVQRFSL-----EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALH-----LT  118 (213)
T ss_dssp             HHHHHHHHHHHTSSSHHHHHHHHHHHHHTGGGCCH-----HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHS-----GG
T ss_pred             HHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccCH-----HHHHHHHHHHccCccHHHHHHHHHHHHHHHHHh-----hh
Confidence            45566666777777788999898888776654433     234555555544 46776666655554322211     34


Q ss_pred             chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhChHHHHHhhHHHHHHhccCCCHHHHHHHHHHHHhhhhhh
Q 006898          280 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL  350 (626)
Q Consensus       280 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~  350 (626)
                      ...+.+....++++.-+|..++-+.-.......    .+.++..+..+..|++..||.++..+|..++...
T Consensus       119 ~~~~~l~~w~~s~~~w~rR~aiv~~l~~~~~~~----~~~~~~~~~~~~~d~e~~i~kAigW~Lre~~k~~  185 (213)
T d2b6ca1         119 ELPTIFALFYGAENFWNRRVALNLQLMLKEKTN----QDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTN  185 (213)
T ss_dssp             GHHHHHHHHTTCSSHHHHHHHHHTTTTCGGGCC----HHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTC
T ss_pred             hHHHHHHHHHhCCCHHHHHHHHHHHHHHHHccc----HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHC
Confidence            566778888888887777776554433322222    2445677778889999999999999999988653

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.17  E-value=4.9  Score=30.54  Aligned_cols=75  Identities=16%  Similarity=0.138  Sum_probs=57.1

Q ss_pred             hhhHHHHHhhhcCCChHHHHHHHHHHHHhccccChHHh----hhcHHHHHhhhCCC------CCchHHHHHHHHHHHHHh
Q 006898          474 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKD------RVPNIKFNVAKVLQSLIP  543 (626)
Q Consensus       474 ~~il~~l~~~l~~~~~~vR~~a~~~l~~i~~~~~~~~~----~~~~l~~l~~~l~d------~~~~vR~~a~~~l~~i~~  543 (626)
                      ...+..|.+-++++++.+...++..+..+++.||..+.    ...++..+.+++.+      ..+.||..++..+..+..
T Consensus        37 k~a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~  116 (143)
T d1mhqa_          37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV  116 (143)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            34555566667888999999999999999999987653    34566777777653      456799999999999988


Q ss_pred             hhccc
Q 006898          544 IVDQS  548 (626)
Q Consensus       544 ~~~~~  548 (626)
                      .+++.
T Consensus       117 ~f~~~  121 (143)
T d1mhqa_         117 WFPED  121 (143)
T ss_dssp             HCTTC
T ss_pred             HcCCC
Confidence            77654

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=86.37  E-value=2.8  Score=32.14  Aligned_cols=74  Identities=8%  Similarity=0.055  Sum_probs=43.6

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccch----hhhHHHHHHHhhcCC-chhHHHHHHHHHHHhhcccCc
Q 006898          162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHL----KTDIMSIFEDLTQDD-QDSVRLLAVEGCAALGKLLEP  235 (626)
Q Consensus       162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~ll~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~  235 (626)
                      .+....+.+-+++.++.+...++..+..++.+.|....    ...+++.+..+++.. ...|+..++..+...+..++.
T Consensus        41 k~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~  119 (145)
T d1dvpa1          41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRS  119 (145)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC
Confidence            34445555666777788888888888877777665211    123444444444332 446666666666666665544

>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: BC3264-like
domain: Hypothetical protein EF3068
species: Enterococcus faecalis [TaxId: 1351]

Probab=85.85  E-value=4.3  Score=33.44  Aligned_cols=135  Identities=9%  Similarity=0.013  Sum_probs=84.7

Q ss_pred             hhhHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHHhhChHHHHH
Q 006898          240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILNPELAIQ  318 (626)
Q Consensus       240 ~~i~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~  318 (626)
                      +.+...+..+..++.-+.|..++..+.......     ....++.+..++.. +++++.......++..... .+    +
T Consensus        49 ~~~~~l~~~L~~~~~~E~r~~a~~ll~~~~~~~-----~~~~l~~~~~~~~~~~~Wd~vD~~~~~i~~~~~~-~~----~  118 (213)
T d2b6ca1          49 EKLCQEIEAYYQKTEREYQYVAIDLALQNVQRF-----SLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVAL-HL----T  118 (213)
T ss_dssp             HHHHHHHHHHHTSSSHHHHHHHHHHHHHTGGGC-----CHHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHH-SG----G
T ss_pred             HHHHHHHHHHHcCchHHHHHHHHHHHHHHHhcc-----CHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHH-hh----h
Confidence            345556666777788888888877766544321     23445666666654 3477777655555443321 11    2


Q ss_pred             hhHHHHHHhccCCCHHHHHHHHHHHHhhhhhhcHHHHHHhHHHHHHHhhcCCCHHHHHHHHHhhHHHHhh
Q 006898          319 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV  388 (626)
Q Consensus       319 ~l~~~l~~l~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~L~~~~~~  388 (626)
                      ...+.+.....+.+..+|++++-+.-..    ..+...+.+...+...+.|++.-||.+....|..+...
T Consensus       119 ~~~~~l~~w~~s~~~w~rR~aiv~~l~~----~~~~~~~~~~~~~~~~~~d~e~~i~kAigW~Lre~~k~  184 (213)
T d2b6ca1         119 ELPTIFALFYGAENFWNRRVALNLQLML----KEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT  184 (213)
T ss_dssp             GHHHHHHHHTTCSSHHHHHHHHHTTTTC----GGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT
T ss_pred             hHHHHHHHHHhCCCHHHHHHHHHHHHHH----HHcccHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence            3456777788888877777764332111    12222345677788888999999999999999988755

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=81.14  E-value=7.8  Score=29.45  Aligned_cols=85  Identities=6%  Similarity=-0.036  Sum_probs=55.6

Q ss_pred             hhHHHHHHHhhcCCchhHHHHHHHHHHHhhcccCchh----hhhhhHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHhCCC
Q 006898          201 TDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQD----CVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGPE  275 (626)
Q Consensus       201 ~~ll~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~i~~~l~~~~-~d~~~~vR~~a~~~l~~l~~~~~~~  275 (626)
                      ...+..+.+-+++.++.+...|+..+..+.+.+|..-    ....++..+.++. ..++..||..+...+...+..++.+
T Consensus        41 k~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~  120 (145)
T d1dvpa1          41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRSS  120 (145)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence            4567777788888999999999999999888877621    1222334443333 3346678888888888877777654


Q ss_pred             ccccchHHHH
Q 006898          276 PTRMDLVPAY  285 (626)
Q Consensus       276 ~~~~~l~~~l  285 (626)
                      .....+...+
T Consensus       121 ~~~~~i~~~y  130 (145)
T d1dvpa1         121 DKYQAIKDTM  130 (145)
T ss_dssp             SSCCHHHHHH
T ss_pred             ccchHHHHHH
Confidence            4333333333

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.77  E-value=9.7  Score=28.81  Aligned_cols=74  Identities=9%  Similarity=-0.057  Sum_probs=53.4

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHhHHHHHHhhCccch----hhhHHHHHHHhhcC------CchhHHHHHHHHHHHhhc
Q 006898          162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHL----KTDIMSIFEDLTQD------DQDSVRLLAVEGCAALGK  231 (626)
Q Consensus       162 ~~l~~~l~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~ll~~l~~l~~d------~~~~vr~~a~~~l~~l~~  231 (626)
                      .+.+..+.+-+.+.++.+...++..+..++.+.|+...    ...++..+..++.+      .+..|+..++..+...+.
T Consensus        37 k~a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~  116 (143)
T d1mhqa_          37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV  116 (143)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            45555666667888899999999999999988876322    23466666666653      356788888888888877


Q ss_pred             ccCc
Q 006898          232 LLEP  235 (626)
Q Consensus       232 ~~~~  235 (626)
                      .++.
T Consensus       117 ~f~~  120 (143)
T d1mhqa_         117 WFPE  120 (143)
T ss_dssp             HCTT
T ss_pred             HcCC
Confidence            7654