Citrus Sinensis ID: 006905
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 626 | 2.2.26 [Sep-21-2011] | |||||||
| Q9ZPH9 | 633 | Probable methyltransferas | yes | no | 0.971 | 0.960 | 0.645 | 0.0 | |
| O80844 | 631 | Probable methyltransferas | no | no | 0.956 | 0.949 | 0.657 | 0.0 | |
| Q9SZX8 | 633 | Probable methyltransferas | no | no | 0.939 | 0.928 | 0.583 | 0.0 | |
| Q9C884 | 639 | Probable methyltransferas | no | no | 0.968 | 0.948 | 0.561 | 0.0 | |
| B9DFI7 | 616 | Probable methyltransferas | no | no | 0.974 | 0.990 | 0.565 | 0.0 | |
| Q94EJ6 | 621 | Probable methyltransferas | no | no | 0.958 | 0.966 | 0.555 | 0.0 | |
| Q9ZW75 | 611 | Probable methyltransferas | no | no | 0.822 | 0.842 | 0.529 | 1e-167 | |
| Q9C6S7 | 603 | Probable methyltransferas | no | no | 0.937 | 0.973 | 0.440 | 1e-150 | |
| Q94II3 | 600 | Probable methyltransferas | no | no | 0.837 | 0.873 | 0.461 | 1e-143 | |
| Q93W95 | 600 | Probable methyltransferas | no | no | 0.907 | 0.946 | 0.412 | 1e-136 |
| >sp|Q9ZPH9|PMTF_ARATH Probable methyltransferase PMT15 OS=Arabidopsis thaliana GN=At4g00750 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 867 bits (2240), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/618 (64%), Positives = 492/618 (79%), Gaps = 10/618 (1%)
Query: 13 RTNVYSLTLILFLCIFSYLFGLWQHGGPTPLLPATTSTTTVVDIACSTATATATAPKTID 72
+TN+Y + LI LC+ Y G+WQH G + ++ S + + C+ T ++
Sbjct: 19 QTNLYRVILIAILCVTFYFVGVWQHSG-RGISRSSISNHELTSVPCTFPHQTT---PILN 74
Query: 73 FTAHHVAA----TSSEAVMKTYPLCNISYSEYTPCQDGKRSLKFSRRRLIYRERHCPAKS 128
F + H A T ++A + P C + +SEYTPC+ RSL F R RLIYRERHCP K
Sbjct: 75 FASRHTAPDLPPTITDARVVQIPSCGVEFSEYTPCEFVNRSLNFPRERLIYRERHCPEKH 134
Query: 129 ELLKCRVPAPYGYRNPFAWPTSRDLVWYANVPHKELTVEKAVQNWIRYEGDRFRFPGGGT 188
E+++CR+PAPYGY PF WP SRD+ W+ANVPH ELTVEK QNW+RYE DRF FPGGGT
Sbjct: 135 EIVRCRIPAPYGYSLPFRWPESRDVAWFANVPHTELTVEKKNQNWVRYEKDRFLFPGGGT 194
Query: 189 MFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSRNIITMSFAPRDTHEAQ 248
MFP GADAYID+IG+LINL DGSIRTAIDTGCGVAS+GAYL+SRNI+TMSFAPRDTHEAQ
Sbjct: 195 MFPRGADAYIDEIGRLINLKDGSIRTAIDTGCGVASFGAYLMSRNIVTMSFAPRDTHEAQ 254
Query: 249 VQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGY 308
VQFALERGVPA+IGVLA+ RLP+P+RAFD+AHCSRCLIPW Q+ G YLIEVDRVLRPGGY
Sbjct: 255 VQFALERGVPAIIGVLASIRLPFPARAFDIAHCSRCLIPWGQYNGTYLIEVDRVLRPGGY 314
Query: 309 WILSGPPINWKKHARGWQRTKEDLNKEQTAIENVAKSLCWEKIKEKGDIAIWRKPINHLN 368
WILSGPPINW++H +GW+RT++DLN EQ+ IE VA+SLCW K+ ++ D+A+W+KP NH++
Sbjct: 315 WILSGPPINWQRHWKGWERTRDDLNSEQSQIERVARSLCWRKLVQREDLAVWQKPTNHVH 374
Query: 369 CKTNQKLSQNPPFCPVQDPDKAWYTQMGTCLTRLPEVSSD--RETAGGELAKWPQRLNAV 426
CK N+ PPFC P++ WYT++ TCLT LPEV+ +E AGG+LA+WP+RLNA+
Sbjct: 375 CKRNRIALGRPPFCHRTLPNQGWYTKLETCLTPLPEVTGSEIKEVAGGQLARWPERLNAL 434
Query: 427 PPRISKGTVKGITPEIFQQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAA 486
PPRI G+++GIT + F N+E W++R+SYYK + QL ++GRYRN LDMNAHLGGFA+A
Sbjct: 435 PPRIKSGSLEGITEDEFVSNTEKWQRRVSYYKKYDQQLAETGRYRNFLDMNAHLGGFASA 494
Query: 487 LIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYPRTYDLIHADSVFSLYK 546
L+D PVWVMNVVP EA +NTLGVIYERGL+GTY NWCEAMSTYPRTYD IHADSVFSLYK
Sbjct: 495 LVDDPVWVMNVVPVEASVNTLGVIYERGLIGTYQNWCEAMSTYPRTYDFIHADSVFSLYK 554
Query: 547 DRCETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQIVDHEDGPLEREKL 606
DRC+ EDILLEMDRILRP+G VI RDD+D L KVK+I DA++W+ +I DHE+GPLEREK+
Sbjct: 555 DRCDMEDILLEMDRILRPKGSVIIRDDIDVLTKVKKITDAMQWEGRIGDHENGPLEREKI 614
Query: 607 LFAVKLYWTAPAEETASE 624
LF VK YWTAPA + +S+
Sbjct: 615 LFLVKEYWTAPAPDQSSD 632
|
Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|O80844|PMTG_ARATH Probable methyltransferase PMT16 OS=Arabidopsis thaliana GN=At2g45750 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 860 bits (2221), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/614 (65%), Positives = 487/614 (79%), Gaps = 15/614 (2%)
Query: 13 RTNVYSLTLILFLCIFSYLFGLWQHGGPTPLLPATTSTTTVVDIACSTATATATAPKTID 72
+ N+Y +TL+ LCI SYL G+WQ+ P S T C T + K +D
Sbjct: 13 KANLYYVTLVALLCIASYLLGIWQNTAVNPRAAFDDSDGT----PCEGFT-RPNSTKDLD 67
Query: 73 FTAHHVAA----TSSEAVMKTYPLCNISYSEYTPCQDGKRSLKFSRRRLIYRERHCPAKS 128
F AHH + AV ++P C + SE+TPC+D KRSLKFSR RL YR+RHCP +
Sbjct: 68 FDAHHNIQDPPPVTETAV--SFPSCAAALSEHTPCEDAKRSLKFSRERLEYRQRHCPERE 125
Query: 129 ELLKCRVPAPYGYRNPFAWPTSRDLVWYANVPHKELTVEKAVQNWIRYEGDRFRFPGGGT 188
E+LKCR+PAPYGY+ PF WP SRD+ W+ANVPH ELTVEK QNW+RYE DRF FPGGGT
Sbjct: 126 EILKCRIPAPYGYKTPFRWPASRDVAWFANVPHTELTVEKKNQNWVRYENDRFWFPGGGT 185
Query: 189 MFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSRNIITMSFAPRDTHEAQ 248
MFP GADAYIDDIG+LI+L+DGSIRTAIDTGCGVAS+GAYLLSRNI TMSFAPRDTHEAQ
Sbjct: 186 MFPRGADAYIDDIGRLIDLSDGSIRTAIDTGCGVASFGAYLLSRNITTMSFAPRDTHEAQ 245
Query: 249 VQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGY 308
VQFALERGVPA+IG++A RLPYPSRAFD+AHCSRCLIPW Q G YL+EVDRVLRPGGY
Sbjct: 246 VQFALERGVPAMIGIMATIRLPYPSRAFDLAHCSRCLIPWGQNDGAYLMEVDRVLRPGGY 305
Query: 309 WILSGPPINWKKHARGWQRTKEDLNKEQTAIENVAKSLCWEKIKEKGDIAIWRKPINHLN 368
WILSGPPINW+K +GW+RT +DLN EQT IE VA+SLCW+K+ ++ D+AIW+KP NH++
Sbjct: 306 WILSGPPINWQKRWKGWERTMDDLNAEQTQIEQVARSLCWKKVVQRDDLAIWQKPFNHID 365
Query: 369 CKTNQKLSQNPPFC-PVQDPDKAWYTQMGTCLTRLPEVSSDRE---TAGGELAKWPQRLN 424
CK +++ +NP FC QDPD AWYT+M +CLT LPEV + AGG++ KWP RLN
Sbjct: 366 CKKTREVLKNPEFCRHDQDPDMAWYTKMDSCLTPLPEVDDAEDLKTVAGGKVEKWPARLN 425
Query: 425 AVPPRISKGTVKGITPEIFQQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFA 484
A+PPR++KG ++ ITPE F +N++LWK+R+SYYK ++ QLG++GRYRN++DMNA+LGGFA
Sbjct: 426 AIPPRVNKGALEEITPEAFLENTKLWKQRVSYYKKLDYQLGETGRYRNLVDMNAYLGGFA 485
Query: 485 AALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYPRTYDLIHADSVFSL 544
AAL D PVWVMNVVP EAK+NTLGVIYERGL+GTY NWCEAMSTYPRTYD IHADSVF+L
Sbjct: 486 AALADDPVWVMNVVPVEAKLNTLGVIYERGLIGTYQNWCEAMSTYPRTYDFIHADSVFTL 545
Query: 545 YKDRCETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQIVDHEDGPLERE 604
Y+ +CE E+ILLEMDRILRP GGVI RDDVD L+KVK + L+W+ +I DHE GP ERE
Sbjct: 546 YQGQCEPEEILLEMDRILRPGGGVIIRDDVDVLIKVKELTKGLEWEGRIADHEKGPHERE 605
Query: 605 KLLFAVKLYWTAPA 618
K+ +AVK YWT PA
Sbjct: 606 KIYYAVKQYWTVPA 619
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9SZX8|PMTH_ARATH Probable methyltransferase PMT17 OS=Arabidopsis thaliana GN=At4g10440 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/610 (58%), Positives = 459/610 (75%), Gaps = 22/610 (3%)
Query: 19 LTLILF---LCIFSYLFGLWQHGGPTPLLPATTSTTTVVDIACSTAT--------ATATA 67
LTLIL LCI Y+ G WQ A T +++ + C T + ++++
Sbjct: 19 LTLILGVSGLCILFYVLGAWQ---------ANTVPSSISKLGCETQSNPSSSSSSSSSSE 69
Query: 68 PKTIDFTAHH-VAATSSEAVMKTYPLCNISYSEYTPCQDGKRSLKFSRRRLIYRERHCPA 126
+DF +H+ + + +K + C +S SEYTPC+D +R +F R + YRERHCP
Sbjct: 70 SAELDFKSHNQIELKETNQTIKYFEPCELSLSEYTPCEDRQRGRRFDRNMMKYRERHCPV 129
Query: 127 KSELLKCRVPAPYGYRNPFAWPTSRDLVWYANVPHKELTVEKAVQNWIRYEGDRFRFPGG 186
K ELL C +P P Y+ PF WP SRD WY N+PHKEL+VEKAVQNWI+ EGDRFRFPGG
Sbjct: 130 KDELLYCLIPPPPNYKIPFKWPQSRDYAWYDNIPHKELSVEKAVQNWIQVEGDRFRFPGG 189
Query: 187 GTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSRNIITMSFAPRDTHE 246
GTMFP GADAYIDDI +LI L DG IRTAIDTGCGVAS+GAYLL R+I+ +SFAPRDTHE
Sbjct: 190 GTMFPRGADAYIDDIARLIPLTDGGIRTAIDTGCGVASFGAYLLKRDIMAVSFAPRDTHE 249
Query: 247 AQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPG 306
AQVQFALERGVPA+IG++ + RLPYP+RAFD+AHCSRCLIPW + G+YL+EVDRVLRPG
Sbjct: 250 AQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPWFKNDGLYLMEVDRVLRPG 309
Query: 307 GYWILSGPPINWKKHARGWQRTKEDLNKEQTAIENVAKSLCWEKIKEKGDIAIWRKPINH 366
GYWILSGPPINWK++ RGW+RT+EDL KEQ +IE+VAKSLCW+K+ EKGD++IW+KP+NH
Sbjct: 310 GYWILSGPPINWKQYWRGWERTEEDLKKEQDSIEDVAKSLCWKKVTEKGDLSIWQKPLNH 369
Query: 367 LNCKTNQKLSQNPPFCPVQDPDKAWYTQMGTCLTRLPEVSSDRETAGGELAKWPQRLNAV 426
+ CK ++ +++PP C + D AWY + TC+T LPE ++ ++AGG L WP R AV
Sbjct: 370 IECKKLKQNNKSPPICSSDNADSAWYKDLETCITPLPETNNPDDSAGGALEDWPDRAFAV 429
Query: 427 PPRISKGTVKGITPEIFQQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAA 486
PPRI +GT+ + E F++++E+WK+R+++YK + +L GR+RNI+DMNA LGGFAA+
Sbjct: 430 PPRIIRGTIPEMNAEKFREDNEVWKERIAHYKKIVPELSH-GRFRNIMDMNAFLGGFAAS 488
Query: 487 LIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYPRTYDLIHADSVFSLYK 546
++ +P WVMNVVP +A+ TLGVIYERGL+GTY +WCE STYPRTYD+IHA +FSLY+
Sbjct: 489 MLKYPSWVMNVVPVDAEKQTLGVIYERGLIGTYQDWCEGFSTYPRTYDMIHAGGLFSLYE 548
Query: 547 DRCETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQIVDHEDGPLEREKL 606
RC+ ILLEMDRILRPEG V+ RD+V+ L KV++I+ +KW+SQIVDHE GP EK+
Sbjct: 549 HRCDLTLILLEMDRILRPEGTVVLRDNVETLNKVEKIVKGMKWKSQIVDHEKGPFNPEKI 608
Query: 607 LFAVKLYWTA 616
L AVK YWT
Sbjct: 609 LVAVKTYWTG 618
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9C884|PMTI_ARATH Probable methyltransferase PMT18 OS=Arabidopsis thaliana GN=At1g33170 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 759 bits (1959), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/639 (56%), Positives = 466/639 (72%), Gaps = 33/639 (5%)
Query: 7 SKPSIIRTNVYSLTLILF---LCIFSYLFGLWQHGGPTPLLPATTSTTTVVDIACS---- 59
S S+ LT IL LCI SY+ G WQ T +P T+S+ + C
Sbjct: 6 SSHSLAEAKRKRLTWILCVSGLCILSYVLGSWQ----TNTVP-TSSSEAYSRMGCDETST 60
Query: 60 ------------------TATATATAPKTIDFTAHH-VAATSSEAVMKTYPLCNISYSEY 100
+++ +++ P +DF +HH + + +K + C++S SEY
Sbjct: 61 TTRAQTTQTQTNPSSDDTSSSLSSSEPVELDFESHHKLELKITNQTVKYFEPCDMSLSEY 120
Query: 101 TPCQDGKRSLKFSRRRLIYRERHCPAKSELLKCRVPAPYGYRNPFAWPTSRDLVWYANVP 160
TPC+D +R +F R + YRERHCP+K ELL C +P P Y+ PF WP SRD WY N+P
Sbjct: 121 TPCEDRERGRRFDRNMMKYRERHCPSKDELLYCLIPPPPNYKIPFKWPQSRDYAWYDNIP 180
Query: 161 HKELTVEKAVQNWIRYEGDRFRFPGGGTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGC 220
HKEL++EKA+QNWI+ EG+RFRFPGGGTMFP GADAYIDDI +LI L DG+IRTAIDTGC
Sbjct: 181 HKELSIEKAIQNWIQVEGERFRFPGGGTMFPRGADAYIDDIARLIPLTDGAIRTAIDTGC 240
Query: 221 GVASWGAYLLSRNIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAH 280
GVAS+GAYLL R+I+ MSFAPRDTHEAQVQFALERGVPA+IG++ + RLPYP+RAFD+AH
Sbjct: 241 GVASFGAYLLKRDIVAMSFAPRDTHEAQVQFALERGVPAIIGIMGSRRLPYPARAFDLAH 300
Query: 281 CSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPPINWKKHARGWQRTKEDLNKEQTAIE 340
CSRCLIPW Q G+YL EVDRVLRPGGYWILSGPPINWKK+ +GW+R++EDL +EQ +IE
Sbjct: 301 CSRCLIPWFQNDGLYLTEVDRVLRPGGYWILSGPPINWKKYWKGWERSQEDLKQEQDSIE 360
Query: 341 NVAKSLCWEKIKEKGDIAIWRKPINHLNCKTNQKLSQNPPFCPVQD-PDKAWYTQMGTCL 399
+ A+SLCW+K+ EKGD++IW+KPINH+ C +++ + PP C D PD AWY + +C+
Sbjct: 361 DAARSLCWKKVTEKGDLSIWQKPINHVECNKLKRVHKTPPLCSKSDLPDFAWYKDLESCV 420
Query: 400 TRLPEVSSDRETAGGELAKWPQRLNAVPPRISKGTVKGITPEIFQQNSELWKKRLSYYKT 459
T LPE +S E AGG L WP R AVPPRI GT+ I E F++++E+WK+R+SYYK
Sbjct: 421 TPLPEANSSDEFAGGALEDWPNRAFAVPPRIIGGTIPDINAEKFREDNEVWKERISYYKQ 480
Query: 460 MNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTY 519
+ +L + GR+RNI+DMNA+LGGFAAA++ +P WVMNVVP +A+ TLGVI+ERG +GTY
Sbjct: 481 IMPELSR-GRFRNIMDMNAYLGGFAAAMMKYPSWVMNVVPVDAEKQTLGVIFERGFIGTY 539
Query: 520 TNWCEAMSTYPRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDVDELVK 579
+WCE STYPRTYDLIHA +FS+Y++RC+ ILLEMDRILRPEG V+FRD V+ L K
Sbjct: 540 QDWCEGFSTYPRTYDLIHAGGLFSIYENRCDVTLILLEMDRILRPEGTVVFRDTVEMLTK 599
Query: 580 VKRIIDALKWQSQIVDHEDGPLEREKLLFAVKLYWTAPA 618
++ I + ++W+S+I+DHE GP EK+L AVK YWT P+
Sbjct: 600 IQSITNGMRWKSRILDHERGPFNPEKILLAVKSYWTGPS 638
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|B9DFI7|PMT2_ARATH Probable methyltransferase PMT2 OS=Arabidopsis thaliana GN=At1g26850 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/626 (56%), Positives = 440/626 (70%), Gaps = 16/626 (2%)
Query: 1 MAGPKPSKPSIIRTNVYSLTLILFLCIFSYLFGLWQHGGPTPLLPATTSTTTVVDIACST 60
MA S R++V + ++ LC F Y+ G WQ G + + +
Sbjct: 1 MALKSSSADGKTRSSV-QIFIVFSLCCFFYILGAWQRSG--------FGKGDSIALEMTN 51
Query: 61 ATATATAPKTIDFTAHHVAATS----SEAV-MKTYPLCNISYSEYTPCQDGKRSLKFSRR 115
+ A +++F HH +S SEA +K + C+ Y++YTPCQD +R++ F R
Sbjct: 52 SGADCNIVPSLNFETHHAGESSLVGASEAAKVKAFEPCDGRYTDYTPCQDQRRAMTFPRD 111
Query: 116 RLIYRERHCPAKSELLKCRVPAPYGYRNPFAWPTSRDLVWYANVPHKELTVEKAVQNWIR 175
+IYRERHC ++E L C +PAP GY PF+WP SRD V YAN P+K LTVEKA+QNWI+
Sbjct: 112 SMIYRERHCAPENEKLHCLIPAPKGYVTPFSWPKSRDYVPYANAPYKALTVEKAIQNWIQ 171
Query: 176 YEGDRFRFPGGGTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSRNII 235
YEGD FRFPGGGT FP GAD YID + +I + +G++RTA+DTGCGVASWGAYL SRN+
Sbjct: 172 YEGDVFRFPGGGTQFPQGADKYIDQLASVIPMENGTVRTALDTGCGVASWGAYLWSRNVR 231
Query: 236 TMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIY 295
MSFAPRD+HEAQVQFALERGVPA+IGVL +LPYP+RAFDMAHCSRCLIPW G+Y
Sbjct: 232 AMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPTRAFDMAHCSRCLIPWGANDGMY 291
Query: 296 LIEVDRVLRPGGYWILSGPPINWKKHARGWQRTKEDLNKEQTAIENVAKSLCWEKIKEKG 355
L+EVDRVLRPGGYWILSGPPINWK + + WQR KEDL +EQ IE AK LCWEK E G
Sbjct: 292 LMEVDRVLRPGGYWILSGPPINWKVNYKAWQRPKEDLQEEQRKIEEAAKLLCWEKKYEHG 351
Query: 356 DIAIWRKPINHLNCKTNQKLSQNPPFCPVQDPDKAWYTQMGTCLTRLPEVSSDRETAGGE 415
+IAIW+K +N C++ Q FC D D WY +M C+T PE SS E AGGE
Sbjct: 352 EIAIWQKRVNDEACRSRQD-DPRANFCKTDDTDDVWYKKMEACITPYPETSSSDEVAGGE 410
Query: 416 LAKWPQRLNAVPPRISKGTVKGITPEIFQQNSELWKKRLSYYKTMNNQLGQSGRYRNILD 475
L +P RLNAVPPRIS G++ G+T + ++ ++ WKK + YK +N+ L +GRYRNI+D
Sbjct: 411 LQAFPDRLNAVPPRISSGSISGVTVDAYEDDNRQWKKHVKAYKRINSLL-DTGRYRNIMD 469
Query: 476 MNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYPRTYDL 535
MNA GGFAAAL +WVMNVVP A+ N LGV+YERGL+G Y +WCEA STYPRTYDL
Sbjct: 470 MNAGFGGFAAALESQKLWVMNVVPTIAEKNRLGVVYERGLIGIYHDWCEAFSTYPRTYDL 529
Query: 536 IHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQIVD 595
IHA+ +FSLYK++C +DILLEMDRILRPEG VI RDDVD L+KVKRII ++W +++VD
Sbjct: 530 IHANHLFSLYKNKCNADDILLEMDRILRPEGAVIIRDDVDTLIKVKRIIAGMRWDAKLVD 589
Query: 596 HEDGPLEREKLLFAVKLYWTAPAEET 621
HEDGPL EK+L AVK YW + T
Sbjct: 590 HEDGPLVPEKVLIAVKQYWVTNSTST 615
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q94EJ6|PMTE_ARATH Probable methyltransferase PMT14 OS=Arabidopsis thaliana GN=At4g18030 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/618 (55%), Positives = 432/618 (69%), Gaps = 18/618 (2%)
Query: 3 GPKPSKPSIIRT-NVYSLTLILFLCIFSYLFGLWQHGGPTPLLPATTSTTTVVDIACSTA 61
G K + P R+ + SL +++ LC F YL G WQ G + + A T
Sbjct: 2 GSKHNPPGNNRSRSTLSLLVVVGLCCFFYLLGAWQKSG---FGKGDSIAMEITKQAQCTD 58
Query: 62 TATATAPKTIDFTAHHVAAT---SSEAVMKTYPLCNISYSEYTPCQDGKRSLKFSRRRLI 118
T +DF HH ++ ++ C++ +YTPCQ+ R++KF R +I
Sbjct: 59 IVT-----DLDFEPHHNTVKIPHKADPKPVSFKPCDVKLKDYTPCQEQDRAMKFPRENMI 113
Query: 119 YRERHCPAKSELLKCRVPAPYGYRNPFAWPTSRDLVWYANVPHKELTVEKAVQNWIRYEG 178
YRERHCP +E L+C VPAP GY PF WP SRD V YAN P K LTVEKA QNW++++G
Sbjct: 114 YRERHCPPDNEKLRCLVPAPKGYMTPFPWPKSRDYVHYANAPFKSLTVEKAGQNWVQFQG 173
Query: 179 DRFRFPGGGTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSRNIITMS 238
+ F+FPGGGTMFP GADAYI+++ +I + DGS+RTA+DTGCGVASWGAY+L RN++TMS
Sbjct: 174 NVFKFPGGGTMFPQGADAYIEELASVIPIKDGSVRTALDTGCGVASWGAYMLKRNVLTMS 233
Query: 239 FAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIE 298
FAPRD HEAQVQFALERGVPA+I VL + LPYP+RAFDMA CSRCLIPW G YL+E
Sbjct: 234 FAPRDNHEAQVQFALERGVPAIIAVLGSILLPYPARAFDMAQCSRCLIPWTANEGTYLME 293
Query: 299 VDRVLRPGGYWILSGPPINWKKHARGWQRTKEDLNKEQTAIENVAKSLCWEKIKEKGDIA 358
VDRVLRPGGYW+LSGPPINWK + W RTK +LN EQ IE +A+SLCWEK EKGDIA
Sbjct: 294 VDRVLRPGGYWVLSGPPINWKTWHKTWNRTKAELNAEQKRIEGIAESLCWEKKYEKGDIA 353
Query: 359 IWRKPINHLNCKTNQKLSQNPPFCPVQDPDKAWYTQMGTCLTRLPEVSSDRETAGGELAK 418
I+RK IN +C + + C +D D WY ++ TC+T P+VS++ E AGG+L K
Sbjct: 354 IFRKKINDRSCDRSTPVDT----CKRKDTDDVWYKEIETCVTPFPKVSNEEEVAGGKLKK 409
Query: 419 WPQRLNAVPPRISKGTVKGITPEIFQQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNA 478
+P+RL AVPP ISKG + G+ E +Q++ LWKKR++ YK +N +G S RYRN++DMNA
Sbjct: 410 FPERLFAVPPSISKGLINGVDEESYQEDINLWKKRVTGYKRINRLIG-STRYRNVMDMNA 468
Query: 479 HLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYPRTYDLIHA 538
LGGFAAAL WVMNV+P K NTL V+YERGL+G Y +WCE STYPRTYD IHA
Sbjct: 469 GLGGFAAALESPKSWVMNVIPTINK-NTLSVVYERGLIGIYHDWCEGFSTYPRTYDFIHA 527
Query: 539 DSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQIVDHED 598
VFSLY+ C+ EDILLE DRILRPEG VIFRD+VD L V++I+D ++W ++++DHED
Sbjct: 528 SGVFSLYQHSCKLEDILLETDRILRPEGIVIFRDEVDVLNDVRKIVDGMRWDTKLMDHED 587
Query: 599 GPLEREKLLFAVKLYWTA 616
GPL EK+L A K YW A
Sbjct: 588 GPLVPEKILVATKQYWVA 605
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9ZW75|PMTJ_ARATH Probable methyltransferase PMT19 OS=Arabidopsis thaliana GN=At2g43200 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 589 bits (1519), Expect = e-167, Method: Compositional matrix adjust.
Identities = 276/521 (52%), Positives = 357/521 (68%), Gaps = 6/521 (1%)
Query: 90 YPLCNISYSEYTPCQDGKRSLKFSRRRLIYRERHCP-AKSELLKCRVPAPYGYRNPFAWP 148
+PLC +++ Y PC D + ++S R RERHCP E +C VP P GY+ PF WP
Sbjct: 91 FPLCPKNFTNYLPCHDPSTARQYSIERHYRRERHCPDIAQEKFRCLVPKPTGYKTPFPWP 150
Query: 149 TSRDLVWYANVPHKELTVEKAVQNWIRYEGDRFRFPGGGTMFPNGADAYIDDIGKLINLN 208
SR W+ NVP K L K QNW+R EGDRF FPGGGT FP G Y+D I ++ L
Sbjct: 151 ESRKYAWFRNVPFKRLAELKKTQNWVRLEGDRFVFPGGGTSFPGGVKDYVDVILSVLPLA 210
Query: 209 DGSIRTAIDTGCGVASWGAYLLSRNIITMSFAPRDTHEAQVQFALERGVPALIGVLAAER 268
GSIRT +D GCGVAS+GA+LL+ I+TMS APRD HEAQVQFALERG+PA++GVL+ +
Sbjct: 211 SGSIRTVLDIGCGVASFGAFLLNYKILTMSIAPRDIHEAQVQFALERGLPAMLGVLSTYK 270
Query: 269 LPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPPINWKKHARGWQRT 328
LPYPSR+FDM HCSRCL+ W + G+YL+EVDRVLRP GYW+LSGPP+ + + +R
Sbjct: 271 LPYPSRSFDMVHCSRCLVNWTSYDGLYLMEVDRVLRPEGYWVLSGPPVASRVKFKNQKRD 330
Query: 329 KEDLNKEQTAIENVAKSLCWEKIKEKGDIAIWRKPINHLNCKTNQKLSQNPPFCPVQDPD 388
++L + + +V + LCWEKI E + IWRKP NHL C+ K + P C DPD
Sbjct: 331 SKELQNQMEKLNDVFRRLCWEKIAESYPVVIWRKPSNHLQCRKRLKALKFPGLCSSSDPD 390
Query: 389 KAWYTQMGTCLTRLPEVSSDRETAGGELAKWPQRLNAVPPRISKGTVKGITPEIFQQNSE 448
AWY +M C+T LP+V+ +T L WP+RLN V PR+ G+++G T F+ ++
Sbjct: 391 AAWYKEMEPCITPLPDVNDTNKTV---LKNWPERLNHV-PRMKTGSIQGTTIAGFKADTN 446
Query: 449 LWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLG 508
LW++R+ YY T L +G+YRN++DMNA LGGFAAALI +P+WVMNVVP + K NTLG
Sbjct: 447 LWQRRVLYYDTKFKFLS-NGKYRNVIDMNAGLGGFAAALIKYPMWVMNVVPFDLKPNTLG 505
Query: 509 VIYERGLVGTYTNWCEAMSTYPRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGV 568
V+Y+RGL+GTY NWCEA+STYPRTYDLIHA+ VFSLY D+C+ DILLEM RILRPEG V
Sbjct: 506 VVYDRGLIGTYMNWCEALSTYPRTYDLIHANGVFSLYLDKCDIVDILLEMQRILRPEGAV 565
Query: 569 IFRDDVDELVKVKRIIDALKWQSQIVDHEDGPLEREKLLFA 609
I RD D LVKVK I + ++W + ++ + +L
Sbjct: 566 IIRDRFDVLVKVKAITNQMRWNGTMYPEDNSVFDHGTILIV 606
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9C6S7|PMTK_ARATH Probable methyltransferase PMT20 OS=Arabidopsis thaliana GN=At1g31850 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 532 bits (1370), Expect = e-150, Method: Compositional matrix adjust.
Identities = 273/620 (44%), Positives = 389/620 (62%), Gaps = 33/620 (5%)
Query: 2 AGPKPSKPSIIRTNVYSLT-LILFLCIFS-YLFGLWQHGGPTPLLPATTSTTTVVDIACS 59
+G + S+P + + SLT L + C FS YL G++ + T TTT +
Sbjct: 3 SGKQSSQPEKGTSRILSLTVLFIAFCGFSFYLGGIFCSERDKIVAKDVTRTTTKAVASPK 62
Query: 60 TATATATAPKTIDFTAHHVAATSSEAVMKTYPLCNISYSEYTPCQDGKRSLKFSRRRLIY 119
TAT K++ F P C + +YTPC D KR K+ RL +
Sbjct: 63 EPTATPIQIKSVSF-----------------PECGSEFQDYTPCTDPKRWKKYGVHRLSF 105
Query: 120 RERHCPAKSELLKCRVPAPYGYRNPFAWPTSRDLVWYANVPHKELTVEKAVQNWIRYEGD 179
ERHCP E +C +P P GY+ P WP SR+ WY NVP+ + +K+ Q+W++ EGD
Sbjct: 106 LERHCPPVYEKNECLIPPPDGYKPPIRWPKSREQCWYRNVPYDWINKQKSNQHWLKKEGD 165
Query: 180 RFRFPGGGTMFPNGADAYIDDIGKLI-NLNDGSIRTAIDTGCGVASWGAYLLSRNIITMS 238
+F FPGGGTMFP G Y+D + LI + DG++RTAIDTGCGVASWG LL R I+++S
Sbjct: 166 KFHFPGGGTMFPRGVSHYVDLMQDLIPEMKDGTVRTAIDTGCGVASWGGDLLDRGILSLS 225
Query: 239 FAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIE 298
APRD HEAQVQFALERG+PA++G+++ +RLP+PS AFDMAHCSRCLIPW +FGGIYL+E
Sbjct: 226 LAPRDNHEAQVQFALERGIPAILGIISTQRLPFPSNAFDMAHCSRCLIPWTEFGGIYLLE 285
Query: 299 VDRVLRPGGYWILSGPPINWKKHARGWQRTKEDLNKEQTAIENVAKSLCWEKIKEKGDIA 358
+ R++RPGG+W+LSGPP+N+ + RGW T ED + ++++ S+C++K +K DIA
Sbjct: 286 IHRIVRPGGFWVLSGPPVNYNRRWRGWNTTMEDQKSDYNKLQSLLTSMCFKKYAQKDDIA 345
Query: 359 IWRKPINHLNC--KTNQKLSQNPPFCPVQ-DPDKAWYTQMGTCLTR-LPEVSSDRETAGG 414
+W+K ++ +C K + + PP C +PD AWYT + C+ P+V +++ G
Sbjct: 346 VWQK-LSDKSCYDKIAKNMEAYPPKCDDSIEPDSAWYTPLRPCVVAPTPKV---KKSGLG 401
Query: 415 ELAKWPQRLNAVPPRISKGTVKGITPEIFQQNSELWKKRLSYYKTMNNQLGQSGRYRNIL 474
+ KWP+RL+ P RI G V G + + + WK R+ +YK + LG + + RN++
Sbjct: 402 SIPKWPERLHVAPERI--GDVHGGSANSLKHDDGKWKNRVKHYKKVLPALG-TDKIRNVM 458
Query: 475 DMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYPRTYD 534
DMN GGF+AALI+ P+WVMNVV + + N+L V+++RGL+GTY +WCEA STYPRTYD
Sbjct: 459 DMNTVYGGFSAALIEDPIWVMNVVSSYSA-NSLPVVFDRGLIGTYHDWCEAFSTYPRTYD 517
Query: 535 LIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQIV 594
L+H DS+F+L RCE + ILLEMDRILRP G VI R+ + + + ++W +
Sbjct: 518 LLHLDSLFTLESHRCEMKYILLEMDRILRPSGYVIIRESSYFMDAITTLAKGIRWSCRRE 577
Query: 595 DHEDGPLEREKLLFAVKLYW 614
+ E ++ EK+L K W
Sbjct: 578 ETEYA-VKSEKILVCQKKLW 596
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q94II3|PMTL_ARATH Probable methyltransferase PMT21 OS=Arabidopsis thaliana GN=ERD3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 508 bits (1307), Expect = e-143, Method: Compositional matrix adjust.
Identities = 246/533 (46%), Positives = 346/533 (64%), Gaps = 9/533 (1%)
Query: 89 TYPLCNISYSEYTPCQDGKRSLKFSRRRLIYRERHCPAKSELLKCRVPAPYGYRNPFAWP 148
++ C+ Y +YTPC D ++ K+ RL + ERHCP + +C VP P GY+ P WP
Sbjct: 69 SFSECSSDYQDYTPCTDPRKWKKYGTHRLTFMERHCPPVFDRKQCLVPPPDGYKPPIRWP 128
Query: 149 TSRDLVWYANVPHKELTVEKAVQNWIRYEGDRFRFPGGGTMFPNGADAYIDDIGKLI-NL 207
S+D WY NVP+ + +K+ QNW+R EG++F FPGGGTMFP+G AY+D + LI +
Sbjct: 129 KSKDECWYRNVPYDWINKQKSNQNWLRKEGEKFIFPGGGTMFPHGVSAYVDLMQDLIPEM 188
Query: 208 NDGSIRTAIDTGCGVASWGAYLLSRNIITMSFAPRDTHEAQVQFALERGVPALIGVLAAE 267
DG+IRTAIDTGCGVASWG LL R I+T+S APRD HEAQVQFALERG+PA++G+++ +
Sbjct: 189 KDGTIRTAIDTGCGVASWGGDLLDRGILTVSLAPRDNHEAQVQFALERGIPAILGIISTQ 248
Query: 268 RLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPPINWKKHARGWQR 327
RLP+PS +FDMAHCSRCLIPW +FGG+YL+EV R+LRPGG+W+LSGPP+N++ +GW
Sbjct: 249 RLPFPSNSFDMAHCSRCLIPWTEFGGVYLLEVHRILRPGGFWVLSGPPVNYENRWKGWDT 308
Query: 328 TKEDLNKEQTAIENVAKSLCWEKIKEKGDIAIWRK-PINHLNCKTNQKLSQNPPFCPVQ- 385
T E+ ++ + S+C++ +K DIA+W+K P N K + PP C
Sbjct: 309 TIEEQRSNYEKLQELLSSMCFKMYAKKDDIAVWQKSPDNLCYNKLSNDPDAYPPKCDDSL 368
Query: 386 DPDKAWYTQMGTCLTRLPEVSSDRETAGGELAKWPQRLNAVPPRISKGTVKGITPEIFQQ 445
+PD AWYT + C+ +P ++T KWP+RL+ P RIS V G +F+
Sbjct: 369 EPDSAWYTPLRPCVV-VPSPKL-KKTDLESTPKWPERLHTTPERISD--VPGGNGNVFKH 424
Query: 446 NSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKIN 505
+ WK R +YK + +G S + RN++DMN GG AAAL++ P+WVMNVV + A N
Sbjct: 425 DDSKWKTRAKHYKKLLPAIG-SDKIRNVMDMNTAYGGLAAALVNDPLWVMNVVSSYA-AN 482
Query: 506 TLGVIYERGLVGTYTNWCEAMSTYPRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPE 565
TL V+++RGL+GTY +WCEA STYPRTYDL+H D +F+ RC+ + ++LEMDRILRP
Sbjct: 483 TLPVVFDRGLIGTYHDWCEAFSTYPRTYDLLHVDGLFTSESQRCDMKYVMLEMDRILRPS 542
Query: 566 GGVIFRDDVDELVKVKRIIDALKWQSQIVDHEDGPLEREKLLFAVKLYWTAPA 618
G I R+ + + L+W + E + L+ KL++++ A
Sbjct: 543 GYAIIRESSYFADSIASVAKELRWSCRKEQTESASANEKLLICQKKLWYSSNA 595
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q93W95|PMTD_ARATH Probable methyltransferase PMT13 OS=Arabidopsis thaliana GN=At4g00740 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 487 bits (1253), Expect = e-136, Method: Compositional matrix adjust.
Identities = 254/616 (41%), Positives = 352/616 (57%), Gaps = 48/616 (7%)
Query: 11 IIRTNVYSLTLILFLCIFSYLFGLWQHGGPTPLLPATTSTTTVVDIACSTATATATAPKT 70
I+ + + L+ F+ +F+ L G LL +T S
Sbjct: 22 IVTAAFFGIVLLFFILLFTPLGDSMAASGRQTLLLSTAS--------------------- 60
Query: 71 IDFTAHHVAATSSEAVMKTYPL--CNISYSEYTPCQDGKRSLKFSRRRLIYRERHCPAKS 128
D T EA P+ C + PC+D +R+ + SR YRERHCP
Sbjct: 61 -DPRQRQRLVTLVEAGQHLQPIEYCPAEAVAHMPCEDPRRNSQLSREMNFYRERHCPLPE 119
Query: 129 ELLKCRVPAPYGYRNPFAWPTSRDLVWYANVPHKELTVEKAVQNWIRYEGDRFRFPGGGT 188
E C +P P GY+ P WP S +W+AN+P+ ++ K Q W++ EG+ F FPGGGT
Sbjct: 120 ETPLCLIPPPSGYKIPVPWPESLHKIWHANMPYNKIADRKGHQGWMKREGEYFTFPGGGT 179
Query: 189 MFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSRNIITMSFAPRDTHEAQ 248
MFP GA YI+ + + I LN G++RTA+D GCGVAS+G LLS+ I+ +SFAPRD+H++Q
Sbjct: 180 MFPGGAGQYIEKLAQYIPLNGGTLRTALDMGCGVASFGGTLLSQGILALSFAPRDSHKSQ 239
Query: 249 VQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGY 308
+QFALERGVPA + +L RLP+P+ +FD+ HCSRCLIP+ + Y IEVDR+LRPGGY
Sbjct: 240 IQFALERGVPAFVAMLGTRRLPFPAYSFDLMHCSRCLIPFTAYNATYFIEVDRLLRPGGY 299
Query: 309 WILSGPPINWKKHARGWQRTKEDLNKEQTAIENVAKSLCWEKIKEKGDIAIWRKPINHLN 368
++SGPP+ W K +KE ++ VA++LC+E I G+ IW+KP+ +
Sbjct: 300 LVISGPPVQWPKQ-----------DKEWADLQAVARALCYELIAVDGNTVIWKKPVGD-S 347
Query: 369 CKTNQKLSQNPPFCPVQDPDKAWYTQMGTCLTRLPEVSSDRETAGGELAKWPQRLNAVPP 428
C +Q P AWY ++ C+TR V E A G ++KWP+RL VP
Sbjct: 348 CLPSQNEFGLELCDESVPPSDAWYFKLKRCVTRPSSVKG--EHALGTISKWPERLTKVP- 404
Query: 429 RISKGTVKGITPEIFQQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALI 488
S+ V ++F+ ++ W +R++YY+ N +S RN++DMNA GGFAA L
Sbjct: 405 --SRAIVMKNGLDVFEADARRWARRVAYYRDSLNLKLKSPTVRNVMDMNAFFGGFAATLA 462
Query: 489 DFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYPRTYDLIHADSVFSLY--- 545
PVWVMNV+PA + TL VIY+RGL+G Y +WCE STYPRTYD IH + SL
Sbjct: 463 SDPVWVMNVIPARKPL-TLDVIYDRGLIGVYHDWCEPFSTYPRTYDFIHVSGIESLIKRQ 521
Query: 546 ---KDRCETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQIVDHEDGPLE 602
K RC D+++EMDRILRPEG V+ RD + L KV R+ A++W S I + E
Sbjct: 522 DSSKSRCSLVDLMVEMDRILRPEGKVVIRDSPEVLDKVARMAHAVRWSSSIHEKEPESHG 581
Query: 603 REKLLFAVKLYWTAPA 618
REK+L A K W P+
Sbjct: 582 REKILIATKSLWKLPS 597
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 626 | ||||||
| 359490397 | 656 | PREDICTED: probable methyltransferase PM | 0.976 | 0.931 | 0.751 | 0.0 | |
| 255539529 | 649 | ATP binding protein, putative [Ricinus c | 0.990 | 0.955 | 0.741 | 0.0 | |
| 224134709 | 631 | predicted protein [Populus trichocarpa] | 0.964 | 0.957 | 0.721 | 0.0 | |
| 449446185 | 604 | PREDICTED: probable methyltransferase PM | 0.942 | 0.976 | 0.715 | 0.0 | |
| 224122430 | 563 | predicted protein [Populus trichocarpa] | 0.889 | 0.989 | 0.770 | 0.0 | |
| 356559857 | 632 | PREDICTED: probable methyltransferase PM | 0.968 | 0.958 | 0.706 | 0.0 | |
| 356529267 | 633 | PREDICTED: probable methyltransferase PM | 0.968 | 0.957 | 0.706 | 0.0 | |
| 357507093 | 638 | hypothetical protein MTR_7g076170 [Medic | 0.979 | 0.960 | 0.661 | 0.0 | |
| 255541466 | 627 | ATP binding protein, putative [Ricinus c | 0.953 | 0.952 | 0.684 | 0.0 | |
| 449480132 | 635 | PREDICTED: probable methyltransferase PM | 0.977 | 0.963 | 0.667 | 0.0 |
| >gi|359490397|ref|XP_002279420.2| PREDICTED: probable methyltransferase PMT15-like [Vitis vinifera] gi|297741098|emb|CBI31829.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 991 bits (2561), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/631 (75%), Positives = 522/631 (82%), Gaps = 20/631 (3%)
Query: 2 AGPKPSKPSIIRTNVYSLTLILFLCIFSYLFGLWQHGGPTPLLPATTSTTTVVDI----- 56
A P + +TN+YSL +I F C FSY G WQHG TTSTT +
Sbjct: 25 AKPSSTFSFCTKTNIYSLAVITFFCSFSYFLGSWQHGR------GTTSTTAEFSLRGRCN 78
Query: 57 ACSTATATAT-----APKTIDFTAHHVA----ATSSEAVMKTYPLCNISYSEYTPCQDGK 107
+T TA A +IDF+ HH A AT E +K+YP C + YSEYTPC+ K
Sbjct: 79 PSQNSTNTALNDPFLAQLSIDFSTHHAAEDGVATVPEEKVKSYPACGVEYSEYTPCEGTK 138
Query: 108 RSLKFSRRRLIYRERHCPAKSELLKCRVPAPYGYRNPFAWPTSRDLVWYANVPHKELTVE 167
R+LKF R RLIYRERHCP K +LLKCR+PAPYGYRNP AWP SRD+ WYANVPHKELTVE
Sbjct: 139 RALKFERERLIYRERHCPEKGDLLKCRIPAPYGYRNPPAWPASRDVAWYANVPHKELTVE 198
Query: 168 KAVQNWIRYEGDRFRFPGGGTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGA 227
KAVQNWI YEGDRFRFPGGGTMFPNGADAYIDDIGKLINL DGSIRTAIDTGCGVASWGA
Sbjct: 199 KAVQNWIIYEGDRFRFPGGGTMFPNGADAYIDDIGKLINLKDGSIRTAIDTGCGVASWGA 258
Query: 228 YLLSRNIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIP 287
YLLSRNIITMSFAPRDTHEAQVQFALERGVPALIGVLA+ RLPYPSRAFDMAHCSRCLIP
Sbjct: 259 YLLSRNIITMSFAPRDTHEAQVQFALERGVPALIGVLASIRLPYPSRAFDMAHCSRCLIP 318
Query: 288 WNQFGGIYLIEVDRVLRPGGYWILSGPPINWKKHARGWQRTKEDLNKEQTAIENVAKSLC 347
W Q+ G+YLIEVDRVLRPGGYW+LSGPPINWKKH RGW+RT++DL EQ IENVAKSLC
Sbjct: 319 WGQYDGVYLIEVDRVLRPGGYWVLSGPPINWKKHWRGWERTEKDLKAEQQTIENVAKSLC 378
Query: 348 WEKIKEKGDIAIWRKPINHLNCKTNQKLSQNPPFCPVQDPDKAWYTQMGTCLTRLPEVSS 407
W+K+ EK DIAIW+KPINHL CK N+K++QNPPFC QDPD+AWYT+M TCLT LPEVS
Sbjct: 379 WKKLVEKDDIAIWQKPINHLYCKVNRKITQNPPFCLPQDPDRAWYTKMETCLTPLPEVSY 438
Query: 408 DRETAGGELAKWPQRLNAVPPRISKGTVKGITPEIFQQNSELWKKRLSYYKTMNNQLGQS 467
+E AGGELAKWP+RLN +PPRIS G++ G+T EIFQ NSELWKKR+SYYK +NNQL Q
Sbjct: 439 SQELAGGELAKWPERLNVIPPRISSGSINGVTAEIFQLNSELWKKRMSYYKAVNNQLRQP 498
Query: 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMS 527
GRYRN+LDMNA+LGGFAAAL++ PVWVMNVVP +AKINTLGVIYERGL+GTY NWCEAMS
Sbjct: 499 GRYRNLLDMNAYLGGFAAALVEDPVWVMNVVPVDAKINTLGVIYERGLIGTYQNWCEAMS 558
Query: 528 TYPRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDAL 587
TYPRTYDLIHADSVFSLYKDRCE EDILLEMDRILRPEG VI RDDVD LVK+KRI D L
Sbjct: 559 TYPRTYDLIHADSVFSLYKDRCEMEDILLEMDRILRPEGSVILRDDVDVLVKIKRITDGL 618
Query: 588 KWQSQIVDHEDGPLEREKLLFAVKLYWTAPA 618
W S+IVDHEDGP +REKLLFAVK YWTAPA
Sbjct: 619 NWMSRIVDHEDGPHQREKLLFAVKSYWTAPA 649
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255539529|ref|XP_002510829.1| ATP binding protein, putative [Ricinus communis] gi|223549944|gb|EEF51431.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 974 bits (2519), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/639 (74%), Positives = 537/639 (84%), Gaps = 19/639 (2%)
Query: 5 KPSKP--------SIIRTNVYSLTLILFLCIFSYLFGLWQHGGPTPLLPATTSTTTVVDI 56
KPSKP S R N++SL LI FLCIF YLFGLWQ G +TT+T T+V I
Sbjct: 13 KPSKPFMAKMFPFSFKRKNLFSLLLISFLCIFCYLFGLWQRAGS--FTLSTTTTNTIVSI 70
Query: 57 AC---STATATATAPKTIDFTAHHVAATSSEAV---MKTYPLCNISYSEYTPCQDGKRSL 110
C +TAT + +DF HHVA V +K YP CN+++SEYTPC+D RSL
Sbjct: 71 PCKPTTTATNNKKQEEPLDFVPHHVAQDGGVTVAPEVKIYPPCNVNFSEYTPCEDDNRSL 130
Query: 111 KFSRRRLIYRERHCPAKSELLKCRVPAPYGYRNPFAWPTSRDLVWYANVPHKELTVEKAV 170
+F+RR+LIYRERHCP E +KCR+PAPYGY+NPF WP SR+ WYANVPHK LTVEKAV
Sbjct: 131 RFNRRQLIYRERHCPETYEKIKCRIPAPYGYKNPFTWPASRNFAWYANVPHKHLTVEKAV 190
Query: 171 QNWIRYEGDRFRFPGGGTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLL 230
QNWIRYEGDRFRFPGGGTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLL
Sbjct: 191 QNWIRYEGDRFRFPGGGTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLL 250
Query: 231 SRNIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQ 290
SRNI+TMSFAPRDTHEAQVQFALERGVPALIGVLA++RLPYPS AFDMAHCSRCLIPW
Sbjct: 251 SRNILTMSFAPRDTHEAQVQFALERGVPALIGVLASKRLPYPSTAFDMAHCSRCLIPWAD 310
Query: 291 FGGIYLIEVDRVLRPGGYWILSGPPINWKKHARGWQRTKEDLNKEQTAIENVAKSLCWEK 350
G++LIEVDRVLRPGGYWILSGPPI WKK+ +GW+RTKEDLN EQT IENVAKSLCW+K
Sbjct: 311 LEGLFLIEVDRVLRPGGYWILSGPPIRWKKYWKGWERTKEDLNAEQTKIENVAKSLCWKK 370
Query: 351 IKEKGDIAIWRKPINHLNCKTNQKLSQNPPFCPV-QDPDKAWYTQMGTCLTRLPEVSSDR 409
+ EK DIAIW+KP+NHLNCK N+ ++QNPPFCP QDPDKAWYT++ TCL+ LPEVS+++
Sbjct: 371 LVEKDDIAIWQKPLNHLNCKINRNITQNPPFCPRDQDPDKAWYTKLETCLSNLPEVSNNQ 430
Query: 410 ETAGGELAKWPQRLNAVPPRISKGTVKGITPEIFQQNSELWKKRLSYYKTMNNQLGQSGR 469
E AGG+L KWP+RLNAVPPRIS+G+VKG+T E FQ++ +LW KR+ YYKT+NNQLGQ+GR
Sbjct: 431 EIAGGKLKKWPERLNAVPPRISRGSVKGLTAENFQKDIKLWTKRVQYYKTVNNQLGQAGR 490
Query: 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTY 529
YRN+LDMNA LGGFAAALID PVW MNV+P +AK+NTLGVIYERGL+GTY +WCEAMSTY
Sbjct: 491 YRNLLDMNAQLGGFAAALIDLPVWAMNVIPVQAKVNTLGVIYERGLIGTYQDWCEAMSTY 550
Query: 530 PRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKW 589
PRTYDLIHAD VFSLY+ RCE EDILLEMDRILRPEG VIFRDDVD LVK+KRI D L W
Sbjct: 551 PRTYDLIHADLVFSLYQGRCEMEDILLEMDRILRPEGSVIFRDDVDMLVKIKRITDGLNW 610
Query: 590 QSQIVDHEDGPLEREKLLFAVKLYWTAP--AEETASESS 626
+SQIVDHEDGPLEREKLLFAVK YWTAP A++ S SS
Sbjct: 611 ESQIVDHEDGPLEREKLLFAVKSYWTAPAAADQNGSNSS 649
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224134709|ref|XP_002321888.1| predicted protein [Populus trichocarpa] gi|222868884|gb|EEF06015.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 967 bits (2499), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/624 (72%), Positives = 513/624 (82%), Gaps = 20/624 (3%)
Query: 9 PSIIRTNVYSLTLILFLCIFSYLFGLWQHGGPTPLLPATTSTTTVVDIACSTATATATAP 68
P + N+Y+ LILFLC FSYLFG W++ T+V I C + T T
Sbjct: 20 PFFKKINLYTFLLILFLCTFSYLFGSWRN--------------TIVSIPCDPSKPTTTVT 65
Query: 69 ---KTIDFTAHHVAA---TSSEAVMKTYPLCNISYSEYTPCQDGKRSLKFSRRRLIYRER 122
K++DF HH A + + ++TYP CN++ SEYTPC+D KRS KFSR +LIY ER
Sbjct: 66 EEGKSLDFATHHSAGDLDVTLTSEVRTYPSCNVNLSEYTPCEDPKRSFKFSRHQLIYEER 125
Query: 123 HCPAKSELLKCRVPAPYGYRNPFAWPTSRDLVWYANVPHKELTVEKAVQNWIRYEGDRFR 182
HCP K ELLKCR+PAPYGYRNPF WP SRD WY NVPHK LTVEKAVQNWIR+EGDRFR
Sbjct: 126 HCPEKGELLKCRIPAPYGYRNPFTWPASRDYAWYNNVPHKHLTVEKAVQNWIRFEGDRFR 185
Query: 183 FPGGGTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSRNIITMSFAPR 242
FPGGGTMFPNGADAYIDDIG+LI+LNDGSIRTAIDTGCGVASWGAYLLSRN++TMSFAPR
Sbjct: 186 FPGGGTMFPNGADAYIDDIGRLIDLNDGSIRTAIDTGCGVASWGAYLLSRNVLTMSFAPR 245
Query: 243 DTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRV 302
D HEAQVQFALERGVPALIG++A++RLPYPSRAFDMAHCSRCLIPW FGG YLIEVDRV
Sbjct: 246 DNHEAQVQFALERGVPALIGIMASKRLPYPSRAFDMAHCSRCLIPWADFGGQYLIEVDRV 305
Query: 303 LRPGGYWILSGPPINWKKHARGWQRTKEDLNKEQTAIENVAKSLCWEKIKEKGDIAIWRK 362
LRPGGYWILSGPPINWK H +GW RT++DLN EQ IE VA SLCW+K+ EK DIAIW+K
Sbjct: 306 LRPGGYWILSGPPINWKTHWKGWDRTEDDLNDEQNKIETVANSLCWKKLVEKDDIAIWQK 365
Query: 363 PINHLNCKTNQKLSQNPPFCPVQDPDKAWYTQMGTCLTRLPEVSSDRETAGGELAKWPQR 422
PINHLNCK N+K++QNPPFCP DPDKAWYT M TCLT LPE SS+++ AGGEL KWP+R
Sbjct: 366 PINHLNCKVNRKITQNPPFCPAHDPDKAWYTNMETCLTNLPEASSNQDVAGGELPKWPER 425
Query: 423 LNAVPPRISKGTVKGITPEIFQQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGG 482
LNAVPPRIS+GT++GIT E FQ+++ LW +R+SYYK +NNQL + GRYRNILDMNA+LGG
Sbjct: 426 LNAVPPRISRGTLEGITAETFQKDTALWNRRVSYYKAVNNQLEKPGRYRNILDMNAYLGG 485
Query: 483 FAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYPRTYDLIHADSVF 542
FAAALI+ P+WVMNVVP +A NTLGVIYERGL+GTY +WCEAMSTYPRTYD IHADSVF
Sbjct: 486 FAAALINDPLWVMNVVPVQASANTLGVIYERGLIGTYQDWCEAMSTYPRTYDFIHADSVF 545
Query: 543 SLYKDRCETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQIVDHEDGPLE 602
SLY RCE EDILLEMDRILRPEG VIFRDDVD LVK+K+I D L W S+IVDHEDGP +
Sbjct: 546 SLYDGRCEMEDILLEMDRILRPEGNVIFRDDVDVLVKIKKITDRLNWDSRIVDHEDGPHQ 605
Query: 603 REKLLFAVKLYWTAPAEETASESS 626
REKLLFAVK YWTAPA+ ++
Sbjct: 606 REKLLFAVKSYWTAPADHQKESTT 629
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449446185|ref|XP_004140852.1| PREDICTED: probable methyltransferase PMT15-like [Cucumis sativus] gi|449485630|ref|XP_004157229.1| PREDICTED: LOW QUALITY PROTEIN: probable methyltransferase PMT15-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 936 bits (2419), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/622 (71%), Positives = 505/622 (81%), Gaps = 32/622 (5%)
Query: 1 MAGPKPSK-PSI-IRTNVYSLTLILFLCIFSYLFGLWQHG-GPTPLLPATTSTTTVVDIA 57
MA + SK P+I +RT Y+++LILFLC+ SY GL Q +LP TT+ +
Sbjct: 1 MASKQSSKQPNISLRTKFYTISLILFLCVSSYFLGLRQRQPSSAAILPCTTTLQNI---- 56
Query: 58 CSTATATATAPKTIDFTAHHVAATSSEAVMKTYPLCNISYSEYTPCQDGKRSLKFSRRRL 117
T TA P +P C + YSEYTPC+D +RSLKFSR RL
Sbjct: 57 ----TITAAKP---------------------FPACGLVYSEYTPCEDTQRSLKFSRDRL 91
Query: 118 IYRERHCPAKSELLKCRVPAPYGYRNPFAWPTSRDLVWYANVPHKELTVEKAVQNWIRYE 177
IYRERHCP K E LKCR+PAP GYRNPFAWP SRDL WY NVPHK+LTVEKAVQNWIRYE
Sbjct: 92 IYRERHCPEKEEALKCRIPAPPGYRNPFAWPVSRDLAWYVNVPHKDLTVEKAVQNWIRYE 151
Query: 178 GDRFRFPGGGTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSRNIITM 237
G+ FRFPGGGTMFP+GADAYID+IGKLINL DGSIRTAIDTGCGV SWGAYLLSR IITM
Sbjct: 152 GETFRFPGGGTMFPDGADAYIDNIGKLINLKDGSIRTAIDTGCGVGSWGAYLLSRGIITM 211
Query: 238 SFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLI 297
SFAPRDTHEAQVQFALERGVPALIG+LA++RLPYPS AFDMAHCSRCLIPW+Q+ GI+LI
Sbjct: 212 SFAPRDTHEAQVQFALERGVPALIGILASKRLPYPSNAFDMAHCSRCLIPWSQYDGIFLI 271
Query: 298 EVDRVLRPGGYWILSGPPINWKKHARGWQRTKEDLNKEQTAIENVAKSLCWEKIKEKGDI 357
EVDRVLRPGGYWILSGPPINW KH +GW+RTKEDLN EQ AIE VAKSLCW K+ E GDI
Sbjct: 272 EVDRVLRPGGYWILSGPPINWNKHWKGWERTKEDLNSEQLAIEKVAKSLCWTKLVEDGDI 331
Query: 358 AIWRKPINHLNCKTNQKLSQNPPFCPVQDPDKAWYTQMGTCLTRLPEVSSDRETAGGELA 417
AIW+KPINHLNCK N+K+++NPPFC QDPD+AWYT M CLT LPEVS+ +E AGG+LA
Sbjct: 332 AIWQKPINHLNCKVNRKITKNPPFCNAQDPDRAWYTDMQACLTHLPEVSNSKEIAGGKLA 391
Query: 418 KWPQRLNAVPPRISKGTVKGITPEIFQQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMN 477
+WP+RLNA+P RIS+GTV+G+T E F +SELWKKRL+YY+T+NNQL + GRYRN LDMN
Sbjct: 392 RWPERLNAIPQRISRGTVEGVTEETFIHDSELWKKRLTYYRTINNQLNKPGRYRNFLDMN 451
Query: 478 AHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYPRTYDLIH 537
A LGGFAAAL+D PVWVMNVVP +AK+NTLGVIY+RGL+GTY +WCEAMSTYPRTYD IH
Sbjct: 452 AFLGGFAAALVDDPVWVMNVVPVDAKVNTLGVIYDRGLIGTYQDWCEAMSTYPRTYDFIH 511
Query: 538 ADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQIVDHE 597
ADSVFSLY++RCE EDILLEMDRILRPEG VIFR+++D L K+K I D L W SQIV HE
Sbjct: 512 ADSVFSLYENRCEMEDILLEMDRILRPEGSVIFRENIDTLAKIKMITDNLNWSSQIVHHE 571
Query: 598 DGPLEREKLLFAVKLYWTAPAE 619
DGP EKLLFAVK YWTAP E
Sbjct: 572 DGPYHMEKLLFAVKNYWTAPPE 593
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224122430|ref|XP_002318832.1| predicted protein [Populus trichocarpa] gi|222859505|gb|EEE97052.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 935 bits (2416), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/561 (77%), Positives = 488/561 (86%), Gaps = 4/561 (0%)
Query: 59 STATATAT-APKTIDFTAHHVAAT---SSEAVMKTYPLCNISYSEYTPCQDGKRSLKFSR 114
S AT AT K +DF++HH A + + +K+YP CN+++SEYTPC+D KRSL+F R
Sbjct: 3 SKATTAATRGGKPLDFSSHHKADDLDFTLTSEVKSYPSCNVNFSEYTPCEDAKRSLRFKR 62
Query: 115 RRLIYRERHCPAKSELLKCRVPAPYGYRNPFAWPTSRDLVWYANVPHKELTVEKAVQNWI 174
+LIYRERHCP K E+LKCR+PAP+GY+NPF WP SRD WY NVPHK LTVEKA QNWI
Sbjct: 63 HQLIYRERHCPEKHEILKCRIPAPHGYKNPFKWPASRDFAWYNNVPHKHLTVEKAGQNWI 122
Query: 175 RYEGDRFRFPGGGTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSRNI 234
R+ GDRFRFPGGGTMFPNGADAYIDDIG+LINL DGSIRTAIDTGCGVASWGAYLLSRNI
Sbjct: 123 RFAGDRFRFPGGGTMFPNGADAYIDDIGRLINLKDGSIRTAIDTGCGVASWGAYLLSRNI 182
Query: 235 ITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGI 294
+TMSFAPRDTHEAQVQFALERGVPALIG+LA++RLPYPSRAFDMAHCSRCLIPW + GG
Sbjct: 183 LTMSFAPRDTHEAQVQFALERGVPALIGILASKRLPYPSRAFDMAHCSRCLIPWAESGGQ 242
Query: 295 YLIEVDRVLRPGGYWILSGPPINWKKHARGWQRTKEDLNKEQTAIENVAKSLCWEKIKEK 354
YLIEVDRVLRPGGYW+LSGPPINWKKH +GW+RTK+DLN E IE VAKSLCW K EK
Sbjct: 243 YLIEVDRVLRPGGYWVLSGPPINWKKHWKGWERTKDDLNDEHMKIEAVAKSLCWRKFVEK 302
Query: 355 GDIAIWRKPINHLNCKTNQKLSQNPPFCPVQDPDKAWYTQMGTCLTRLPEVSSDRETAGG 414
GDIAIW+KPINHLNCK N+K++QNPPFCP QDP+KAWYT M TCLT LPEVS+ + AGG
Sbjct: 303 GDIAIWKKPINHLNCKVNRKITQNPPFCPAQDPEKAWYTNMETCLTHLPEVSNKEDVAGG 362
Query: 415 ELAKWPQRLNAVPPRISKGTVKGITPEIFQQNSELWKKRLSYYKTMNNQLGQSGRYRNIL 474
EL KWP+RLNAVPPRIS+GT+KGIT E FQ+++ LW +R+SYYK +NNQL Q+GRYRNIL
Sbjct: 363 ELPKWPERLNAVPPRISRGTLKGITAETFQKDTALWNRRVSYYKAVNNQLEQAGRYRNIL 422
Query: 475 DMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYPRTYD 534
DMNA+LGGFAAAL + P+WVMNVVP +AK+NTLGVIYERGL+GTY +WCEAMSTYPRTYD
Sbjct: 423 DMNAYLGGFAAALTEDPLWVMNVVPIQAKVNTLGVIYERGLIGTYQDWCEAMSTYPRTYD 482
Query: 535 LIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQIV 594
LIHADSVFSLY RCE EDILLEMDRILRPEG VIFRDDVD LVK+K+I D L W SQIV
Sbjct: 483 LIHADSVFSLYDGRCEMEDILLEMDRILRPEGSVIFRDDVDVLVKIKKISDGLNWDSQIV 542
Query: 595 DHEDGPLEREKLLFAVKLYWT 615
DHEDGP +REKLLFA+K YWT
Sbjct: 543 DHEDGPHQREKLLFAIKTYWT 563
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356559857|ref|XP_003548213.1| PREDICTED: probable methyltransferase PMT16-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 929 bits (2401), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/620 (70%), Positives = 512/620 (82%), Gaps = 14/620 (2%)
Query: 5 KPSKPSII---RTNVYSLTLILFLCIFSYLFGLWQHGGPTPLLPATTSTTTVVDIACSTA 61
KPSKP+ +TN+Y TL+ FLCI SYL G +Q T+ TT C
Sbjct: 15 KPSKPTTTFFKKTNLY--TLLAFLCIVSYLLGAYQGTT------TKTTITTTTTTPCPQN 66
Query: 62 TATATAPKTIDFTAHHVAATSSEAVMKT--YPLCNISYSEYTPCQDGKRSLKFSRRRLIY 119
T +DF++HH + + + T +P C++S SEYTPC+D RSL++SRRR++Y
Sbjct: 67 PTLTTTTHLLDFSSHHNSTNLNPSTSTTLHFPPCHVSLSEYTPCEDHARSLQYSRRRMVY 126
Query: 120 RERHCPAKSELLKCRVPAPYGYRNPFAWPTSRDLVWYANVPHKELTVEKAVQNWIRYEGD 179
RERHCP +E+LKCRVPAP+GYRNPF WP SRD+ WYANVPH+ELTVEKAVQNWIRY+GD
Sbjct: 127 RERHCPRNNEVLKCRVPAPHGYRNPFPWPASRDVAWYANVPHRELTVEKAVQNWIRYDGD 186
Query: 180 RFRFPGGGTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSRNIITMSF 239
RF FPGGGTMFP+GAD YIDDI L+NL DG++RTA+DTGCGVASWGAYLLSR+IIT+S
Sbjct: 187 RFHFPGGGTMFPDGADKYIDDIADLVNLRDGTVRTAVDTGCGVASWGAYLLSRDIITVSI 246
Query: 240 APRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEV 299
APRDTHEAQVQFALERGVPALIGVLA++RLP+PSRAFDMAHCSRCLIPW ++ G+YL E+
Sbjct: 247 APRDTHEAQVQFALERGVPALIGVLASKRLPFPSRAFDMAHCSRCLIPWAEYDGLYLNEI 306
Query: 300 DRVLRPGGYWILSGPPINWKKHARGWQRTKEDLNKEQTAIENVAKSLCWEKIKEKGDIAI 359
DR+LRPGGYWILSGPPI WKKH +GW+RTKEDLNKEQT IEN AKSLCW K+ EK DIAI
Sbjct: 307 DRILRPGGYWILSGPPIRWKKHWKGWERTKEDLNKEQTKIENAAKSLCWNKLVEKDDIAI 366
Query: 360 WRKPINHLNCKTNQKLSQNPPFCPVQ-DPDKAWYTQMGTCLTRLPEVSSDRETAGGELAK 418
W+K NHL+CK+N+KL+QN PFC Q +PDKAWYT M TCL+ +PEVSS ETAGG L K
Sbjct: 367 WQKAKNHLDCKSNRKLTQNRPFCKAQNNPDKAWYTDMQTCLSPMPEVSSKEETAGGALKK 426
Query: 419 WPQRLNAVPPRISKGTVKGITPEIFQQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNA 478
WP+RL A PPRIS+GT+KG+ PE F +++ELWKKR++YYK NNQLG++GRYRN+LDMNA
Sbjct: 427 WPERLKATPPRISRGTIKGVNPETFSKDNELWKKRVAYYKKANNQLGKAGRYRNLLDMNA 486
Query: 479 HLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYPRTYDLIHA 538
+LGGFAAAL+D PVWVMNVVP +AK++TLG IYERGL+GTY NWCEAMSTYPRTYDLIHA
Sbjct: 487 YLGGFAAALVDLPVWVMNVVPVQAKVDTLGAIYERGLIGTYHNWCEAMSTYPRTYDLIHA 546
Query: 539 DSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQIVDHED 598
DS+FSLY DRCE EDILLEMDRILRPEG VI RDDVD LVKVK I++ + W SQIVDHED
Sbjct: 547 DSLFSLYNDRCELEDILLEMDRILRPEGSVIIRDDVDILVKVKSIVNGMDWDSQIVDHED 606
Query: 599 GPLEREKLLFAVKLYWTAPA 618
GPLEREKLLFAVK YWTAPA
Sbjct: 607 GPLEREKLLFAVKNYWTAPA 626
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356529267|ref|XP_003533217.1| PREDICTED: probable methyltransferase PMT16-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 925 bits (2391), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/621 (70%), Positives = 509/621 (81%), Gaps = 15/621 (2%)
Query: 5 KPSKPS----IIRTNVYSLTLILFLCIFSYLFGLWQHGGPTPLLPATTSTTTVVDIACST 60
KPSKP+ +TN+Y TL+ FLCI SYL G +Q T T+T +
Sbjct: 15 KPSKPTGTTLCKKTNLY--TLLAFLCIISYLLGAYQGTTTTTTTTTYTTTPPCLQ----- 67
Query: 61 ATATATAPKTIDFTAHHVAATSSEAVMKT--YPLCNISYSEYTPCQDGKRSLKFSRRRLI 118
T + +DF++HH + T YP C++S SEYTPC+D RSL++SRRR++
Sbjct: 68 -NPTLSTTHHLDFSSHHNSTNLPPLTSTTLHYPPCHVSLSEYTPCEDHARSLQYSRRRMV 126
Query: 119 YRERHCPAKSELLKCRVPAPYGYRNPFAWPTSRDLVWYANVPHKELTVEKAVQNWIRYEG 178
YRERHCP S+LLKCRVPAP+GYRNPF WP SRD+ WYANVPH+ELTVEKAVQNWIRY+G
Sbjct: 127 YRERHCPTNSDLLKCRVPAPHGYRNPFPWPASRDVAWYANVPHRELTVEKAVQNWIRYDG 186
Query: 179 DRFRFPGGGTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSRNIITMS 238
DRFRFPGGGTMFPNGAD YIDDI L+NL DG++RTA+DTGCGVASWGAYLLSR+IIT+S
Sbjct: 187 DRFRFPGGGTMFPNGADKYIDDIADLVNLRDGTVRTAVDTGCGVASWGAYLLSRDIITVS 246
Query: 239 FAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIE 298
APRDTHEAQVQFALERGVPALIGVLA++RLP+PSRAFDMAHCSRCLIPW ++ G+YL E
Sbjct: 247 IAPRDTHEAQVQFALERGVPALIGVLASKRLPFPSRAFDMAHCSRCLIPWAEYDGLYLNE 306
Query: 299 VDRVLRPGGYWILSGPPINWKKHARGWQRTKEDLNKEQTAIENVAKSLCWEKIKEKGDIA 358
+DR+LRPGGYWILSGPPI WKKH +GW+RTKEDLN+EQT IENVAKSLCW K+ EK DIA
Sbjct: 307 IDRILRPGGYWILSGPPIRWKKHWKGWERTKEDLNEEQTKIENVAKSLCWNKLVEKDDIA 366
Query: 359 IWRKPINHLNCKTNQKLSQNPPFCPVQ-DPDKAWYTQMGTCLTRLPEVSSDRETAGGELA 417
IW+K NHL+CK N+KLS N P C Q +PDKAWYT+M TCL+ LPEVSS ETAGG L
Sbjct: 367 IWQKAKNHLDCKANRKLSHNRPLCKAQSNPDKAWYTEMQTCLSPLPEVSSKDETAGGALK 426
Query: 418 KWPQRLNAVPPRISKGTVKGITPEIFQQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMN 477
WP+RL A PPRISKGT+KG+T E F +++ELWKKR++YYK +NNQLG++GRYRN+L+MN
Sbjct: 427 NWPERLKATPPRISKGTIKGVTSETFSKDNELWKKRIAYYKKVNNQLGKAGRYRNLLEMN 486
Query: 478 AHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYPRTYDLIH 537
A+LGGFAA L+D PVWVMNVVP +AK++TLG IYERGL+GTY NWCEAMSTYPRTYDLIH
Sbjct: 487 AYLGGFAAVLVDLPVWVMNVVPVQAKVDTLGAIYERGLIGTYHNWCEAMSTYPRTYDLIH 546
Query: 538 ADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQIVDHE 597
ADSVFSLY DRCE EDILLEMDRILRPEG VI RDDVD LVKVK I++ + W QIVDHE
Sbjct: 547 ADSVFSLYSDRCELEDILLEMDRILRPEGSVIIRDDVDILVKVKSIVNGMDWDCQIVDHE 606
Query: 598 DGPLEREKLLFAVKLYWTAPA 618
DGPLEREKLLFAVK YWTAPA
Sbjct: 607 DGPLEREKLLFAVKNYWTAPA 627
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357507093|ref|XP_003623835.1| hypothetical protein MTR_7g076170 [Medicago truncatula] gi|124360854|gb|ABN08826.1| Generic methyltransferase [Medicago truncatula] gi|355498850|gb|AES80053.1| hypothetical protein MTR_7g076170 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 889 bits (2298), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/635 (66%), Positives = 505/635 (79%), Gaps = 22/635 (3%)
Query: 5 KPSKPSIIRTNVYSLTLILFLCIFSYLFGLWQHGGPTPLLPATTS---------TTTVVD 55
KP+KP + +Y LT +FLC F Y GLWQ+ P TTS +TT++
Sbjct: 12 KPNKPF---SRIYFLTFTIFLCTFFYFLGLWQNS------PTTTSAAISGNNHHSTTIIR 62
Query: 56 IACSTAT--ATATAPKTIDFTAHHVAATSSEAVMKTY--PLCNISYSEYTPCQDGKRSLK 111
C A +T T+ T+DF+AHH E + P+C+++ SEYTPC+D +RSLK
Sbjct: 63 PDCPPANFTSTTTSSTTLDFSAHHNVPDPPETSERVTHAPVCDVALSEYTPCEDTQRSLK 122
Query: 112 FSRRRLIYRERHCPAKSELLKCRVPAPYGYRNPFAWPTSRDLVWYANVPHKELTVEKAVQ 171
F R LIYRERHCP K E+L+CR+PAPYGYR P WP SRD WYANVPHKELT+EK Q
Sbjct: 123 FPRENLIYRERHCPEKEEVLRCRIPAPYGYRVPPRWPESRDWAWYANVPHKELTIEKKNQ 182
Query: 172 NWIRYEGDRFRFPGGGTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLS 231
NW+ +EGDRFRFPGGGTMFP GA AYIDDIGKLINL DGS+RTA+DTGCGVASWGAYLL
Sbjct: 183 NWVHFEGDRFRFPGGGTMFPRGAGAYIDDIGKLINLKDGSVRTALDTGCGVASWGAYLLP 242
Query: 232 RNIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQF 291
R+I+ +SFAPRDTHEAQVQFALERGVPALIGV+A+ RLPYPSRAFDMAHCSRCLIPW Q
Sbjct: 243 RDILAVSFAPRDTHEAQVQFALERGVPALIGVIASIRLPYPSRAFDMAHCSRCLIPWGQN 302
Query: 292 GGIYLIEVDRVLRPGGYWILSGPPINWKKHARGWQRTKEDLNKEQTAIENVAKSLCWEKI 351
GIYL EVDRVLRPGGYWILSGPPINW+ H +GW+RT+EDLN EQT+IE VAKSLCW+K+
Sbjct: 303 DGIYLTEVDRVLRPGGYWILSGPPINWESHWKGWERTREDLNAEQTSIERVAKSLCWKKL 362
Query: 352 KEKGDIAIWRKPINHLNCKTNQKLSQNPPFCPVQDPDKAWYTQMGTCLTRLPEVSSDRET 411
+KGDIAIW+KP NH++CK +K+ +N PFC +DPD AWYT+M TCLT LPEV+ +E
Sbjct: 363 VQKGDIAIWQKPTNHIHCKITRKVFKNRPFCDAKDPDSAWYTKMDTCLTPLPEVTDIKEV 422
Query: 412 AGGELAKWPQRLNAVPPRISKGTVKGITPEIFQQNSELWKKRLSYYKTMNNQLGQSGRYR 471
+G L+ WP+RL +VPPRIS G++ GIT E+F++N+ELWKKR++YYKT++ QL + GRYR
Sbjct: 423 SGRGLSNWPERLTSVPPRISSGSLDGITAEMFKENTELWKKRVAYYKTLDYQLAEPGRYR 482
Query: 472 NILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYPR 531
N+LDMNA+LGGFAAA+ID PVWVMNVVP EA+INTLGV+YERGL+GTY NWCEAMSTYPR
Sbjct: 483 NLLDMNAYLGGFAAAMIDDPVWVMNVVPVEAEINTLGVVYERGLIGTYQNWCEAMSTYPR 542
Query: 532 TYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQS 591
TYD IHADS+F+LY+DRC EDIL+EMDRILRP+G VI RDDVD L+KVKR DA++W +
Sbjct: 543 TYDFIHADSLFTLYEDRCNIEDILVEMDRILRPQGSVILRDDVDVLLKVKRFADAMQWDA 602
Query: 592 QIVDHEDGPLEREKLLFAVKLYWTAPAEETASESS 626
+I DHE GP +REK+L AVK YWTAP E + +
Sbjct: 603 RIADHEKGPHQREKILVAVKQYWTAPQPEQNQQRN 637
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255541466|ref|XP_002511797.1| ATP binding protein, putative [Ricinus communis] gi|223548977|gb|EEF50466.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 889 bits (2297), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/609 (68%), Positives = 489/609 (80%), Gaps = 12/609 (1%)
Query: 13 RTNVYSLTLILFLCIFSYLFGLWQHG-GPTPLLPATTSTTTVVDIACSTATATATAPKTI 71
+ N+Y +T+ LC Y G +Q+ G PL +TS +++ D A T +
Sbjct: 14 KANLYKITVTTILCTVFYFIGFYQNSRGRVPL---STSRSSIFDCAPQVLNTT------L 64
Query: 72 DFTAHHVAATS--SEAVMKTYPLCNISYSEYTPCQDGKRSLKFSRRRLIYRERHCPAKSE 129
DF HH A + P C+ SEYTPC+D +RSL+F R RL+YRERHCP K E
Sbjct: 65 DFDPHHQLPDPPLKAARVLHLPPCDPELSEYTPCEDRQRSLQFDRDRLVYRERHCPEKKE 124
Query: 130 LLKCRVPAPYGYRNPFAWPTSRDLVWYANVPHKELTVEKAVQNWIRYEGDRFRFPGGGTM 189
LLKCRVPAP+GYR PF WP SR+ W+ANVPHKELTVEK QNW+R+EGDRFRFPGGGTM
Sbjct: 125 LLKCRVPAPFGYRVPFRWPVSREYGWFANVPHKELTVEKKNQNWVRFEGDRFRFPGGGTM 184
Query: 190 FPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSRNIITMSFAPRDTHEAQV 249
FP GADAYIDDIGKLINL DGSIRTAIDTGCGVAS+GAYLLSRNI+TMSFAPRDTHEAQV
Sbjct: 185 FPRGADAYIDDIGKLINLKDGSIRTAIDTGCGVASFGAYLLSRNILTMSFAPRDTHEAQV 244
Query: 250 QFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYW 309
QFALERGVPALIGV A+ R PYPSRAFDMAHCSRCLIPW + G YLIEVDR+LRPGGYW
Sbjct: 245 QFALERGVPALIGVFASMRQPYPSRAFDMAHCSRCLIPWATYDGQYLIEVDRMLRPGGYW 304
Query: 310 ILSGPPINWKKHARGWQRTKEDLNKEQTAIENVAKSLCWEKIKEKGDIAIWRKPINHLNC 369
+LSGPPINW+ H +GW RT EDLN+EQT+IE VAKSLCW+K+ +K D+AIW+KP NH++C
Sbjct: 305 VLSGPPINWENHWKGWSRTPEDLNEEQTSIETVAKSLCWKKLVQKDDLAIWQKPTNHIHC 364
Query: 370 KTNQKLSQNPPFCPVQDPDKAWYTQMGTCLTRLPEVSSDRETAGGELAKWPQRLNAVPPR 429
K N+K+ + P FC QDPD+AWYT++ TCLT LPEVS+ R+ AGG+LA WP+RL A+PPR
Sbjct: 365 KANRKVFKQPLFCESQDPDRAWYTKLETCLTPLPEVSNIRDIAGGQLANWPERLTAIPPR 424
Query: 430 ISKGTVKGITPEIFQQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALID 489
IS G++ GIT E F +N+ELWKKR+ +YK +++QL + GRYRNILDMNA+LGGFAAAL+D
Sbjct: 425 ISSGSLNGITAETFTENTELWKKRVDHYKAVDHQLAEQGRYRNILDMNAYLGGFAAALVD 484
Query: 490 FPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYPRTYDLIHADSVFSLYKDRC 549
P WVMNVVP E INTLGVIYERGL+GTY NWCEAMSTYPRTYDLIHADSVFSLYKDRC
Sbjct: 485 DPAWVMNVVPVETDINTLGVIYERGLIGTYQNWCEAMSTYPRTYDLIHADSVFSLYKDRC 544
Query: 550 ETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQIVDHEDGPLEREKLLFA 609
+ ED+LLEMDRILRPEG VI RDDVD L+KVK I+D ++W ++I DHE P EREK+LFA
Sbjct: 545 DMEDLLLEMDRILRPEGSVIIRDDVDVLLKVKSIVDVMQWDARIADHERSPHEREKILFA 604
Query: 610 VKLYWTAPA 618
VK YWTAPA
Sbjct: 605 VKQYWTAPA 613
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449480132|ref|XP_004155808.1| PREDICTED: probable methyltransferase PMT15-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 889 bits (2296), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/616 (66%), Positives = 487/616 (79%), Gaps = 4/616 (0%)
Query: 13 RTNVYSLTLILFLCIFSYLFGLWQHG-GPTPLLPATTSTTTVVDIACSTATATATAPKTI 71
R N+Y++TL+ LC YL G+WQ G + + T +A + +TAT +
Sbjct: 12 RLNLYTITLVAILCAVFYLVGVWQQSIGKSLIFAGGNYACTASTVAATIENSTATTVIDL 71
Query: 72 DFTAHHVAA---TSSEAVMKTYPLCNISYSEYTPCQDGKRSLKFSRRRLIYRERHCPAKS 128
DF AHH AA +A +P C+ EYTPC+D +RSLKF R RLIYRERHCP
Sbjct: 72 DFAAHHTAADLPVVQKARRPNFPPCDSKLYEYTPCEDRERSLKFDRDRLIYRERHCPEAG 131
Query: 129 ELLKCRVPAPYGYRNPFAWPTSRDLVWYANVPHKELTVEKAVQNWIRYEGDRFRFPGGGT 188
E+LKCRVPAP GY+ PF WP SRD W++NVPHKELTVEK QNW+R+E DRFRFPGGGT
Sbjct: 132 EILKCRVPAPAGYKVPFRWPESRDFAWFSNVPHKELTVEKKNQNWVRFENDRFRFPGGGT 191
Query: 189 MFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSRNIITMSFAPRDTHEAQ 248
MFP GADAYIDDIGKLINL DGSIRTA+DTGCGVASWGAYLLSRNI+TMSFAPRDTHEAQ
Sbjct: 192 MFPRGADAYIDDIGKLINLADGSIRTAVDTGCGVASWGAYLLSRNIVTMSFAPRDTHEAQ 251
Query: 249 VQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGY 308
VQFALERGVPALIGVLA+ RLPYPSRAFDMAHCSRCLIPW Q G+YLIEVDR+LRPGGY
Sbjct: 252 VQFALERGVPALIGVLASIRLPYPSRAFDMAHCSRCLIPWAQSDGMYLIEVDRILRPGGY 311
Query: 309 WILSGPPINWKKHARGWQRTKEDLNKEQTAIENVAKSLCWEKIKEKGDIAIWRKPINHLN 368
W+LSGPPINW+ H +GW RT DL EQ+ IE VAKSLCW+K+K+K DIAIW+KP NH++
Sbjct: 312 WVLSGPPINWENHWKGWNRTTGDLQAEQSKIEAVAKSLCWKKLKQKDDIAIWQKPTNHIH 371
Query: 369 CKTNQKLSQNPPFCPVQDPDKAWYTQMGTCLTRLPEVSSDRETAGGELAKWPQRLNAVPP 428
CK N+K+ + P FC QDPD AWYT+M CLT LPEVS +ETAGG+L WP+RL +VPP
Sbjct: 372 CKKNRKVFKFPNFCQEQDPDIAWYTKMEPCLTPLPEVSDVKETAGGQLLNWPERLTSVPP 431
Query: 429 RISKGTVKGITPEIFQQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALI 488
RIS G++K ITP+ F +N+ELW+KR+++YK ++ QL + GRYRN+LDMN+ LGGFAAA++
Sbjct: 432 RISSGSLKQITPQNFTENTELWRKRVAHYKALDGQLAEPGRYRNLLDMNSFLGGFAAAIV 491
Query: 489 DFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYPRTYDLIHADSVFSLYKDR 548
D P+WVMN+VP EA NTLGVIYERGL+GTY NWCEAMSTYPRTYD IH DSVFS+YK R
Sbjct: 492 DDPLWVMNIVPVEADFNTLGVIYERGLIGTYQNWCEAMSTYPRTYDFIHGDSVFSMYKGR 551
Query: 549 CETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQIVDHEDGPLEREKLLF 608
CE EDILLEMDRILRP+G VI RDDVD LV+VK I +A++W+ +I DHE GP +REK+L
Sbjct: 552 CEMEDILLEMDRILRPQGSVILRDDVDVLVEVKSIAEAMQWECRIADHEKGPHQREKILV 611
Query: 609 AVKLYWTAPAEETASE 624
A K YWTA A E ++
Sbjct: 612 ATKQYWTASATEEENQ 627
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 626 | ||||||
| TAIR|locus:2117728 | 633 | AT4G00750 [Arabidopsis thalian | 0.971 | 0.960 | 0.644 | 1.7e-231 | |
| TAIR|locus:2050679 | 631 | AT2G45750 [Arabidopsis thalian | 0.971 | 0.963 | 0.649 | 5.3e-230 | |
| TAIR|locus:2196651 | 639 | AT1G33170 [Arabidopsis thalian | 0.878 | 0.860 | 0.614 | 4.3e-204 | |
| TAIR|locus:2127711 | 633 | AT4G10440 [Arabidopsis thalian | 0.968 | 0.957 | 0.577 | 7.9e-204 | |
| TAIR|locus:2202805 | 616 | AT1G26850 [Arabidopsis thalian | 0.974 | 0.990 | 0.563 | 1.3e-194 | |
| TAIR|locus:2141035 | 621 | AT4G18030 [Arabidopsis thalian | 0.974 | 0.982 | 0.550 | 6.2e-188 | |
| TAIR|locus:2041031 | 611 | AT2G43200 [Arabidopsis thalian | 0.833 | 0.854 | 0.526 | 1.4e-156 | |
| TAIR|locus:2034522 | 603 | AT1G31850 [Arabidopsis thalian | 0.840 | 0.872 | 0.468 | 2.6e-141 | |
| TAIR|locus:2134756 | 600 | ERD3 "early-responsive to dehy | 0.822 | 0.858 | 0.470 | 1.7e-137 | |
| TAIR|locus:2117733 | 600 | QUA3 "QUASIMODO 3" [Arabidopsi | 0.829 | 0.865 | 0.447 | 8.7e-127 |
| TAIR|locus:2117728 AT4G00750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2233 (791.1 bits), Expect = 1.7e-231, P = 1.7e-231
Identities = 398/618 (64%), Positives = 488/618 (78%)
Query: 13 RTNVYSLTLILFLCIFSYLFGLWQHGGXXXXXXXXXXXXXVVDIACSXXXXXXXXPKTID 72
+TN+Y + LI LC+ Y G+WQH G + + C+ P ++
Sbjct: 19 QTNLYRVILIAILCVTFYFVGVWQHSGRGISRSSISNHE-LTSVPCTFPHQTT--P-ILN 74
Query: 73 FTAHHVAA----TSSEAVMKTYPLCNISYSEYTPCQDGKRSLKFSRRRLIYRERHCPAKS 128
F + H A T ++A + P C + +SEYTPC+ RSL F R RLIYRERHCP K
Sbjct: 75 FASRHTAPDLPPTITDARVVQIPSCGVEFSEYTPCEFVNRSLNFPRERLIYRERHCPEKH 134
Query: 129 ELLKCRVPAPYGYRNPFAWPTSRDLVWYANVPHKELTVEKAVQNWIRYEGDRFRFPGGGT 188
E+++CR+PAPYGY PF WP SRD+ W+ANVPH ELTVEK QNW+RYE DRF FPGGGT
Sbjct: 135 EIVRCRIPAPYGYSLPFRWPESRDVAWFANVPHTELTVEKKNQNWVRYEKDRFLFPGGGT 194
Query: 189 MFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSRNIITMSFAPRDTHEAQ 248
MFP GADAYID+IG+LINL DGSIRTAIDTGCGVAS+GAYL+SRNI+TMSFAPRDTHEAQ
Sbjct: 195 MFPRGADAYIDEIGRLINLKDGSIRTAIDTGCGVASFGAYLMSRNIVTMSFAPRDTHEAQ 254
Query: 249 VQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGY 308
VQFALERGVPA+IGVLA+ RLP+P+RAFD+AHCSRCLIPW Q+ G YLIEVDRVLRPGGY
Sbjct: 255 VQFALERGVPAIIGVLASIRLPFPARAFDIAHCSRCLIPWGQYNGTYLIEVDRVLRPGGY 314
Query: 309 WILSGPPINWKKHARGWQRTKEDLNKEQTAIENVAKSLCWEKIKEKGDIAIWRKPINHLN 368
WILSGPPINW++H +GW+RT++DLN EQ+ IE VA+SLCW K+ ++ D+A+W+KP NH++
Sbjct: 315 WILSGPPINWQRHWKGWERTRDDLNSEQSQIERVARSLCWRKLVQREDLAVWQKPTNHVH 374
Query: 369 CKTNQKLSQNPPFCPVQDPDKAWYTQMGTCLTRLPEVSSD--RETAGGELAKWPQRLNAV 426
CK N+ PPFC P++ WYT++ TCLT LPEV+ +E AGG+LA+WP+RLNA+
Sbjct: 375 CKRNRIALGRPPFCHRTLPNQGWYTKLETCLTPLPEVTGSEIKEVAGGQLARWPERLNAL 434
Query: 427 PPRISKGTVKGITPEIFQQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAA 486
PPRI G+++GIT + F N+E W++R+SYYK + QL ++GRYRN LDMNAHLGGFA+A
Sbjct: 435 PPRIKSGSLEGITEDEFVSNTEKWQRRVSYYKKYDQQLAETGRYRNFLDMNAHLGGFASA 494
Query: 487 LIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYPRTYDLIHADSVFSLYK 546
L+D PVWVMNVVP EA +NTLGVIYERGL+GTY NWCEAMSTYPRTYD IHADSVFSLYK
Sbjct: 495 LVDDPVWVMNVVPVEASVNTLGVIYERGLIGTYQNWCEAMSTYPRTYDFIHADSVFSLYK 554
Query: 547 DRCETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQIVDHEDGPLEREKL 606
DRC+ EDILLEMDRILRP+G VI RDD+D L KVK+I DA++W+ +I DHE+GPLEREK+
Sbjct: 555 DRCDMEDILLEMDRILRPKGSVIIRDDIDVLTKVKKITDAMQWEGRIGDHENGPLEREKI 614
Query: 607 LFAVKLYWTAPAEETASE 624
LF VK YWTAPA + +S+
Sbjct: 615 LFLVKEYWTAPAPDQSSD 632
|
|
| TAIR|locus:2050679 AT2G45750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2219 (786.2 bits), Expect = 5.3e-230, P = 5.3e-230
Identities = 404/622 (64%), Positives = 489/622 (78%)
Query: 13 RTNVYSLTLILFLCIFSYLFGLWQHGGXXXXXXXXXXXXXVVDIACSXXXXXXXXPKTID 72
+ N+Y +TL+ LCI SYL G+WQ+ C K +D
Sbjct: 13 KANLYYVTLVALLCIASYLLGIWQNTAVNPRAAFDDSDGT----PCEGFTRPNST-KDLD 67
Query: 73 FTAHHVAATSSEAVMKT---YPLCNISYSEYTPCQDGKRSLKFSRRRLIYRERHCPAKSE 129
F AHH V +T +P C + SE+TPC+D KRSLKFSR RL YR+RHCP + E
Sbjct: 68 FDAHH-NIQDPPPVTETAVSFPSCAAALSEHTPCEDAKRSLKFSRERLEYRQRHCPEREE 126
Query: 130 LLKCRVPAPYGYRNPFAWPTSRDLVWYANVPHKELTVEKAVQNWIRYEGDRFRFPGGGTM 189
+LKCR+PAPYGY+ PF WP SRD+ W+ANVPH ELTVEK QNW+RYE DRF FPGGGTM
Sbjct: 127 ILKCRIPAPYGYKTPFRWPASRDVAWFANVPHTELTVEKKNQNWVRYENDRFWFPGGGTM 186
Query: 190 FPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSRNIITMSFAPRDTHEAQV 249
FP GADAYIDDIG+LI+L+DGSIRTAIDTGCGVAS+GAYLLSRNI TMSFAPRDTHEAQV
Sbjct: 187 FPRGADAYIDDIGRLIDLSDGSIRTAIDTGCGVASFGAYLLSRNITTMSFAPRDTHEAQV 246
Query: 250 QFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYW 309
QFALERGVPA+IG++A RLPYPSRAFD+AHCSRCLIPW Q G YL+EVDRVLRPGGYW
Sbjct: 247 QFALERGVPAMIGIMATIRLPYPSRAFDLAHCSRCLIPWGQNDGAYLMEVDRVLRPGGYW 306
Query: 310 ILSGPPINWKKHARGWQRTKEDLNKEQTAIENVAKSLCWEKIKEKGDIAIWRKPINHLNC 369
ILSGPPINW+K +GW+RT +DLN EQT IE VA+SLCW+K+ ++ D+AIW+KP NH++C
Sbjct: 307 ILSGPPINWQKRWKGWERTMDDLNAEQTQIEQVARSLCWKKVVQRDDLAIWQKPFNHIDC 366
Query: 370 KTNQKLSQNPPFCPV-QDPDKAWYTQMGTCLTRLPEV--SSDRET-AGGELAKWPQRLNA 425
K +++ +NP FC QDPD AWYT+M +CLT LPEV + D +T AGG++ KWP RLNA
Sbjct: 367 KKTREVLKNPEFCRHDQDPDMAWYTKMDSCLTPLPEVDDAEDLKTVAGGKVEKWPARLNA 426
Query: 426 VPPRISKGTVKGITPEIFQQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAA 485
+PPR++KG ++ ITPE F +N++LWK+R+SYYK ++ QLG++GRYRN++DMNA+LGGFAA
Sbjct: 427 IPPRVNKGALEEITPEAFLENTKLWKQRVSYYKKLDYQLGETGRYRNLVDMNAYLGGFAA 486
Query: 486 ALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYPRTYDLIHADSVFSLY 545
AL D PVWVMNVVP EAK+NTLGVIYERGL+GTY NWCEAMSTYPRTYD IHADSVF+LY
Sbjct: 487 ALADDPVWVMNVVPVEAKLNTLGVIYERGLIGTYQNWCEAMSTYPRTYDFIHADSVFTLY 546
Query: 546 KDRCETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQIVDHEDGPLEREK 605
+ +CE E+ILLEMDRILRP GGVI RDDVD L+KVK + L+W+ +I DHE GP EREK
Sbjct: 547 QGQCEPEEILLEMDRILRPGGGVIIRDDVDVLIKVKELTKGLEWEGRIADHEKGPHEREK 606
Query: 606 LLFAVKLYWTAPA-EETASESS 626
+ +AVK YWT PA +E + +S
Sbjct: 607 IYYAVKQYWTVPAPDEDKNNTS 628
|
|
| TAIR|locus:2196651 AT1G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1947 (690.4 bits), Expect = 4.3e-204, Sum P(2) = 4.3e-204
Identities = 340/553 (61%), Positives = 435/553 (78%)
Query: 68 PKTIDFTAHH-VAATSSEAVMKTYPLCNISYSEYTPCQDGKRSLKFSRRRLIYRERHCPA 126
P +DF +HH + + +K + C++S SEYTPC+D +R +F R + YRERHCP+
Sbjct: 87 PVELDFESHHKLELKITNQTVKYFEPCDMSLSEYTPCEDRERGRRFDRNMMKYRERHCPS 146
Query: 127 KSELLKCRVPAPYGYRNPFAWPTSRDLVWYANVPHKELTVEKAVQNWIRYEGDRFRFPGG 186
K ELL C +P P Y+ PF WP SRD WY N+PHKEL++EKA+QNWI+ EG+RFRFPGG
Sbjct: 147 KDELLYCLIPPPPNYKIPFKWPQSRDYAWYDNIPHKELSIEKAIQNWIQVEGERFRFPGG 206
Query: 187 GTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSRNIITMSFAPRDTHE 246
GTMFP GADAYIDDI +LI L DG+IRTAIDTGCGVAS+GAYLL R+I+ MSFAPRDTHE
Sbjct: 207 GTMFPRGADAYIDDIARLIPLTDGAIRTAIDTGCGVASFGAYLLKRDIVAMSFAPRDTHE 266
Query: 247 AQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPG 306
AQVQFALERGVPA+IG++ + RLPYP+RAFD+AHCSRCLIPW Q G+YL EVDRVLRPG
Sbjct: 267 AQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPWFQNDGLYLTEVDRVLRPG 326
Query: 307 GYWILSGPPINWKKHARGWQRTKEDLNKEQTAIENVAKSLCWEKIKEKGDIAIWRKPINH 366
GYWILSGPPINWKK+ +GW+R++EDL +EQ +IE+ A+SLCW+K+ EKGD++IW+KPINH
Sbjct: 327 GYWILSGPPINWKKYWKGWERSQEDLKQEQDSIEDAARSLCWKKVTEKGDLSIWQKPINH 386
Query: 367 LNCKTNQKLSQNPPFCPVQD-PDKAWYTQMGTCLTRLPEVSSDRETAGGELAKWPQRLNA 425
+ C +++ + PP C D PD AWY + +C+T LPE +S E AGG L WP R A
Sbjct: 387 VECNKLKRVHKTPPLCSKSDLPDFAWYKDLESCVTPLPEANSSDEFAGGALEDWPNRAFA 446
Query: 426 VPPRISKGTVKGITPEIFQQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAA 485
VPPRI GT+ I E F++++E+WK+R+SYYK + +L + GR+RNI+DMNA+LGGFAA
Sbjct: 447 VPPRIIGGTIPDINAEKFREDNEVWKERISYYKQIMPELSR-GRFRNIMDMNAYLGGFAA 505
Query: 486 ALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYPRTYDLIHADSVFSLY 545
A++ +P WVMNVVP +A+ TLGVI+ERG +GTY +WCE STYPRTYDLIHA +FS+Y
Sbjct: 506 AMMKYPSWVMNVVPVDAEKQTLGVIFERGFIGTYQDWCEGFSTYPRTYDLIHAGGLFSIY 565
Query: 546 KDRCETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQIVDHEDGPLEREK 605
++RC+ ILLEMDRILRPEG V+FRD V+ L K++ I + ++W+S+I+DHE GP EK
Sbjct: 566 ENRCDVTLILLEMDRILRPEGTVVFRDTVEMLTKIQSITNGMRWKSRILDHERGPFNPEK 625
Query: 606 LLFAVKLYWTAPA 618
+L AVK YWT P+
Sbjct: 626 ILLAVKSYWTGPS 638
|
|
| TAIR|locus:2127711 AT4G10440 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1972 (699.2 bits), Expect = 7.9e-204, P = 7.9e-204
Identities = 354/613 (57%), Positives = 456/613 (74%)
Query: 19 LTLILF---LCIFSYLFGLWQHGGXXXXXXXXXXXXXVVDIACSXXXXXXXXPKTIDFTA 75
LTLIL LCI Y+ G WQ + + S +DF +
Sbjct: 19 LTLILGVSGLCILFYVLGAWQ-ANTVPSSISKLGCETQSNPSSSSSSSSSSESAELDFKS 77
Query: 76 HH-VAATSSEAVMKTYPLCNISYSEYTPCQDGKRSLKFSRRRLIYRERHCPAKSELLKCR 134
H+ + + +K + C +S SEYTPC+D +R +F R + YRERHCP K ELL C
Sbjct: 78 HNQIELKETNQTIKYFEPCELSLSEYTPCEDRQRGRRFDRNMMKYRERHCPVKDELLYCL 137
Query: 135 VPAPYGYRNPFAWPTSRDLVWYANVPHKELTVEKAVQNWIRYEGDRFRFPGGGTMFPNGA 194
+P P Y+ PF WP SRD WY N+PHKEL+VEKAVQNWI+ EGDRFRFPGGGTMFP GA
Sbjct: 138 IPPPPNYKIPFKWPQSRDYAWYDNIPHKELSVEKAVQNWIQVEGDRFRFPGGGTMFPRGA 197
Query: 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSRNIITMSFAPRDTHEAQVQFALE 254
DAYIDDI +LI L DG IRTAIDTGCGVAS+GAYLL R+I+ +SFAPRDTHEAQVQFALE
Sbjct: 198 DAYIDDIARLIPLTDGGIRTAIDTGCGVASFGAYLLKRDIMAVSFAPRDTHEAQVQFALE 257
Query: 255 RGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314
RGVPA+IG++ + RLPYP+RAFD+AHCSRCLIPW + G+YL+EVDRVLRPGGYWILSGP
Sbjct: 258 RGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPWFKNDGLYLMEVDRVLRPGGYWILSGP 317
Query: 315 PINWKKHARGWQRTKEDLNKEQTAIENVAKSLCWEKIKEKGDIAIWRKPINHLNCKTNQK 374
PINWK++ RGW+RT+EDL KEQ +IE+VAKSLCW+K+ EKGD++IW+KP+NH+ CK ++
Sbjct: 318 PINWKQYWRGWERTEEDLKKEQDSIEDVAKSLCWKKVTEKGDLSIWQKPLNHIECKKLKQ 377
Query: 375 LSQNPPFCPVQDPDKAWYTQMGTCLTRLPEVSSDRETAGGELAKWPQRLNAVPPRISKGT 434
+++PP C + D AWY + TC+T LPE ++ ++AGG L WP R AVPPRI +GT
Sbjct: 378 NNKSPPICSSDNADSAWYKDLETCITPLPETNNPDDSAGGALEDWPDRAFAVPPRIIRGT 437
Query: 435 VKGITPEIFQQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWV 494
+ + E F++++E+WK+R+++YK + +L GR+RNI+DMNA LGGFAA+++ +P WV
Sbjct: 438 IPEMNAEKFREDNEVWKERIAHYKKIVPELSH-GRFRNIMDMNAFLGGFAASMLKYPSWV 496
Query: 495 MNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYPRTYDLIHADSVFSLYKDRCETEDI 554
MNVVP +A+ TLGVIYERGL+GTY +WCE STYPRTYD+IHA +FSLY+ RC+ I
Sbjct: 497 MNVVPVDAEKQTLGVIYERGLIGTYQDWCEGFSTYPRTYDMIHAGGLFSLYEHRCDLTLI 556
Query: 555 LLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQIVDHEDGPLEREKLLFAVKLYW 614
LLEMDRILRPEG V+ RD+V+ L KV++I+ +KW+SQIVDHE GP EK+L AVK YW
Sbjct: 557 LLEMDRILRPEGTVVLRDNVETLNKVEKIVKGMKWKSQIVDHEKGPFNPEKILVAVKTYW 616
Query: 615 TA-PAEETASESS 626
T P+++ + ++
Sbjct: 617 TGQPSDKNNNNNN 629
|
|
| TAIR|locus:2202805 AT1G26850 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1885 (668.6 bits), Expect = 1.3e-194, P = 1.3e-194
Identities = 353/626 (56%), Positives = 438/626 (69%)
Query: 1 MAGPKPSKPSIIRTNVYSLTLILFLCIFSYLFGLWQHGGXXXXXXXXXXXXXVVDIACSX 60
MA S R++V + ++ LC F Y+ G WQ G + + +
Sbjct: 1 MALKSSSADGKTRSSV-QIFIVFSLCCFFYILGAWQRSGFGKGDS--------IALEMTN 51
Query: 61 XXXXXXXPKTIDFTAHHVAATS----SEAV-MKTYPLCNISYSEYTPCQDGKRSLKFSRR 115
+++F HH +S SEA +K + C+ Y++YTPCQD +R++ F R
Sbjct: 52 SGADCNIVPSLNFETHHAGESSLVGASEAAKVKAFEPCDGRYTDYTPCQDQRRAMTFPRD 111
Query: 116 RLIYRERHCPAKSELLKCRVPAPYGYRNPFAWPTSRDLVWYANVPHKELTVEKAVQNWIR 175
+IYRERHC ++E L C +PAP GY PF+WP SRD V YAN P+K LTVEKA+QNWI+
Sbjct: 112 SMIYRERHCAPENEKLHCLIPAPKGYVTPFSWPKSRDYVPYANAPYKALTVEKAIQNWIQ 171
Query: 176 YEGDRFRFPGGGTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSRNII 235
YEGD FRFPGGGT FP GAD YID + +I + +G++RTA+DTGCGVASWGAYL SRN+
Sbjct: 172 YEGDVFRFPGGGTQFPQGADKYIDQLASVIPMENGTVRTALDTGCGVASWGAYLWSRNVR 231
Query: 236 TMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIY 295
MSFAPRD+HEAQVQFALERGVPA+IGVL +LPYP+RAFDMAHCSRCLIPW G+Y
Sbjct: 232 AMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPTRAFDMAHCSRCLIPWGANDGMY 291
Query: 296 LIEVDRVLRPGGYWILSGPPINWKKHARGWQRTKEDLNKEQTAIENVAKSLCWEKIKEKG 355
L+EVDRVLRPGGYWILSGPPINWK + + WQR KEDL +EQ IE AK LCWEK E G
Sbjct: 292 LMEVDRVLRPGGYWILSGPPINWKVNYKAWQRPKEDLQEEQRKIEEAAKLLCWEKKYEHG 351
Query: 356 DIAIWRKPINHLNCKTNQKLSQNPPFCPVQDPDKAWYTQMGTCLTRLPEVSSDRETAGGE 415
+IAIW+K +N C++ Q FC D D WY +M C+T PE SS E AGGE
Sbjct: 352 EIAIWQKRVNDEACRSRQD-DPRANFCKTDDTDDVWYKKMEACITPYPETSSSDEVAGGE 410
Query: 416 LAKWPQRLNAVPPRISKGTVKGITPEIFQQNSELWKKRLSYYKTMNNQLGQSGRYRNILD 475
L +P RLNAVPPRIS G++ G+T + ++ ++ WKK + YK +N+ L +GRYRNI+D
Sbjct: 411 LQAFPDRLNAVPPRISSGSISGVTVDAYEDDNRQWKKHVKAYKRINSLL-DTGRYRNIMD 469
Query: 476 MNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYPRTYDL 535
MNA GGFAAAL +WVMNVVP A+ N LGV+YERGL+G Y +WCEA STYPRTYDL
Sbjct: 470 MNAGFGGFAAALESQKLWVMNVVPTIAEKNRLGVVYERGLIGIYHDWCEAFSTYPRTYDL 529
Query: 536 IHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQIVD 595
IHA+ +FSLYK++C +DILLEMDRILRPEG VI RDDVD L+KVKRII ++W +++VD
Sbjct: 530 IHANHLFSLYKNKCNADDILLEMDRILRPEGAVIIRDDVDTLIKVKRIIAGMRWDAKLVD 589
Query: 596 HEDGPLEREKLLFAVKLYWTAPAEET 621
HEDGPL EK+L AVK YW + T
Sbjct: 590 HEDGPLVPEKVLIAVKQYWVTNSTST 615
|
|
| TAIR|locus:2141035 AT4G18030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1822 (646.4 bits), Expect = 6.2e-188, P = 6.2e-188
Identities = 346/628 (55%), Positives = 434/628 (69%)
Query: 3 GPKPSKPSIIRT-NVYSLTLILFLCIFSYLFGLWQHGGXXXXXXXXXXXXXVVDIACSXX 61
G K + P R+ + SL +++ LC F YL G WQ G C+
Sbjct: 2 GSKHNPPGNNRSRSTLSLLVVVGLCCFFYLLGAWQKSGFGKGDSIAMEITKQAQ--CTDI 59
Query: 62 XXXXXXPKTIDFTAHH-VAATSSEAVMK--TYPLCNISYSEYTPCQDGKRSLKFSRRRLI 118
+DF HH +A K ++ C++ +YTPCQ+ R++KF R +I
Sbjct: 60 VTD------LDFEPHHNTVKIPHKADPKPVSFKPCDVKLKDYTPCQEQDRAMKFPRENMI 113
Query: 119 YRERHCPAKSELLKCRVPAPYGYRNPFAWPTSRDLVWYANVPHKELTVEKAVQNWIRYEG 178
YRERHCP +E L+C VPAP GY PF WP SRD V YAN P K LTVEKA QNW++++G
Sbjct: 114 YRERHCPPDNEKLRCLVPAPKGYMTPFPWPKSRDYVHYANAPFKSLTVEKAGQNWVQFQG 173
Query: 179 DRFRFPGGGTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSRNIITMS 238
+ F+FPGGGTMFP GADAYI+++ +I + DGS+RTA+DTGCGVASWGAY+L RN++TMS
Sbjct: 174 NVFKFPGGGTMFPQGADAYIEELASVIPIKDGSVRTALDTGCGVASWGAYMLKRNVLTMS 233
Query: 239 FAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIE 298
FAPRD HEAQVQFALERGVPA+I VL + LPYP+RAFDMA CSRCLIPW G YL+E
Sbjct: 234 FAPRDNHEAQVQFALERGVPAIIAVLGSILLPYPARAFDMAQCSRCLIPWTANEGTYLME 293
Query: 299 VDRVLRPGGYWILSGPPINWKKHARGWQRTKEDLNKEQTAIENVAKSLCWEKIKEKGDIA 358
VDRVLRPGGYW+LSGPPINWK + W RTK +LN EQ IE +A+SLCWEK EKGDIA
Sbjct: 294 VDRVLRPGGYWVLSGPPINWKTWHKTWNRTKAELNAEQKRIEGIAESLCWEKKYEKGDIA 353
Query: 359 IWRKPINHLNCKTNQKLSQNPPFCPVQDPDKAWYTQMGTCLTRLPEVSSDRETAGGELAK 418
I+RK IN +C + + C +D D WY ++ TC+T P+VS++ E AGG+L K
Sbjct: 354 IFRKKINDRSCDRSTPVDT----CKRKDTDDVWYKEIETCVTPFPKVSNEEEVAGGKLKK 409
Query: 419 WPQRLNAVPPRISKGTVKGITPEIFQQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNA 478
+P+RL AVPP ISKG + G+ E +Q++ LWKKR++ YK +N +G S RYRN++DMNA
Sbjct: 410 FPERLFAVPPSISKGLINGVDEESYQEDINLWKKRVTGYKRINRLIG-STRYRNVMDMNA 468
Query: 479 HLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYPRTYDLIHA 538
LGGFAAAL WVMNV+P K NTL V+YERGL+G Y +WCE STYPRTYD IHA
Sbjct: 469 GLGGFAAALESPKSWVMNVIPTINK-NTLSVVYERGLIGIYHDWCEGFSTYPRTYDFIHA 527
Query: 539 DSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQIVDHED 598
VFSLY+ C+ EDILLE DRILRPEG VIFRD+VD L V++I+D ++W ++++DHED
Sbjct: 528 SGVFSLYQHSCKLEDILLETDRILRPEGIVIFRDEVDVLNDVRKIVDGMRWDTKLMDHED 587
Query: 599 GPLEREKLLFAVKLYWTAPAEETASESS 626
GPL EK+L A K YW A + S SS
Sbjct: 588 GPLVPEKILVATKQYWVAGDDGNNSPSS 615
|
|
| TAIR|locus:2041031 AT2G43200 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1526 (542.2 bits), Expect = 1.4e-156, P = 1.4e-156
Identities = 278/528 (52%), Positives = 362/528 (68%)
Query: 81 TSSEAVMKTYPLCNISYSEYTPCQDGKRSLKFSRRRLIYRERHCP-AKSELLKCRVPAPY 139
+SS ++ +PLC +++ Y PC D + ++S R RERHCP E +C VP P
Sbjct: 82 SSSSSLSSYFPLCPKNFTNYLPCHDPSTARQYSIERHYRRERHCPDIAQEKFRCLVPKPT 141
Query: 140 GYRNPFAWPTSRDLVWYANVPHKELTVEKAVQNWIRYEGDRFRFPGGGTMFPNGADAYID 199
GY+ PF WP SR W+ NVP K L K QNW+R EGDRF FPGGGT FP G Y+D
Sbjct: 142 GYKTPFPWPESRKYAWFRNVPFKRLAELKKTQNWVRLEGDRFVFPGGGTSFPGGVKDYVD 201
Query: 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSRNIITMSFAPRDTHEAQVQFALERGVPA 259
I ++ L GSIRT +D GCGVAS+GA+LL+ I+TMS APRD HEAQVQFALERG+PA
Sbjct: 202 VILSVLPLASGSIRTVLDIGCGVASFGAFLLNYKILTMSIAPRDIHEAQVQFALERGLPA 261
Query: 260 LIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPPINWK 319
++GVL+ +LPYPSR+FDM HCSRCL+ W + G+YL+EVDRVLRP GYW+LSGPP+ +
Sbjct: 262 MLGVLSTYKLPYPSRSFDMVHCSRCLVNWTSYDGLYLMEVDRVLRPEGYWVLSGPPVASR 321
Query: 320 KHARGWQRTKEDLNKEQTAIENVAKSLCWEKIKEKGDIAIWRKPINHLNCKTNQKLSQNP 379
+ +R ++L + + +V + LCWEKI E + IWRKP NHL C+ K + P
Sbjct: 322 VKFKNQKRDSKELQNQMEKLNDVFRRLCWEKIAESYPVVIWRKPSNHLQCRKRLKALKFP 381
Query: 380 PFCPVQDPDKAWYTQMGTCLTRLPEVSSDRETAGGELAKWPQRLNAVPPRISKGTVKGIT 439
C DPD AWY +M C+T LP+V+ +T L WP+RLN VP R+ G+++G T
Sbjct: 382 GLCSSSDPDAAWYKEMEPCITPLPDVNDTNKTV---LKNWPERLNHVP-RMKTGSIQGTT 437
Query: 440 PEIFQQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVP 499
F+ ++ LW++R+ YY T L +G+YRN++DMNA LGGFAAALI +P+WVMNVVP
Sbjct: 438 IAGFKADTNLWQRRVLYYDTKFKFLS-NGKYRNVIDMNAGLGGFAAALIKYPMWVMNVVP 496
Query: 500 AEAKINTLGVIYERGLVGTYTNWCEAMSTYPRTYDLIHADSVFSLYKDRCETEDILLEMD 559
+ K NTLGV+Y+RGL+GTY NWCEA+STYPRTYDLIHA+ VFSLY D+C+ DILLEM
Sbjct: 497 FDLKPNTLGVVYDRGLIGTYMNWCEALSTYPRTYDLIHANGVFSLYLDKCDIVDILLEMQ 556
Query: 560 RILRPEGGVIFRDDVDELVKVKRIIDALKWQSQIVDHEDGPLEREKLL 607
RILRPEG VI RD D LVKVK I + ++W + ++ + +L
Sbjct: 557 RILRPEGAVIIRDRFDVLVKVKAITNQMRWNGTMYPEDNSVFDHGTIL 604
|
|
| TAIR|locus:2034522 AT1G31850 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1382 (491.5 bits), Expect = 2.6e-141, P = 2.6e-141
Identities = 253/540 (46%), Positives = 360/540 (66%)
Query: 80 ATSSEAVMKTYPLCNISYSEYTPCQDGKRSLKFSRRRLIYRERHCPAKSELLKCRVPAPY 139
AT + ++P C + +YTPC D KR K+ RL + ERHCP E +C +P P
Sbjct: 66 ATPIQIKSVSFPECGSEFQDYTPCTDPKRWKKYGVHRLSFLERHCPPVYEKNECLIPPPD 125
Query: 140 GYRNPFAWPTSRDLVWYANVPHKELTVEKAVQNWIRYEGDRFRFPGGGTMFPNGADAYID 199
GY+ P WP SR+ WY NVP+ + +K+ Q+W++ EGD+F FPGGGTMFP G Y+D
Sbjct: 126 GYKPPIRWPKSREQCWYRNVPYDWINKQKSNQHWLKKEGDKFHFPGGGTMFPRGVSHYVD 185
Query: 200 DIGKLI-NLNDGSIRTAIDTGCGVASWGAYLLSRNIITMSFAPRDTHEAQVQFALERGVP 258
+ LI + DG++RTAIDTGCGVASWG LL R I+++S APRD HEAQVQFALERG+P
Sbjct: 186 LMQDLIPEMKDGTVRTAIDTGCGVASWGGDLLDRGILSLSLAPRDNHEAQVQFALERGIP 245
Query: 259 ALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPPINW 318
A++G+++ +RLP+PS AFDMAHCSRCLIPW +FGGIYL+E+ R++RPGG+W+LSGPP+N+
Sbjct: 246 AILGIISTQRLPFPSNAFDMAHCSRCLIPWTEFGGIYLLEIHRIVRPGGFWVLSGPPVNY 305
Query: 319 KKHARGWQRTKEDLNKEQTAIENVAKSLCWEKIKEKGDIAIWRKPINHLNC--KTNQKLS 376
+ RGW T ED + ++++ S+C++K +K DIA+W+K ++ +C K + +
Sbjct: 306 NRRWRGWNTTMEDQKSDYNKLQSLLTSMCFKKYAQKDDIAVWQK-LSDKSCYDKIAKNME 364
Query: 377 QNPPFCPVQ-DPDKAWYTQMGTCLTR-LPEVSSDRETAGGELAKWPQRLNAVPPRISKGT 434
PP C +PD AWYT + C+ P+V +++ G + KWP+RL+ P RI G
Sbjct: 365 AYPPKCDDSIEPDSAWYTPLRPCVVAPTPKV---KKSGLGSIPKWPERLHVAPERI--GD 419
Query: 435 VKGITPEIFQQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWV 494
V G + + + WK R+ +YK + LG + + RN++DMN GGF+AALI+ P+WV
Sbjct: 420 VHGGSANSLKHDDGKWKNRVKHYKKVLPALG-TDKIRNVMDMNTVYGGFSAALIEDPIWV 478
Query: 495 MNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYPRTYDLIHADSVFSLYKDRCETEDI 554
MNVV + + N+L V+++RGL+GTY +WCEA STYPRTYDL+H DS+F+L RCE + I
Sbjct: 479 MNVVSSYSA-NSLPVVFDRGLIGTYHDWCEAFSTYPRTYDLLHLDSLFTLESHRCEMKYI 537
Query: 555 LLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQIVDHEDGPLEREKLLFAVKLYW 614
LLEMDRILRP G VI R+ + + + ++W + + E ++ EK+L K W
Sbjct: 538 LLEMDRILRPSGYVIIRESSYFMDAITTLAKGIRWSCRREETEYA-VKSEKILVCQKKLW 596
|
|
| TAIR|locus:2134756 ERD3 "early-responsive to dehydration 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1346 (478.9 bits), Expect = 1.7e-137, P = 1.7e-137
Identities = 247/525 (47%), Positives = 341/525 (64%)
Query: 93 CNISYSEYTPCQDGKRSLKFSRRRLIYRERHCPAKSELLKCRVPAPYGYRNPFAWPTSRD 152
C+ Y +YTPC D ++ K+ RL + ERHCP + +C VP P GY+ P WP S+D
Sbjct: 73 CSSDYQDYTPCTDPRKWKKYGTHRLTFMERHCPPVFDRKQCLVPPPDGYKPPIRWPKSKD 132
Query: 153 LVWYANVPHKELTVEKAVQNWIRYEGDRFRFPGGGTMFPNGADAYIDDIGKLI-NLNDGS 211
WY NVP+ + +K+ QNW+R EG++F FPGGGTMFP+G AY+D + LI + DG+
Sbjct: 133 ECWYRNVPYDWINKQKSNQNWLRKEGEKFIFPGGGTMFPHGVSAYVDLMQDLIPEMKDGT 192
Query: 212 IRTAIDTGCGVASWGAYLLSRNIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPY 271
IRTAIDTGCGVASWG LL R I+T+S APRD HEAQVQFALERG+PA++G+++ +RLP+
Sbjct: 193 IRTAIDTGCGVASWGGDLLDRGILTVSLAPRDNHEAQVQFALERGIPAILGIISTQRLPF 252
Query: 272 PSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPPINWKKHARGWQRTKED 331
PS +FDMAHCSRCLIPW +FGG+YL+EV R+LRPGG+W+LSGPP+N++ +GW T E+
Sbjct: 253 PSNSFDMAHCSRCLIPWTEFGGVYLLEVHRILRPGGFWVLSGPPVNYENRWKGWDTTIEE 312
Query: 332 LNKEQTAIENVAKSLCWEKIKEKGDIAIWRK-PINHLNCKTNQKLSQNPPFCPVQ-DPDK 389
++ + S+C++ +K DIA+W+K P N K + PP C +PD
Sbjct: 313 QRSNYEKLQELLSSMCFKMYAKKDDIAVWQKSPDNLCYNKLSNDPDAYPPKCDDSLEPDS 372
Query: 390 AWYTQMGTCLTRLPEVSSDRETAGGELAKWPQRLNAVPPRISKGTVKGITPEIFQQNSEL 449
AWYT + C+ +P ++T KWP+RL+ P RIS V G +F+ +
Sbjct: 373 AWYTPLRPCVV-VPSPKL-KKTDLESTPKWPERLHTTPERISD--VPGGNGNVFKHDDSK 428
Query: 450 WKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGV 509
WK R +YK + +G S + RN++DMN GG AAAL++ P+WVMNVV + A NTL V
Sbjct: 429 WKTRAKHYKKLLPAIG-SDKIRNVMDMNTAYGGLAAALVNDPLWVMNVVSSYAA-NTLPV 486
Query: 510 IYERGLVGTYTNWCEAMSTYPRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVI 569
+++RGL+GTY +WCEA STYPRTYDL+H D +F+ RC+ + ++LEMDRILRP G I
Sbjct: 487 VFDRGLIGTYHDWCEAFSTYPRTYDLLHVDGLFTSESQRCDMKYVMLEMDRILRPSGYAI 546
Query: 570 FRDDVDELVKVKRIIDALKWQSQIVDHEDGPLEREKLLFAVKLYW 614
R+ + + L+W + + + EKLL K W
Sbjct: 547 IRESSYFADSIASVAKELRWSCR-KEQTESASANEKLLICQKKLW 590
|
|
| TAIR|locus:2117733 QUA3 "QUASIMODO 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1245 (443.3 bits), Expect = 8.7e-127, P = 8.7e-127
Identities = 245/547 (44%), Positives = 334/547 (61%)
Query: 81 TSSEAVMKTYPL--CNISYSEYTPCQDGKRSLKFSRRRLIYRERHCPAKSELLKCRVPAP 138
T EA P+ C + PC+D +R+ + SR YRERHCP E C +P P
Sbjct: 70 TLVEAGQHLQPIEYCPAEAVAHMPCEDPRRNSQLSREMNFYRERHCPLPEETPLCLIPPP 129
Query: 139 YGYRNPFAWPTSRDLVWYANVPHKELTVEKAVQNWIRYEGDRFRFPGGGTMFPNGADAYI 198
GY+ P WP S +W+AN+P+ ++ K Q W++ EG+ F FPGGGTMFP GA YI
Sbjct: 130 SGYKIPVPWPESLHKIWHANMPYNKIADRKGHQGWMKREGEYFTFPGGGTMFPGGAGQYI 189
Query: 199 DDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSRNIITMSFAPRDTHEAQVQFALERGVP 258
+ + + I LN G++RTA+D GCGVAS+G LLS+ I+ +SFAPRD+H++Q+QFALERGVP
Sbjct: 190 EKLAQYIPLNGGTLRTALDMGCGVASFGGTLLSQGILALSFAPRDSHKSQIQFALERGVP 249
Query: 259 ALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPPINW 318
A + +L RLP+P+ +FD+ HCSRCLIP+ + Y IEVDR+LRPGGY ++SGPP+ W
Sbjct: 250 AFVAMLGTRRLPFPAYSFDLMHCSRCLIPFTAYNATYFIEVDRLLRPGGYLVISGPPVQW 309
Query: 319 KKHARGWQRTKEDLNKEQTAIENVAKSLCWEKIKEKGDIAIWRKPINHLNCKTNQKLSQN 378
K + W DL + VA++LC+E I G+ IW+KP+ +C +Q
Sbjct: 310 PKQDKEWA----DL-------QAVARALCYELIAVDGNTVIWKKPVGD-SCLPSQN-EFG 356
Query: 379 PPFCPVQ-DPDKAWYTQMGTCLTRLPEVSSDRETAGGELAKWPQRLNAVPPRISKGTVKG 437
C P AWY ++ C+TR V E A G ++KWP+RL VP S+ V
Sbjct: 357 LELCDESVPPSDAWYFKLKRCVTRPSSVKG--EHALGTISKWPERLTKVP---SRAIVMK 411
Query: 438 ITPEIFQQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNV 497
++F+ ++ W +R++YY+ N +S RN++DMNA GGFAA L PVWVMNV
Sbjct: 412 NGLDVFEADARRWARRVAYYRDSLNLKLKSPTVRNVMDMNAFFGGFAATLASDPVWVMNV 471
Query: 498 VPAEAKINTLGVIYERGLVGTYTNWCEAMSTYPRTYDLIHADSVFSLYK------DRCET 551
+PA + TL VIY+RGL+G Y +WCE STYPRTYD IH + SL K RC
Sbjct: 472 IPARKPL-TLDVIYDRGLIGVYHDWCEPFSTYPRTYDFIHVSGIESLIKRQDSSKSRCSL 530
Query: 552 EDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQIVDHEDGPLEREKLLFAVK 611
D+++EMDRILRPEG V+ RD + L KV R+ A++W S I + E REK+L A K
Sbjct: 531 VDLMVEMDRILRPEGKVVIRDSPEVLDKVARMAHAVRWSSSIHEKEPESHGREKILIATK 590
Query: 612 LYWTAPA 618
W P+
Sbjct: 591 SLWKLPS 597
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9ZPH9 | PMTF_ARATH | 2, ., 1, ., 1, ., - | 0.6456 | 0.9712 | 0.9605 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 626 | |||
| pfam03141 | 506 | pfam03141, Methyltransf_29, Putative S-adenosyl-L- | 0.0 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 7e-06 |
| >gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase | Back alignment and domain information |
|---|
Score = 872 bits (2256), Expect = 0.0
Identities = 312/518 (60%), Positives = 384/518 (74%), Gaps = 17/518 (3%)
Query: 99 EYTPCQDGKRSLKF--SRRRLIYRERHCPAKSELLKCRVPAPYGYRNPFAWPTSRDLVWY 156
+Y PC D R++KF SR R+ +RERHCP E L+C VP P GY+ P WP SRD VWY
Sbjct: 1 DYIPCLDNDRAIKFLLSRERMEHRERHCPPSEEKLRCLVPPPDGYKTPIPWPKSRDKVWY 60
Query: 157 ANVPHKELTVEKAVQNWIRYEGDRFRFPGGGTMFPNGADAYIDDIGKLINL--NDGSIRT 214
ANVPH +L EK QNW++ EGD+FRFPGGGT FP+GADAYID + ++I G +RT
Sbjct: 61 ANVPHTKLAEEKGGQNWVKVEGDKFRFPGGGTQFPHGADAYIDFLAQMIPDIAWGGRVRT 120
Query: 215 AIDTGCGVASWGAYLLSRNIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSR 274
A+D GCGVAS+GAYLLSR+++TMSFAP+D HEAQVQFALERGVPA++GVL RLPYPSR
Sbjct: 121 ALDVGCGVASFGAYLLSRDVLTMSFAPKDVHEAQVQFALERGVPAMLGVLGTRRLPYPSR 180
Query: 275 AFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPPINWKKHARGWQRTKEDLNK 334
+FDMAHCSRCLIPW+ GI L+EVDRVLRPGGY++LSGPP+ R +EDL +
Sbjct: 181 SFDMAHCSRCLIPWHANDGILLLEVDRVLRPGGYFVLSGPPVY--------ARDEEDLQE 232
Query: 335 EQTAIENVAKSLCWEKIKEKGDIAIWRKPINHLNCKTNQKLSQNPPFCPV-QDPDKAWYT 393
E A+E +AKSLCW+ + +KGDIAIW+KP+N+ +C ++ + PP C DPD AWY
Sbjct: 233 EWKAMEALAKSLCWKLVAKKGDIAIWQKPVNN-SCYNKREPGKKPPLCKDSDDPDAAWYV 291
Query: 394 QMGTCLTRLPEVSSDRETAGGELAKWPQRLNAVPPRISKGTVKGITPEIFQQNSELWKKR 453
M C+T LPEVS E GG L KWP+RL AVPPR++ G + G++ E F+ ++ELWK+R
Sbjct: 292 PMEACITPLPEVSH--EVGGGWLEKWPERLTAVPPRLASGQIGGVSAEAFKADTELWKRR 349
Query: 454 LSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER 513
+S YK + L GR RN++DMNA GGFAAALID PVWVMNVVP +TL VIY+R
Sbjct: 350 VSKYKRLLKLLIDKGRVRNVMDMNAGFGGFAAALIDDPVWVMNVVPV-DSPDTLPVIYDR 408
Query: 514 GLVGTYTNWCEAMSTYPRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDD 573
GL+G Y +WCE STYPRTYDL+HAD +FSLYK RC EDILLEMDRILRP G VI RDD
Sbjct: 409 GLIGIYHDWCEPFSTYPRTYDLLHADHLFSLYKKRCNLEDILLEMDRILRPGGAVIIRDD 468
Query: 574 VDELVKVKRIIDALKWQSQIVDHEDGPLEREKLLFAVK 611
VD L KVK+I A++W+ +I D EDGP + EK+L A K
Sbjct: 469 VDVLDKVKKIAKAMRWEVRITDTEDGPHDPEKILIAQK 506
|
This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 7e-06
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 16/99 (16%)
Query: 216 IDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYP 272
+D GCG L R + + D + A +R + V AE LP+P
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGV-----DLSPEMLALARKRAPRKFV-VGDAEDLPFP 54
Query: 273 SRAFDMAHCSRCL--IP-WNQFGGIYLIEVDRVLRPGGY 308
+FD+ S L +P + L E+ RVL+PGG
Sbjct: 55 DESFDVVVSSLVLHHLPDPERA----LREIARVLKPGGK 89
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 626 | |||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 100.0 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 99.95 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.87 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.58 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.54 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.53 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.45 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.42 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.42 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.41 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.37 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.37 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.36 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.33 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.31 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.29 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.28 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.27 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.25 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.25 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.25 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.25 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.25 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.25 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.22 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.22 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.22 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.21 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.2 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.2 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.19 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.19 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.18 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.18 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.17 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.17 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.16 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.16 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.15 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.14 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.14 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.12 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.12 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.11 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.11 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.09 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.08 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.07 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.07 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.06 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.05 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.05 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.04 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.04 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.03 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.02 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.02 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.02 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.02 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.01 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.01 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.01 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.99 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 98.98 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 98.97 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 98.97 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 98.96 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 98.96 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 98.95 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 98.95 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 98.95 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.95 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 98.94 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.94 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 98.94 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 98.93 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 98.92 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 98.92 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 98.91 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 98.91 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 98.91 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.91 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 98.9 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 98.9 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.9 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 98.9 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.9 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 98.89 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.89 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 98.88 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 98.88 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 98.88 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 98.88 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 98.87 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.87 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.87 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 98.86 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 98.85 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 98.85 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 98.85 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 98.84 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.83 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 98.83 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 98.82 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 98.82 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 98.81 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.81 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.81 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.8 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 98.8 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.8 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.79 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.79 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.78 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 98.77 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 98.77 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 98.77 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.76 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.76 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 98.75 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 98.74 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 98.73 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.72 | |
| PRK04266 | 226 | fibrillarin; Provisional | 98.72 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 98.72 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.72 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.71 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.71 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.7 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 98.69 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 98.69 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.69 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.67 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 98.66 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.66 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.66 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 98.66 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 98.66 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 98.65 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.65 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.65 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 98.65 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.64 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 98.64 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.63 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 98.63 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.63 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 98.62 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.61 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.61 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 98.6 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 98.59 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.59 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.59 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.58 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.58 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 98.57 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.56 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 98.55 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 98.55 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.55 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 98.54 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.54 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.54 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 98.53 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 98.52 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 98.52 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.52 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 98.52 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.51 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 98.49 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.48 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.46 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.45 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.45 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 98.45 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.45 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.45 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.42 | |
| PRK04266 | 226 | fibrillarin; Provisional | 98.42 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.42 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 98.41 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.4 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.4 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.4 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 98.39 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.39 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.39 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.38 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.36 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.36 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 98.35 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.33 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.33 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.32 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.32 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.32 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.32 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.31 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 98.31 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 98.3 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.3 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.3 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.3 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 98.3 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.3 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.29 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.28 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.27 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 98.27 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.25 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 98.25 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.24 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.24 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.24 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.24 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.23 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.23 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 98.22 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.22 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.21 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.21 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.19 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.18 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.17 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.17 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.16 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.16 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.16 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.16 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.15 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.15 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.14 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.14 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.13 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.13 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.13 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.12 | |
| PLN02366 | 308 | spermidine synthase | 98.12 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 98.11 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.1 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 98.09 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.07 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.06 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.04 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.01 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.01 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.0 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.0 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 97.99 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 97.99 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 97.98 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 97.97 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 97.97 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 97.96 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 97.95 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 97.94 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 97.94 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 97.93 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 97.92 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.89 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.88 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.88 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 97.84 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 97.84 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 97.84 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 97.83 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.83 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 97.82 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 97.82 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 97.81 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 97.81 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.79 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 97.79 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 97.76 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.73 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.68 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.66 | |
| PLN02476 | 278 | O-methyltransferase | 97.66 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 97.64 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 97.6 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.58 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 97.58 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.58 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 97.57 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.57 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 97.57 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 97.57 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.57 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 97.55 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.55 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 97.55 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.54 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 97.54 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.53 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 97.52 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.51 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 97.51 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 97.51 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 97.51 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 97.5 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 97.5 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 97.49 | |
| PLN02823 | 336 | spermine synthase | 97.48 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 97.48 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.47 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 97.47 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.45 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 97.44 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.43 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 97.42 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 97.4 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.4 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.36 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.33 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.29 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.28 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.28 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.25 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 97.22 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 97.21 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.21 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.19 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 97.18 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.18 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 97.17 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 97.16 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.15 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.14 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 97.13 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.12 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.09 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.09 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.06 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 97.06 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.05 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.04 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.04 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.04 | |
| PLN02366 | 308 | spermidine synthase | 97.02 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.02 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 97.01 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 96.97 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 96.95 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 96.94 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 96.9 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 96.88 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 96.87 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 96.87 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 96.85 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 96.81 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 96.81 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 96.76 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 96.72 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 96.62 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 96.53 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 96.5 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 96.5 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 96.46 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 96.46 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 96.45 | |
| PLN02476 | 278 | O-methyltransferase | 96.45 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 96.42 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 96.42 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 96.41 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 96.37 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.36 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 96.32 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 96.27 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 96.21 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 96.21 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 96.18 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 96.05 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 96.04 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 96.0 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 95.94 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 95.92 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 95.92 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 95.86 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 95.85 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 95.81 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 95.78 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 95.75 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 95.69 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 95.68 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 95.62 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 95.59 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 95.55 | |
| PLN02823 | 336 | spermine synthase | 95.5 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 95.48 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 95.44 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 95.39 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 95.35 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 95.31 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 95.31 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 95.28 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 95.27 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 95.2 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 95.18 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 95.17 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 95.13 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 95.13 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 95.08 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 95.04 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 95.02 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 95.02 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 94.99 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 94.88 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 94.66 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 94.64 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 94.62 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 94.56 | |
| PRK13699 | 227 | putative methylase; Provisional | 94.5 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 94.36 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 94.19 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 94.19 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 93.96 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 93.94 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 93.92 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 93.9 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 93.9 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 93.76 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 93.63 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 93.5 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 93.44 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 93.39 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 93.11 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 93.07 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 93.02 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 92.58 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 92.45 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 92.44 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 92.43 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 91.9 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 91.62 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 91.57 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 91.39 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 91.33 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 91.22 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 91.05 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 90.92 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 90.89 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 90.77 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 90.74 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 90.58 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 90.51 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 90.39 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 90.26 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 90.18 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 89.96 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 89.95 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 89.85 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 89.76 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 89.44 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 89.26 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 89.11 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 88.93 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 88.86 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 88.65 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 88.27 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 88.25 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 88.12 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 87.66 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 87.32 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 87.13 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 87.13 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 86.93 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 86.75 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 86.69 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 86.65 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 86.21 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 86.05 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 85.73 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 85.65 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 85.61 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 85.43 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 85.15 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 85.01 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 84.96 | |
| PRK13699 | 227 | putative methylase; Provisional | 84.83 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 84.68 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 84.29 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 83.72 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 82.74 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 81.46 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 81.37 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 81.34 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 81.19 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 80.42 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 80.23 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 80.06 |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-148 Score=1187.83 Aligned_cols=500 Identities=65% Similarity=1.183 Sum_probs=485.0
Q ss_pred CcccCCCchhhhhh--hhhhhhhhccCCCCCCCCCCcccCCCCCCCCCCCCCCCcccccccCCCCchhhHHHHhhhhhhc
Q 006905 99 EYTPCQDGKRSLKF--SRRRLIYRERHCPAKSELLKCRVPAPYGYRNPFAWPTSRDLVWYANVPHKELTVEKAVQNWIRY 176 (626)
Q Consensus 99 ~y~pc~d~~~~~~~--~~~~~~~~~r~C~~~~~r~~Clvp~p~~y~~P~~wP~Srd~~w~~N~~~~~L~~~k~~q~W~~~ 176 (626)
||+||+|+.+++++ .++++.||||||||.++|++||||+|++|+.||+||+|||++||+|+||++|+.+|+.|||++.
T Consensus 1 dy~PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~ 80 (506)
T PF03141_consen 1 DYIPCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRV 80 (506)
T ss_pred CCcCCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchHHhhhcccccceee
Confidence 79999999999999 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceecCCCCCCCCCcHHHHHHHHHHhhcc--CCCCCCEEEEeCCCCchHHHHHhhCCcEEEeCCccchHHHHHHHHHH
Q 006905 177 EGDRFRFPGGGTMFPNGADAYIDDIGKLINL--NDGSIRTAIDTGCGVASWGAYLLSRNIITMSFAPRDTHEAQVQFALE 254 (626)
Q Consensus 177 ~ge~~~Fp~ggt~F~~ga~~yi~~L~~ll~l--~~~~~~~VLDIGCGtG~~a~~La~~~V~avdis~~dls~a~i~~A~e 254 (626)
+|+.+.|||||++|.+|+.+|+++|.++++. .++..+++||||||+|+|+++|++++|++|++++.+.+++++|+|.+
T Consensus 81 ~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale 160 (506)
T PF03141_consen 81 EGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE 160 (506)
T ss_pred cCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh
Confidence 9999999999999999999999999999997 67788999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEcccccCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCCCcccccccccchhhhhHH
Q 006905 255 RGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPPINWKKHARGWQRTKEDLNK 334 (626)
Q Consensus 255 rg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~pp~~w~~~~~~w~~~~e~l~~ 334 (626)
||+++.+.++..++|||++++||+|||++|+++|..+.+.+|.|++|+|||||||++++||.+ .++.+++.+
T Consensus 161 RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~--------~r~~~~~~~ 232 (506)
T PF03141_consen 161 RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY--------QRTDEDLEE 232 (506)
T ss_pred cCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCccc--------ccchHHHHH
Confidence 999999988889999999999999999999999999889999999999999999999999986 356678888
Q ss_pred HHHHHHHHHHhhchhhhcccccEEEEeccCccccccccccCCCCCCCCC-CCCCCchhhhhccccccccccCCccccccC
Q 006905 335 EQTAIENVAKSLCWEKIKEKGDIAIWRKPINHLNCKTNQKLSQNPPFCP-VQDPDKAWYTQMGTCLTRLPEVSSDRETAG 413 (626)
Q Consensus 335 ~~~~ie~l~~~l~w~~v~~~~~~aiw~KP~~~~~c~~~~~~~~~p~~C~-~~~~d~~wy~~l~~ci~~~p~~~~~~~~~~ 413 (626)
++..|++++++|||+++.++++++|||||.++ +||.+|+..+.|++|+ ++|||++||++|++||+++|++.+ +.++
T Consensus 233 ~~~~~~~l~~~lCW~~va~~~~~aIwqKp~~~-~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~--~~~~ 309 (506)
T PF03141_consen 233 EWNAMEDLAKSLCWKKVAEKGDTAIWQKPTNN-SCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSS--EIAG 309 (506)
T ss_pred HHHHHHHHHHHHHHHHheeeCCEEEEeccCCc-hhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccc--cccc
Confidence 99999999999999999999999999999998 9999998888999999 899999999999999999998755 6788
Q ss_pred CccccCCcccccCCCccccCcccCCChhhchhhhHHHHHHHHHHHHhhh-hcCCCCCceeEEeccCchhhHhhhhhCCCe
Q 006905 414 GELAKWPQRLNAVPPRISKGTVKGITPEIFQQNSELWKKRLSYYKTMNN-QLGQSGRYRNILDMNAHLGGFAAALIDFPV 492 (626)
Q Consensus 414 ~~~~~wp~rl~~~p~~~~~~~~~~~~~~~f~~d~~~w~~~v~~y~~~~~-~~~~~~~~r~vlD~g~g~G~faa~l~~~~v 492 (626)
+++++||+||+++|+||.++++.|+++|.|.+|+++|+++|++|++++. .+++ ++||||||||||+|||||||.+++|
T Consensus 310 ~~~~~WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~-~~iRNVMDMnAg~GGFAAAL~~~~V 388 (506)
T PF03141_consen 310 GWLPKWPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLAIKW-GRIRNVMDMNAGYGGFAAALIDDPV 388 (506)
T ss_pred cCCCCChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhcccccc-cceeeeeeecccccHHHHHhccCCc
Confidence 9999999999999999999999999999999999999999999999887 5888 9999999999999999999999999
Q ss_pred EEEEeccCccCcccHHHHHHhcccceeccccccCCCCCCccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 493 WVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYPRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 493 ~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~yp~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
|||||||+..+ |||++||||||||+||||||+|+|||||||||||+++||.+.+||++++||+||||||||||++||||
T Consensus 389 WVMNVVP~~~~-ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 389 WVMNVVPVSGP-NTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred eEEEecccCCC-CcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence 99999999776 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhCCCeeEEeecCCCCCCcceEEEEEe
Q 006905 573 DVDELVKVKRIIDALKWQSQIVDHEDGPLEREKLLFAVK 611 (626)
Q Consensus 573 ~~~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K 611 (626)
+.+++.+|++|+++|||+++++|+|+|++++||||||||
T Consensus 468 ~~~vl~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 468 TVDVLEKVKKIAKSLRWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred cHHHHHHHHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence 999999999999999999999999999999999999998
|
; GO: 0008168 methyltransferase activity |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-28 Score=265.08 Aligned_cols=156 Identities=19% Similarity=0.317 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHhhhh----cCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceeccccc
Q 006905 449 LWKKRLSYYKTMNNQ----LGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCE 524 (626)
Q Consensus 449 ~w~~~v~~y~~~~~~----~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e 524 (626)
.+.+.+.+|...+.. +..++.+|++||+|||+|+|||+|.+++|.+|+++|.|.+++++++|+|||+..++.....
T Consensus 93 ~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s 172 (506)
T PF03141_consen 93 MFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGS 172 (506)
T ss_pred cccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhcc
Confidence 344455555543332 2344899999999999999999999999999999999999999999999999766655445
Q ss_pred cCCCCC-CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC----------hHHHHHHHHHHHhCCCeeEE
Q 006905 525 AMSTYP-RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDD----------VDELVKVKRIIDALKWQSQI 593 (626)
Q Consensus 525 ~~~~yp-~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~----------~~~~~~~~~~~~~l~w~~~~ 593 (626)
...+|| ++||||||+.....+...- ..+|+|+|||||||||||++.+ .+.+.+|++++++|||+...
T Consensus 173 ~rLPfp~~~fDmvHcsrc~i~W~~~~--g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va 250 (506)
T PF03141_consen 173 QRLPFPSNAFDMVHCSRCLIPWHPND--GFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVA 250 (506)
T ss_pred ccccCCccchhhhhcccccccchhcc--cceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHhe
Confidence 667788 9999999944443333221 2389999999999999999843 46799999999999999876
Q ss_pred eecCCCCCCcceEEEEEeccc
Q 006905 594 VDHEDGPLEREKLLFAVKLYW 614 (626)
Q Consensus 594 ~~~e~~~~~~e~~l~~~K~~w 614 (626)
. +..+.|+||+.=
T Consensus 251 ~--------~~~~aIwqKp~~ 263 (506)
T PF03141_consen 251 E--------KGDTAIWQKPTN 263 (506)
T ss_pred e--------eCCEEEEeccCC
Confidence 4 344999999763
|
; GO: 0008168 methyltransferase activity |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.87 E-value=6e-22 Score=220.54 Aligned_cols=327 Identities=14% Similarity=0.170 Sum_probs=176.3
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccc--cCCCCCCC
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAE--RLPYPSRA 275 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~--~Lpf~d~s 275 (626)
.+.+.+... ...+|||||||+|.++..|++. .++++|+++.++..+.. .......+.+...|.. .+|+++++
T Consensus 28 ~il~~l~~~--~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~--~~~~~~~i~~~~~d~~~~~~~~~~~~ 103 (475)
T PLN02336 28 EILSLLPPY--EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES--INGHYKNVKFMCADVTSPDLNISDGS 103 (475)
T ss_pred HHHhhcCcc--CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH--HhccCCceEEEEecccccccCCCCCC
Confidence 344444332 2458999999999999999986 67888887755432211 1111224556666753 57788899
Q ss_pred eeEEEeccccccccccH-HHHHHHHHhcccCCeEEEEEeCCCCcccccccccchhhhhHHHHHHHHHHHHhhchhhhccc
Q 006905 276 FDMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILSGPPINWKKHARGWQRTKEDLNKEQTAIENVAKSLCWEKIKEK 354 (626)
Q Consensus 276 FDlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~pp~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v~~~ 354 (626)
||+|+|+.+++|+.++. ..++.++.|+|||||++++.............- .....++. ...+..++..-.+......
T Consensus 104 fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~-~~~~~~~~-~~~~~~~f~~~~~~~~~~~ 181 (475)
T PLN02336 104 VDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRK-NNPTHYRE-PRFYTKVFKECHTRDEDGN 181 (475)
T ss_pred EEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCccccc-CCCCeecC-hHHHHHHHHHheeccCCCC
Confidence 99999999997776543 689999999999999999975322110000000 00000000 1122223333222222111
Q ss_pred -ccEE-EEeccCccccccccccCCCCCCCCCCCCCCchhhhhccccccccccCCccccccCCccccCCcccccCCCcccc
Q 006905 355 -GDIA-IWRKPINHLNCKTNQKLSQNPPFCPVQDPDKAWYTQMGTCLTRLPEVSSDRETAGGELAKWPQRLNAVPPRISK 432 (626)
Q Consensus 355 -~~~a-iw~KP~~~~~c~~~~~~~~~p~~C~~~~~d~~wy~~l~~ci~~~p~~~~~~~~~~~~~~~wp~rl~~~p~~~~~ 432 (626)
..+. ...++++ -|.. |...|..-+..- .+++. + .......+=+|+.-.++.|..
T Consensus 182 ~~~~~~~~~~~~~---~~~~--------------~~~~~~~~~~~~-~~~~~-----~-~~~~~~~~~~~~~y~~~~i~~ 237 (475)
T PLN02336 182 SFELSLVGCKCIG---AYVK--------------NKKNQNQICWLW-QKVSS-----T-NDKGFQRFLDNVQYKSSGILR 237 (475)
T ss_pred EEEEEEEEeechh---hhhh--------------ccCCcceEEEEE-EeecC-----C-cchhHHHHhhhhccccccHHH
Confidence 1111 1111111 1111 111111110000 00000 0 001111111221101111110
Q ss_pred CcccCCChhhchhhhHHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHH
Q 006905 433 GTVKGITPEIFQQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIY 511 (626)
Q Consensus 433 ~~~~~~~~~~f~~d~~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~ 511 (626)
.+.|-.....+...|..-..++..+.. ....+|||+|||.|+++..|++. +. +|+.+|.++.++..+.
T Consensus 238 -------~~~f~g~~~~v~~~v~~te~l~~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvDiS~~~l~~A~ 306 (475)
T PLN02336 238 -------YERVFGEGFVSTGGLETTKEFVDKLDL-KPGQKVLDVGCGIGGGDFYMAENFDV---HVVGIDLSVNMISFAL 306 (475)
T ss_pred -------HHHHhCCCCCCCchHHHHHHHHHhcCC-CCCCEEEEEeccCCHHHHHHHHhcCC---EEEEEECCHHHHHHHH
Confidence 111111111222223222333333322 33568999999999999999875 33 7999999999999987
Q ss_pred Hhcc-----cceec-cccccCCCCC-CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 512 ERGL-----VGTYT-NWCEAMSTYP-RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 512 ~rgl-----i~~~~-~~~e~~~~yp-~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
++.. +.+.+ |+.+ .++| .+||+|+|..++.|..+ .+.+|.|+.|+|||||.+++.|
T Consensus 307 ~~~~~~~~~v~~~~~d~~~--~~~~~~~fD~I~s~~~l~h~~d---~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 307 ERAIGRKCSVEFEVADCTK--KTYPDNSFDVIYSRDTILHIQD---KPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred HHhhcCCCceEEEEcCccc--CCCCCCCEEEEEECCcccccCC---HHHHHHHHHHHcCCCeEEEEEE
Confidence 7532 22222 3222 2355 78999999999988874 5899999999999999999985
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.6e-15 Score=149.21 Aligned_cols=102 Identities=23% Similarity=0.275 Sum_probs=82.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEeccccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLI 286 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~ 286 (626)
++.+|||||||||.++..+++. .|+++|+++.|+..+..+........+.+.++|++.|||+|++||+|.+++.|.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglr 130 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLR 130 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhh
Confidence 4669999999999999999986 688888877655543333222111227788999999999999999999999995
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 287 PWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 287 h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+.. +...+|+|+.|||||||.+++..
T Consensus 131 nv~-d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 131 NVT-DIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred cCC-CHHHHHHHHHHhhcCCeEEEEEE
Confidence 554 57999999999999999998865
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.9e-14 Score=123.05 Aligned_cols=90 Identities=29% Similarity=0.465 Sum_probs=71.7
Q ss_pred EEeCCCCchHHHHHhhC-C--cEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCCCCCCCeeEEEeccccccccc
Q 006905 216 IDTGCGVASWGAYLLSR-N--IITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQ 290 (626)
Q Consensus 216 LDIGCGtG~~a~~La~~-~--V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~ 290 (626)
||+|||+|.++..|+++ . ++++|+ ++.+++.++++.. ...+...+...+|+++++||+|++..+++|+ +
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~-----~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDI-----SEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-E 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES------HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS-S
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeC-----CHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec-c
Confidence 89999999999999998 4 555555 5567777766543 2447788899999999999999999999777 6
Q ss_pred cHHHHHHHHHhcccCCeEEEE
Q 006905 291 FGGIYLIEVDRVLRPGGYWIL 311 (626)
Q Consensus 291 ~~~~~L~Ei~RvLKPGG~lvi 311 (626)
+...+++|+.|+|||||+++|
T Consensus 75 ~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHHHHHcCcCeEEeC
Confidence 679999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.2e-14 Score=144.69 Aligned_cols=101 Identities=26% Similarity=0.345 Sum_probs=73.2
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEeccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLI 286 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~ 286 (626)
+.+|||+|||||.++..++++ .|+++|+++.++..+..+.......++.+.++|++.+||++++||+|+|++.++
T Consensus 48 g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglr 127 (233)
T PF01209_consen 48 GDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLR 127 (233)
T ss_dssp --EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GG
T ss_pred CCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHH
Confidence 559999999999999988875 578888877666655544443323368889999999999999999999999996
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 287 PWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 287 h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
..+ +...+|+|+.|+|||||.+++..
T Consensus 128 n~~-d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 128 NFP-DRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp G-S-SHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhC-CHHHHHHHHHHHcCCCeEEEEee
Confidence 655 46899999999999999999864
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.1e-12 Score=141.46 Aligned_cols=114 Identities=15% Similarity=0.237 Sum_probs=76.5
Q ss_pred CceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHH----HHHHhcccceeccccccC----CCCC-Cccceeeec
Q 006905 469 RYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLG----VIYERGLVGTYTNWCEAM----STYP-RTYDLIHAD 539 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~----~~~~rgli~~~~~~~e~~----~~yp-~t~Dlih~~ 539 (626)
.-..+||+|||.|.|...++...= -.|+++++...+-+. .+.++|+-. +.-.|..+ ..+| ++.|-||.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p-~~~~iGiE~~~~~~~~~~~~~~~~~l~N-~~~~~~~~~~~~~~~~~~sv~~i~i- 423 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNP-DALFIGVEVYLNGVANVLKLAGEQNITN-FLLFPNNLDLILNDLPNNSLDGIYI- 423 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHcCCCe-EEEEcCCHHHHHHhcCcccccEEEE-
Confidence 467799999999999999987631 128888887755333 444556522 22223332 2356 89999987
Q ss_pred cccc-------cCCCCCCHHHHHHHhhhhccCCcEEEE-EcChHHHHHHHHHHHh
Q 006905 540 SVFS-------LYKDRCETEDILLEMDRILRPEGGVIF-RDDVDELVKVKRIIDA 586 (626)
Q Consensus 540 ~~f~-------~~~~~c~~~~~l~E~dRiLRPgG~~i~-~d~~~~~~~~~~~~~~ 586 (626)
.|. |.+.|=--+..|.++.|+|+|||.+.+ ||..+....+.+.+..
T Consensus 424 -~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~ 477 (506)
T PRK01544 424 -LFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQ 477 (506)
T ss_pred -ECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 566 333343335799999999999999888 5777766665555444
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.7e-13 Score=134.25 Aligned_cols=155 Identities=23% Similarity=0.284 Sum_probs=109.8
Q ss_pred ccCCCCchh-hHHHHhhhhhhccCCceecCCCCCCCCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--
Q 006905 156 YANVPHKEL-TVEKAVQNWIRYEGDRFRFPGGGTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-- 232 (626)
Q Consensus 156 ~~N~~~~~L-~~~k~~q~W~~~~ge~~~Fp~ggt~F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-- 232 (626)
..|+++..+ ...+..+.||+..++.-.- -.+......|+......- ..-.+.+|||||||.|.++..|+..
T Consensus 9 ~~~id~~e~~~F~~la~~wwd~~g~f~~L----H~~N~~rl~~i~~~~~~~--~~l~g~~vLDvGCGgG~Lse~mAr~Ga 82 (243)
T COG2227 9 TQNVDYKELDKFEALASRWWDPEGEFKPL----HKINPLRLDYIREVARLR--FDLPGLRVLDVGCGGGILSEPLARLGA 82 (243)
T ss_pred cccCCHHHHHHHHHHHhhhcCCCCceeee----eeeccchhhhhhhhhhcc--cCCCCCeEEEecCCccHhhHHHHHCCC
Confidence 345555555 3566678899877754333 123334445544333210 0123668999999999999999998
Q ss_pred CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEE
Q 006905 233 NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 233 ~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
.|+++|+++..+..++ ..|.+.++.+.+....++++....++||+|+|..+++|.++ +..+++.+.+++||||.++++
T Consensus 83 ~VtgiD~se~~I~~Ak-~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~d-p~~~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 83 SVTGIDASEKPIEVAK-LHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVPD-PESFLRACAKLVKPGGILFLS 160 (243)
T ss_pred eeEEecCChHHHHHHH-HhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccCC-HHHHHHHHHHHcCCCcEEEEe
Confidence 5777777665554433 34556677777777777787776689999999999999886 588999999999999999999
Q ss_pred eCCCCc
Q 006905 313 GPPINW 318 (626)
Q Consensus 313 ~pp~~w 318 (626)
....++
T Consensus 161 Tinrt~ 166 (243)
T COG2227 161 TINRTL 166 (243)
T ss_pred ccccCH
Confidence 875443
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-12 Score=134.42 Aligned_cols=102 Identities=19% Similarity=0.136 Sum_probs=80.3
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHH--Hc-CCCeEEEEcccccCCCCCCCeeEEEecc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFAL--ER-GVPALIGVLAAERLPYPSRAFDMAHCSR 283 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~--er-g~~~~~~v~d~~~Lpf~d~sFDlV~~~~ 283 (626)
+.+|||+|||+|.++..|+++ .++++|+++.++..+..+... .. ...+.+..+|...+|+++++||+|+++.
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~ 153 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGY 153 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEec
Confidence 458999999999999888764 588888877666544332211 11 1246778888999999999999999999
Q ss_pred ccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 284 CLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 284 ~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+++++. ++..++.|+.|+|||||+|++...
T Consensus 154 ~l~~~~-d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 154 GLRNVV-DRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred ccccCC-CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 996665 578999999999999999999854
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.3e-12 Score=131.86 Aligned_cols=98 Identities=23% Similarity=0.397 Sum_probs=81.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEeccccccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPW 288 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~ 288 (626)
...+|||+|||+|.++..|++. .++++|+++ .+++.++++.....+..+|.+.+|+++++||+|+++.++ ||
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~-----~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l-~~ 115 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSP-----PMLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAV-QW 115 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCH-----HHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchh-hh
Confidence 3568999999999999988876 566776654 566667666544456778888999999999999999988 77
Q ss_pred cccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 289 NQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 289 ~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
..++..+|.++.|+|||||.++++.+
T Consensus 116 ~~d~~~~l~~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 116 CGNLSTALRELYRVVRPGGVVAFTTL 141 (251)
T ss_pred cCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence 77789999999999999999999865
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.2e-12 Score=135.79 Aligned_cols=103 Identities=17% Similarity=0.137 Sum_probs=80.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcC--CCeEEEEcccccCCCCCCCeeEEEeccccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERG--VPALIGVLAAERLPYPSRAFDMAHCSRCLI 286 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg--~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~ 286 (626)
.+.+|||||||+|.++..|++. .|+++|+++.++..++.. +...+ ..+.+...+++.+++++++||+|+|..+++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~-~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLH-ADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 3568999999999999999886 577777766554433322 11112 246677778888888888999999999998
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeCC
Q 006905 287 PWNQFGGIYLIEVDRVLRPGGYWILSGPP 315 (626)
Q Consensus 287 h~~~~~~~~L~Ei~RvLKPGG~lvis~pp 315 (626)
|+.+ +..++.++.|+|||||.++++...
T Consensus 210 Hv~d-~~~~L~~l~r~LkPGG~liist~n 237 (322)
T PLN02396 210 HVAN-PAEFCKSLSALTIPNGATVLSTIN 237 (322)
T ss_pred hcCC-HHHHHHHHHHHcCCCcEEEEEECC
Confidence 8775 689999999999999999998753
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.4e-12 Score=133.15 Aligned_cols=118 Identities=16% Similarity=0.233 Sum_probs=88.1
Q ss_pred CCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcC---CCeEEEE
Q 006905 190 FPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERG---VPALIGV 263 (626)
Q Consensus 190 F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg---~~~~~~v 263 (626)
+..+..+..+.+.+.+.+.+ +.+|||||||+|..+..|++. .++++|+++. +++.++++. ..+.+..
T Consensus 33 ~~~gg~~~~~~~l~~l~l~~--~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~-----~~~~a~~~~~~~~~i~~~~ 105 (263)
T PTZ00098 33 ISSGGIEATTKILSDIELNE--NSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEK-----MVNIAKLRNSDKNKIEFEA 105 (263)
T ss_pred CCCCchHHHHHHHHhCCCCC--CCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHH-----HHHHHHHHcCcCCceEEEE
Confidence 33444445556666665444 458999999999999888764 5777777654 444444432 2466777
Q ss_pred cccccCCCCCCCeeEEEeccccccccc-cHHHHHHHHHhcccCCeEEEEEeC
Q 006905 264 LAAERLPYPSRAFDMAHCSRCLIPWNQ-FGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 264 ~d~~~Lpf~d~sFDlV~~~~~l~h~~~-~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.|...+|+++++||+|++..+++|+.. +...+|+++.|+|||||+|+++.+
T Consensus 106 ~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 106 NDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred CCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 788888999999999999988878763 568999999999999999999864
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.9e-12 Score=136.36 Aligned_cols=102 Identities=23% Similarity=0.395 Sum_probs=82.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCCCCCCCeeEEEecccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lpf~d~sFDlV~~~~~l 285 (626)
.+.+|||||||+|.++..|+++ .|+++|+++.++..+. +.+.+.+. .+.+.++|...+|+++++||+|++..++
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~-~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARAN-ALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG 196 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHH-HHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence 4568999999999999999875 6788888775544332 23333444 4678888998999999999999999999
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 286 IPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 286 ~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+|+.+ ...++.++.|+|||||.|++...
T Consensus 197 ~h~~d-~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 197 EHMPD-KRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred hccCC-HHHHHHHHHHHcCCCcEEEEEEe
Confidence 88765 58999999999999999999753
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-12 Score=112.01 Aligned_cols=90 Identities=26% Similarity=0.376 Sum_probs=71.8
Q ss_pred EeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhcccc---eeccccccCCCCC-CccceeeeccccccCCCC
Q 006905 474 LDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERGLVG---TYTNWCEAMSTYP-RTYDLIHADSVFSLYKDR 548 (626)
Q Consensus 474 lD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rgli~---~~~~~~e~~~~yp-~t~Dlih~~~~f~~~~~~ 548 (626)
||+|||.|.++..|+++ +. +|+.+|.++.+++.+.++.... ..+.=.+.+ ++| ++||+|++..+|.+.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~---~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l-~~~~~sfD~v~~~~~~~~~--- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGA---SVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDL-PFPDNSFDVVFSNSVLHHL--- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTC---EEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSS-SS-TT-EEEEEEESHGGGS---
T ss_pred CEecCcCCHHHHHHHhccCC---EEEEEeCCHHHHHHHHhcccccCchheeehHHhC-ccccccccccccccceeec---
Confidence 89999999999999999 55 8999999999999999988633 333222333 344 999999999999998
Q ss_pred CCHHHHHHHhhhhccCCcEEEE
Q 006905 549 CETEDILLEMDRILRPEGGVIF 570 (626)
Q Consensus 549 c~~~~~l~E~dRiLRPgG~~i~ 570 (626)
.+...+|.|+.|+|||||+++|
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEeC
Confidence 3668999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.8e-12 Score=128.46 Aligned_cols=94 Identities=26% Similarity=0.300 Sum_probs=75.2
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIP 287 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h 287 (626)
+.+|||||||+|.++..|+++ .++++|+++ .+++.|+++++ .+..+|.+.++ ++++||+|+|+.+++|
T Consensus 30 ~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~-----~~~~~a~~~~~--~~~~~d~~~~~-~~~~fD~v~~~~~l~~ 101 (255)
T PRK14103 30 ARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSP-----EMVAAARERGV--DARTGDVRDWK-PKPDTDVVVSNAALQW 101 (255)
T ss_pred CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCH-----HHHHHHHhcCC--cEEEcChhhCC-CCCCceEEEEehhhhh
Confidence 468999999999999999875 577777755 56666666654 46667777764 5679999999999954
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 288 WNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 288 ~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
..++..+++++.++|||||+|++..+
T Consensus 102 -~~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 102 -VPEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred -CCCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 45678999999999999999999754
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.29 E-value=3e-11 Score=121.73 Aligned_cols=112 Identities=23% Similarity=0.306 Sum_probs=82.6
Q ss_pred HHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCCCC
Q 006905 199 DDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLPYP 272 (626)
Q Consensus 199 ~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lpf~ 272 (626)
+.+.+.+.... +.+|||+|||+|.++..+++. .++++|+++.++..+..+.. ..+. .+.+...|...++++
T Consensus 35 ~~~l~~l~~~~--~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~v~~~~~d~~~~~~~ 111 (231)
T TIGR02752 35 KDTMKRMNVQA--GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVK-DAGLHNVELVHGNAMELPFD 111 (231)
T ss_pred HHHHHhcCCCC--CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-hcCCCceEEEEechhcCCCC
Confidence 34444444333 458999999999999888764 57888887755543333322 2233 356677788888888
Q ss_pred CCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 273 SRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 273 d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+++||+|++..++++. .+...++.++.|+|+|||++++..+
T Consensus 112 ~~~fD~V~~~~~l~~~-~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 112 DNSFDYVTIGFGLRNV-PDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred CCCccEEEEecccccC-CCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 8999999999988544 4568999999999999999998754
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.4e-11 Score=120.45 Aligned_cols=99 Identities=16% Similarity=0.292 Sum_probs=74.4
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEcccccCCCCCCCeeEEEeccccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAERLPYPSRAFDMAHCSRCLIPW 288 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~ 288 (626)
..+|||+|||+|.++..|+++ .|+++|+++.++..+... +...++. +.+.+.|...++++ ++||+|+|+.++++.
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~-~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~ 108 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERI-KAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLMFL 108 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-HHHcCCCcceEEecChhhCCcC-CCcCEEEEecchhhC
Confidence 358999999999999999987 578888877655544332 3344443 55666677666664 579999999998554
Q ss_pred cc-cHHHHHHHHHhcccCCeEEEEE
Q 006905 289 NQ-FGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 289 ~~-~~~~~L~Ei~RvLKPGG~lvis 312 (626)
.. +...++.++.|+|||||++++.
T Consensus 109 ~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 109 EAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 43 3478999999999999997654
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.4e-11 Score=107.99 Aligned_cols=101 Identities=21% Similarity=0.247 Sum_probs=75.0
Q ss_pred CCEEEEeCCCCchHHHHHhh--C--CcEEEeCCccchHHHHHHHHHH-cCCCeEEEEccc-ccCCCCCCCeeEEEecc-c
Q 006905 212 IRTAIDTGCGVASWGAYLLS--R--NIITMSFAPRDTHEAQVQFALE-RGVPALIGVLAA-ERLPYPSRAFDMAHCSR-C 284 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~--~--~V~avdis~~dls~a~i~~A~e-rg~~~~~~v~d~-~~Lpf~d~sFDlV~~~~-~ 284 (626)
+.+|||||||+|.++..+++ . .++++|+++.++..++.+.... ....+.+...|. ..... .+.||+|++.. +
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGFT 80 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSGS
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCCc
Confidence 45899999999999999998 3 6888999886666555444222 234677887777 33333 34699999998 5
Q ss_pred ccccc--ccHHHHHHHHHhcccCCeEEEEEe
Q 006905 285 LIPWN--QFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 285 l~h~~--~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
++++. ++...++.++.+.|+|||+|++..
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 54343 334789999999999999999974
|
... |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.1e-11 Score=118.53 Aligned_cols=99 Identities=14% Similarity=0.257 Sum_probs=75.1
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWN 289 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~ 289 (626)
..+|||+|||+|.++.+|+++ .|+++|+++.++..+. +.+...++++...+.+....+++ ++||+|+++.+++++.
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~-~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~~ 108 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVL-DMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMFLQ 108 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHH-HHHHHhCCCceeEeccchhcccc-CCCCEEEEecccccCC
Confidence 348999999999999999987 5888888775555433 23445566666666666555654 5799999999986665
Q ss_pred c-cHHHHHHHHHhcccCCeEEEEE
Q 006905 290 Q-FGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 290 ~-~~~~~L~Ei~RvLKPGG~lvis 312 (626)
. +...++.++.|+|||||++++.
T Consensus 109 ~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 109 AGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3 3378999999999999996664
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.8e-11 Score=124.42 Aligned_cols=113 Identities=20% Similarity=0.118 Sum_probs=82.5
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCC-CCCC
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLP-YPSR 274 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lp-f~d~ 274 (626)
.+.+++........+|||+|||+|.++..|+++ .|+++|+++.++..++. .+.+.+. .+.+..++...++ ++++
T Consensus 33 ~~~~~l~~l~~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~-~~~~~g~~~~v~~~~~d~~~l~~~~~~ 111 (255)
T PRK11036 33 DLDRLLAELPPRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQ-AAEAKGVSDNMQFIHCAAQDIAQHLET 111 (255)
T ss_pred HHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHH-HHHhcCCccceEEEEcCHHHHhhhcCC
Confidence 444555432334568999999999999999987 57788887755554332 2333443 3566667776664 6678
Q ss_pred CeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 275 AFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 275 sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+||+|+|..+++|+ .++..++.++.|+|||||++++...
T Consensus 112 ~fD~V~~~~vl~~~-~~~~~~l~~~~~~LkpgG~l~i~~~ 150 (255)
T PRK11036 112 PVDLILFHAVLEWV-ADPKSVLQTLWSVLRPGGALSLMFY 150 (255)
T ss_pred CCCEEEehhHHHhh-CCHHHHHHHHHHHcCCCeEEEEEEE
Confidence 99999999998555 4568999999999999999998753
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.7e-11 Score=121.81 Aligned_cols=105 Identities=20% Similarity=0.185 Sum_probs=84.7
Q ss_pred CCCCCCEEEEeCCCCchHHHHHhhC----------CcEEEeCCccchHHHHHHHHHHcCC----CeEEEEcccccCCCCC
Q 006905 208 NDGSIRTAIDTGCGVASWGAYLLSR----------NIITMSFAPRDTHEAQVQFALERGV----PALIGVLAAERLPYPS 273 (626)
Q Consensus 208 ~~~~~~~VLDIGCGtG~~a~~La~~----------~V~avdis~~dls~a~i~~A~erg~----~~~~~v~d~~~Lpf~d 273 (626)
.++.+.++||++||||.++..+.+. +|+++|+++.++..+.. .+.++++ ...+..+|++.|||++
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkq-Ra~~~~l~~~~~~~w~~~dAE~LpFdd 175 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQ-RAKKRPLKASSRVEWVEGDAEDLPFDD 175 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHH-HHhhcCCCcCCceEEEeCCcccCCCCC
Confidence 4455679999999999888887764 68999998877765443 3434443 2667888999999999
Q ss_pred CCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 274 RAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 274 ~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++||+.+.++.+..+.+ ..+.|+|++|||||||.|.+-..
T Consensus 176 ~s~D~yTiafGIRN~th-~~k~l~EAYRVLKpGGrf~cLeF 215 (296)
T KOG1540|consen 176 DSFDAYTIAFGIRNVTH-IQKALREAYRVLKPGGRFSCLEF 215 (296)
T ss_pred CcceeEEEecceecCCC-HHHHHHHHHHhcCCCcEEEEEEc
Confidence 99999999999866665 69999999999999999998654
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=5e-11 Score=120.75 Aligned_cols=87 Identities=18% Similarity=0.198 Sum_probs=69.9
Q ss_pred CCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEeccccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPW 288 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~ 288 (626)
..+|||||||+|.++..|++. .++++|+++ .+++.|+++. .+.+++++.+|+++++||+|+++.+++|+
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~-----~Ml~~a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~~l~~~ 123 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAE-----NMLKMNLVAD---DKVVGSFEALPFRDKSFDVVMSSFALHAS 123 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCH-----HHHHHHHhcc---ceEEechhhCCCCCCCEEEEEecChhhcc
Confidence 458999999999999999886 567777655 4555565543 24567888999999999999999999655
Q ss_pred cccHHHHHHHHHhcccCCe
Q 006905 289 NQFGGIYLIEVDRVLRPGG 307 (626)
Q Consensus 289 ~~~~~~~L~Ei~RvLKPGG 307 (626)
.++..+++|+.|+|||.+
T Consensus 124 -~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 124 -DNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred -CCHHHHHHHHHHHhcCce
Confidence 457999999999999953
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.1e-11 Score=121.20 Aligned_cols=102 Identities=16% Similarity=0.089 Sum_probs=76.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhC------CcEEEeCCccchHHHHHHHHHHc-CCCeEEEEcccccCCCCCCCeeEEEecc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR------NIITMSFAPRDTHEAQVQFALER-GVPALIGVLAAERLPYPSRAFDMAHCSR 283 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~------~V~avdis~~dls~a~i~~A~er-g~~~~~~v~d~~~Lpf~d~sFDlV~~~~ 283 (626)
+..+|||||||+|.++..++++ .++++|+++.++..+..+..... ...+.+..+|...++++ .+|+|+++.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~ 130 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF 130 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec
Confidence 3558999999999999888763 48888887765554443322111 23467778888888765 489999999
Q ss_pred cccccccc-HHHHHHHHHhcccCCeEEEEEeC
Q 006905 284 CLIPWNQF-GGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 284 ~l~h~~~~-~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+++|+... ...++.++.|+|||||.|+++.+
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 99666532 37899999999999999999854
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.1e-11 Score=114.66 Aligned_cols=108 Identities=26% Similarity=0.488 Sum_probs=78.2
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCC
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSR 274 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~ 274 (626)
+.+.+.++.+. .....+|||||||+|.++..|++. .++++|+++.++. . ........+....+.+++
T Consensus 9 ~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~ 77 (161)
T PF13489_consen 9 YADLLERLLPR-LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIE-----K-----RNVVFDNFDAQDPPFPDG 77 (161)
T ss_dssp HHHHHHHHHTC-TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHH-----H-----TTSEEEEEECHTHHCHSS
T ss_pred HHHHHHHHhcc-cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHh-----h-----hhhhhhhhhhhhhhcccc
Confidence 34445555542 233569999999999999999887 5667777553332 2 222333333445556788
Q ss_pred CeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 006905 275 AFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPPI 316 (626)
Q Consensus 275 sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~pp~ 316 (626)
+||+|+|+.+++|.. ++..+|.++.++|||||+++++.+..
T Consensus 78 ~fD~i~~~~~l~~~~-d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 78 SFDLIICNDVLEHLP-DPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp SEEEEEEESSGGGSS-HHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred chhhHhhHHHHhhcc-cHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 999999999997766 57999999999999999999997643
|
... |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-10 Score=124.43 Aligned_cols=101 Identities=23% Similarity=0.205 Sum_probs=77.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHH-HcCCCeEEEEcccccCCCCCCCeeEEEeccccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFAL-ERGVPALIGVLAAERLPYPSRAFDMAHCSRCLI 286 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~-erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~ 286 (626)
.+++|||||||+|.++..|++. .|+++|.++.++......... ....++.+..++.+.+|+ +++||+|+|..+++
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~ 200 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLY 200 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhh
Confidence 3569999999999999999886 378888776544322111111 112356777788888998 78899999999997
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 287 PWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 287 h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
|.. ++..+|+++.++|+|||.|+++.
T Consensus 201 H~~-dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 201 HRR-SPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred ccC-CHHHHHHHHHHhcCCCcEEEEEE
Confidence 765 46899999999999999999974
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.5e-11 Score=122.05 Aligned_cols=96 Identities=23% Similarity=0.309 Sum_probs=76.2
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIP 287 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h 287 (626)
+.+|||||||+|.++..|++. .++++|+++ .+++.++++...+.+...|...++ ++++||+|+++.++ |
T Consensus 32 ~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~-----~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l-~ 104 (258)
T PRK01683 32 PRYVVDLGCGPGNSTELLVERWPAARITGIDSSP-----AMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANASL-Q 104 (258)
T ss_pred CCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCH-----HHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccCh-h
Confidence 568999999999999998874 577777755 456666665545667777776654 45689999999998 5
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 288 WNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 288 ~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
|..+...+++++.++|||||.|++..+
T Consensus 105 ~~~d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 105 WLPDHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEECC
Confidence 555678999999999999999999754
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.7e-11 Score=118.18 Aligned_cols=97 Identities=27% Similarity=0.385 Sum_probs=77.1
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCCCCCCCeeEEEeccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLPYPSRAFDMAHCSRCLI 286 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~ 286 (626)
..+|||+|||+|.++..|++. .++++|+++ .+++.+.++.. .+.+...|...+++++++||+|+++.++
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~-----~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l- 108 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISA-----GMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLAL- 108 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChH-----HHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhh-
Confidence 468999999999999999876 357777754 44445544432 3566777888888888999999999998
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 287 PWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 287 h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
|+..+...++.++.++|+|||.+++..+
T Consensus 109 ~~~~~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 109 QWCDDLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred hhccCHHHHHHHHHHHcCCCcEEEEEeC
Confidence 5555578999999999999999999865
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.21 E-value=7e-11 Score=111.74 Aligned_cols=100 Identities=26% Similarity=0.300 Sum_probs=77.6
Q ss_pred CCEEEEeCCCCchHHHHHhh-----CCcEEEeCCccchHHHHHHHHHHcCCC-eEEEEcccccCC--CCCCCeeEEEecc
Q 006905 212 IRTAIDTGCGVASWGAYLLS-----RNIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAERLP--YPSRAFDMAHCSR 283 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~-----~~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~~Lp--f~d~sFDlV~~~~ 283 (626)
..+|||+|||+|.++..|++ ..++++|+++.++..+.. .+.+.+.+ +.+.+.|...++ ++ +.||+|++..
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~-~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~ 81 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKK-RAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG 81 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHH-HHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhc-ccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence 45899999999999999993 258888887755543332 33344554 888888988777 66 7899999999
Q ss_pred ccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 284 CLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 284 ~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++++ ..+...+++++.++|++||.+++..+
T Consensus 82 ~l~~-~~~~~~~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 82 VLHH-FPDPEKVLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp TGGG-TSHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred chhh-ccCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 8844 44568999999999999999999864
|
... |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.1e-11 Score=119.66 Aligned_cols=180 Identities=19% Similarity=0.238 Sum_probs=119.3
Q ss_pred CCCCCCCCCcHHHHHHHHHHhhccC-----C-CCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHc
Q 006905 184 PGGGTMFPNGADAYIDDIGKLINLN-----D-GSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALER 255 (626)
Q Consensus 184 p~ggt~F~~ga~~yi~~L~~ll~l~-----~-~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~er 255 (626)
-|.|+||--..+.+ .+++... + ....++||||+|.|..+..|+.. .|.++++++ .|+....++
T Consensus 65 LgRG~MFvfS~~Q~----~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~-----~Mr~rL~~k 135 (265)
T PF05219_consen 65 LGRGSMFVFSEEQF----RKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASP-----PMRWRLSKK 135 (265)
T ss_pred hcCCcEEEecHHHH----HHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCH-----HHHHHHHhC
Confidence 35566664444433 3444322 1 23568999999999999999886 788888865 455666778
Q ss_pred CCCeEEEEcccccCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe-CCCCcccccc--cccchhhhh
Q 006905 256 GVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG-PPINWKKHAR--GWQRTKEDL 332 (626)
Q Consensus 256 g~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~-pp~~w~~~~~--~w~~~~e~l 332 (626)
|..+ .+...+.-.+..||+|.|.++| .-.+.|..+|+++++.|+|+|.++++. -|.....+.. .+.++.+.+
T Consensus 136 g~~v----l~~~~w~~~~~~fDvIscLNvL-DRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l 210 (265)
T PF05219_consen 136 GFTV----LDIDDWQQTDFKFDVISCLNVL-DRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELL 210 (265)
T ss_pred CCeE----EehhhhhccCCceEEEeehhhh-hccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhc
Confidence 8543 2333344345689999999988 666778999999999999999999974 4444333333 255555555
Q ss_pred HHHHHHHHHHHHhhchhhhcccccEEEEeccCccccccccccCCCCCCCCCCCCCCchhh
Q 006905 333 NKEQTAIENVAKSLCWEKIKEKGDIAIWRKPINHLNCKTNQKLSQNPPFCPVQDPDKAWY 392 (626)
Q Consensus 333 ~~~~~~ie~l~~~l~w~~v~~~~~~aiw~KP~~~~~c~~~~~~~~~p~~C~~~~~d~~wy 392 (626)
.-....+|+.+.++- .++++..+.+ .-+. +-|++|++|...++|+
T Consensus 211 ~~~g~~~E~~v~~l~--~v~~p~GF~v--------~~~t-----r~PYLcEGD~~~~~Y~ 255 (265)
T PF05219_consen 211 PVKGATFEEQVSSLV--NVFEPAGFEV--------ERWT-----RLPYLCEGDLYQSYYV 255 (265)
T ss_pred CCCCCcHHHHHHHHH--HHHHhcCCEE--------EEEe-----ccCccccCcccCceEE
Confidence 444455666666665 4556655542 2222 3499999887766554
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=4e-10 Score=112.75 Aligned_cols=116 Identities=24% Similarity=0.327 Sum_probs=85.0
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccC
Q 006905 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERL 269 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~L 269 (626)
..+.+.+.+.+.... +.+|||+|||+|.++..+++. .++++|+++..+..+..+ .......+.+...|...+
T Consensus 5 ~~~~~~~~~~~~~~~--~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~-~~~~~~~~~~~~~d~~~~ 81 (241)
T PRK08317 5 RRYRARTFELLAVQP--GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER-AAGLGPNVEFVRGDADGL 81 (241)
T ss_pred HHHHHHHHHHcCCCC--CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH-hhCCCCceEEEecccccC
Confidence 345555666655443 458999999999999888764 578888866433322221 111233466777788888
Q ss_pred CCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 270 PYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 270 pf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++++++||+|++..+++|+.+ +..+++++.++|||||++++..+
T Consensus 82 ~~~~~~~D~v~~~~~~~~~~~-~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 82 PFPDGSFDAVRSDRVLQHLED-PARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred CCCCCCceEEEEechhhccCC-HHHHHHHHHHHhcCCcEEEEEec
Confidence 888899999999999966654 68999999999999999999865
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.1e-11 Score=120.59 Aligned_cols=116 Identities=17% Similarity=0.128 Sum_probs=82.2
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhh------CCcEEEeCCccchHHHHHHHHHHcCC--CeEEEEccc
Q 006905 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLS------RNIITMSFAPRDTHEAQVQFALERGV--PALIGVLAA 266 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~------~~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~ 266 (626)
+.....+..++......+.+|||||||+|..+..|++ ..++++|+++.++..+..+... .+. .+.+..++.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~-~~~~~~v~~~~~d~ 118 (247)
T PRK15451 40 SNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDA-YKAPTPVDVIEGDI 118 (247)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh-cCCCCCeEEEeCCh
Confidence 3333344444332223456899999999999887765 2688888888666655544432 222 466777787
Q ss_pred ccCCCCCCCeeEEEeccccccccccH-HHHHHHHHhcccCCeEEEEEe
Q 006905 267 ERLPYPSRAFDMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 267 ~~Lpf~d~sFDlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~ 313 (626)
..+|++ .+|+|+++.++++...+. ..+++++.|+|||||.|+++.
T Consensus 119 ~~~~~~--~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 119 RDIAIE--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hhCCCC--CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 777764 499999999996665432 689999999999999999985
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.9e-11 Score=122.33 Aligned_cols=92 Identities=22% Similarity=0.377 Sum_probs=73.0
Q ss_pred CCEEEEeCCCCchHHHHHhhC-------CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEeccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-------NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRC 284 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-------~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~ 284 (626)
..+|||+|||+|.++..|++. .++++|+ ++.+++.|.++...+.+.++|...+|+++++||+|++..+
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~-----s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~ 160 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDI-----SKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA 160 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECC-----CHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC
Confidence 457999999999999988764 2466666 4466677777666677888899999999999999998654
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 006905 285 LIPWNQFGGIYLIEVDRVLRPGGYWILSGPPI 316 (626)
Q Consensus 285 l~h~~~~~~~~L~Ei~RvLKPGG~lvis~pp~ 316 (626)
. ..+.|+.|+|||||+|++..+..
T Consensus 161 ~--------~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 161 P--------CKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred C--------CCHHHHHhhccCCCEEEEEeCCC
Confidence 1 24689999999999999987643
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.1e-11 Score=115.89 Aligned_cols=140 Identities=25% Similarity=0.339 Sum_probs=100.3
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCC-CCCCCee
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLP-YPSRAFD 277 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lp-f~d~sFD 277 (626)
.|.++++ + +.+|||+|||.|.+..+|.+. ++.+.++ +++.+.+..+.++|+++.-..++ +.|+ |++++||
T Consensus 6 ~I~~~I~--p--gsrVLDLGCGdG~LL~~L~~~k~v~g~Gv---Eid~~~v~~cv~rGv~Viq~Dld-~gL~~f~d~sFD 77 (193)
T PF07021_consen 6 IIAEWIE--P--GSRVLDLGCGDGELLAYLKDEKQVDGYGV---EIDPDNVAACVARGVSVIQGDLD-EGLADFPDQSFD 77 (193)
T ss_pred HHHHHcC--C--CCEEEecCCCchHHHHHHHHhcCCeEEEE---ecCHHHHHHHHHcCCCEEECCHH-HhHhhCCCCCcc
Confidence 3555542 3 458999999999999999984 6766666 56677888899999875544333 3354 9999999
Q ss_pred EEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCC-Cccccc---------------ccccchhhhhHHHHHHHHH
Q 006905 278 MAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPPI-NWKKHA---------------RGWQRTKEDLNKEQTAIEN 341 (626)
Q Consensus 278 lV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~pp~-~w~~~~---------------~~w~~~~e~l~~~~~~ie~ 341 (626)
.|+++.++.+... +..+|.|+.|+ |...+++.|.. +|..+. ..|..|+.-..-....+++
T Consensus 78 ~VIlsqtLQ~~~~-P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~ 153 (193)
T PF07021_consen 78 YVILSQTLQAVRR-PDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFED 153 (193)
T ss_pred EEehHhHHHhHhH-HHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHH
Confidence 9999999966654 78999999777 55677776654 354331 1477777766666677777
Q ss_pred HHHhhchhhh
Q 006905 342 VAKSLCWEKI 351 (626)
Q Consensus 342 l~~~l~w~~v 351 (626)
+.+..+++.+
T Consensus 154 lc~~~~i~I~ 163 (193)
T PF07021_consen 154 LCRELGIRIE 163 (193)
T ss_pred HHHHCCCEEE
Confidence 7777665433
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.8e-10 Score=128.75 Aligned_cols=102 Identities=18% Similarity=0.330 Sum_probs=78.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIP 287 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h 287 (626)
++.+|||||||+|.++..|++. .++++|+++.++..+..+ +......+.+.+.|...+++++++||+|+|..+++|
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~-~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h 344 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALER-AIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILH 344 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHH-hhcCCCceEEEEcCcccCCCCCCCEEEEEECCcccc
Confidence 3568999999999998888875 578888866444332221 112233467778888888888889999999999977
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 288 WNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 288 ~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+.+ +..+|.++.|+|||||.+++..+
T Consensus 345 ~~d-~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 345 IQD-KPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred cCC-HHHHHHHHHHHcCCCeEEEEEEe
Confidence 764 68999999999999999999864
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-11 Score=108.35 Aligned_cols=93 Identities=24% Similarity=0.288 Sum_probs=56.0
Q ss_pred EEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCC-C-CCCCeeEEEecccccccc
Q 006905 216 IDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLP-Y-PSRAFDMAHCSRCLIPWN 289 (626)
Q Consensus 216 LDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lp-f-~d~sFDlV~~~~~l~h~~ 289 (626)
||||||+|.++..++++ .++++|+++.++..+..++................... . ..++||+|+++.+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 79999999998888775 78999999988754444444333333333333322221 1 23599999999999777
Q ss_pred ccHHHHHHHHHhcccCCeEE
Q 006905 290 QFGGIYLIEVDRVLRPGGYW 309 (626)
Q Consensus 290 ~~~~~~L~Ei~RvLKPGG~l 309 (626)
++...+++.+.++|||||.|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 66789999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.4e-11 Score=106.00 Aligned_cols=92 Identities=29% Similarity=0.470 Sum_probs=67.5
Q ss_pred EEEeCCCCchHHHHHhhC-------CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEeccc-cc
Q 006905 215 AIDTGCGVASWGAYLLSR-------NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRC-LI 286 (626)
Q Consensus 215 VLDIGCGtG~~a~~La~~-------~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~-l~ 286 (626)
|||+|||+|..+..+.+. .++++|+++.++..+..+. .+.+.++.+.+.|...+++.+++||+|+|+.. ++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~-~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRF-SEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHS-HHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhc-hhcCCceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 799999999998888754 5677777664444332222 22456889999999999988899999999655 76
Q ss_pred cccccH-HHHHHHHHhcccCCe
Q 006905 287 PWNQFG-GIYLIEVDRVLRPGG 307 (626)
Q Consensus 287 h~~~~~-~~~L~Ei~RvLKPGG 307 (626)
|+.++. ..+++++.++|||||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 765433 789999999999998
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.3e-10 Score=120.96 Aligned_cols=107 Identities=21% Similarity=0.336 Sum_probs=72.7
Q ss_pred HHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-CcEEEeCCccchHHHHHHHHH----HcCCC--eEEEEcccccCCC
Q 006905 199 DDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-NIITMSFAPRDTHEAQVQFAL----ERGVP--ALIGVLAAERLPY 271 (626)
Q Consensus 199 ~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-~V~avdis~~dls~a~i~~A~----erg~~--~~~~v~d~~~Lpf 271 (626)
+.+.+.+.+.+ +.+|||||||.|.++.+++++ ++.++.+ .+++.|.+.++ +.|+. +.+...|...++.
T Consensus 52 ~~~~~~~~l~~--G~~vLDiGcGwG~~~~~~a~~~g~~v~gi---tlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~ 126 (273)
T PF02353_consen 52 DLLCEKLGLKP--GDRVLDIGCGWGGLAIYAAERYGCHVTGI---TLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG 126 (273)
T ss_dssp HHHHTTTT--T--T-EEEEES-TTSHHHHHHHHHH--EEEEE---ES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---
T ss_pred HHHHHHhCCCC--CCEEEEeCCCccHHHHHHHHHcCcEEEEE---ECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC
Confidence 34444554554 459999999999999999998 6555555 44666666654 44553 5666666666553
Q ss_pred CCCCeeEEEeccccccccc-cHHHHHHHHHhcccCCeEEEEEe
Q 006905 272 PSRAFDMAHCSRCLIPWNQ-FGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 272 ~d~sFDlV~~~~~l~h~~~-~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+||.|++..+++|... +...+++++.++|||||.+++..
T Consensus 127 ---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 127 ---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp ---S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred ---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 8999999999999864 34899999999999999999853
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-10 Score=120.22 Aligned_cols=99 Identities=16% Similarity=0.281 Sum_probs=75.7
Q ss_pred CEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEeccccccccc
Q 006905 213 RTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQ 290 (626)
Q Consensus 213 ~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~ 290 (626)
.+|||+|||+|.++.+|+++ .|+++|+++..+..+ .+.+...++.+.+.+.|....++ +++||+|+++.++++...
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~-~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~ 199 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENL-QEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLNR 199 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHH-HHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhCCH
Confidence 47999999999999999887 678888877555432 33455567766677677665555 678999999999866543
Q ss_pred -cHHHHHHHHHhcccCCeEEEEEe
Q 006905 291 -FGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 291 -~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+...+++++.|+|+|||++++..
T Consensus 200 ~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 200 ERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 33789999999999999977753
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.3e-10 Score=118.54 Aligned_cols=101 Identities=22% Similarity=0.218 Sum_probs=76.4
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCCCCCCCeeEEEecccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lpf~d~sFDlV~~~~~l 285 (626)
+.+|||||||+|..+..++.. .++++|+++.++..+... ....+. .+.+...+.+.+++++++||+|+++.++
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~-~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~ 156 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARAN-ARKAGYTNVEFRLGEIEALPVADNSVDVIISNCVI 156 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHH-HHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCcc
Confidence 559999999999876655543 488888877555443322 223343 4566777888899988999999999888
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 286 IPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 286 ~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++. .+...++.++.|+|||||.|++++.
T Consensus 157 ~~~-~d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 157 NLS-PDKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred cCC-CCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 554 4468899999999999999999753
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.7e-10 Score=120.68 Aligned_cols=99 Identities=19% Similarity=0.141 Sum_probs=73.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhCC---cEEEeCCccchHHHHHHHHHH---cCCCeEEEEcccccCCCCCCCeeEEEeccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSRN---IITMSFAPRDTHEAQVQFALE---RGVPALIGVLAAERLPYPSRAFDMAHCSRC 284 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~~---V~avdis~~dls~a~i~~A~e---rg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~ 284 (626)
.+++|||||||+|.++..++..+ |+++|.++.++... +.++. ....+.+..++.+.+|.. .+||+|+|+.+
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~--~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gv 197 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQF--EAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGV 197 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHH--HHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcch
Confidence 35699999999999998888763 67777766544321 12211 122455666677778764 48999999999
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 285 LIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 285 l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
++|+. ++..+|+++.|+|||||.|++..
T Consensus 198 L~H~~-dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 198 LYHRK-SPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred hhccC-CHHHHHHHHHHhcCCCCEEEEEE
Confidence 98875 46899999999999999999974
|
Known examples to date are restricted to the proteobacteria. |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.5e-10 Score=119.36 Aligned_cols=99 Identities=23% Similarity=0.247 Sum_probs=76.4
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIP 287 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h 287 (626)
..+|||||||+|.++..+++. .++++|+++.++..+..+.. ...+.+..+|.+.+++++++||+|+++.++++
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~ 190 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLPFPTDYADRYVSAGSIEY 190 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCCCCCCceeEEEEcChhhh
Confidence 458999999999988887663 57888886654443332211 12345677788889999999999999999977
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 288 WNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 288 ~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+.+ ...+|+++.|+|||||.+++..+
T Consensus 191 ~~d-~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 191 WPD-PQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred CCC-HHHHHHHHHHhcCCCcEEEEEEe
Confidence 665 58899999999999999998753
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-10 Score=118.20 Aligned_cols=99 Identities=21% Similarity=0.252 Sum_probs=83.4
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc------cceeccccccCCCCC-Cccceeeecccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL------VGTYTNWCEAMSTYP-RTYDLIHADSVF 542 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl------i~~~~~~~e~~~~yp-~t~Dlih~~~~f 542 (626)
-.+|||++||+|-+|..+++.-= .-.|+.+|.+++||.++.+|-. |..++.-.|.++ || +|||+|-++..+
T Consensus 52 g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP-f~D~sFD~vt~~fgl 129 (238)
T COG2226 52 GDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP-FPDNSFDAVTISFGL 129 (238)
T ss_pred CCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC-CCCCccCEEEeeehh
Confidence 56799999999999999987621 5589999999999999999987 234566667777 77 999999997777
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
-+.. +++.+|.||.|||||||.+++-|-
T Consensus 130 rnv~---d~~~aL~E~~RVlKpgG~~~vle~ 157 (238)
T COG2226 130 RNVT---DIDKALKEMYRVLKPGGRLLVLEF 157 (238)
T ss_pred hcCC---CHHHHHHHHHHhhcCCeEEEEEEc
Confidence 7666 679999999999999999998753
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-09 Score=107.48 Aligned_cols=153 Identities=17% Similarity=0.180 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHH----hcc--cceecc
Q 006905 448 ELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYE----RGL--VGTYTN 521 (626)
Q Consensus 448 ~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~----rgl--i~~~~~ 521 (626)
..|++++-.-..+...+.. -.+|||+|||+|.++..++... -...|+.+|.++.+++.+.+ .|+ +.+++.
T Consensus 27 ~~~~~~~~d~l~l~~~l~~---g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~ 102 (187)
T PRK00107 27 ELWERHILDSLAIAPYLPG---GERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHG 102 (187)
T ss_pred HHHHHHHHHHHHHHhhcCC---CCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEec
Confidence 4888888544444444544 3579999999999998887421 12379999999888876654 344 344443
Q ss_pred ccccCCCCCCccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHhCCCeeE--EeecCCC
Q 006905 522 WCEAMSTYPRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQ--IVDHEDG 599 (626)
Q Consensus 522 ~~e~~~~yp~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~l~w~~~--~~~~e~~ 599 (626)
-.+.+.. ..+||+|.+.. -.+++.++.++.|+|||||.+++-+.......+..++..+-|.+. +.-+-.|
T Consensus 103 d~~~~~~-~~~fDlV~~~~-------~~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 174 (187)
T PRK00107 103 RAEEFGQ-EEKFDVVTSRA-------VASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLPG 174 (187)
T ss_pred cHhhCCC-CCCccEEEEcc-------ccCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecCC
Confidence 3344433 47999999853 236789999999999999999999988889999999999999865 2222334
Q ss_pred CCCcceEEEEEec
Q 006905 600 PLEREKLLFAVKL 612 (626)
Q Consensus 600 ~~~~e~~l~~~K~ 612 (626)
-.++-.+.|.+|+
T Consensus 175 ~~~~~~~~~~~~~ 187 (187)
T PRK00107 175 LDGERHLVIIRKK 187 (187)
T ss_pred CCCcEEEEEEecC
Confidence 4445567777774
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.6e-10 Score=111.62 Aligned_cols=100 Identities=22% Similarity=0.285 Sum_probs=77.8
Q ss_pred EEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeE-EEEcccccCC-CCCCCeeEEEeccccccc
Q 006905 214 TAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPAL-IGVLAAERLP-YPSRAFDMAHCSRCLIPW 288 (626)
Q Consensus 214 ~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~~-~~v~d~~~Lp-f~d~sFDlV~~~~~l~h~ 288 (626)
.+|+||||||..-.++.-. .|+.+|.++.+-.-+....+..+..... +++++.+.+| .+++++|.|+|..+| ..
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL-CS 157 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVL-CS 157 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEE-ec
Confidence 5899999999766665532 5777777665554444444444444555 7888899998 899999999999998 66
Q ss_pred cccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 289 NQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 289 ~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.+++.+.|.|+.|+|||||.+++..+
T Consensus 158 ve~~~k~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 158 VEDPVKQLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 77789999999999999999999754
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.4e-10 Score=110.18 Aligned_cols=100 Identities=19% Similarity=0.356 Sum_probs=78.1
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWN 289 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~ 289 (626)
..++||+|||.|..+.+|+++ .|+++|.++..+.. ..+.|.+.++++...+.|.....++ +.||+|++..++++..
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~-l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~fL~ 108 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEK-LQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMFLQ 108 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHH-HHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGGS-
T ss_pred CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHH-HHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEeccCC
Confidence 458999999999999999998 57888888755543 4567778899988888887777765 6799999988886665
Q ss_pred ccH-HHHHHHHHhcccCCeEEEEEe
Q 006905 290 QFG-GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 290 ~~~-~~~L~Ei~RvLKPGG~lvis~ 313 (626)
.+. ..++..+...++|||++++..
T Consensus 109 ~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 109 RELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 544 678999999999999999854
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-09 Score=107.15 Aligned_cols=114 Identities=17% Similarity=0.119 Sum_probs=82.5
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCCCCCCCeeEEEeccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLPYPSRAFDMAHCSRCLI 286 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~ 286 (626)
+.+|||+|||+|.++..++.+ .|+++|.++.++..+.. .+++.+. .+.+...+...++. +++||+|+++..
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~-~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~-- 121 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLRE-VAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV-- 121 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHH-HHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc--
Confidence 568999999999988887753 68888887765554433 3334454 36777778777776 779999999652
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeCCCCcccccccccchhhhhHHHHHHHHHHHHhhchhh
Q 006905 287 PWNQFGGIYLIEVDRVLRPGGYWILSGPPINWKKHARGWQRTKEDLNKEQTAIENVAKSLCWEK 350 (626)
Q Consensus 287 h~~~~~~~~L~Ei~RvLKPGG~lvis~pp~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~ 350 (626)
.+...++.++.++|||||++++...+.. ...++++++.++|..
T Consensus 122 ---~~~~~~l~~~~~~LkpGG~lv~~~~~~~------------------~~~l~~~~~~~~~~~ 164 (187)
T PRK00107 122 ---ASLSDLVELCLPLLKPGGRFLALKGRDP------------------EEEIAELPKALGGKV 164 (187)
T ss_pred ---cCHHHHHHHHHHhcCCCeEEEEEeCCCh------------------HHHHHHHHHhcCceE
Confidence 2357899999999999999999854321 233666667777753
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.9e-10 Score=109.00 Aligned_cols=198 Identities=19% Similarity=0.240 Sum_probs=128.2
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWN 289 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~ 289 (626)
.++|.|+|||+|.-+..|+++ .....++ |.+.+|+..|+.+.+++.|..+|...+. ++..+|+++++.+| ||.
T Consensus 31 ~~~v~DLGCGpGnsTelL~~RwP~A~i~Gi---DsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dllfaNAvl-qWl 105 (257)
T COG4106 31 PRRVVDLGCGPGNSTELLARRWPDAVITGI---DSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDLLFANAVL-QWL 105 (257)
T ss_pred cceeeecCCCCCHHHHHHHHhCCCCeEeec---cCCHHHHHHHHHhCCCCceecccHhhcC-CCCccchhhhhhhh-hhc
Confidence 568999999999999999998 3333344 4566788888899999999988877765 56789999999998 898
Q ss_pred ccHHHHHHHHHhcccCCeEEEEEeCCCCcccccccccchhhhhHHHHHHHHHHHHhhchhhhcccccEEEEeccCccccc
Q 006905 290 QFGGIYLIEVDRVLRPGGYWILSGPPINWKKHARGWQRTKEDLNKEQTAIENVAKSLCWEKIKEKGDIAIWRKPINHLNC 369 (626)
Q Consensus 290 ~~~~~~L~Ei~RvLKPGG~lvis~pp~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v~~~~~~aiw~KP~~~~~c 369 (626)
.+-..+|..+...|.|||.|.+..|... ... ....|++.++...|......... .++|+-...-
T Consensus 106 pdH~~ll~rL~~~L~Pgg~LAVQmPdN~--------dep------sH~~mr~~A~~~p~~~~l~~~~~--~r~~v~s~a~ 169 (257)
T COG4106 106 PDHPELLPRLVSQLAPGGVLAVQMPDNL--------DEP------SHRLMRETADEAPFAQELGGRGL--TRAPLPSPAA 169 (257)
T ss_pred cccHHHHHHHHHhhCCCceEEEECCCcc--------Cch------hHHHHHHHHhcCchhhhhCcccc--ccCCCCCHHH
Confidence 8779999999999999999999876321 111 12235666666667665543322 3666654444
Q ss_pred cccccCCCCCCCCCCCCCCchhhhhccccccccccCC-ccccccCCccccCCcccccCCCccccCcccCCChhhchhhhH
Q 006905 370 KTNQKLSQNPPFCPVQDPDKAWYTQMGTCLTRLPEVS-SDRETAGGELAKWPQRLNAVPPRISKGTVKGITPEIFQQNSE 448 (626)
Q Consensus 370 ~~~~~~~~~p~~C~~~~~d~~wy~~l~~ci~~~p~~~-~~~~~~~~~~~~wp~rl~~~p~~~~~~~~~~~~~~~f~~d~~ 448 (626)
|-.+ -.+.-|+-|-=...||.+| |... ..+.+.+..+.+|=++| |.+
T Consensus 170 Yy~l---La~~~~rvDiW~T~Y~h~l-------~~a~aIvdWvkgTgLrP~L~~L----------------------~e~ 217 (257)
T COG4106 170 YYEL---LAPLACRVDIWHTTYYHQL-------PGADAIVDWVKGTGLRPYLDRL----------------------DEE 217 (257)
T ss_pred HHHH---hCcccceeeeeeeeccccC-------CCccchhhheeccccceecccc----------------------CHH
Confidence 4322 1133444332233344333 3221 12344444444444444 345
Q ss_pred HHHHHHHHHHHhhh
Q 006905 449 LWKKRLSYYKTMNN 462 (626)
Q Consensus 449 ~w~~~v~~y~~~~~ 462 (626)
.|+.-...|..++.
T Consensus 218 ~~~~FL~~Y~~~l~ 231 (257)
T COG4106 218 ERQRFLDRYLALLA 231 (257)
T ss_pred HHHHHHHHHHHHHH
Confidence 66777788887765
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-09 Score=109.48 Aligned_cols=108 Identities=17% Similarity=0.076 Sum_probs=77.7
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCC
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYP 272 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~ 272 (626)
.++.+.+.+.... ...+|||||||+|.++..|++. .++++|+++ .+++.|+++...+.+.+++... |++
T Consensus 30 ~~~~~~~~l~~~~-~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~-----~~l~~A~~~~~~~~~~~~d~~~-~~~ 102 (204)
T TIGR03587 30 KLAMFARALNRLP-KIASILELGANIGMNLAALKRLLPFKHIYGVEINE-----YAVEKAKAYLPNINIIQGSLFD-PFK 102 (204)
T ss_pred HHHHHHHHHHhcC-CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCH-----HHHHHHHhhCCCCcEEEeeccC-CCC
Confidence 3344444443222 3458999999999999988774 466666654 5666666654445566667666 888
Q ss_pred CCCeeEEEecccccccccc-HHHHHHHHHhcccCCeEEEEEe
Q 006905 273 SRAFDMAHCSRCLIPWNQF-GGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 273 d~sFDlV~~~~~l~h~~~~-~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+++||+|+++.+++|+..+ ...+++++.|++ ++++++..
T Consensus 103 ~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 103 DNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred CCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 9999999999999887643 378999999998 56777764
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.3e-10 Score=120.24 Aligned_cols=127 Identities=13% Similarity=0.238 Sum_probs=93.6
Q ss_pred hhchhhhHHHHHHHHHHHHhhhh--cCCC--------------CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCc
Q 006905 441 EIFQQNSELWKKRLSYYKTMNNQ--LGQS--------------GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKI 504 (626)
Q Consensus 441 ~~f~~d~~~w~~~v~~y~~~~~~--~~~~--------------~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~ 504 (626)
..|.+.++|-..++..|..+++. +.++ ..-..|||+|||+|+++..|++.. ..+|+.+|.++
T Consensus 8 ~~~~~~~~y~~~~~~~~e~~~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~ 85 (263)
T PTZ00098 8 ITYLENNQYSDEGIKAYEFIFGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICE 85 (263)
T ss_pred hhhhhccccccccchhHHHHhCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCH
Confidence 45777777777777777777652 2221 233569999999999999997641 23799999999
Q ss_pred ccHHHHHHhcc----cceeccccccCC--CCC-CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 505 NTLGVIYERGL----VGTYTNWCEAMS--TYP-RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 505 ~~l~~~~~rgl----i~~~~~~~e~~~--~yp-~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
+++..+.++.. +.+.+ ..+. +|| .+||+|++..+|.|... .+...+|.|+.|+|||||+++++|.
T Consensus 86 ~~~~~a~~~~~~~~~i~~~~---~D~~~~~~~~~~FD~V~s~~~l~h~~~-~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 86 KMVNIAKLRNSDKNKIEFEA---NDILKKDFPENTFDMIYSRDAILHLSY-ADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred HHHHHHHHHcCcCCceEEEE---CCcccCCCCCCCeEEEEEhhhHHhCCH-HHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 99999988743 22222 2222 356 89999999887777542 2568899999999999999999875
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.7e-10 Score=111.07 Aligned_cols=102 Identities=20% Similarity=0.261 Sum_probs=76.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEccc-ccCC--CCCCCeeEEEec
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAA-ERLP--YPSRAFDMAHCS 282 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~-~~Lp--f~d~sFDlV~~~ 282 (626)
+..+|||+|||+|.++..|++. .++++|+++.++..+..+.. ..+. ++.+.+.|+ ..++ +++++||+|+++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~-~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIE-EEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHH-HcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 3568999999999999988764 58999998865554443332 3343 467777787 6676 778899999997
Q ss_pred cccccccc--------cHHHHHHHHHhcccCCeEEEEEeC
Q 006905 283 RCLIPWNQ--------FGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 283 ~~l~h~~~--------~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++. +|.. ....+++++.++|||||+|++..+
T Consensus 119 ~~~-p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 119 FPD-PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred CCC-CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 754 4432 126789999999999999999854
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.5e-10 Score=114.71 Aligned_cols=123 Identities=20% Similarity=0.308 Sum_probs=85.5
Q ss_pred cCCCCCCCCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-CcEEEeCCccchHHHHHHHHH----HcCC
Q 006905 183 FPGGGTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-NIITMSFAPRDTHEAQVQFAL----ERGV 257 (626)
Q Consensus 183 Fp~ggt~F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-~V~avdis~~dls~a~i~~A~----erg~ 257 (626)
|+.......+.....++.+.+.+.+.+| .++||||||.|.++.+++++ ++.++++ ++|++|.+.++ ++|.
T Consensus 46 f~~~~~tL~eAQ~~k~~~~~~kl~L~~G--~~lLDiGCGWG~l~~~aA~~y~v~V~Gv---TlS~~Q~~~~~~r~~~~gl 120 (283)
T COG2230 46 FEDPDMTLEEAQRAKLDLILEKLGLKPG--MTLLDIGCGWGGLAIYAAEEYGVTVVGV---TLSEEQLAYAEKRIAARGL 120 (283)
T ss_pred eCCCCCChHHHHHHHHHHHHHhcCCCCC--CEEEEeCCChhHHHHHHHHHcCCEEEEe---eCCHHHHHHHHHHHHHcCC
Confidence 3433333434444455667777766664 49999999999999999998 4555554 34455555544 4465
Q ss_pred C--eEEEEcccccCCCCCCCeeEEEeccccccccccH-HHHHHHHHhcccCCeEEEEEe
Q 006905 258 P--ALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 258 ~--~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~ 313 (626)
. +.+... ..+...+.||-|++...++|+.... ..+|+.+.++|+|||.+++-.
T Consensus 121 ~~~v~v~l~---d~rd~~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 121 EDNVEVRLQ---DYRDFEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred CcccEEEec---cccccccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEE
Confidence 5 344433 3333345599999999999987644 889999999999999999964
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.4e-09 Score=103.57 Aligned_cols=123 Identities=18% Similarity=0.205 Sum_probs=80.0
Q ss_pred CCCCCc-HHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC-eEE
Q 006905 188 TMFPNG-ADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVP-ALI 261 (626)
Q Consensus 188 t~F~~g-a~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~-~~~ 261 (626)
.+|... .+.-...|.+.+... ...+|||+|||+|.++..++++ .++++|+++..+..+. +.+..+++. +.+
T Consensus 9 gvFs~~~~d~~t~lL~~~l~~~--~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~-~n~~~n~~~~v~~ 85 (170)
T PF05175_consen 9 GVFSPPRLDAGTRLLLDNLPKH--KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAK-RNAERNGLENVEV 85 (170)
T ss_dssp TSTTTTSHHHHHHHHHHHHHHH--TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHH-HHHHHTTCTTEEE
T ss_pred CeeCCCCCCHHHHHHHHHHhhc--cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH-HHHHhcCcccccc
Confidence 355533 333334555555543 3458999999999999999886 4889999875554333 334445555 666
Q ss_pred EEcccccCCCCCCCeeEEEeccccccccc----cHHHHHHHHHhcccCCeEEEEEeC
Q 006905 262 GVLAAERLPYPSRAFDMAHCSRCLIPWNQ----FGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 262 ~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~----~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
...|... +.++++||+|+|+..++.-.. ....++.+..+.|||||.|++...
T Consensus 86 ~~~d~~~-~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 86 VQSDLFE-ALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp EESSTTT-TCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccc-cccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 6555322 234689999999987633322 126789999999999999988743
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=6e-10 Score=126.38 Aligned_cols=101 Identities=18% Similarity=0.116 Sum_probs=77.7
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCC--CCCCCeeEEEecccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLP--YPSRAFDMAHCSRCL 285 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lp--f~d~sFDlV~~~~~l 285 (626)
+.+|||+|||+|.++..+++. .++++|+++.++..+..+. ...+.+..+..+|...+| +++++||+|+++.++
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl-~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKK-QNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHh-hhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 458999999999988888763 7888888776555443322 233455666777877787 788999999999988
Q ss_pred cccc------------ccHHHHHHHHHhcccCCeEEEEEe
Q 006905 286 IPWN------------QFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 286 ~h~~------------~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
|+|. .+...+|+++.|+|||||.+++..
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 7653 234789999999999999999975
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.9e-10 Score=113.14 Aligned_cols=98 Identities=17% Similarity=0.222 Sum_probs=76.6
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-cceeccccccCCCCC-CccceeeeccccccC
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-VGTYTNWCEAMSTYP-RTYDLIHADSVFSLY 545 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-i~~~~~~~e~~~~yp-~t~Dlih~~~~f~~~ 545 (626)
....+|||+|||+|.++..|++.+. .|+.+|.++.++..+.++.. +.....-.+.+ +++ ++||+|.++.++...
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~-~~~~~~fD~V~s~~~l~~~ 116 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKDAADHYLAGDIESL-PLATATFDLAWSNLAVQWC 116 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCCEEEcCcccC-cCCCCcEEEEEECchhhhc
Confidence 3467899999999999999988764 78999999999999998863 22222112332 244 799999998777644
Q ss_pred CCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 546 KDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 546 ~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
. +...+|.|+.|+|||||.++++.
T Consensus 117 ~---d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 117 G---NLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred C---CHHHHHHHHHHHcCCCeEEEEEe
Confidence 3 56899999999999999999984
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.5e-10 Score=116.17 Aligned_cols=114 Identities=19% Similarity=0.284 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc------cceecc
Q 006905 448 ELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL------VGTYTN 521 (626)
Q Consensus 448 ~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl------i~~~~~ 521 (626)
+.|++.+.... . +.+ -..|||++||+|-++..|++.----..|+.+|.+++||.++.+|.- |..+..
T Consensus 33 ~~wr~~~~~~~---~-~~~---g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~ 105 (233)
T PF01209_consen 33 RRWRRKLIKLL---G-LRP---GDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQG 105 (233)
T ss_dssp ----SHHHHHH---T---S-----EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-
T ss_pred HHHHHHHHhcc---C-CCC---CCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEc
Confidence 67888665432 1 233 3489999999999999998752223379999999999999998743 333333
Q ss_pred ccccCCCCC-CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 522 WCEAMSTYP-RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 522 ~~e~~~~yp-~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
-.|.++ || +|||.|-+...+.... +.+..|.||.|||||||.++|-|
T Consensus 106 da~~lp-~~d~sfD~v~~~fglrn~~---d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 106 DAEDLP-FPDNSFDAVTCSFGLRNFP---DRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp BTTB---S-TT-EEEEEEES-GGG-S---SHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CHHHhc-CCCCceeEEEHHhhHHhhC---CHHHHHHHHHHHcCCCeEEEEee
Confidence 344443 56 9999999977777665 56999999999999999999975
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.4e-11 Score=110.25 Aligned_cols=96 Identities=23% Similarity=0.389 Sum_probs=76.5
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceeccccccCCCCC-CccceeeeccccccCC
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYP-RTYDLIHADSVFSLYK 546 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~yp-~t~Dlih~~~~f~~~~ 546 (626)
....+|||+|||.|.++..|++.+. +|+.+|.++.+++. +......++ ......| ++||+|+|..+|.+..
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~~~~~~--~~~~~~~~~~fD~i~~~~~l~~~~ 92 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVVFDNFD--AQDPPFPDGSFDLIICNDVLEHLP 92 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSEEEEEE--CHTHHCHSSSEEEEEEESSGGGSS
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhhhhhhh--hhhhhccccchhhHhhHHHHhhcc
Confidence 3466899999999999999999887 89999999778777 222222211 1122234 9999999999999998
Q ss_pred CCCCHHHHHHHhhhhccCCcEEEEEcCh
Q 006905 547 DRCETEDILLEMDRILRPEGGVIFRDDV 574 (626)
Q Consensus 547 ~~c~~~~~l~E~dRiLRPgG~~i~~d~~ 574 (626)
+...+|.+|.|+|||||++++++..
T Consensus 93 ---d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 93 ---DPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp ---HHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred ---cHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 4789999999999999999999765
|
... |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.6e-09 Score=111.05 Aligned_cols=123 Identities=20% Similarity=0.204 Sum_probs=80.0
Q ss_pred CCCCCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEE
Q 006905 187 GTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPALIGV 263 (626)
Q Consensus 187 gt~F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~~~~v 263 (626)
+..|+.|.........+++......+.+|||+|||+|.++..+++. .++++|+++..+..++.+ +..+++......
T Consensus 135 g~aFgtG~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n-~~~n~~~~~~~~ 213 (288)
T TIGR00406 135 GLAFGTGTHPTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKN-AELNQVSDRLQV 213 (288)
T ss_pred CCcccCCCCHHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHH-HHHcCCCcceEE
Confidence 3446666555555444444422223569999999999998887765 588999988666544433 333444322211
Q ss_pred cccccCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 264 LAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 264 ~d~~~Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
......+..+++||+|+++... .....++.++.++|||||+|++++.
T Consensus 214 ~~~~~~~~~~~~fDlVvan~~~----~~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 214 KLIYLEQPIEGKADVIVANILA----EVIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred EecccccccCCCceEEEEecCH----HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 1111233456789999997643 2235789999999999999999864
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.6e-10 Score=115.49 Aligned_cols=99 Identities=18% Similarity=0.139 Sum_probs=76.3
Q ss_pred ceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhcc---------cceeccccccCCCCC-Cccceeee
Q 006905 470 YRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERGL---------VGTYTNWCEAMSTYP-RTYDLIHA 538 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rgl---------i~~~~~~~e~~~~yp-~t~Dlih~ 538 (626)
-.+|||+|||+|.++..|+++ +. .-+|+.+|.+++|++.+.+|.- +.....-.+.+ ++| ++||+|.+
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~-~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p~~~~sfD~V~~ 151 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGS-DGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-PFDDCYFDAITM 151 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-CCCCCCEeEEEE
Confidence 457999999999999988765 21 1278999999999999987631 22333223333 355 89999999
Q ss_pred ccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 539 DSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 539 ~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
..++.+.. +...+|.||.|+|||||.+++.|-
T Consensus 152 ~~~l~~~~---d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 152 GYGLRNVV---DRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred ecccccCC---CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 88888776 568999999999999999999863
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.7e-09 Score=107.30 Aligned_cols=102 Identities=16% Similarity=0.043 Sum_probs=74.7
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHH------------HcCCCeEEEEcccccCCCC-CCCe
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFAL------------ERGVPALIGVLAAERLPYP-SRAF 276 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~------------erg~~~~~~v~d~~~Lpf~-d~sF 276 (626)
+.+|||+|||.|..+.+|+++ .|+++|+++..+..++.+... .++..+.+.++|...++.. .+.|
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~f 114 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPV 114 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCCc
Confidence 458999999999999999998 677888877544432111100 0123466778887776642 4579
Q ss_pred eEEEeccccccccccH-HHHHHHHHhcccCCeEEEEEe
Q 006905 277 DMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 277 DlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~ 313 (626)
|.|+-..+++|++.+. ..++..+.++|||||++++.+
T Consensus 115 D~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 115 DAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred CEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 9999988888887655 679999999999999877754
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=9.1e-10 Score=113.17 Aligned_cols=107 Identities=15% Similarity=0.167 Sum_probs=81.5
Q ss_pred HhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceeccccccCCCCCCccceeee
Q 006905 459 TMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYPRTYDLIHA 538 (626)
Q Consensus 459 ~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~yp~t~Dlih~ 538 (626)
.++..+.. ..-..|||+|||.|.++..|+++. -...|+.+|.++.|+..+.++++ .+.+.=.+.+. ...+||+|++
T Consensus 20 ~ll~~l~~-~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~~~-~~~~~d~~~~~-~~~~fD~v~~ 95 (255)
T PRK14103 20 DLLARVGA-ERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARERGV-DARTGDVRDWK-PKPDTDVVVS 95 (255)
T ss_pred HHHHhCCC-CCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhcCC-cEEEcChhhCC-CCCCceEEEE
Confidence 34554544 445789999999999999998761 11378999999999999999874 33332122221 1279999999
Q ss_pred ccccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 539 DSVFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 539 ~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
+.+|.+.. +.+.+|.++.|+|||||++++..
T Consensus 96 ~~~l~~~~---d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 96 NAALQWVP---EHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred ehhhhhCC---CHHHHHHHHHHhCCCCcEEEEEc
Confidence 99998876 45889999999999999999973
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.1e-09 Score=94.80 Aligned_cols=108 Identities=19% Similarity=0.049 Sum_probs=73.3
Q ss_pred HHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEccccc-CCCC
Q 006905 199 DDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAER-LPYP 272 (626)
Q Consensus 199 ~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~-Lpf~ 272 (626)
..+.+.+.... ..+|||+|||+|.++..++++ .++++|+++..+..+..... ..+. ...+...+... ++..
T Consensus 9 ~~~~~~~~~~~--~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~ 85 (124)
T TIGR02469 9 ALTLSKLRLRP--GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNAR-RFGVSNIVIVEGDAPEALEDS 85 (124)
T ss_pred HHHHHHcCCCC--CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHH-HhCCCceEEEeccccccChhh
Confidence 33444443333 458999999999999999875 57888887755544433322 3333 35555555443 3344
Q ss_pred CCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 273 SRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 273 d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
..+||.|++.....+ ...+++++.++|+|||+|++..
T Consensus 86 ~~~~D~v~~~~~~~~----~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 86 LPEPDRVFIGGSGGL----LQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred cCCCCEEEECCcchh----HHHHHHHHHHHcCCCCEEEEEe
Confidence 468999999765422 3588999999999999999974
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.3e-09 Score=113.12 Aligned_cols=103 Identities=17% Similarity=0.253 Sum_probs=72.4
Q ss_pred CCCEEEEeCCCCch----HHHHHhhC---------CcEEEeCCccchHHHHHHHH---HHcC------------------
Q 006905 211 SIRTAIDTGCGVAS----WGAYLLSR---------NIITMSFAPRDTHEAQVQFA---LERG------------------ 256 (626)
Q Consensus 211 ~~~~VLDIGCGtG~----~a~~La~~---------~V~avdis~~dls~a~i~~A---~erg------------------ 256 (626)
...+|||+|||+|. ++..|++. .|+++|+++.++..+....- .-++
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 34689999999994 55555442 47777776654443332100 0001
Q ss_pred ------CCeEEEEcccccCCCCCCCeeEEEeccccccccccH-HHHHHHHHhcccCCeEEEEEe
Q 006905 257 ------VPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 257 ------~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~ 313 (626)
..+.+.+.|....++++++||+|+|.++++|+.... ..++.++.++|+|||+|++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 135677778777777788999999999998776432 689999999999999999963
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.6e-09 Score=112.16 Aligned_cols=122 Identities=21% Similarity=0.259 Sum_probs=84.7
Q ss_pred CCCCCCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEE
Q 006905 186 GGTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPALIG 262 (626)
Q Consensus 186 ggt~F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~~~~ 262 (626)
.|..|+.|...-.....+++.....++.+|||+|||+|.++...++. .|+++|+++..+. ...+.+..+++...+.
T Consensus 136 Pg~AFGTG~H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~-~a~~N~~~N~~~~~~~ 214 (295)
T PF06325_consen 136 PGMAFGTGHHPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVE-AARENAELNGVEDRIE 214 (295)
T ss_dssp TTSSS-SSHCHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHH-HHHHHHHHTT-TTCEE
T ss_pred CCCcccCCCCHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHH-HHHHHHHHcCCCeeEE
Confidence 45678999988887777777644444569999999999777766664 6899999996554 3444566677665444
Q ss_pred EcccccCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 263 VLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 263 v~d~~~Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+... .......||+|++|... +-...++..+.++|+|||+|++|+-
T Consensus 215 v~~~--~~~~~~~~dlvvANI~~----~vL~~l~~~~~~~l~~~G~lIlSGI 260 (295)
T PF06325_consen 215 VSLS--EDLVEGKFDLVVANILA----DVLLELAPDIASLLKPGGYLILSGI 260 (295)
T ss_dssp ESCT--SCTCCS-EEEEEEES-H----HHHHHHHHHCHHHEEEEEEEEEEEE
T ss_pred EEEe--cccccccCCEEEECCCH----HHHHHHHHHHHHhhCCCCEEEEccc
Confidence 3322 22335889999998744 2236788889999999999999974
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.3e-10 Score=115.34 Aligned_cols=111 Identities=16% Similarity=0.237 Sum_probs=78.6
Q ss_pred HHHHHHhhhh--cCCCCCceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHH----HHhcccceeccccccC
Q 006905 454 LSYYKTMNNQ--LGQSGRYRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVI----YERGLVGTYTNWCEAM 526 (626)
Q Consensus 454 v~~y~~~~~~--~~~~~~~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~----~~rgli~~~~~~~e~~ 526 (626)
...+..++.. |.+ -.+|||+|||.|+++.+++++ ++ +|+.+..|+++.+.+ .++||.+...--+..+
T Consensus 48 ~~k~~~~~~~~~l~~---G~~vLDiGcGwG~~~~~~a~~~g~---~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~ 121 (273)
T PF02353_consen 48 ERKLDLLCEKLGLKP---GDRVLDIGCGWGGLAIYAAERYGC---HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDY 121 (273)
T ss_dssp HHHHHHHHTTTT--T---T-EEEEES-TTSHHHHHHHHHH-----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-G
T ss_pred HHHHHHHHHHhCCCC---CCEEEEeCCCccHHHHHHHHHcCc---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeec
Confidence 3334444443 555 458999999999999999998 87 788888998888865 4667644444345667
Q ss_pred CCCCCccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 527 STYPRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 527 ~~yp~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
..++.+||-|.+.++|.|...+ +.+.++.+++|+|||||.+++.
T Consensus 122 ~~~~~~fD~IvSi~~~Ehvg~~-~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 122 RDLPGKFDRIVSIEMFEHVGRK-NYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp GG---S-SEEEEESEGGGTCGG-GHHHHHHHHHHHSETTEEEEEE
T ss_pred cccCCCCCEEEEEechhhcChh-HHHHHHHHHHHhcCCCcEEEEE
Confidence 7778899999999999999753 7789999999999999999874
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.7e-09 Score=108.48 Aligned_cols=98 Identities=18% Similarity=0.279 Sum_probs=72.4
Q ss_pred EEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCCCCCCCeeEEEecccccc
Q 006905 214 TAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLPYPSRAFDMAHCSRCLIP 287 (626)
Q Consensus 214 ~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h 287 (626)
+|||||||+|.++..+++. .++++|+++..+..+... ....+. .+.+...|....|++ ++||+|++..+++|
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~-~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRER-IRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 6999999999999888874 467777766443332222 223333 346666676566665 48999999999977
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 288 WNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 288 ~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
..+ ...+|.++.++|||||++++...
T Consensus 80 ~~~-~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 80 IKD-KMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred CCC-HHHHHHHHHHHcCCCCEEEEEEc
Confidence 654 68999999999999999999864
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.5e-09 Score=115.41 Aligned_cols=105 Identities=23% Similarity=0.352 Sum_probs=75.2
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHc--CCCeEEEEcccccCCCCCC
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALER--GVPALIGVLAAERLPYPSR 274 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~er--g~~~~~~v~d~~~Lpf~d~ 274 (626)
.+.+.+.+.+ +.+|||||||+|.++..++++ .|+++|+++ .+++.++++ +..+.+...|...+ ++
T Consensus 158 ~l~~~l~l~~--g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~-----~~l~~A~~~~~~l~v~~~~~D~~~l---~~ 227 (383)
T PRK11705 158 LICRKLQLKP--GMRVLDIGCGWGGLARYAAEHYGVSVVGVTISA-----EQQKLAQERCAGLPVEIRLQDYRDL---NG 227 (383)
T ss_pred HHHHHhCCCC--CCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHhccCeEEEEECchhhc---CC
Confidence 3444444333 458999999999999999875 466666655 555555544 33455555555444 47
Q ss_pred CeeEEEeccccccccc-cHHHHHHHHHhcccCCeEEEEEeC
Q 006905 275 AFDMAHCSRCLIPWNQ-FGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 275 sFDlV~~~~~l~h~~~-~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+||+|++..+++|... +...++.++.|+|||||++++...
T Consensus 228 ~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 228 QFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred CCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 8999999998877643 237899999999999999999753
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.6e-09 Score=105.58 Aligned_cols=101 Identities=18% Similarity=0.252 Sum_probs=74.7
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCC---CCCCCeeEEEecc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLP---YPSRAFDMAHCSR 283 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lp---f~d~sFDlV~~~~ 283 (626)
..++||||||+|.++..++.+ .++++|+++..+..+..+ +...++ .+.+..+|+..++ +++++||.|+++.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~-~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNK-ANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHH-HHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 458999999999999998876 688999877655444333 333444 4667777766543 5567999999987
Q ss_pred ccccccccH--------HHHHHHHHhcccCCeEEEEEeC
Q 006905 284 CLIPWNQFG--------GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 284 ~l~h~~~~~--------~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.. +|.... ..++.++.|+|||||.|++...
T Consensus 96 pd-pw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 96 PD-PWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred CC-cCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 54 564421 4689999999999999999753
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.3e-07 Score=102.58 Aligned_cols=130 Identities=16% Similarity=0.154 Sum_probs=88.1
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc-----cceeccccccCCCCC-Cccceeeecc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL-----VGTYTNWCEAMSTYP-RTYDLIHADS 540 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl-----i~~~~~~~e~~~~yp-~t~Dlih~~~ 540 (626)
..|||+|||+|-.+.+|+++. ....|+.+|.++.+++.+.+. +. +.+++ ...++..+ .+||+|.|+-
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~--~D~l~~~~~~~fDlIlsNP 306 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMI--NNALSGVEPFRFNAVLCNP 306 (378)
T ss_pred CeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEE--ccccccCCCCCEEEEEECc
Confidence 479999999999999998762 113788999998888887653 11 22232 23344454 6999999988
Q ss_pred ccccCCC--CCCHHHHHHHhhhhccCCcEEEEEc--ChHHHHHHHHHHHhCCCeeEEeecCCCCCCcceEEEEEe
Q 006905 541 VFSLYKD--RCETEDILLEMDRILRPEGGVIFRD--DVDELVKVKRIIDALKWQSQIVDHEDGPLEREKLLFAVK 611 (626)
Q Consensus 541 ~f~~~~~--~c~~~~~l~E~dRiLRPgG~~i~~d--~~~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K 611 (626)
-|..... .-....++.+..|+|||||.++|-- ..+...++++++. ++.++... .+-+|+-++|
T Consensus 307 Pfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~fg----~~~~va~~----~kf~vl~a~k 373 (378)
T PRK15001 307 PFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG----NCTTIATN----NKFVVLKAVK 373 (378)
T ss_pred CcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHcC----CceEEccC----CCEEEEEEEe
Confidence 8764321 1123568899999999999999963 2345666666544 33333222 4567887777
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.7e-09 Score=106.90 Aligned_cols=102 Identities=17% Similarity=0.164 Sum_probs=71.8
Q ss_pred HHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCC---
Q 006905 199 DDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLP--- 270 (626)
Q Consensus 199 ~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lp--- 270 (626)
.++.+...+. .++.+|||||||+|.++..++++ .|+++|+++. . .-..+.+..+|....+
T Consensus 40 ~~~~~~~~~~-~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-~----------~~~~v~~i~~D~~~~~~~~ 107 (209)
T PRK11188 40 DEIQQSDKLF-KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-D----------PIVGVDFLQGDFRDELVLK 107 (209)
T ss_pred HHHHHHhccC-CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-c----------CCCCcEEEecCCCChHHHH
Confidence 3444444421 22458999999999999988775 4888888761 1 1123566777766642
Q ss_pred -----CCCCCeeEEEeccccccccccH-----------HHHHHHHHhcccCCeEEEEEe
Q 006905 271 -----YPSRAFDMAHCSRCLIPWNQFG-----------GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 271 -----f~d~sFDlV~~~~~l~h~~~~~-----------~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+.+++||+|+|+.+. ++...+ ..+|.++.++|||||.|++..
T Consensus 108 ~i~~~~~~~~~D~V~S~~~~-~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~ 165 (209)
T PRK11188 108 ALLERVGDSKVQVVMSDMAP-NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV 165 (209)
T ss_pred HHHHHhCCCCCCEEecCCCC-ccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 567899999998766 333221 358999999999999999964
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-09 Score=108.42 Aligned_cols=95 Identities=15% Similarity=0.211 Sum_probs=71.9
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHH----hcccceeccccccCCC--CCCccceeeecccccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYE----RGLVGTYTNWCEAMST--YPRTYDLIHADSVFSL 544 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~----rgli~~~~~~~e~~~~--yp~t~Dlih~~~~f~~ 544 (626)
.+|||+|||.|.++.+|++++. +|+.+|.++.+++.+.+ +|+-. ++--+..+.. ++.+||+|.|..+|.+
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~fD~I~~~~~~~~ 107 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENLDN-LHTAVVDLNNLTFDGEYDFILSTVVLMF 107 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCCCc-ceEEecChhhCCcCCCcCEEEEecchhh
Confidence 5799999999999999999875 89999999888886554 34311 1111233333 3588999999988876
Q ss_pred CCCCCCHHHHHHHhhhhccCCcEEEE
Q 006905 545 YKDRCETEDILLEMDRILRPEGGVIF 570 (626)
Q Consensus 545 ~~~~c~~~~~l~E~dRiLRPgG~~i~ 570 (626)
.. ..++..++.+|.|+|||||++++
T Consensus 108 ~~-~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 108 LE-AKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred CC-HHHHHHHHHHHHHHcCCCcEEEE
Confidence 54 23568899999999999999655
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=98.95 E-value=6e-10 Score=99.02 Aligned_cols=98 Identities=20% Similarity=0.328 Sum_probs=74.9
Q ss_pred eeEEeccCchhhHhhhhhC--CCeEEEEeccCccCcccHHHHHHhc----c---cceec-cccccCCCCCCccceeeecc
Q 006905 471 RNILDMNAHLGGFAAALID--FPVWVMNVVPAEAKINTLGVIYERG----L---VGTYT-NWCEAMSTYPRTYDLIHADS 540 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~--~~v~~mnv~~~~~~~~~l~~~~~rg----l---i~~~~-~~~e~~~~yp~t~Dlih~~~ 540 (626)
.+|||+|||.|.++.+|++ .+. +|+.+|.++.+++.+.++- . |..++ |+ +.....+..||+|.+.+
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGA---RVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSG 78 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTS---EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECS
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECC
Confidence 4689999999999999999 666 7999999999999998886 2 34444 33 22244457799999998
Q ss_pred -ccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 541 -VFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 541 -~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
.+.++-+..+...+|.++.+.|||||+++|++
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 79 FTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 23323222345779999999999999999975
|
... |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.9e-09 Score=111.21 Aligned_cols=122 Identities=20% Similarity=0.249 Sum_probs=81.2
Q ss_pred CCCCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEc
Q 006905 188 TMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPALIGVL 264 (626)
Q Consensus 188 t~F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~~~~v~ 264 (626)
-.|+.|...-...-.+.+.....++++|||+|||+|.++...++. .++++|++|..+.. ..+.++.++++......
T Consensus 139 lAFGTG~HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~a-a~eNa~~N~v~~~~~~~ 217 (300)
T COG2264 139 LAFGTGTHPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEA-ARENARLNGVELLVQAK 217 (300)
T ss_pred cccCCCCChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHH-HHHHHHHcCCchhhhcc
Confidence 446666555544444444433335679999999999888887776 58899998865543 33455566765311111
Q ss_pred ccccCCCCC-CCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 265 AAERLPYPS-RAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 265 d~~~Lpf~d-~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
....+..+. +.||+|++|... +....+..++.+.|||||++++|+-
T Consensus 218 ~~~~~~~~~~~~~DvIVANILA----~vl~~La~~~~~~lkpgg~lIlSGI 264 (300)
T COG2264 218 GFLLLEVPENGPFDVIVANILA----EVLVELAPDIKRLLKPGGRLILSGI 264 (300)
T ss_pred cccchhhcccCcccEEEehhhH----HHHHHHHHHHHHHcCCCceEEEEee
Confidence 122223334 589999998833 2236889999999999999999974
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.1e-09 Score=102.62 Aligned_cols=108 Identities=22% Similarity=0.279 Sum_probs=79.0
Q ss_pred HHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcC---CCeEEEEcccccCC
Q 006905 199 DDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERG---VPALIGVLAAERLP 270 (626)
Q Consensus 199 ~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg---~~~~~~v~d~~~Lp 270 (626)
+.+.+.+... ++.+|||+|||+|.++..+++. .++++|+++. +++.+.++. ..+.+...+...++
T Consensus 29 ~~~~~~~~~~--~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~-----~~~~~~~~~~~~~~i~~~~~d~~~~~ 101 (223)
T TIGR01934 29 RRAVKLIGVF--KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSE-----MLEVAKKKSELPLNIEFIQADAEALP 101 (223)
T ss_pred HHHHHHhccC--CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHH-----HHHHHHHHhccCCCceEEecchhcCC
Confidence 3444444333 3568999999999999888775 4667777553 334443332 23566677887888
Q ss_pred CCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 271 YPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 271 f~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+++++||+|+++..+++.. +...+++++.++|+|||.+++...
T Consensus 102 ~~~~~~D~i~~~~~~~~~~-~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 102 FEDNSFDAVTIAFGLRNVT-DIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred CCCCcEEEEEEeeeeCCcc-cHHHHHHHHHHHcCCCcEEEEEEe
Confidence 8888999999999885554 468999999999999999998753
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.3e-09 Score=107.37 Aligned_cols=133 Identities=17% Similarity=0.205 Sum_probs=88.1
Q ss_pred CCceecCCCCCCCCCcHHHHH-HHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHH
Q 006905 178 GDRFRFPGGGTMFPNGADAYI-DDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFA 252 (626)
Q Consensus 178 ge~~~Fp~ggt~F~~ga~~yi-~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A 252 (626)
+..+.|-....+|+.+.-++- +.|.+-++...+ .+|||+|||.|.++..|++. .++-+|++...+..++.+.+
T Consensus 126 ~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~~~--~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~ 203 (300)
T COG2813 126 GHELTFKTLPGVFSRDKLDKGSRLLLETLPPDLG--GKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLA 203 (300)
T ss_pred cCceEEEeCCCCCcCCCcChHHHHHHHhCCccCC--CcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHH
Confidence 455666555666666544442 344555543332 28999999999999999987 57777886655544443333
Q ss_pred HHcCCCeEEEEcccccCCCCCCCeeEEEeccccccccccHH----HHHHHHHhcccCCeEEEEEeC
Q 006905 253 LERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGG----IYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 253 ~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~~~~----~~L~Ei~RvLKPGG~lvis~p 314 (626)
.+++....+..+....+..+ +||+|+||.-+|.-..-.. +++.+..+.|++||.|+|+..
T Consensus 204 -~N~~~~~~v~~s~~~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 204 -ANGVENTEVWASNLYEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred -HcCCCccEEEEecccccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 34454422223333444444 8999999998854433333 899999999999999999865
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.2e-09 Score=117.34 Aligned_cols=96 Identities=19% Similarity=0.208 Sum_probs=74.0
Q ss_pred ceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHh----cc---cceeccccccCCCCC-Cccceeeecc
Q 006905 470 YRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYER----GL---VGTYTNWCEAMSTYP-RTYDLIHADS 540 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~~~~e~~~~yp-~t~Dlih~~~ 540 (626)
..+|||+|||.|+++..|+++ +. +|+.+|.++.+++.+.++ |+ +.....=.+.+ ++| ++||+|++..
T Consensus 119 ~~~VLDiGCG~G~~~~~La~~~g~---~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~-~~~~~~FD~V~s~~ 194 (340)
T PLN02244 119 PKRIVDVGCGIGGSSRYLARKYGA---NVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ-PFEDGQFDLVWSME 194 (340)
T ss_pred CCeEEEecCCCCHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC-CCCCCCccEEEECC
Confidence 467999999999999999886 44 789999998998876553 44 22222111122 345 8999999988
Q ss_pred ccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 541 VFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 541 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
++.|..+ ...+|.||.|+|||||.++|.+
T Consensus 195 ~~~h~~d---~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 195 SGEHMPD---KRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred chhccCC---HHHHHHHHHHHcCCCcEEEEEE
Confidence 8888764 5889999999999999999964
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=98.93 E-value=8.6e-09 Score=101.04 Aligned_cols=96 Identities=20% Similarity=0.199 Sum_probs=70.0
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCCCCCCCeeEEEeccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLPYPSRAFDMAHCSRCLI 286 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~ 286 (626)
+.+|||+|||+|.++..++.. .|+++|.++.++..+. +.+.+.+. .+.+..++...++ .+++||+|+|.. +
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~-~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~- 118 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLR-EVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L- 118 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHH-HHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h-
Confidence 568999999999988887643 5889998876554332 33334455 3667777877764 357899999865 3
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 287 PWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 287 h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+ +...++..+.++|+|||.+++...
T Consensus 119 ~---~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 119 A---SLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred h---CHHHHHHHHHHhcCCCCEEEEEcC
Confidence 2 235688899999999999998743
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.4e-09 Score=104.88 Aligned_cols=95 Identities=17% Similarity=0.191 Sum_probs=68.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhC--------CcEEEeCCccchHHHHHHHHHHcC--CCeEEEEcccccCCCCCCCeeEEE
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR--------NIITMSFAPRDTHEAQVQFALERG--VPALIGVLAAERLPYPSRAFDMAH 280 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~--------~V~avdis~~dls~a~i~~A~erg--~~~~~~v~d~~~Lpf~d~sFDlV~ 280 (626)
...+|||||||+|.++..|++. .++++|+++ .+++.|+++. ..+.+.+.+...+++++++||+|+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~-----~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~ 134 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDP-----RAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVT 134 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCH-----HHHHHHHhccccCCCeEEEEecccccccCCCccEEE
Confidence 3568999999999988887641 577777766 4445554432 223444556666777788999999
Q ss_pred eccccccccccH-HHHHHHHHhcccCCeEEEEE
Q 006905 281 CSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 281 ~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis 312 (626)
|+.+++|+.++. ..+|+++.|+++ |.+++.
T Consensus 135 ~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~ 165 (232)
T PRK06202 135 SNHFLHHLDDAEVVRLLADSAALAR--RLVLHN 165 (232)
T ss_pred ECCeeecCChHHHHHHHHHHHHhcC--eeEEEe
Confidence 999998876542 579999999998 455554
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.4e-09 Score=111.95 Aligned_cols=97 Identities=16% Similarity=0.203 Sum_probs=76.7
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc---cceeccccccCCCCC-Cccceeeeccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL---VGTYTNWCEAMSTYP-RTYDLIHADSV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~~~~e~~~~yp-~t~Dlih~~~~ 541 (626)
-.+|||+|||.|.++..|++.+. +|+.+|.++.|+..+.++ |+ +.+++.-.+.+..++ ++||+|.+..+
T Consensus 45 ~~~vLDiGcG~G~~a~~la~~g~---~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAELGH---QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCEEEEeCCCchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 35899999999999999999875 899999999999988775 33 223332222333344 89999999999
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
|.+.. +...+|.++.|+|||||.+++..
T Consensus 122 l~~~~---~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 122 LEWVA---DPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred HHhhC---CHHHHHHHHHHHcCCCeEEEEEE
Confidence 98876 44789999999999999998863
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=98.91 E-value=9.9e-09 Score=100.78 Aligned_cols=101 Identities=21% Similarity=0.276 Sum_probs=71.6
Q ss_pred cCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcC---CCeEEEEcccccCCCCCCCeeEEEe
Q 006905 207 LNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERG---VPALIGVLAAERLPYPSRAFDMAHC 281 (626)
Q Consensus 207 l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg---~~~~~~v~d~~~Lpf~d~sFDlV~~ 281 (626)
+..+..+++||+|||.|.++..|+.+ .++++|+++ .+++.|++|- ..+.+.+.+.... .|.+.||+|++
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~-----~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~ 112 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISP-----RALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVL 112 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-H-----HHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEE
T ss_pred cCccccceeEecCCCccHHHHHHHHhhCceEEEeCCH-----HHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEE
Confidence 34555678999999999999999998 788888855 5556666552 2466776665443 46889999999
Q ss_pred ccccccccc--cHHHHHHHHHhcccCCeEEEEEe
Q 006905 282 SRCLIPWNQ--FGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 282 ~~~l~h~~~--~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+.+++.+.+ +...++..+...|+|||.||+..
T Consensus 113 SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 113 SEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp ES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 999966643 23678999999999999999975
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.5e-08 Score=104.07 Aligned_cols=114 Identities=21% Similarity=0.221 Sum_probs=71.5
Q ss_pred CCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEccc
Q 006905 190 FPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPALIGVLAA 266 (626)
Q Consensus 190 F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~ 266 (626)
|+.+.........+.+......+.+|||+|||+|.++..+++. .++++|+++..+..+..+ +..+++...+.
T Consensus 98 fgtg~h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n-~~~~~~~~~~~---- 172 (250)
T PRK00517 98 FGTGTHPTTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAAREN-AELNGVELNVY---- 172 (250)
T ss_pred cCCCCCHHHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHH-HHHcCCCceEE----
Confidence 3444444333333333322234568999999999988887765 478888877655443333 33344421111
Q ss_pred ccCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 267 ERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 267 ~~Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++..+.+||+|+++... .....++.++.++|||||++++++.
T Consensus 173 --~~~~~~~fD~Vvani~~----~~~~~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 173 --LPQGDLKADVIVANILA----NPLLELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred --EccCCCCcCEEEEcCcH----HHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 22222379999997643 2235788999999999999999864
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.3e-08 Score=109.39 Aligned_cols=99 Identities=15% Similarity=0.151 Sum_probs=73.1
Q ss_pred CEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEeccccccc
Q 006905 213 RTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPW 288 (626)
Q Consensus 213 ~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~ 288 (626)
.+|||+|||+|.++..++++ .++++|+++..+..+..+. ..+++...+...|... ..++.||+|+|+..+|..
T Consensus 198 g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl-~~n~l~~~~~~~D~~~--~~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATL-AANGLEGEVFASNVFS--DIKGRFDMIISNPPFHDG 274 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCEEEEccccc--ccCCCccEEEECCCccCC
Confidence 37999999999999998875 5888898876666554433 3455655555555332 235789999999988543
Q ss_pred cc----cHHHHHHHHHhcccCCeEEEEEeC
Q 006905 289 NQ----FGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 289 ~~----~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.. ....++.++.++|||||.|+|+..
T Consensus 275 ~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 275 IQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 22 226899999999999999999864
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.8e-08 Score=116.21 Aligned_cols=123 Identities=15% Similarity=0.159 Sum_probs=83.5
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc----c----cceec-cccccCCCCCCccceeeeccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG----L----VGTYT-NWCEAMSTYPRTYDLIHADSV 541 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg----l----i~~~~-~~~e~~~~yp~t~Dlih~~~~ 541 (626)
++|||+|||+|+|+.+++..+.- .|+.+|.++.+++.+.+.- + +.+++ |..+-+..+.++||+|-++-=
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 67999999999999999988652 5899999999998776643 2 11222 222212223579999988521
Q ss_pred -cccCCC-------CCCHHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHhCCCeeEEee
Q 006905 542 -FSLYKD-------RCETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQIVD 595 (626)
Q Consensus 542 -f~~~~~-------~c~~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~l~w~~~~~~ 595 (626)
|..... .-+...++...-|+|+|||.+++...........+.+..-.++.++..
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i~ 679 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEIT 679 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEEe
Confidence 221110 113456888889999999999987555444445667777788888664
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.4e-09 Score=113.99 Aligned_cols=96 Identities=11% Similarity=0.192 Sum_probs=77.0
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc----c---cceeccccccCCCCCCccceeeeccccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG----L---VGTYTNWCEAMSTYPRTYDLIHADSVFS 543 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg----l---i~~~~~~~e~~~~yp~t~Dlih~~~~f~ 543 (626)
.+|||+|||.|.++..|+..+. +|+.+|.++.+++++.++. + |..++.-.+.+...+++||+|-|..++.
T Consensus 133 ~~ILDIGCG~G~~s~~La~~g~---~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLARMGA---TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CEEEEeeCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 4799999999999999998765 8999999999999998763 1 2223322233332237999999999999
Q ss_pred cCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 544 LYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 544 ~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
|.. +.+.+|.|+.|+|||||.++|++
T Consensus 210 Hv~---d~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 210 HVA---NPAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred hcC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 887 45899999999999999999985
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.9e-09 Score=103.31 Aligned_cols=113 Identities=16% Similarity=0.162 Sum_probs=78.6
Q ss_pred HHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCCC
Q 006905 196 AYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLPY 271 (626)
Q Consensus 196 ~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lpf 271 (626)
...+.+.+.+........+|||+|||+|.++..+++. .++++|+++.++..++.+.. ..+. .+.+.+.|...++
T Consensus 40 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~-~~~~~~~i~~~~~d~~~~~- 117 (219)
T TIGR02021 40 AMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQ-GRDVAGNVEFEVNDLLSLC- 117 (219)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH-hcCCCCceEEEECChhhCC-
Confidence 3444455555421233568999999999999999886 57788887755544333322 2232 4667777776665
Q ss_pred CCCCeeEEEeccccccccc-cHHHHHHHHHhcccCCeEEEEE
Q 006905 272 PSRAFDMAHCSRCLIPWNQ-FGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 272 ~d~sFDlV~~~~~l~h~~~-~~~~~L~Ei~RvLKPGG~lvis 312 (626)
++||+|++..+++|+.. +...++.++.+++++++++.+.
T Consensus 118 --~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 118 --GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred --CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 78999999998878754 3378899999999987776654
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.5e-08 Score=107.59 Aligned_cols=116 Identities=19% Similarity=0.169 Sum_probs=73.0
Q ss_pred HHHHHHHHhhccC-CCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHH-----cCCCeEEEEcccc
Q 006905 196 AYIDDIGKLINLN-DGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALE-----RGVPALIGVLAAE 267 (626)
Q Consensus 196 ~yi~~L~~ll~l~-~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~e-----rg~~~~~~v~d~~ 267 (626)
..++.+.+++... ...+.+|||||||+|.++..|+++ .|+++|+++.++..++.+.... ......+...|..
T Consensus 128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~ 207 (315)
T PLN02585 128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE 207 (315)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh
Confidence 3445555555432 223568999999999999999987 5788888776665444332221 0123455555544
Q ss_pred cCCCCCCCeeEEEeccccccccccH-HHHHHHHHhcccCCeEEEEEeCCC
Q 006905 268 RLPYPSRAFDMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILSGPPI 316 (626)
Q Consensus 268 ~Lpf~d~sFDlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~pp~ 316 (626)
.+ +++||+|+|..+++|+.++. ..++..+.+ +.+||. +|+..|.
T Consensus 208 ~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~l-iIs~~p~ 252 (315)
T PLN02585 208 SL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRL-IISFAPK 252 (315)
T ss_pred hc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEE-EEEeCCc
Confidence 33 57899999999998887644 345555654 456555 4554433
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.4e-08 Score=101.35 Aligned_cols=107 Identities=15% Similarity=0.059 Sum_probs=73.3
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEcccccC
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAERL 269 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~L 269 (626)
....+.+.+...+ +.+|||+|||+|..+..|++. .++++|+++.....+. +.....+.. +.+..+|....
T Consensus 60 ~~~~~~~~l~~~~--~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~-~~l~~~~~~~~v~~~~~d~~~~ 136 (205)
T PRK13944 60 MVAMMCELIEPRP--GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAA-QNIERLGYWGVVEVYHGDGKRG 136 (205)
T ss_pred HHHHHHHhcCCCC--CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCCcEEEEECCcccC
Confidence 3445555554433 458999999999999888763 5888888775444333 233344543 56666776554
Q ss_pred CCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 270 PYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 270 pf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
.....+||+|++..++.+. ..++.++|+|||.|++..
T Consensus 137 ~~~~~~fD~Ii~~~~~~~~-------~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 137 LEKHAPFDAIIVTAAASTI-------PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred CccCCCccEEEEccCcchh-------hHHHHHhcCcCcEEEEEE
Confidence 4445789999998876443 247889999999999864
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.2e-09 Score=104.13 Aligned_cols=96 Identities=15% Similarity=0.084 Sum_probs=71.5
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC----------------CeEEEEcccccCCCC-
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV----------------PALIGVLAAERLPYP- 272 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~----------------~~~~~v~d~~~Lpf~- 272 (626)
..+|||+|||.|..+..|+++ .|+++|+++..+..+ +.++++ .+.+.++|...++..
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~----~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQF----FAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHH----HHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 458999999999999999998 577777766444322 223332 355667777766533
Q ss_pred CCCeeEEEeccccccccccH-HHHHHHHHhcccCCeEEEE
Q 006905 273 SRAFDMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWIL 311 (626)
Q Consensus 273 d~sFDlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvi 311 (626)
...||+|+-..+++|++... ..++..+.++|+|||.+++
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 35899999988888886554 7899999999999997555
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.6e-09 Score=110.89 Aligned_cols=115 Identities=16% Similarity=0.170 Sum_probs=84.0
Q ss_pred eEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cccceeccccccCCC--CCCccceeeeccccccC
Q 006905 472 NILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GLVGTYTNWCEAMST--YPRTYDLIHADSVFSLY 545 (626)
Q Consensus 472 ~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gli~~~~~~~e~~~~--yp~t~Dlih~~~~f~~~ 545 (626)
+|||+|||.|.++.+|++++. .|+.+|.++.+++.+.++ |+ . ++--+..+.. .+.+||+|.+..+|.+.
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~---~V~avD~s~~ai~~~~~~~~~~~l-~-v~~~~~D~~~~~~~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGF---DVTAVDINQQSLENLQEIAEKENL-N-IRTGLYDINSASIQEEYDFILSTVVLMFL 197 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHcCC-c-eEEEEechhcccccCCccEEEEcchhhhC
Confidence 799999999999999999875 899999998888876443 44 1 1111222322 25899999999998876
Q ss_pred CCCCCHHHHHHHhhhhccCCcEEEEEc---Ch-----------HHHHHHHHHHHhCCCeeEEe
Q 006905 546 KDRCETEDILLEMDRILRPEGGVIFRD---DV-----------DELVKVKRIIDALKWQSQIV 594 (626)
Q Consensus 546 ~~~c~~~~~l~E~dRiLRPgG~~i~~d---~~-----------~~~~~~~~~~~~l~w~~~~~ 594 (626)
.. .+++.++.+|.|+|+|||++++-. .. -.-..++++++. |++..+
T Consensus 198 ~~-~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 198 NR-ERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred CH-HHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEE
Confidence 43 467889999999999999966531 11 124567777766 887754
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.1e-08 Score=110.69 Aligned_cols=100 Identities=23% Similarity=0.256 Sum_probs=77.6
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccC--CCCCCCeeEEEeccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERL--PYPSRAFDMAHCSRC 284 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~L--pf~d~sFDlV~~~~~ 284 (626)
...+||||||+|.++..++.+ .++++|+++.++..+..+ +...++ ++.+..+|+..+ .+++++||.|++++.
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~k-a~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQ-IELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHH-HHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 458999999999999999975 789999988666555444 445555 455667776554 478899999999876
Q ss_pred cccccccH------HHHHHHHHhcccCCeEEEEEe
Q 006905 285 LIPWNQFG------GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 285 l~h~~~~~------~~~L~Ei~RvLKPGG~lvis~ 313 (626)
. +|+... ..++.++.|+|+|||.+.+.+
T Consensus 202 d-PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 202 V-PWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred C-CccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 4 776433 479999999999999999974
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.88 E-value=1e-08 Score=106.69 Aligned_cols=101 Identities=23% Similarity=0.260 Sum_probs=74.4
Q ss_pred CCCCEEEEeCCCCchHHHHHhhCCc-EEEeCCccchHHHHHHHHHHc-CCCe--EEEEcccccCCCCCCCeeEEEecccc
Q 006905 210 GSIRTAIDTGCGVASWGAYLLSRNI-ITMSFAPRDTHEAQVQFALER-GVPA--LIGVLAAERLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 210 ~~~~~VLDIGCGtG~~a~~La~~~V-~avdis~~dls~a~i~~A~er-g~~~--~~~v~d~~~Lpf~d~sFDlV~~~~~l 285 (626)
-.+++|||||||+|.++.+|+.++. .++.++|....-.|-+++++- |... ...-...+.+|. .++||+|+|..+|
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVL 192 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVL 192 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeeh
Confidence 3477999999999999999999843 244444444444444444332 2222 222245888887 7899999999999
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEE
Q 006905 286 IPWNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 286 ~h~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
.|..+ +-..|.++...|+|||.+++.
T Consensus 193 YHrr~-Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 193 YHRRS-PLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred hccCC-HHHHHHHHHHhhCCCCEEEEE
Confidence 88765 689999999999999999985
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.6e-09 Score=105.96 Aligned_cols=96 Identities=22% Similarity=0.270 Sum_probs=69.4
Q ss_pred CCEEEEeCCCCchHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCC--C---------eEEEEcccccCCCCCCCeeEEE
Q 006905 212 IRTAIDTGCGVASWGAYLLSRNIITMSFAPRDTHEAQVQFALERGV--P---------ALIGVLAAERLPYPSRAFDMAH 280 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~~V~avdis~~dls~a~i~~A~erg~--~---------~~~~v~d~~~Lpf~d~sFDlV~ 280 (626)
+++|||+|||+|.++..|++.+..++.+ |+++.+++.|++..- | +.+...+.+.+ .+.||+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GI---D~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVv 163 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGI---DASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVV 163 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEee---cccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceee
Confidence 5789999999999999999985444444 445566666654421 1 11122222222 24599999
Q ss_pred eccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 281 CSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 281 ~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
|+.+++|..+ +..++..+.+.|||||.++|+.-
T Consensus 164 csevleHV~d-p~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 164 CSEVLEHVKD-PQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred eHHHHHHHhC-HHHHHHHHHHHhCCCCceEeeeh
Confidence 9999988865 68999999999999999999864
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.8e-08 Score=98.06 Aligned_cols=100 Identities=17% Similarity=0.157 Sum_probs=72.1
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWN 289 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~ 289 (626)
..+|||+|||+|.++..++.. .++++|+++.++..+..+.. ..+....+...|....+ .++||+|+++..+++..
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAK-LNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPLE 96 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHH-HcCCceEEEEccccccc--CCcccEEEECCCCCCCc
Confidence 347999999999999999887 47888887755544433332 34555566666654433 45899999998775543
Q ss_pred cc--------------------HHHHHHHHHhcccCCeEEEEEeC
Q 006905 290 QF--------------------GGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 290 ~~--------------------~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.. ...++.++.|+|||||.+++..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~ 141 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQS 141 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence 21 24679999999999999999754
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.5e-08 Score=109.80 Aligned_cols=110 Identities=14% Similarity=0.130 Sum_probs=73.9
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC----CeEEEEcccccCCC
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV----PALIGVLAAERLPY 271 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~----~~~~~v~d~~~Lpf 271 (626)
.+.+.++... ..+|||+|||+|.++..++++ .++++|+++..+..++.+.. .++. .+.+...|... .+
T Consensus 219 llL~~lp~~~--~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~-~n~~~~~~~v~~~~~D~l~-~~ 294 (378)
T PRK15001 219 FFMQHLPENL--EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVE-TNMPEALDRCEFMINNALS-GV 294 (378)
T ss_pred HHHHhCCccc--CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcCcccCceEEEEEccccc-cC
Confidence 3444444322 348999999999999999875 68899988765555444433 2222 23444444322 13
Q ss_pred CCCCeeEEEecccccccc--c-c-HHHHHHHHHhcccCCeEEEEEe
Q 006905 272 PSRAFDMAHCSRCLIPWN--Q-F-GGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 272 ~d~sFDlV~~~~~l~h~~--~-~-~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+..+||+|+|+..+|.-. . . ...++.++.++|+|||.|+++.
T Consensus 295 ~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 295 EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 456899999998774321 1 1 2578999999999999999985
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.2e-08 Score=100.55 Aligned_cols=102 Identities=21% Similarity=0.217 Sum_probs=75.5
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHH-cCCCeEEEEcccccCCCCCCCeeEEEecccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALE-RGVPALIGVLAAERLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~e-rg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l 285 (626)
..+|||+|||+|.++..++.. .++++|+++..+..+..+.... ....+.+...+...+++++++||+|+++.++
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l 131 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGL 131 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEeccc
Confidence 458999999999998888764 5778888664444333222211 0124567777877788778899999999988
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 286 IPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 286 ~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+++. +...+|.++.++|+|||.+++...
T Consensus 132 ~~~~-~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 132 RNVP-DIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred ccCC-CHHHHHHHHHHhccCCcEEEEEEe
Confidence 6554 468899999999999999998753
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.9e-08 Score=101.67 Aligned_cols=102 Identities=20% Similarity=0.321 Sum_probs=73.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCC-CCCCCeeEEEecccccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLP-YPSRAFDMAHCSRCLIP 287 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lp-f~d~sFDlV~~~~~l~h 287 (626)
...+|||||||+|.++..+++. .++++|+++..+..+... ....+....+...+...++ ..++.||+|+++.+++|
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~ 126 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLH-ALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEH 126 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHH-HHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhc
Confidence 3568999999999999888876 467777765433322222 2223444556556655554 34578999999998866
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 288 WNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 288 ~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
..+ ...+|.++.++|+|||.++++.+
T Consensus 127 ~~~-~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 127 VPD-PASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred cCC-HHHHHHHHHHHcCCCcEEEEEec
Confidence 654 68899999999999999999865
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.2e-09 Score=104.41 Aligned_cols=92 Identities=21% Similarity=0.278 Sum_probs=67.6
Q ss_pred CEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEE-----EcccccCCCC--CCCeeEEEecc
Q 006905 213 RTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIG-----VLAAERLPYP--SRAFDMAHCSR 283 (626)
Q Consensus 213 ~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~-----v~d~~~Lpf~--d~sFDlV~~~~ 283 (626)
+.++|+|||+|..+..+++. .|+++|+ +++|+++|.+.. ++... ..+.+..++. ++|.|+|+|..
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD~-----s~~mL~~a~k~~-~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aq 108 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIATDV-----SEAMLKVAKKHP-PVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQ 108 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhheeecC-----CHHHHHHhhcCC-CcccccCCccccccccccccCCCcceeeehhhh
Confidence 48999999999766667775 8998887 446777776543 22221 1122233443 89999999999
Q ss_pred ccccccccHHHHHHHHHhcccCCe-EEEEE
Q 006905 284 CLIPWNQFGGIYLIEVDRVLRPGG-YWILS 312 (626)
Q Consensus 284 ~l~h~~~~~~~~L~Ei~RvLKPGG-~lvis 312 (626)
|+ ||.+ .+.+++++.|+||+.| .+.+-
T Consensus 109 a~-HWFd-le~fy~~~~rvLRk~Gg~iavW 136 (261)
T KOG3010|consen 109 AV-HWFD-LERFYKEAYRVLRKDGGLIAVW 136 (261)
T ss_pred hH-Hhhc-hHHHHHHHHHHcCCCCCEEEEE
Confidence 99 9997 4999999999999977 55554
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.3e-09 Score=113.99 Aligned_cols=98 Identities=18% Similarity=0.244 Sum_probs=76.9
Q ss_pred ceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhcccc-eeccccccCCCCCCccceeeeccccccCCC
Q 006905 470 YRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERGLVG-TYTNWCEAMSTYPRTYDLIHADSVFSLYKD 547 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rgli~-~~~~~~e~~~~yp~t~Dlih~~~~f~~~~~ 547 (626)
-.+|||+|||.|+++..+++. ++ .|+.+|.++++++.+.++.- + .++-.+..+...+.+||+|.+..+|.+...
T Consensus 168 g~rVLDIGcG~G~~a~~la~~~g~---~V~giDlS~~~l~~A~~~~~-~l~v~~~~~D~~~l~~~fD~Ivs~~~~ehvg~ 243 (383)
T PRK11705 168 GMRVLDIGCGWGGLARYAAEHYGV---SVVGVTISAEQQKLAQERCA-GLPVEIRLQDYRDLNGQFDRIVSVGMFEHVGP 243 (383)
T ss_pred CCEEEEeCCCccHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhc-cCeEEEEECchhhcCCCCCEEEEeCchhhCCh
Confidence 457999999999999999875 55 78999999999999988752 1 011112333344689999999999988754
Q ss_pred CCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 548 RCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 548 ~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
+ +.+.++.++.|+|||||++++.+
T Consensus 244 ~-~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 244 K-NYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred H-HHHHHHHHHHHHcCCCcEEEEEE
Confidence 3 56789999999999999999964
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.2e-09 Score=104.22 Aligned_cols=95 Identities=18% Similarity=0.236 Sum_probs=71.5
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cccceeccccccCC--CCCCccceeeecccccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GLVGTYTNWCEAMS--TYPRTYDLIHADSVFSL 544 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gli~~~~~~~e~~~--~yp~t~Dlih~~~~f~~ 544 (626)
.+|||+|||+|.++.+|++++. .|+.+|.++.++..+.++ |+ .+... +..+. .++.+||+|.+..+|.+
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g~---~V~~iD~s~~~l~~a~~~~~~~~~-~v~~~-~~d~~~~~~~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAGY---DVRAWDHNPASIASVLDMKARENL-PLRTD-AYDINAAALNEDYDFIFSTVVFMF 106 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHhCC-CceeE-eccchhccccCCCCEEEEeccccc
Confidence 4799999999999999999864 799999999999876543 43 11111 11122 23578999999999876
Q ss_pred CCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 545 YKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 545 ~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
... -+++.++.++.|+|+|||++++-
T Consensus 107 ~~~-~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 107 LQA-GRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred CCH-HHHHHHHHHHHHHhCCCcEEEEE
Confidence 643 36688999999999999995553
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.5e-08 Score=94.77 Aligned_cols=105 Identities=15% Similarity=0.014 Sum_probs=70.9
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCCCCCC
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLPYPSR 274 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lpf~d~ 274 (626)
.+...+... ...+|||+|||+|.++..++++ .++++|+++..+..++.+. ...+. .+.+...+.. .++ .+
T Consensus 22 ~~~~~l~~~--~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~-~~~~~~~i~~~~~d~~-~~~-~~ 96 (187)
T PRK08287 22 LALSKLELH--RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENR-QRFGCGNIDIIPGEAP-IEL-PG 96 (187)
T ss_pred HHHHhcCCC--CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HHhCCCCeEEEecCch-hhc-Cc
Confidence 334444433 3458999999999999888764 6889999875554443332 23333 3445544442 233 35
Q ss_pred CeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 275 AFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 275 sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+||+|++..... ....++.++.++|+|||++++..
T Consensus 97 ~~D~v~~~~~~~----~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 97 KADAIFIGGSGG----NLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred CCCEEEECCCcc----CHHHHHHHHHHhcCCCeEEEEEE
Confidence 799999977542 23568899999999999999864
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.2e-08 Score=99.74 Aligned_cols=100 Identities=18% Similarity=0.193 Sum_probs=73.4
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc----c--cceeccccccCCCCC-Cccceeeecccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG----L--VGTYTNWCEAMSTYP-RTYDLIHADSVF 542 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg----l--i~~~~~~~e~~~~yp-~t~Dlih~~~~f 542 (626)
-.+|||+|||.|.++..|++.---..+|+.+|.++++++.+.++. + +.+++.=.+.+ ++| ++||+|++..++
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~V~~~~~l 124 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMEL-PFDDNSFDYVTIGFGL 124 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcC-CCCCCCccEEEEeccc
Confidence 357999999999999999865101137899999989998777652 2 22333212222 245 899999998887
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
.+.. +...+|.|+.|+|||||++++.+.
T Consensus 125 ~~~~---~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 125 RNVP---DYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred ccCC---CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 7665 457899999999999999998764
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.84 E-value=8e-09 Score=109.55 Aligned_cols=116 Identities=13% Similarity=0.146 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHH--HHh--cccceeccccc
Q 006905 449 LWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVI--YER--GLVGTYTNWCE 524 (626)
Q Consensus 449 ~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~--~~r--gli~~~~~~~e 524 (626)
.|...+. |..++..++. -.-++|||+|||.|.++..|+..+.- .|+++|.++.|+..+ ..+ +..+..+-...
T Consensus 103 e~~s~~~-~~~~l~~l~~-~~g~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~ 178 (314)
T TIGR00452 103 EWRSDIK-WDRVLPHLSP-LKGRTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPL 178 (314)
T ss_pred HHHHHHH-HHHHHHhcCC-CCCCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEEC
Confidence 3444443 3334443443 33478999999999999999887652 589999987777542 111 11111111112
Q ss_pred cCCCCC--CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 525 AMSTYP--RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 525 ~~~~yp--~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
.+..+| .+||+|.|.+++.|.. +...+|.|+.|+|||||.+|+.
T Consensus 179 ~ie~lp~~~~FD~V~s~gvL~H~~---dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 179 GIEQLHELYAFDTVFSMGVLYHRK---SPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred CHHHCCCCCCcCEEEEcchhhccC---CHHHHHHHHHHhcCCCCEEEEE
Confidence 233333 6899999999998765 6689999999999999999986
|
Known examples to date are restricted to the proteobacteria. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.3e-08 Score=100.38 Aligned_cols=109 Identities=13% Similarity=0.091 Sum_probs=74.5
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEccccc
Q 006905 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAER 268 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~ 268 (626)
......+.+.+...+ +.+|||||||+|.++..|++. .++++|+++.....+.. .....+. ++.+..+|...
T Consensus 62 p~~~~~~~~~l~~~~--g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~-~l~~~g~~~v~~~~gd~~~ 138 (212)
T PRK13942 62 IHMVAIMCELLDLKE--GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKK-TLKKLGYDNVEVIVGDGTL 138 (212)
T ss_pred HHHHHHHHHHcCCCC--cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCCeEEEECCccc
Confidence 334445556665444 459999999999999887764 57888887754443332 2333344 46677777665
Q ss_pred CCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 269 LPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 269 Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
...+.+.||+|++..+..+ +...+.+.|||||.|++..
T Consensus 139 ~~~~~~~fD~I~~~~~~~~-------~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 139 GYEENAPYDRIYVTAAGPD-------IPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCCcCCCcCEEEECCCccc-------chHHHHHhhCCCcEEEEEE
Confidence 5556788999999776532 2246777899999999964
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.1e-08 Score=102.96 Aligned_cols=125 Identities=13% Similarity=0.209 Sum_probs=87.0
Q ss_pred hhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-cceeccccccCCCC--CCcccee
Q 006905 460 MNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-VGTYTNWCEAMSTY--PRTYDLI 536 (626)
Q Consensus 460 ~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-i~~~~~~~e~~~~y--p~t~Dli 536 (626)
++..+.. ....+|||+|||.|.++..|++.. -..+|+.+|.++.+++.+.++-- +.+.. ..+.++ +.+||+|
T Consensus 23 ll~~~~~-~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~~~~~~~---~d~~~~~~~~~fD~v 97 (258)
T PRK01683 23 LLARVPL-ENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLPDCQFVE---ADIASWQPPQALDLI 97 (258)
T ss_pred HHhhCCC-cCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCCCCeEEE---CchhccCCCCCccEE
Confidence 3333443 446789999999999999998751 12378999999999999887732 22322 222222 3799999
Q ss_pred eeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh----HHHHHHHHHHHhCCCeeE
Q 006905 537 HADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV----DELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 537 h~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~----~~~~~~~~~~~~l~w~~~ 592 (626)
+++.+|.+.. +...+|.++.|+|||||.+++.-.. .....++++.....|...
T Consensus 98 ~~~~~l~~~~---d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 154 (258)
T PRK01683 98 FANASLQWLP---DHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQN 154 (258)
T ss_pred EEccChhhCC---CHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHH
Confidence 9999988765 4588999999999999999996321 122334555555566544
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.5e-08 Score=97.50 Aligned_cols=115 Identities=17% Similarity=0.237 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEccccc
Q 006905 194 ADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAER 268 (626)
Q Consensus 194 a~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~~ 268 (626)
...+++.+.+.+. ....+|||+|||+|.++..+++. .++++|+++..+..+.. .+...+.. +.+..+|...
T Consensus 73 ~~~l~~~~l~~~~---~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~-~~~~~~~~~~~~~~~d~~~ 148 (251)
T TIGR03534 73 TEELVEAALERLK---KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARK-NAARLGLDNVTFLQSDWFE 148 (251)
T ss_pred hHHHHHHHHHhcc---cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCeEEEEECchhc
Confidence 3445555544443 22458999999999999999875 67888887755543332 23344554 5666666544
Q ss_pred CCCCCCCeeEEEecccccccc------cc-------------------HHHHHHHHHhcccCCeEEEEEe
Q 006905 269 LPYPSRAFDMAHCSRCLIPWN------QF-------------------GGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 269 Lpf~d~sFDlV~~~~~l~h~~------~~-------------------~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
++++++||+|+|+..++... .. ...++.++.++|+|||.+++..
T Consensus 149 -~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 149 -PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred -cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 45678999999976543211 00 1257889999999999999974
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.3e-08 Score=103.28 Aligned_cols=106 Identities=17% Similarity=0.248 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceeccccccCC
Q 006905 448 ELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMS 527 (626)
Q Consensus 448 ~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~ 527 (626)
..|++.+..... ..+.. -.+|||+|||+|.++..|++.. ..+|+.+|.+++||+.+.+++ ..++...+.+
T Consensus 35 ~~wr~~~~~~l~--~~~~~---~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~--~~~~~d~~~l- 104 (226)
T PRK05785 35 VRWRAELVKTIL--KYCGR---PKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD--DKVVGSFEAL- 104 (226)
T ss_pred HHHHHHHHHHHH--HhcCC---CCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc--ceEEechhhC-
Confidence 567765543221 11222 3579999999999999998872 128999999999999999875 3344444554
Q ss_pred CCC-CccceeeeccccccCCCCCCHHHHHHHhhhhccCCc
Q 006905 528 TYP-RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEG 566 (626)
Q Consensus 528 ~yp-~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG 566 (626)
++| ++||+|.+...+.+.. +++.+|.||.|||||.+
T Consensus 105 p~~d~sfD~v~~~~~l~~~~---d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 105 PFRDKSFDVVMSSFALHASD---NIEKVIAEFTRVSRKQV 141 (226)
T ss_pred CCCCCCEEEEEecChhhccC---CHHHHHHHHHHHhcCce
Confidence 355 9999999988776544 67999999999999954
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1e-08 Score=109.35 Aligned_cols=96 Identities=17% Similarity=0.156 Sum_probs=70.0
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHH--HHhcc-----cceeccccccCCCCCCccceeeecccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVI--YERGL-----VGTYTNWCEAMSTYPRTYDLIHADSVF 542 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~--~~rgl-----i~~~~~~~e~~~~yp~t~Dlih~~~~f 542 (626)
-+.|||+|||.|.++..|++.+.- .|+.+|.++.++... ..+.. +.+...=.+.++. +.+||+|+|.+++
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl 199 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVL 199 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChh
Confidence 368999999999999999987532 488999887766432 22211 2222211123332 5899999999998
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
.|.. +...+|.++.|+|||||.+|+.
T Consensus 200 ~H~~---dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 200 YHRR---SPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred hccC---CHHHHHHHHHHhcCCCcEEEEE
Confidence 7754 6689999999999999999986
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.5e-08 Score=98.81 Aligned_cols=101 Identities=18% Similarity=0.271 Sum_probs=74.4
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCCCC-CCCeeEEEecccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLPYP-SRAFDMAHCSRCLIP 287 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lpf~-d~sFDlV~~~~~l~h 287 (626)
..+|||+|||+|.++..+++. .++++|+++..+..+..+.. ..+. .+.+...+...++.. .++||+|+++.++++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~ 124 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAK-KDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEH 124 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH-HcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHh
Confidence 568999999999999888775 57777776654443332222 2344 466666676666544 378999999998855
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 288 WNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 288 ~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.. ++..+|.++.++|+|||.++++..
T Consensus 125 ~~-~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 125 VP-DPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred CC-CHHHHHHHHHHhcCCCcEEEEEec
Confidence 54 568999999999999999998764
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.6e-08 Score=98.92 Aligned_cols=107 Identities=14% Similarity=0.148 Sum_probs=73.2
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--C---cEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCC
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--N---IITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLP 270 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~---V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lp 270 (626)
....+.+.+.... +.+|||||||+|.++..|++. . |+++|+++..+..+. +.+.+.+. .+.+...|.....
T Consensus 65 ~~~~~~~~l~~~~--~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~-~~~~~~g~~~v~~~~~d~~~~~ 141 (215)
T TIGR00080 65 MVAMMTELLELKP--GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAE-RRLRKLGLDNVIVIVGDGTQGW 141 (215)
T ss_pred HHHHHHHHhCCCC--cCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHCCCCCeEEEECCcccCC
Confidence 3345555555444 459999999999999988875 2 889998875444333 33334454 3566666765544
Q ss_pred CCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 271 YPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 271 f~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
.....||+|++..+..+ +...+.+.|+|||+|++..
T Consensus 142 ~~~~~fD~Ii~~~~~~~-------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 142 EPLAPYDRIYVTAAGPK-------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred cccCCCCEEEEcCCccc-------ccHHHHHhcCcCcEEEEEE
Confidence 34568999998765422 3356789999999999864
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.7e-08 Score=98.91 Aligned_cols=109 Identities=23% Similarity=0.287 Sum_probs=71.9
Q ss_pred HHHHHHHhhcc-CCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCCC
Q 006905 197 YIDDIGKLINL-NDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLPY 271 (626)
Q Consensus 197 yi~~L~~ll~l-~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lpf 271 (626)
..+.+...+.. ...+..+|||||||+|.++..|++. .++++|+++.++..+..... ..+. .+.+...| ++.
T Consensus 48 ~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~-~~~~~~~i~~~~~d---~~~ 123 (230)
T PRK07580 48 MRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAP-EAGLAGNITFEVGD---LES 123 (230)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHH-hcCCccCcEEEEcC---chh
Confidence 33444555543 1223568999999999999999876 57788887755554443332 2233 34555555 445
Q ss_pred CCCCeeEEEeccccccccccH-HHHHHHHHhcccCCeEE
Q 006905 272 PSRAFDMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYW 309 (626)
Q Consensus 272 ~d~sFDlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~l 309 (626)
.+++||+|++..+++|+.... ..+++++.+++++++.+
T Consensus 124 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 124 LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIF 162 (230)
T ss_pred ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEE
Confidence 568899999999998876533 67888888877554443
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.5e-09 Score=104.82 Aligned_cols=116 Identities=19% Similarity=0.271 Sum_probs=84.2
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc---cceec-cccccCCCCCCccceeeecccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL---VGTYT-NWCEAMSTYPRTYDLIHADSVF 542 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~-~~~e~~~~yp~t~Dlih~~~~f 542 (626)
+.|||+|||.|+++..+++.. --.+|+.+|.+++++..+.++ |+ +.+.. |..+. ++|.+||+|++..+|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~--~~~~~fD~I~~~~~l 77 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD--PFPDTYDLVFGFEVI 77 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC--CCCCCCCEeehHHHH
Confidence 369999999999999998752 012788889998898877764 34 23332 21111 346899999999999
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEEEcChH----------------HHHHHHHHHHhCCCeeE
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIFRDDVD----------------ELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~~----------------~~~~~~~~~~~l~w~~~ 592 (626)
.+..+ .+.+|.++.|+|||||++++.+... ....+.+++..-.++..
T Consensus 78 ~~~~~---~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~ 140 (224)
T smart00828 78 HHIKD---KMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVV 140 (224)
T ss_pred HhCCC---HHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEE
Confidence 88764 6899999999999999999986421 13456666766666654
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.6e-09 Score=106.13 Aligned_cols=107 Identities=24% Similarity=0.356 Sum_probs=81.9
Q ss_pred HHHhhc-cCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEccccc-CC-CCCCC
Q 006905 201 IGKLIN-LNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAER-LP-YPSRA 275 (626)
Q Consensus 201 L~~ll~-l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~-Lp-f~d~s 275 (626)
+.+++. ...+.-+++||+|||||-.+..|..+ .++++ |+|++|++.|.++++--...+.+... ++ ..+..
T Consensus 114 l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGv-----DiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er 188 (287)
T COG4976 114 LAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGV-----DISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQER 188 (287)
T ss_pred HHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCC-----chhHHHHHHHHhccchHHHHHHHHHHHhhhccCCc
Confidence 444443 23344789999999999999999886 55555 55778999999998755555555432 22 44678
Q ss_pred eeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 276 FDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 276 FDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
||+|++..++ .+....+.++.-+.+.|+|||.|.+|.
T Consensus 189 ~DLi~AaDVl-~YlG~Le~~~~~aa~~L~~gGlfaFSv 225 (287)
T COG4976 189 FDLIVAADVL-PYLGALEGLFAGAAGLLAPGGLFAFSV 225 (287)
T ss_pred ccchhhhhHH-HhhcchhhHHHHHHHhcCCCceEEEEe
Confidence 9999999998 666667999999999999999999985
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.1e-07 Score=96.07 Aligned_cols=101 Identities=19% Similarity=0.177 Sum_probs=69.7
Q ss_pred CCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEeccccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPW 288 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~ 288 (626)
+.+|||+|||+|.++..++.. .++++|+++..+..+.. .+...+..+.+...|... .+++++||+|+++....+-
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~-n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~ 114 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARL-NALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVPA 114 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHH-HHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCCC
Confidence 458999999999999888875 57888887755443332 333445555666666543 3456789999998643221
Q ss_pred ccc--------------------HHHHHHHHHhcccCCeEEEEEeC
Q 006905 289 NQF--------------------GGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 289 ~~~--------------------~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
... ...++.++.++|||||.+++...
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 115 PPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred CcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 110 24578889999999999998643
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.5e-09 Score=104.48 Aligned_cols=144 Identities=21% Similarity=0.246 Sum_probs=107.5
Q ss_pred hhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceec-cccccCC--CCCCccceeee
Q 006905 462 NQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYT-NWCEAMS--TYPRTYDLIHA 538 (626)
Q Consensus 462 ~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~-~~~e~~~--~yp~t~Dlih~ 538 (626)
..... +..|.+||+|||+|-+|-+|.+.-- .+..+|.|+|||..+.|+|+...+. .=...|. .=++-||||.+
T Consensus 119 ~~~~~-g~F~~~lDLGCGTGL~G~~lR~~a~---~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~A 194 (287)
T COG4976 119 GKADL-GPFRRMLDLGCGTGLTGEALRDMAD---RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVA 194 (287)
T ss_pred HhccC-CccceeeecccCcCcccHhHHHHHh---hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhh
Confidence 33455 6699999999999999999876632 5789999999999999999965332 1122344 23599999999
Q ss_pred ccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh----------------HHHHHHHHHHHhCCCeeEEe-----ecC
Q 006905 539 DSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV----------------DELVKVKRIIDALKWQSQIV-----DHE 597 (626)
Q Consensus 539 ~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~----------------~~~~~~~~~~~~l~w~~~~~-----~~e 597 (626)
..||.++. +++.++.=..+.|.|||.|+||... .....|...+.+--.++.-+ -.+
T Consensus 195 aDVl~YlG---~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR~d 271 (287)
T COG4976 195 ADVLPYLG---ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTTIRRD 271 (287)
T ss_pred hhHHHhhc---chhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecccchhh
Confidence 99999998 5699999999999999999998211 12456777777777776522 123
Q ss_pred CCCCCcceEEEEEec
Q 006905 598 DGPLEREKLLFAVKL 612 (626)
Q Consensus 598 ~~~~~~e~~l~~~K~ 612 (626)
.|.-.+..+.|++|+
T Consensus 272 ~g~pv~G~L~iark~ 286 (287)
T COG4976 272 AGEPVPGILVIARKK 286 (287)
T ss_pred cCCCCCCceEEEecC
Confidence 343366777788775
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.2e-08 Score=99.09 Aligned_cols=115 Identities=21% Similarity=0.271 Sum_probs=82.2
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcc-cccCCCCC
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLA-AERLPYPS 273 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d-~~~Lpf~d 273 (626)
..++-.+++.+......-|||||||+|.-+..|.+. .++++|+++.|++.++ ++-+...+..+| .+-+||..
T Consensus 36 m~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~-----~~e~egdlil~DMG~Glpfrp 110 (270)
T KOG1541|consen 36 MAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAV-----ERELEGDLILCDMGEGLPFRP 110 (270)
T ss_pred HHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHH-----HhhhhcCeeeeecCCCCCCCC
Confidence 334555666666556778999999999999998886 5677888776665444 333332344445 47899999
Q ss_pred CCeeEEEeccccccccc-------cH----HHHHHHHHhcccCCeEEEEEeCCCC
Q 006905 274 RAFDMAHCSRCLIPWNQ-------FG----GIYLIEVDRVLRPGGYWILSGPPIN 317 (626)
Q Consensus 274 ~sFDlV~~~~~l~h~~~-------~~----~~~L~Ei~RvLKPGG~lvis~pp~~ 317 (626)
++||.|++.-++ .|.- .+ ..++..++.+|++|+..++...|.+
T Consensus 111 GtFDg~ISISAv-QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen 164 (270)
T KOG1541|consen 111 GTFDGVISISAV-QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPEN 164 (270)
T ss_pred CccceEEEeeee-eeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccc
Confidence 999999986665 5531 11 3578889999999999999866553
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.77 E-value=7e-09 Score=105.53 Aligned_cols=101 Identities=9% Similarity=0.152 Sum_probs=76.7
Q ss_pred ceeEEeccCchhhHhhhhhCCCe-EEEEeccCccCcccHHHHHHh----cc---cceeccccccCCCCC-Cccceeeecc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPV-WVMNVVPAEAKINTLGVIYER----GL---VGTYTNWCEAMSTYP-RTYDLIHADS 540 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v-~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~~~~e~~~~yp-~t~Dlih~~~ 540 (626)
-.+|||+|||.|.++..|+++-. --.+|+.+|.+++|+..+.++ +. +.++ +..+..+| ..+|+|.+..
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~---~~d~~~~~~~~~d~v~~~~ 130 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEIL---CNDIRHVEIKNASMVILNF 130 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEE---ECChhhCCCCCCCEEeeec
Confidence 45799999999999998876410 013799999999999998776 21 2223 24555555 6799999988
Q ss_pred ccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh
Q 006905 541 VFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV 574 (626)
Q Consensus 541 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~ 574 (626)
++++.... +...+|.++.|+|+|||.++++|..
T Consensus 131 ~l~~~~~~-~~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 131 TLQFLPPE-DRIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred chhhCCHH-HHHHHHHHHHHhcCCCeEEEEeecc
Confidence 88876532 4578999999999999999999753
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.1e-08 Score=97.14 Aligned_cols=134 Identities=13% Similarity=0.173 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHH----hcc--cceecc
Q 006905 448 ELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYE----RGL--VGTYTN 521 (626)
Q Consensus 448 ~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~----rgl--i~~~~~ 521 (626)
..|++++-.-..++..+. -.+|||+|||+|.++..|+...- ...|+.+|.++++++++.+ .|+ +.+++.
T Consensus 25 ~~~~~~~~d~i~~~~~~~----~~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~ 99 (181)
T TIGR00138 25 EIWERHILDSLKLLEYLD----GKKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGLNNVEIVNG 99 (181)
T ss_pred HHHHHHHHHHHHHHHhcC----CCeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEec
Confidence 466766643332333332 35799999999998888764321 1368999999888876543 354 334432
Q ss_pred ccccCCCCCCccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHhCC-CeeEEe
Q 006905 522 WCEAMSTYPRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALK-WQSQIV 594 (626)
Q Consensus 522 ~~e~~~~yp~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~l~-w~~~~~ 594 (626)
-.+.+ ....+||+|.|.. + .+++.++.++.|+|||||.+++........++..+.++++ |.....
T Consensus 100 d~~~~-~~~~~fD~I~s~~-~------~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~ 165 (181)
T TIGR00138 100 RAEDF-QHEEQFDVITSRA-L------ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPL 165 (181)
T ss_pred chhhc-cccCCccEEEehh-h------hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEe
Confidence 12222 1238999999855 2 3568899999999999999999988777777777766633 444433
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.4e-09 Score=106.15 Aligned_cols=100 Identities=8% Similarity=0.148 Sum_probs=75.9
Q ss_pred eeEEeccCchhhHhhhhhC---CCeEEEEeccCccCcccHHHHHHhc----ccceeccccccCCCCC-Cccceeeecccc
Q 006905 471 RNILDMNAHLGGFAAALID---FPVWVMNVVPAEAKINTLGVIYERG----LVGTYTNWCEAMSTYP-RTYDLIHADSVF 542 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~---~~v~~mnv~~~~~~~~~l~~~~~rg----li~~~~~~~e~~~~yp-~t~Dlih~~~~f 542 (626)
.+|||+|||+|..+.+|++ .+- ..|+.+|.++.|++.+.++- +...+.-.+..+..+| ..||+|.+..++
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~--~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~l 135 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDN--CKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTL 135 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhHH
Confidence 4699999999999988875 222 27999999999999998763 2111111234555555 679999998888
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
.+... .+...++.||.|+|||||.++++|.
T Consensus 136 ~~l~~-~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 136 QFLEP-SERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HhCCH-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 87754 3457899999999999999999874
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.4e-08 Score=102.63 Aligned_cols=102 Identities=10% Similarity=0.169 Sum_probs=73.5
Q ss_pred CCCEEEEeCCCCchHHHHHhh--C----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCCCCCCCeeEEEec
Q 006905 211 SIRTAIDTGCGVASWGAYLLS--R----NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLPYPSRAFDMAHCS 282 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~--~----~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lpf~d~sFDlV~~~ 282 (626)
..++|||||||.|.+++.++. . .++++|+++..+..+........++ .+.|..+|+..++-..+.||+|+|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 457899999998855444332 2 4888888775555444333222343 3778888866654335789999999
Q ss_pred ccccccc-ccHHHHHHHHHhcccCCeEEEEEe
Q 006905 283 RCLIPWN-QFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 283 ~~l~h~~-~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
++++|. .+...+|..+.+.|+|||+|++..
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 888885 556899999999999999999975
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.6e-08 Score=102.10 Aligned_cols=99 Identities=21% Similarity=0.261 Sum_probs=72.3
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEcccccCCCCCCCeeEEEecccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAERLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~Lpf~d~sFDlV~~~~~l 285 (626)
..++||||||+|.++..++++ .++++|. +..+. ...+.+.+.+.. +.+..+|....+++. +|+|++++++
T Consensus 150 ~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~-~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~~l 225 (306)
T TIGR02716 150 VKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAID-LVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCRIL 225 (306)
T ss_pred CCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHH-HHHHHHHhCCccceEEEEecCccCCCCCC--CCEEEeEhhh
Confidence 459999999999999999886 3666665 32222 222333444543 566777766556653 6999999999
Q ss_pred ccccccH-HHHHHHHHhcccCCeEEEEEeC
Q 006905 286 IPWNQFG-GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 286 ~h~~~~~-~~~L~Ei~RvLKPGG~lvis~p 314 (626)
|+|.++. ..+|+++.++|||||.+++...
T Consensus 226 h~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 226 YSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 8887643 6799999999999999999853
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.2e-08 Score=94.79 Aligned_cols=132 Identities=18% Similarity=0.209 Sum_probs=94.0
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc-cceec-cccccCCCCCCccceeeecccccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL-VGTYT-NWCEAMSTYPRTYDLIHADSVFSL 544 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl-i~~~~-~~~e~~~~yp~t~Dlih~~~~f~~ 544 (626)
.+|||+|||+|.++..+++.+. .|+.+|.++.+++.+.++ ++ +.+++ |+.+ ..+.+||+|.++..|.+
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~---~~~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFK---GVRGKFDVILFNPPYLP 94 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccc---ccCCcccEEEECCCCCC
Confidence 4599999999999999998864 789999998998877664 22 22232 3222 23479999999877653
Q ss_pred CCC------------------CCCHHHHHHHhhhhccCCcEEEEEcChHH-HHHHHHHHHhCCCeeEEeecCCCCCCcce
Q 006905 545 YKD------------------RCETEDILLEMDRILRPEGGVIFRDDVDE-LVKVKRIIDALKWQSQIVDHEDGPLEREK 605 (626)
Q Consensus 545 ~~~------------------~c~~~~~l~E~dRiLRPgG~~i~~d~~~~-~~~~~~~~~~l~w~~~~~~~e~~~~~~e~ 605 (626)
... +..++.+|.++.|+|+|||.+++.+.... ...+.+.++...+..++.... |- +..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~-~~--~~~ 171 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAER-GL--FFE 171 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEEe-ec--Cce
Confidence 321 11256789999999999999999876554 778888888888988875433 22 233
Q ss_pred EEEEEe
Q 006905 606 LLFAVK 611 (626)
Q Consensus 606 ~l~~~K 611 (626)
-|++.|
T Consensus 172 ~~~~~~ 177 (179)
T TIGR00537 172 ELFAIK 177 (179)
T ss_pred EEEEEE
Confidence 455544
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=2e-08 Score=104.38 Aligned_cols=104 Identities=18% Similarity=0.214 Sum_probs=71.1
Q ss_pred CceeEEeccCchhhHhhhhhCCC--eEEEEeccCccCcccHHHHHHhcc-cceeccccccCCCCC-Cccceeeecccccc
Q 006905 469 RYRNILDMNAHLGGFAAALIDFP--VWVMNVVPAEAKINTLGVIYERGL-VGTYTNWCEAMSTYP-RTYDLIHADSVFSL 544 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~--v~~mnv~~~~~~~~~l~~~~~rgl-i~~~~~~~e~~~~yp-~t~Dlih~~~~f~~ 544 (626)
.-.+|||+|||.|.+++.|++.. .-..+|+++|.+++++..+.++.- +.....-.+.+ +++ .+||+|.+. |.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~l-p~~~~sfD~I~~~--~~- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRL-PFADQSLDAIIRI--YA- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccC-CCcCCceeEEEEe--cC-
Confidence 34679999999999999987641 101368999999999999988742 22222111222 344 899999873 22
Q ss_pred CCCCCCHHHHHHHhhhhccCCcEEEEEcCh-HHHHHHHHH
Q 006905 545 YKDRCETEDILLEMDRILRPEGGVIFRDDV-DELVKVKRI 583 (626)
Q Consensus 545 ~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~-~~~~~~~~~ 583 (626)
+..+.|+.|+|||||++|+.... ..+..++.+
T Consensus 161 -------~~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~ 193 (272)
T PRK11088 161 -------PCKAEELARVVKPGGIVITVTPGPRHLFELKGL 193 (272)
T ss_pred -------CCCHHHHHhhccCCCEEEEEeCCCcchHHHHHH
Confidence 23468999999999999997654 234444443
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.5e-08 Score=94.67 Aligned_cols=148 Identities=21% Similarity=0.312 Sum_probs=99.6
Q ss_pred HHHhhh-hcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceec-cc-cccCCC-CC-C
Q 006905 457 YKTMNN-QLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYT-NW-CEAMST-YP-R 531 (626)
Q Consensus 457 y~~~~~-~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~-~~-~e~~~~-yp-~ 531 (626)
|..++. .|.. .+++++|++|||.|-|.+.|+.+ +-.++.+|.++..++.+.+|-- +.-| .| ...++. .| .
T Consensus 31 ~~~~l~aaLp~-~ry~~alEvGCs~G~lT~~LA~r---Cd~LlavDis~~Al~~Ar~Rl~-~~~~V~~~~~dvp~~~P~~ 105 (201)
T PF05401_consen 31 YRATLLAALPR-RRYRRALEVGCSIGVLTERLAPR---CDRLLAVDISPRALARARERLA-GLPHVEWIQADVPEFWPEG 105 (201)
T ss_dssp HHHHHHHHHTT-SSEEEEEEE--TTSHHHHHHGGG---EEEEEEEES-HHHHHHHHHHTT-T-SSEEEEES-TTT---SS
T ss_pred HHHHHHHhcCc-cccceeEecCCCccHHHHHHHHh---hCceEEEeCCHHHHHHHHHhcC-CCCCeEEEECcCCCCCCCC
Confidence 444443 4667 89999999999999999999998 3588999999899999998764 1111 12 122333 35 9
Q ss_pred ccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcChH----------HHHHHHHHHHhCCCeeEEeecCCCCC
Q 006905 532 TYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDVD----------ELVKVKRIIDALKWQSQIVDHEDGPL 601 (626)
Q Consensus 532 t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~~----------~~~~~~~~~~~l~w~~~~~~~e~~~~ 601 (626)
+|||||++.++-++.+.-++..++..+...|+|||.+|+-.-.+ --+.|.++++..-=++.-..-..++
T Consensus 106 ~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~~~~- 184 (201)
T PF05401_consen 106 RFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVECRGGS- 184 (201)
T ss_dssp -EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEEE-SS-
T ss_pred CeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEEcCCC-
Confidence 99999999999999876677889999999999999999954322 2456667666665555544333333
Q ss_pred CcceEEEEE
Q 006905 602 EREKLLFAV 610 (626)
Q Consensus 602 ~~e~~l~~~ 610 (626)
..|.-|+++
T Consensus 185 ~~~~~~~~~ 193 (201)
T PF05401_consen 185 PNEDCLLAR 193 (201)
T ss_dssp TTSEEEEEE
T ss_pred CCCceEeee
Confidence 456666654
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-07 Score=101.39 Aligned_cols=102 Identities=17% Similarity=0.151 Sum_probs=74.8
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEcccccCCCCCCCeeEEEecccccc-
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAERLPYPSRAFDMAHCSRCLIP- 287 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h- 287 (626)
+.+|||+|||+|.++..++.. .++++|+++.++..+..+. ...+.. +.+...|+..+|+++++||+|+++..+..
T Consensus 183 g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl-~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~ 261 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINL-EHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGRS 261 (329)
T ss_pred cCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHH-HHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcCc
Confidence 458999999999887766554 6888888876666544433 333443 46677888889988889999999753311
Q ss_pred ------cc-ccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 288 ------WN-QFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 288 ------~~-~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.. .....++.++.|+|||||++++..+
T Consensus 262 ~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~ 295 (329)
T TIGR01177 262 TTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP 295 (329)
T ss_pred ccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence 01 1126799999999999999999865
|
This family is found exclusively in the Archaea. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.5e-08 Score=97.32 Aligned_cols=102 Identities=17% Similarity=0.164 Sum_probs=69.5
Q ss_pred hccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEccccc----CCCCCCCe
Q 006905 205 INLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAER----LPYPSRAF 276 (626)
Q Consensus 205 l~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~----Lpf~d~sF 276 (626)
+.+.+ +.+|||+|||+|.++..|++. .|+++|+++.++.... +.++++ .++.+..+|... .+++ ++|
T Consensus 68 l~i~~--g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~-~~a~~~-~nv~~i~~D~~~~~~~~~l~-~~~ 142 (226)
T PRK04266 68 FPIKK--GSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELL-EVAEER-KNIIPILADARKPERYAHVV-EKV 142 (226)
T ss_pred CCCCC--CCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHH-HHhhhc-CCcEEEECCCCCcchhhhcc-ccC
Confidence 44444 458999999999999999886 4899999886665332 344443 234555566543 1223 569
Q ss_pred eEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 277 DMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 277 DlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
|+|++.... +.....++.++.|+|||||.|+++.+
T Consensus 143 D~i~~d~~~---p~~~~~~L~~~~r~LKpGG~lvI~v~ 177 (226)
T PRK04266 143 DVIYQDVAQ---PNQAEIAIDNAEFFLKDGGYLLLAIK 177 (226)
T ss_pred CEEEECCCC---hhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 999875421 11224578999999999999999743
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.1e-07 Score=93.09 Aligned_cols=113 Identities=17% Similarity=0.132 Sum_probs=82.7
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceeccccccCCCCCCccceeeeccccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYTNWCEAMSTYPRTYDLIHADSVFS 543 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~~~~e~~~~yp~t~Dlih~~~~f~ 543 (626)
-.+|||+|||.|.++.++++.. --.+|+.+|.++.+++.+.++ ++ +.++.. .....++..||+|.+++..
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~--d~~~~~~~~~D~v~~~~~~- 107 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPG--EAPIELPGKADAIFIGGSG- 107 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEec--CchhhcCcCCCEEEECCCc-
Confidence 5579999999999999987652 123789999988888877653 22 222221 1122346889999986543
Q ss_pred cCCCCCCHHHHHHHhhhhccCCcEEEEEc-ChHHHHHHHHHHHhCCCee
Q 006905 544 LYKDRCETEDILLEMDRILRPEGGVIFRD-DVDELVKVKRIIDALKWQS 591 (626)
Q Consensus 544 ~~~~~c~~~~~l~E~dRiLRPgG~~i~~d-~~~~~~~~~~~~~~l~w~~ 591 (626)
..+..++.++.|+|+|||++++.+ ..+...++.++++...++.
T Consensus 108 -----~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~ 151 (187)
T PRK08287 108 -----GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSE 151 (187)
T ss_pred -----cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCc
Confidence 356789999999999999999976 4566778888888888853
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.1e-08 Score=89.88 Aligned_cols=101 Identities=24% Similarity=0.424 Sum_probs=69.6
Q ss_pred CEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCC--CCCCCeeEEEecccc
Q 006905 213 RTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLP--YPSRAFDMAHCSRCL 285 (626)
Q Consensus 213 ~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lp--f~d~sFDlV~~~~~l 285 (626)
.+|||+|||+|.++..+++. .++++|+++.....+..++. ..+. ++.+.+.|..... +++++||+|+++..+
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLP-RNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCH-HCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHH-HccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 48999999999999888865 57788886643332222222 2333 4778888866654 778999999998876
Q ss_pred ccccc-------cHHHHHHHHHhcccCCeEEEEEeC
Q 006905 286 IPWNQ-------FGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 286 ~h~~~-------~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
..... ....+++++.++|||||.+++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 53321 115789999999999999998753
|
... |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.9e-08 Score=81.75 Aligned_cols=99 Identities=24% Similarity=0.291 Sum_probs=68.4
Q ss_pred EEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCC-CCCCeeEEEecccccccc
Q 006905 214 TAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPY-PSRAFDMAHCSRCLIPWN 289 (626)
Q Consensus 214 ~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf-~d~sFDlV~~~~~l~h~~ 289 (626)
++||+|||.|.++..+++. .++++|+++...................+...+...... ..++||+|+++.+++++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 4899999999999888872 677888766433322211111112235555566555442 467899999999885535
Q ss_pred ccHHHHHHHHHhcccCCeEEEEE
Q 006905 290 QFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 290 ~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
.....++..+.+.|+|||.+++.
T Consensus 81 ~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hHHHHHHHHHHHHcCCCCEEEEE
Confidence 55588999999999999999986
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.9e-08 Score=95.18 Aligned_cols=91 Identities=25% Similarity=0.222 Sum_probs=65.0
Q ss_pred CCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEccccc-C-CCCCCCeeEEEeccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAER-L-PYPSRAFDMAHCSRCLI 286 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~-L-pf~d~sFDlV~~~~~l~ 286 (626)
+.+|||+|||+|.++..+++. .++++|++ +.+++.+..+++ .+...+... + ++++++||+|+|+.+++
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s-----~~~i~~a~~~~~--~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~ 86 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEKQVRGYGIEID-----QDGVLACVARGV--NVIQGDLDEGLEAFPDKSFDYVILSQTLQ 86 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhccCCcEEEEeCC-----HHHHHHHHHcCC--eEEEEEhhhcccccCCCCcCEEEEhhHhH
Confidence 348999999999999988764 34566664 455566666664 344556543 4 47788999999999996
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 287 PWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 287 h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
|.. ++..+++++.|++++ .+++.
T Consensus 87 ~~~-d~~~~l~e~~r~~~~---~ii~~ 109 (194)
T TIGR02081 87 ATR-NPEEILDEMLRVGRH---AIVSF 109 (194)
T ss_pred cCc-CHHHHHHHHHHhCCe---EEEEc
Confidence 654 468899999887664 44543
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.5e-07 Score=98.33 Aligned_cols=97 Identities=13% Similarity=0.120 Sum_probs=69.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEccccc---CCCCCCCeeEEEec
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAER---LPYPSRAFDMAHCS 282 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~---Lpf~d~sFDlV~~~ 282 (626)
++.+|||+|||+|.++.++++. .|+++|+++.+ .+.+++.+.++ .++...+.|+.. +.....+||+|++.
T Consensus 132 pG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~-~~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 132 PGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRS-GRDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred CCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHH-HHHHHHHhhhc-CCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 3459999999999999999986 49999998632 23455565544 344555666532 22234589999997
Q ss_pred cccccccccHHHHHHHHHhcccCCeEEEEE
Q 006905 283 RCLIPWNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 283 ~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
.+. +++...++.++.++|||||+|+|.
T Consensus 210 va~---pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 210 VAQ---PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CCC---cchHHHHHHHHHHhccCCCEEEEE
Confidence 742 333356778999999999999996
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.2e-08 Score=98.08 Aligned_cols=102 Identities=25% Similarity=0.287 Sum_probs=75.3
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh--cccceeccccccCCC--CC-Cccceeeecccc
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER--GLVGTYTNWCEAMST--YP-RTYDLIHADSVF 542 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r--gli~~~~~~~e~~~~--yp-~t~Dlih~~~~f 542 (626)
..-.+|||+|||.|.++..+++.---.-+|+.+|.++.+++.+.++ +.....+-....+.. ++ .+||+||+..+|
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~ 97 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVL 97 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEechh
Confidence 3356899999999999999987520112789999998999999887 211111111122222 34 899999999999
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
.+.. +.+.+|.++.++|||||++++.+
T Consensus 98 ~~~~---~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 98 QHLE---DPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred hccC---CHHHHHHHHHHHhcCCcEEEEEe
Confidence 8876 46889999999999999999865
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.4e-09 Score=90.87 Aligned_cols=91 Identities=21% Similarity=0.254 Sum_probs=56.5
Q ss_pred EeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc------cceecccc-ccCCCCC-CccceeeeccccccC
Q 006905 474 LDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL------VGTYTNWC-EAMSTYP-RTYDLIHADSVFSLY 545 (626)
Q Consensus 474 lD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl------i~~~~~~~-e~~~~yp-~t~Dlih~~~~f~~~ 545 (626)
||+|||+|.++..|+++- ....++.+|.++.+++.+.+|-- .....--. +.+...+ ++||+|.+..+|++.
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 799999999999998873 34589999999999954444422 01111111 1222233 599999999999999
Q ss_pred CCCCCHHHHHHHhhhhccCCcEE
Q 006905 546 KDRCETEDILLEMDRILRPEGGV 568 (626)
Q Consensus 546 ~~~c~~~~~l~E~dRiLRPgG~~ 568 (626)
. +++.+|..+.++|||||.+
T Consensus 80 ~---~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 E---DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S----HHHHHHHHTTT-TSS-EE
T ss_pred h---hHHHHHHHHHHHcCCCCCC
Confidence 3 7799999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.1e-07 Score=100.33 Aligned_cols=103 Identities=13% Similarity=0.127 Sum_probs=69.5
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHc-CCCeEEEEccccc-CCCCCC----CeeEEE
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALER-GVPALIGVLAAER-LPYPSR----AFDMAH 280 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~er-g~~~~~~v~d~~~-Lpf~d~----sFDlV~ 280 (626)
+.+|||+|||+|..+..|+++ .++++|+++.++..++.+..... ++.+....+|... ++++.. ...+++
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFF 143 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEE
Confidence 458999999999998888765 57888887766665555444322 3455556677554 444332 233444
Q ss_pred ecccccccccc-HHHHHHHHHhcccCCeEEEEEeC
Q 006905 281 CSRCLIPWNQF-GGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 281 ~~~~l~h~~~~-~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+..++.++..+ ...+|+++.++|+|||.|+|...
T Consensus 144 ~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 144 PGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred ecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 44555455432 26799999999999999999753
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.8e-07 Score=92.63 Aligned_cols=150 Identities=13% Similarity=0.166 Sum_probs=95.8
Q ss_pred cCCChhhchh--hhHHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh
Q 006905 436 KGITPEIFQQ--NSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER 513 (626)
Q Consensus 436 ~~~~~~~f~~--d~~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r 513 (626)
+|+..+.|.. +...|+..+.. -.+..+.. ..-.+|||+|||.|.++..++..--...+|+.+|.++.+++.+.++
T Consensus 8 ~~~~d~~~~~~~~~~~t~~~~r~--~~l~~l~~-~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n 84 (198)
T PRK00377 8 PGIPDEEFERDEEIPMTKEEIRA--LALSKLRL-RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRN 84 (198)
T ss_pred CCCChHHHccCCCCCCCHHHHHH--HHHHHcCC-CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence 3555566665 33567666642 12233333 3345799999999999987754310113689999998899876554
Q ss_pred ----cc---cceec-cccccCCCCCCccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEE-cChHHHHHHHHHH
Q 006905 514 ----GL---VGTYT-NWCEAMSTYPRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFR-DDVDELVKVKRII 584 (626)
Q Consensus 514 ----gl---i~~~~-~~~e~~~~yp~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~-d~~~~~~~~~~~~ 584 (626)
|+ +.+.. |..+.+..++..||+|.+.. ...++..+|.++.|+|||||.+++. -..+.+.++...+
T Consensus 85 ~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~------~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l 158 (198)
T PRK00377 85 AEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG------GSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSAL 158 (198)
T ss_pred HHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC------CcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHH
Confidence 32 12222 22222222346899988743 1236788999999999999999983 3456677888888
Q ss_pred HhCCCeeEEe
Q 006905 585 DALKWQSQIV 594 (626)
Q Consensus 585 ~~l~w~~~~~ 594 (626)
+.+.++..+.
T Consensus 159 ~~~g~~~~~~ 168 (198)
T PRK00377 159 ENIGFNLEIT 168 (198)
T ss_pred HHcCCCeEEE
Confidence 8777765533
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.4e-08 Score=96.53 Aligned_cols=99 Identities=18% Similarity=0.240 Sum_probs=74.7
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc--cceeccccccCCCCCCccceeeeccccccCCC
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL--VGTYTNWCEAMSTYPRTYDLIHADSVFSLYKD 547 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl--i~~~~~~~e~~~~yp~t~Dlih~~~~f~~~~~ 547 (626)
-.+|||+|||.|.++..|++... ...++.+|.++.++..+.++.- +..+..=.+.+...+.+||+|.+..++.+..
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~- 112 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCD- 112 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhcc-
Confidence 36799999999999999988642 2257889999889888887753 2222211222332338999999999888765
Q ss_pred CCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 548 RCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 548 ~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
+...+|.++.|+|+|||.+++..
T Consensus 113 --~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 113 --DLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred --CHHHHHHHHHHHcCCCcEEEEEe
Confidence 56889999999999999999975
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.8e-08 Score=100.08 Aligned_cols=96 Identities=22% Similarity=0.277 Sum_probs=80.7
Q ss_pred CCEEEEeCCCCchHHHHHhhCC---cEEEeCCccchHHHHHHHHHH---cCCCeEEEEcccccCCCCCCCeeEEEecccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSRN---IITMSFAPRDTHEAQVQFALE---RGVPALIGVLAAERLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~~---V~avdis~~dls~a~i~~A~e---rg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l 285 (626)
...++|||||.|.+...|..++ ++-+|.+. .+++.++. .++.....+.|.+.|+|.+++||+|+++..+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~-----~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlsl 147 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSY-----DMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSL 147 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecch-----HHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhh
Confidence 4579999999999999999984 55666644 45555543 4555677888999999999999999999999
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 286 IPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 286 ~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
||.++....+.++...|||+|.|+-+.
T Consensus 148 -HW~NdLPg~m~~ck~~lKPDg~Fiasm 174 (325)
T KOG2940|consen 148 -HWTNDLPGSMIQCKLALKPDGLFIASM 174 (325)
T ss_pred -hhhccCchHHHHHHHhcCCCccchhHH
Confidence 999999999999999999999998874
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.9e-07 Score=89.19 Aligned_cols=101 Identities=18% Similarity=0.244 Sum_probs=69.0
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCC---eEEEEcccccCCCCCCCeeEEEeccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVP---ALIGVLAAERLPYPSRAFDMAHCSRCLI 286 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~---~~~~v~d~~~Lpf~d~sFDlV~~~~~l~ 286 (626)
+.+|||+|||+|.++..++.+ .++++|+++..+..++.+ ....+.. +.+...|... ++.+++||+|+++..+.
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~-~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~~ 101 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCN-AKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPYL 101 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHH-HHHcCCCCcceEEEeccccc-cccccCceEEEECCCcC
Confidence 458999999999999998876 778888877544433322 2233332 5555556433 34556899999976553
Q ss_pred ccc--------------------ccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 287 PWN--------------------QFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 287 h~~--------------------~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+.. .....+++++.++|||||.+++..+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 102 PTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred CCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 311 0124579999999999999988754
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.2e-06 Score=88.76 Aligned_cols=131 Identities=15% Similarity=0.163 Sum_probs=86.3
Q ss_pred eEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHH----hcccceeccccccCCCCCCccceeeeccccccCCC
Q 006905 472 NILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYE----RGLVGTYTNWCEAMSTYPRTYDLIHADSVFSLYKD 547 (626)
Q Consensus 472 ~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~----rgli~~~~~~~e~~~~yp~t~Dlih~~~~f~~~~~ 547 (626)
.|||+|||.|.++.+++++.- ...|+.+|.+..++..+.+ .|+-+.++ +...++..++.||+|.|+-.|.....
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g~~ 276 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDGIQ 276 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCCcc
Confidence 599999999999999987621 1268889999888887654 33322221 23334444689999999988874322
Q ss_pred --CCCHHHHHHHhhhhccCCcEEEEEcCh--HHHHHHHHHHHhCCCeeEEeecCCCCCCcceEEEEEec
Q 006905 548 --RCETEDILLEMDRILRPEGGVIFRDDV--DELVKVKRIIDALKWQSQIVDHEDGPLEREKLLFAVKL 612 (626)
Q Consensus 548 --~c~~~~~l~E~dRiLRPgG~~i~~d~~--~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K~ 612 (626)
....+.++.++.|.|||||.++|--.. ..-..+++..... + +.. ++ .+-||+-++|.
T Consensus 277 ~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~Fg~~--~--~la-~~---~~f~v~~a~~~ 337 (342)
T PRK09489 277 TSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDETFGSH--E--VLA-QT---GRFKVYRAIMT 337 (342)
T ss_pred ccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHHcCCe--E--EEE-eC---CCEEEEEEEcc
Confidence 123468999999999999999886432 2344555554432 2 221 11 35678877763
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.5e-08 Score=96.83 Aligned_cols=123 Identities=18% Similarity=0.144 Sum_probs=87.3
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceec-cccccCCC-CC-Cccceeeecc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYT-NWCEAMST-YP-RTYDLIHADS 540 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~-~~~e~~~~-yp-~t~Dlih~~~ 540 (626)
-.+|||+|||+|.++..|++.. --.+|+.+|.++.+++.+.++ ++ +.+++ |+.+.+.. ++ .+||+|.+..
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 4689999999999999997752 113799999999999988764 33 23333 32234432 54 8999998754
Q ss_pred ccc-----cCCCCCCHHHHHHHhhhhccCCcEEEEE-cChHHHHHHHHHHHhCCCeeEE
Q 006905 541 VFS-----LYKDRCETEDILLEMDRILRPEGGVIFR-DDVDELVKVKRIIDALKWQSQI 593 (626)
Q Consensus 541 ~f~-----~~~~~c~~~~~l~E~dRiLRPgG~~i~~-d~~~~~~~~~~~~~~l~w~~~~ 593 (626)
... +...+...+.+|.++.|+|||||.|+|. +.......+.+.+..-.|.+.+
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~ 178 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLVS 178 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcccccc
Confidence 322 1122234578999999999999999996 5666777777777777787663
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.3e-08 Score=93.48 Aligned_cols=98 Identities=19% Similarity=0.398 Sum_probs=75.5
Q ss_pred ceeEEeccCchhhHhhhhhC-C--CeEEEEeccCccCcccHHHHHHh----cc--cceec-cccccCCC-CCCccceeee
Q 006905 470 YRNILDMNAHLGGFAAALID-F--PVWVMNVVPAEAKINTLGVIYER----GL--VGTYT-NWCEAMST-YPRTYDLIHA 538 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~-~--~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~-~~~e~~~~-yp~t~Dlih~ 538 (626)
--+|||+|||+|.++..|++ . +. +++.+|.++.+++.+.++ |+ +-.++ |+-+ +.. |+..||+|.+
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~---~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~ 79 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGA---KIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIIS 79 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTS---EEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEE
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCC---EEEEEECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEE
Confidence 45799999999999999994 2 44 689999999999998884 44 33444 2222 221 4479999999
Q ss_pred ccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh
Q 006905 539 DSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV 574 (626)
Q Consensus 539 ~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~ 574 (626)
..++.+.. +...+|.+|-|+|+|||.+++++..
T Consensus 80 ~~~l~~~~---~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 80 NGVLHHFP---DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp ESTGGGTS---HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cCchhhcc---CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 99885554 5578999999999999999999876
|
... |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.3e-07 Score=92.69 Aligned_cols=108 Identities=13% Similarity=0.087 Sum_probs=69.9
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCCCCC
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLPYPS 273 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lpf~d 273 (626)
....+.+.+...+ ..+|||+|||+|.++..|++. .++++|+++..+..+..++ ...+. .+.+...|........
T Consensus 66 ~~~~l~~~l~~~~--~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~-~~~~~~~v~~~~~d~~~~~~~~ 142 (212)
T PRK00312 66 MVARMTELLELKP--GDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRL-KQLGLHNVSVRHGDGWKGWPAY 142 (212)
T ss_pred HHHHHHHhcCCCC--CCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHH-HHCCCCceEEEECCcccCCCcC
Confidence 3344555554433 458999999999998877765 6788888764443333222 23344 3556666643322234
Q ss_pred CCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 274 RAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 274 ~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++||+|++..++.+ +..++.+.|+|||.+++...
T Consensus 143 ~~fD~I~~~~~~~~-------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 143 APFDRILVTAAAPE-------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCcCEEEEccCchh-------hhHHHHHhcCCCcEEEEEEc
Confidence 78999999876533 24567899999999999754
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.65 E-value=3e-07 Score=93.11 Aligned_cols=103 Identities=17% Similarity=0.066 Sum_probs=77.6
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHH------------HHHcCCCeEEEEcccccCCCC---CC
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQF------------ALERGVPALIGVLAAERLPYP---SR 274 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~------------A~erg~~~~~~v~d~~~Lpf~---d~ 274 (626)
+.+||+.|||.|.-+.+|+++ .|+++|+++..+.....+. ...++..+.+.++|...++.. .+
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~ 123 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLP 123 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccccC
Confidence 458999999999999999998 5777777664443322210 012345678888998888632 26
Q ss_pred CeeEEEeccccccccccH-HHHHHHHHhcccCCeEEEEEeC
Q 006905 275 AFDMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 275 sFDlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.||+|+-..++++++.+. ..+.+.+.++|+|||.+++...
T Consensus 124 ~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 124 VFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred CcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 899999888888887665 7899999999999999998754
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.4e-08 Score=100.43 Aligned_cols=130 Identities=16% Similarity=0.207 Sum_probs=88.0
Q ss_pred hhchhhhHHHHHHHHHHHHhh-hhcCCCCCceeEEeccCchhh----HhhhhhCCC----eEEEEeccCccCcccHHHHH
Q 006905 441 EIFQQNSELWKKRLSYYKTMN-NQLGQSGRYRNILDMNAHLGG----FAAALIDFP----VWVMNVVPAEAKINTLGVIY 511 (626)
Q Consensus 441 ~~f~~d~~~w~~~v~~y~~~~-~~~~~~~~~r~vlD~g~g~G~----faa~l~~~~----v~~mnv~~~~~~~~~l~~~~ 511 (626)
..|-.|...|..-.+.....+ ..... +...+|+|+|||+|- .|..|++.. -|...|+++|.++.+|+.|.
T Consensus 71 T~FfR~~~~~~~l~~~vlp~l~~~~~~-~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar 149 (264)
T smart00138 71 TRFFRESKHFEALEEKVLPLLIASRRH-GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKAR 149 (264)
T ss_pred CcccCCcHHHHHHHHHHhHHHHHhcCC-CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHH
Confidence 347777788887555433322 21122 334689999999994 566665431 24568999999999999887
Q ss_pred Hhc--------c-------------------------cc-eeccccccCCCCC-CccceeeeccccccCCCCCCHHHHHH
Q 006905 512 ERG--------L-------------------------VG-TYTNWCEAMSTYP-RTYDLIHADSVFSLYKDRCETEDILL 556 (626)
Q Consensus 512 ~rg--------l-------------------------i~-~~~~~~e~~~~yp-~t~Dlih~~~~f~~~~~~c~~~~~l~ 556 (626)
+.- + +. ..||..+ ..+| +.||+|.|..+|.+... -....++.
T Consensus 150 ~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~--~~~~~~~fD~I~crnvl~yf~~-~~~~~~l~ 226 (264)
T smart00138 150 AGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLA--ESPPLGDFDLIFCRNVLIYFDE-PTQRKLLN 226 (264)
T ss_pred cCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCC--CCCccCCCCEEEechhHHhCCH-HHHHHHHH
Confidence 531 1 01 1223222 1234 89999999999988753 24568999
Q ss_pred HhhhhccCCcEEEEEcCh
Q 006905 557 EMDRILRPEGGVIFRDDV 574 (626)
Q Consensus 557 E~dRiLRPgG~~i~~d~~ 574 (626)
++.|+|+|||++++....
T Consensus 227 ~l~~~L~pGG~L~lg~~E 244 (264)
T smart00138 227 RFAEALKPGGYLFLGHSE 244 (264)
T ss_pred HHHHHhCCCeEEEEECcc
Confidence 999999999999997654
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.8e-07 Score=94.11 Aligned_cols=125 Identities=18% Similarity=0.219 Sum_probs=83.4
Q ss_pred CCCCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcC-CCeEEE
Q 006905 188 TMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERG-VPALIG 262 (626)
Q Consensus 188 t~F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg-~~~~~~ 262 (626)
..|.-+.+.. .|..+..... ..+|||+|||+|..+..++++ .++++++.+.+...++.+.+...- ..+.+.
T Consensus 25 ~~~~~~~Dai--LL~~~~~~~~--~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~ 100 (248)
T COG4123 25 CGFRYGTDAI--LLAAFAPVPK--KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVI 100 (248)
T ss_pred CccccccHHH--HHHhhccccc--CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEe
Confidence 3455556655 3555655443 568999999999999999987 578888876555544444443111 135566
Q ss_pred EcccccCC--CCCCCeeEEEecccccccccc-----------------HHHHHHHHHhcccCCeEEEEEeCCC
Q 006905 263 VLAAERLP--YPSRAFDMAHCSRCLIPWNQF-----------------GGIYLIEVDRVLRPGGYWILSGPPI 316 (626)
Q Consensus 263 v~d~~~Lp--f~d~sFDlV~~~~~l~h~~~~-----------------~~~~L~Ei~RvLKPGG~lvis~pp~ 316 (626)
..|...+. ....+||+|+||.-+..-... .+.+++...++|||||++.+..+|.
T Consensus 101 ~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e 173 (248)
T COG4123 101 EADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE 173 (248)
T ss_pred hhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH
Confidence 66765553 334579999998765322222 2467888999999999999996643
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.8e-08 Score=98.51 Aligned_cols=96 Identities=17% Similarity=0.276 Sum_probs=78.5
Q ss_pred eEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceec-cc----cccCCCCCCccceeeeccccccCC
Q 006905 472 NILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYT-NW----CEAMSTYPRTYDLIHADSVFSLYK 546 (626)
Q Consensus 472 ~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~-~~----~e~~~~yp~t~Dlih~~~~f~~~~ 546 (626)
.|||+|||-|.++..|+..|. +|+++|.++.+++++..+.+.+.+. ++ -|.+..--.+||+|-|..|+.|..
T Consensus 62 ~vLDvGCGgG~Lse~mAr~Ga---~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~ 138 (243)
T COG2227 62 RVLDVGCGGGILSEPLARLGA---SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP 138 (243)
T ss_pred eEEEecCCccHhhHHHHHCCC---eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccC
Confidence 599999999999999999996 9999999999999999777744333 22 111111116999999999999988
Q ss_pred CCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 547 DRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 547 ~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
+ .+.++.+..+.|||||.++++..
T Consensus 139 d---p~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 139 D---PESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred C---HHHHHHHHHHHcCCCcEEEEecc
Confidence 4 57899999999999999999854
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.6e-07 Score=93.13 Aligned_cols=122 Identities=16% Similarity=0.212 Sum_probs=71.5
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeE
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDM 278 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDl 278 (626)
.+.+.+... .....|-|+|||.+.++..+.+. .|...|+... +. .+..+|...+|.++++.|+
T Consensus 62 ~iI~~l~~~-~~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~-------------n~--~Vtacdia~vPL~~~svDv 125 (219)
T PF05148_consen 62 VIIEWLKKR-PKSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAP-------------NP--RVTACDIANVPLEDESVDV 125 (219)
T ss_dssp HHHHHHCTS--TTS-EEEES-TT-HHHHH--S---EEEEESS-S-------------ST--TEEES-TTS-S--TT-EEE
T ss_pred HHHHHHHhc-CCCEEEEECCCchHHHHHhcccCceEEEeeccCC-------------CC--CEEEecCccCcCCCCceeE
Confidence 344444422 22458999999999999877643 5666666331 11 2456789999999999999
Q ss_pred EEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCCCcccccccccchhhhhHHHHHHHHHHHHhhchhhhccc
Q 006905 279 AHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPPINWKKHARGWQRTKEDLNKEQTAIENVAKSLCWEKIKEK 354 (626)
Q Consensus 279 V~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~pp~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v~~~ 354 (626)
|++..+| +..+...++.|+.|+|||||.|+|..-.. ++ + ....+.+..++++++...+.
T Consensus 126 ~VfcLSL--MGTn~~~fi~EA~RvLK~~G~L~IAEV~S----Rf-------~----~~~~F~~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 126 AVFCLSL--MGTNWPDFIREANRVLKPGGILKIAEVKS----RF-------E----NVKQFIKALKKLGFKLKSKD 184 (219)
T ss_dssp EEEES-----SS-HHHHHHHHHHHEEEEEEEEEEEEGG----G--------S-----HHHHHHHHHCTTEEEEEEE
T ss_pred EEEEhhh--hCCCcHHHHHHHHheeccCcEEEEEEecc----cC-------c----CHHHHHHHHHHCCCeEEecc
Confidence 9998887 44556899999999999999999985311 11 0 12334455678888776643
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.1e-07 Score=96.22 Aligned_cols=122 Identities=18% Similarity=0.197 Sum_probs=86.6
Q ss_pred hcCCCCCceeEEeccCchhhHhhhhhCCCeEE------EEeccCccCcccHHHHHHhcccc---------eeccccccCC
Q 006905 463 QLGQSGRYRNILDMNAHLGGFAAALIDFPVWV------MNVVPAEAKINTLGVIYERGLVG---------TYTNWCEAMS 527 (626)
Q Consensus 463 ~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~------mnv~~~~~~~~~l~~~~~rgli~---------~~~~~~e~~~ 527 (626)
.|++ +.--+||||+||+|-.|..+.+. |-. -+|+-.|.+++||.+..+|..-+ ..-.-.|.++
T Consensus 95 ~L~p-~~~m~~lDvaGGTGDiaFril~~-v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp 172 (296)
T KOG1540|consen 95 KLGP-GKGMKVLDVAGGTGDIAFRILRH-VKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP 172 (296)
T ss_pred ccCC-CCCCeEEEecCCcchhHHHHHHh-hccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC
Confidence 3566 56688999999999998888765 222 47788888899999988887311 1111246666
Q ss_pred CCC-CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcChHHH-HHHHHHHHhCCCe
Q 006905 528 TYP-RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDVDEL-VKVKRIIDALKWQ 590 (626)
Q Consensus 528 ~yp-~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~~~~-~~~~~~~~~l~w~ 590 (626)
|| .+||+.....-.-... +++.+|.|+.|||||||.|.+-+=..+. ..|+.+.+.---+
T Consensus 173 -Fdd~s~D~yTiafGIRN~t---h~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~ 233 (296)
T KOG1540|consen 173 -FDDDSFDAYTIAFGIRNVT---HIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFD 233 (296)
T ss_pred -CCCCcceeEEEecceecCC---CHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhh
Confidence 78 9999988743333444 5699999999999999999987655443 4555555544333
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.2e-07 Score=89.64 Aligned_cols=100 Identities=19% Similarity=0.273 Sum_probs=71.7
Q ss_pred EEEEeCCCCchHHHHHhhCC----cEEEeCCccchHHHHHHHHHHcCCC--eEEEEcccccCCCCCCCeeEEEeccc---
Q 006905 214 TAIDTGCGVASWGAYLLSRN----IITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAERLPYPSRAFDMAHCSRC--- 284 (626)
Q Consensus 214 ~VLDIGCGtG~~a~~La~~~----V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~Lpf~d~sFDlV~~~~~--- 284 (626)
+|||+|||+|.+...|++.+ .+++|.++..+.- +.+.|+.++.+ +.|.+.|...-.+..+.||+|+--..
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~L-A~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVEL-AQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHH-HHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 89999999999999999973 5666666543322 33345566666 78888887666777888999985322
Q ss_pred --ccccc--ccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 285 --LIPWN--QFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 285 --l~h~~--~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
|++-. ..+..++..+.++|+|||.|+|..-
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC 182 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC 182 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCCCcEEEEEec
Confidence 22111 1124688999999999999999853
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=98.62 E-value=1e-07 Score=100.09 Aligned_cols=115 Identities=12% Similarity=0.151 Sum_probs=82.6
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccc----eeccccccCCCC-CCccceeeeccccccC
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVG----TYTNWCEAMSTY-PRTYDLIHADSVFSLY 545 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~----~~~~~~e~~~~y-p~t~Dlih~~~~f~~~ 545 (626)
.+|||+|||+|.++.++++.+. -+|+.+|.++.+++.+.++.-.. .....+...... +..||+|+|+.+..
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~-- 236 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE-- 236 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH--
Confidence 6799999999999988887764 37899999999999887764311 111112223333 37999999965432
Q ss_pred CCCCCHHHHHHHhhhhccCCcEEEEEcCh-HHHHHHHHHHHhCCCeeEEe
Q 006905 546 KDRCETEDILLEMDRILRPEGGVIFRDDV-DELVKVKRIIDALKWQSQIV 594 (626)
Q Consensus 546 ~~~c~~~~~l~E~dRiLRPgG~~i~~d~~-~~~~~~~~~~~~l~w~~~~~ 594 (626)
.+..++.++.|+|||||+++++.-. +....+.+.+++. |+...+
T Consensus 237 ----~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 237 ----VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred ----HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-CceeeE
Confidence 3467899999999999999998654 3456677766665 766543
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.7e-07 Score=90.85 Aligned_cols=136 Identities=18% Similarity=0.248 Sum_probs=91.8
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc----cc-eeccccccCCCCC-Cccceeeec
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL----VG-TYTNWCEAMSTYP-RTYDLIHAD 539 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl----i~-~~~~~~e~~~~yp-~t~Dlih~~ 539 (626)
..+|||+|||.|.++..|++++. +|+.+|.+++++..+.++ ++ +. ..+|+.+ .++ .+||+|-++
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~d~vi~n 97 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNGK---KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE---PFRGDKFDVILFN 97 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhcc---eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc---cccccCceEEEEC
Confidence 45799999999999999998864 899999998898887443 22 22 2234433 344 589999876
Q ss_pred cccccCC------------------CCCCHHHHHHHhhhhccCCcEEEEEcC-hHHHHHHHHHHHhCCCeeEEeecCCCC
Q 006905 540 SVFSLYK------------------DRCETEDILLEMDRILRPEGGVIFRDD-VDELVKVKRIIDALKWQSQIVDHEDGP 600 (626)
Q Consensus 540 ~~f~~~~------------------~~c~~~~~l~E~dRiLRPgG~~i~~d~-~~~~~~~~~~~~~l~w~~~~~~~e~~~ 600 (626)
..|.... ....++.++.++.|+|||||.+++-.. ......+.+.+....|++.....+.-.
T Consensus 98 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 177 (188)
T PRK14968 98 PPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVAEEKFP 177 (188)
T ss_pred CCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeeeecccC
Confidence 6553311 012256789999999999999887543 234567888888888887654333333
Q ss_pred CCcceEEEEEe
Q 006905 601 LEREKLLFAVK 611 (626)
Q Consensus 601 ~~~e~~l~~~K 611 (626)
++.-.+++.+|
T Consensus 178 ~~~~~~~~~~~ 188 (188)
T PRK14968 178 FEELIVLELVK 188 (188)
T ss_pred CceEEEEEEeC
Confidence 33334454443
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.1e-07 Score=90.99 Aligned_cols=98 Identities=14% Similarity=0.086 Sum_probs=68.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEccccc-CCCCCCCeeEEEec
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAER-LPYPSRAFDMAHCS 282 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~-Lpf~d~sFDlV~~~ 282 (626)
.+.+|||+|||+|.++..++.. .++++|+++.++..++. .+...++ .+.+...|... ++..++.||+|++.
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~-n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~ 118 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRR-NAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIG 118 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEEC
Confidence 4558999999999998876542 58899998755543332 3334442 35555556544 33334689999985
Q ss_pred cccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 283 RCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 283 ~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
... .....++.++.++|||||++++..
T Consensus 119 ~~~----~~~~~~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 119 GGS----EKLKEIISASWEIIKKGGRIVIDA 145 (198)
T ss_pred CCc----ccHHHHHHHHHHHcCCCcEEEEEe
Confidence 422 235789999999999999999864
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1e-07 Score=98.91 Aligned_cols=112 Identities=18% Similarity=0.267 Sum_probs=84.4
Q ss_pred HHHHHHHhhhh--cCCCCCceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHH----HHhcccceecccccc
Q 006905 453 RLSYYKTMNNQ--LGQSGRYRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVI----YERGLVGTYTNWCEA 525 (626)
Q Consensus 453 ~v~~y~~~~~~--~~~~~~~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~----~~rgli~~~~~~~e~ 525 (626)
+...+..++.. |.+ --+|||+|||-|+++.+++++ +| ||++++.|++++..+ .++|+..-.+---..
T Consensus 57 Q~~k~~~~~~kl~L~~---G~~lLDiGCGWG~l~~~aA~~y~v---~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d 130 (283)
T COG2230 57 QRAKLDLILEKLGLKP---GMTLLDIGCGWGGLAIYAAEEYGV---TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQD 130 (283)
T ss_pred HHHHHHHHHHhcCCCC---CCEEEEeCCChhHHHHHHHHHcCC---EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecc
Confidence 33334344433 555 456999999999999999987 77 999999999998865 557774322211123
Q ss_pred CCCCCCccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 526 MSTYPRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 526 ~~~yp~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
..+++..||=|.+.++|.|.... +.++.+.-++++|+|||.+++-
T Consensus 131 ~rd~~e~fDrIvSvgmfEhvg~~-~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 131 YRDFEEPFDRIVSVGMFEHVGKE-NYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred ccccccccceeeehhhHHHhCcc-cHHHHHHHHHhhcCCCceEEEE
Confidence 34455669999999999998874 7899999999999999999884
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.4e-07 Score=95.21 Aligned_cols=126 Identities=16% Similarity=0.175 Sum_probs=88.0
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceeccccccCCCCC---CccceeeeccccccCC
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYP---RTYDLIHADSVFSLYK 546 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~yp---~t~Dlih~~~~f~~~~ 546 (626)
-.+|||+|||+|..+.++++.+.- .|+.+|.++.+++.+.++.-...+. ..+ ..+ .+||+|.|+...
T Consensus 120 ~~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~~---~~~-~~~~~~~~fD~Vvani~~---- 189 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGVE---LNV-YLPQGDLKADVIVANILA---- 189 (250)
T ss_pred CCEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCC---ceE-EEccCCCCcCEEEEcCcH----
Confidence 457999999999999988887652 4899999999999887764211111 111 112 279999985332
Q ss_pred CCCCHHHHHHHhhhhccCCcEEEEEcCh-HHHHHHHHHHHhCCCeeEEeecCCCCCCcceEEEEEe
Q 006905 547 DRCETEDILLEMDRILRPEGGVIFRDDV-DELVKVKRIIDALKWQSQIVDHEDGPLEREKLLFAVK 611 (626)
Q Consensus 547 ~~c~~~~~l~E~dRiLRPgG~~i~~d~~-~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K 611 (626)
-.+..++.++.|+|||||++|+++.. +....+...++...++......+ +.-..++++|
T Consensus 190 --~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~----~~W~~~~~~~ 249 (250)
T PRK00517 190 --NPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLER----GEWVALVGKK 249 (250)
T ss_pred --HHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEEe----CCEEEEEEEe
Confidence 12457889999999999999999754 45677888888888887654333 2344556655
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.1e-07 Score=97.09 Aligned_cols=101 Identities=15% Similarity=0.129 Sum_probs=69.6
Q ss_pred CEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCC-CCCeeEEEecccccc
Q 006905 213 RTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYP-SRAFDMAHCSRCLIP 287 (626)
Q Consensus 213 ~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~-d~sFDlV~~~~~l~h 287 (626)
.+|||+|||+|.++..++.. .++++|+++.++..++.+ +...+..+.+..+|.....++ .++||+|+|+...+.
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreN-a~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKN-AADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence 48999999999999888753 588999988666544433 334456677777775443332 457999999875432
Q ss_pred ccc--------------------cH----HHHHHHHHhcccCCeEEEEEeC
Q 006905 288 WNQ--------------------FG----GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 288 ~~~--------------------~~----~~~L~Ei~RvLKPGG~lvis~p 314 (626)
-.+ +. ..++.++.+.|+|||.+++...
T Consensus 332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG 382 (423)
T PRK14966 332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG 382 (423)
T ss_pred cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 110 00 2566777889999999998753
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=9.1e-07 Score=91.46 Aligned_cols=101 Identities=20% Similarity=0.247 Sum_probs=66.5
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIP 287 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h 287 (626)
..+|||+|||+|.++..++.. .++++|+++..+..+..+........+.+...|... ++++++||+|+++.....
T Consensus 109 ~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy~~ 187 (275)
T PRK09328 109 PLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPYIP 187 (275)
T ss_pred CCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCcCC
Confidence 458999999999999988875 578888877544433333221112245666666432 233578999999754321
Q ss_pred cc-------------------------ccHHHHHHHHHhcccCCeEEEEEe
Q 006905 288 WN-------------------------QFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 288 ~~-------------------------~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
.. .....++.++.++|+|||++++..
T Consensus 188 ~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 188 EADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred cchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 10 001457788889999999999964
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.58 E-value=5e-07 Score=88.65 Aligned_cols=91 Identities=14% Similarity=0.183 Sum_probs=63.3
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCC--------CCCCCeeE
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLP--------YPSRAFDM 278 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lp--------f~d~sFDl 278 (626)
+.+|||+|||+|.++..++++ .++++|+++.. ....+.+...|....+ +++++||+
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~ 101 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDV 101 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCCCccE
Confidence 458999999999998877664 38899997732 1122445555654432 45678999
Q ss_pred EEeccccc---cccc-------cHHHHHHHHHhcccCCeEEEEEe
Q 006905 279 AHCSRCLI---PWNQ-------FGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 279 V~~~~~l~---h~~~-------~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
|++..+.+ +|.. ....++.++.++|+|||++++..
T Consensus 102 V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 102 VMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred EEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 99965421 1111 12578999999999999999974
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.6e-06 Score=90.93 Aligned_cols=101 Identities=12% Similarity=0.121 Sum_probs=68.8
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCCCCCCCeeEEEecccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lpf~d~sFDlV~~~~~l 285 (626)
..+|||+|||+|.++..++.+ .++++|+++..+..++. .+...++ .+.+...|... ++++++||+|+++...
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~-n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEI-NIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence 458999999999999999875 58888887755544333 3334454 35666666432 2345689999997432
Q ss_pred ccc-------------c-----------ccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 286 IPW-------------N-----------QFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 286 ~h~-------------~-----------~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
... + .....++.++.++|+|||++++...
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 110 0 0014678899999999999999754
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.57 E-value=8e-08 Score=99.56 Aligned_cols=96 Identities=18% Similarity=0.183 Sum_probs=70.2
Q ss_pred ceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhc----c--cceeccccccCC--CCC-Cccceeeec
Q 006905 470 YRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERG----L--VGTYTNWCEAMS--TYP-RTYDLIHAD 539 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rg----l--i~~~~~~~e~~~--~yp-~t~Dlih~~ 539 (626)
-.+|||+|||.|..+..+++. +. ...|+.+|.++++++.+.+++ + +.+.+ ..+. ++| ++||+|+++
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~-~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~---~d~~~l~~~~~~fD~Vi~~ 153 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGP-TGKVIGVDMTPEMLAKARANARKAGYTNVEFRL---GEIEALPVADNSVDVIISN 153 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCC-CCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEE---cchhhCCCCCCceeEEEEc
Confidence 458999999999866554432 11 126889999999999988753 2 11222 2222 244 799999999
Q ss_pred cccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 540 SVFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 540 ~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
.++.+.. +.+.+|.|+.|+|||||++++.|
T Consensus 154 ~v~~~~~---d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 154 CVINLSP---DKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred CcccCCC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 8887765 45889999999999999999975
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.5e-07 Score=87.97 Aligned_cols=107 Identities=16% Similarity=0.046 Sum_probs=69.5
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEccccc-CCCCC
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAER-LPYPS 273 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~-Lpf~d 273 (626)
.+...+... .+.+|||+|||+|.++..++.. .++++|+++..+..++.+ +.+.+. .+.+...|+.. ++...
T Consensus 31 ~l~~~l~~~--~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n-~~~~~~~~v~~~~~d~~~~~~~~~ 107 (196)
T PRK07402 31 LLISQLRLE--PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRN-CDRFGVKNVEVIEGSAPECLAQLA 107 (196)
T ss_pred HHHHhcCCC--CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-HHHhCCCCeEEEECchHHHHhhCC
Confidence 345555433 3458999999999999888643 688999988655544333 333444 35555555432 33222
Q ss_pred CCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 274 RAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 274 ~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
..+|.|+... ......++.++.++|+|||+|++..+
T Consensus 108 ~~~d~v~~~~-----~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 108 PAPDRVCIEG-----GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CCCCEEEEEC-----CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 3467765422 22347899999999999999999854
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=98.55 E-value=8.1e-08 Score=94.86 Aligned_cols=116 Identities=19% Similarity=0.272 Sum_probs=80.6
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHH----HHHHhcccceeccccccCCC--CCCccceeeecccccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLG----VIYERGLVGTYTNWCEAMST--YPRTYDLIHADSVFSL 544 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~----~~~~rgli~~~~~~~e~~~~--yp~t~Dlih~~~~f~~ 544 (626)
-.|||+|||.|.-|.+|+++|. +|+.+|.++..++ ++-+++|- ++.++..+.+ +|..||+|.+..+|.+
T Consensus 32 g~~LDlgcG~GRNalyLA~~G~---~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD~I~st~v~~f 106 (192)
T PF03848_consen 32 GKALDLGCGEGRNALYLASQGF---DVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFPEEYDFIVSTVVFMF 106 (192)
T ss_dssp SEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEEEEEEESSGGG
T ss_pred CcEEEcCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccccCCcCEEEEEEEecc
Confidence 4799999999999999999997 7888998876655 44456662 2333344444 4589999999989988
Q ss_pred CCCCCCHHHHHHHhhhhccCCcEEEEE---c--------ChHHH---HHHHHHHHhCCCeeEEe
Q 006905 545 YKDRCETEDILLEMDRILRPEGGVIFR---D--------DVDEL---VKVKRIIDALKWQSQIV 594 (626)
Q Consensus 545 ~~~~c~~~~~l~E~dRiLRPgG~~i~~---d--------~~~~~---~~~~~~~~~l~w~~~~~ 594 (626)
+.. -.++.++..|..-|+|||++++- + +.+.+ .+++.... .|++..+
T Consensus 107 L~~-~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il~y 167 (192)
T PF03848_consen 107 LQR-ELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA--DWEILKY 167 (192)
T ss_dssp S-G-GGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT--TSEEEEE
T ss_pred CCH-HHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC--CCeEEEE
Confidence 874 47889999999999999998883 1 11222 34555555 4998754
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.2e-07 Score=99.58 Aligned_cols=118 Identities=12% Similarity=0.122 Sum_probs=86.1
Q ss_pred ceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhcc---cceeccccccCCCCC-Cccceeeecccccc
Q 006905 470 YRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERGL---VGTYTNWCEAMSTYP-RTYDLIHADSVFSL 544 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rgl---i~~~~~~~e~~~~yp-~t~Dlih~~~~f~~ 544 (626)
-.+|||+|||+|.++..+++. +- .+|+.+|.+++|+..+.++.- +.+.+.-.+.+ .++ ++||+|.+..++.+
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~--~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~l-p~~~~sFDvVIs~~~L~~ 190 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDL-PFPTDYADRYVSAGSIEY 190 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhC-CCCCCceeEEEEcChhhh
Confidence 457999999999998888764 21 378899999999999888642 23333212222 244 89999999988887
Q ss_pred CCCCCCHHHHHHHhhhhccCCcEEEEEcChH-----------------HHHHHHHHHHhCCCeeEE
Q 006905 545 YKDRCETEDILLEMDRILRPEGGVIFRDDVD-----------------ELVKVKRIIDALKWQSQI 593 (626)
Q Consensus 545 ~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~~-----------------~~~~~~~~~~~l~w~~~~ 593 (626)
..+ .+.+|.|+.|+|||||.+++.+... ..+++.+++++..++...
T Consensus 191 ~~d---~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~ 253 (340)
T PLN02490 191 WPD---PQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVK 253 (340)
T ss_pred CCC---HHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEE
Confidence 764 4789999999999999998864321 236666777777787543
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.55 E-value=9.2e-07 Score=87.83 Aligned_cols=116 Identities=17% Similarity=0.320 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEE--EEcccc
Q 006905 194 ADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALI--GVLAAE 267 (626)
Q Consensus 194 a~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~--~v~d~~ 267 (626)
.+...+.|.++++.. ..+|||||+|||..+.+++++ .....|++.... ........+.+.+... ...|+.
T Consensus 11 k~pIl~vL~~~l~~~---~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~-~sI~a~~~~~~~~Nv~~P~~lDv~ 86 (204)
T PF06080_consen 11 KDPILEVLKQYLPDS---GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLR-PSIRAWIAEAGLPNVRPPLALDVS 86 (204)
T ss_pred HhHHHHHHHHHhCcc---CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHH-hhHHHHHHhcCCcccCCCeEeecC
Confidence 344555556555322 226999999999999988886 344445544221 1122223333432111 122322
Q ss_pred c--CCC------CCCCeeEEEeccccccccccH--HHHHHHHHhcccCCeEEEEEeC
Q 006905 268 R--LPY------PSRAFDMAHCSRCLIPWNQFG--GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 268 ~--Lpf------~d~sFDlV~~~~~l~h~~~~~--~~~L~Ei~RvLKPGG~lvis~p 314 (626)
. .|. ..++||+|+|.+++ |..... ..+|..+.++|+|||.|++-+|
T Consensus 87 ~~~w~~~~~~~~~~~~~D~i~~~N~l-HI~p~~~~~~lf~~a~~~L~~gG~L~~YGP 142 (204)
T PF06080_consen 87 APPWPWELPAPLSPESFDAIFCINML-HISPWSAVEGLFAGAARLLKPGGLLFLYGP 142 (204)
T ss_pred CCCCccccccccCCCCcceeeehhHH-HhcCHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 2 232 35689999999988 554433 7899999999999999999876
|
The function of this family is unknown. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.8e-07 Score=93.42 Aligned_cols=96 Identities=15% Similarity=0.175 Sum_probs=74.0
Q ss_pred ceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhcc-cceeccccccCCCCC-CccceeeeccccccCC
Q 006905 470 YRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERGL-VGTYTNWCEAMSTYP-RTYDLIHADSVFSLYK 546 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rgl-i~~~~~~~e~~~~yp-~t~Dlih~~~~f~~~~ 546 (626)
...|||+|||+|.++..|++. +- .+++++|.++++++.+.++.- +.+.+. ..+.+++ ++||+|.+.+++.|..
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~--~~v~giDiS~~~l~~A~~~~~~~~~~~~--d~~~~~~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPF--KHIYGVEINEYAVEKAKAYLPNINIIQG--SLFDPFKDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCC--CeEEEEECCHHHHHHHHhhCCCCcEEEe--eccCCCCCCCEEEEEECChhhhCC
Confidence 457999999999999999876 21 279999999999999988532 233331 1223455 8999999999999875
Q ss_pred CCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 547 DRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 547 ~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
.-++..+|.||.|++ +++++|.+
T Consensus 120 -p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 120 -PDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred -HHHHHHHHHHHHhhc--CcEEEEEE
Confidence 346788999999998 57888864
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.7e-07 Score=89.84 Aligned_cols=78 Identities=19% Similarity=0.067 Sum_probs=57.8
Q ss_pred EEeCCccchHHHHHHHHHHc---CCCeEEEEcccccCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEE
Q 006905 236 TMSFAPRDTHEAQVQFALER---GVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 236 avdis~~dls~a~i~~A~er---g~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
++|+++.++..+..+..... ...+.+.++|+..+|+++++||+|++..+++++ .+...+|+|+.|+|||||.|++.
T Consensus 2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~-~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV-VDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred eEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcC-CCHHHHHHHHHHHcCcCeEEEEE
Confidence 56666655544332221111 124678888999999999999999999999555 45799999999999999999987
Q ss_pred eC
Q 006905 313 GP 314 (626)
Q Consensus 313 ~p 314 (626)
..
T Consensus 81 d~ 82 (160)
T PLN02232 81 DF 82 (160)
T ss_pred EC
Confidence 53
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.5e-06 Score=91.05 Aligned_cols=100 Identities=14% Similarity=0.114 Sum_probs=68.2
Q ss_pred CEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEcccccCCCCCCCeeEEEeccccc
Q 006905 213 RTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAERLPYPSRAFDMAHCSRCLI 286 (626)
Q Consensus 213 ~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~Lpf~d~sFDlV~~~~~l~ 286 (626)
.+|||+|||+|.++..++.. .++++|+++..+..+.. .+...+.. +.+..+|... ++++++||+|+++...+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~-n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEE-NAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 58999999999999988874 68888887755543333 23334543 6666666433 34445899999974221
Q ss_pred cc-------------c-----------ccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 287 PW-------------N-----------QFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 287 h~-------------~-----------~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.. + .....++.++.++|+|||++++...
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 11 0 0124678899999999999999754
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.4e-07 Score=107.53 Aligned_cols=102 Identities=16% Similarity=0.167 Sum_probs=74.4
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-----cceeccccccCCC-CC-Cccceeeeccccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-----VGTYTNWCEAMST-YP-RTYDLIHADSVFS 543 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-----i~~~~~~~e~~~~-yp-~t~Dlih~~~~f~ 543 (626)
.+|||+|||+|.++..|++.. -..+|+++|.+++|++.+.++.- +.+++.=+..++. ++ ++||+|.++.++.
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH 498 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILH 498 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHH
Confidence 579999999999998887641 12489999999999998877631 1222222233332 44 8999999987766
Q ss_pred cCC----------CCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 544 LYK----------DRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 544 ~~~----------~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
++- +..++..+|.|+.|+|||||.+++.|.
T Consensus 499 ~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 499 ELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred hhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 431 123567899999999999999999974
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.4e-07 Score=90.99 Aligned_cols=98 Identities=16% Similarity=0.237 Sum_probs=73.4
Q ss_pred CceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc----cceeccccccCCC--CC-Cccceeeeccc
Q 006905 469 RYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL----VGTYTNWCEAMST--YP-RTYDLIHADSV 541 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl----i~~~~~~~e~~~~--yp-~t~Dlih~~~~ 541 (626)
.-.+|||+|||.|.++.++++..--..+++.+|.++.++..+.++.- +..++ ..+.. ++ .+||+|++..+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~---~d~~~~~~~~~~~D~i~~~~~ 115 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQ---ADAEALPFEDNSFDAVTIAFG 115 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEe---cchhcCCCCCCcEEEEEEeee
Confidence 35689999999999999998763211368888888888888887752 22333 22222 33 78999999888
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
+.+.. ++..+|.++.++|||||++++.+
T Consensus 116 ~~~~~---~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 116 LRNVT---DIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred eCCcc---cHHHHHHHHHHHcCCCcEEEEEE
Confidence 76654 56889999999999999999865
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.6e-08 Score=87.62 Aligned_cols=90 Identities=23% Similarity=0.266 Sum_probs=66.3
Q ss_pred EEeccCchhhHhhhhhCCC--eEEEEeccCccCcccHHHHHHhcc-----cceeccccccCCCCC---Cccceeeeccc-
Q 006905 473 ILDMNAHLGGFAAALIDFP--VWVMNVVPAEAKINTLGVIYERGL-----VGTYTNWCEAMSTYP---RTYDLIHADSV- 541 (626)
Q Consensus 473 vlD~g~g~G~faa~l~~~~--v~~mnv~~~~~~~~~l~~~~~rgl-----i~~~~~~~e~~~~yp---~t~Dlih~~~~- 541 (626)
|||+|||.|....+|++.- ---.++..+|.++++|..+.++.- +..+ +..+..+| ++||+|-+.+.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~---~~D~~~l~~~~~~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFV---QADARDLPFSDGKFDLVVCSGLS 77 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEE---ESCTTCHHHHSSSEEEEEE-TTG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEE---ECCHhHCcccCCCeeEEEEcCCc
Confidence 7999999999999998652 011489999999999999999883 2233 34444444 79999999655
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCc
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEG 566 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG 566 (626)
|.+.. .-.++.+|.++-++|||||
T Consensus 78 ~~~~~-~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 78 LHHLS-PEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGSS-HHHHHHHHHHHHHTEEEEE
T ss_pred cCCCC-HHHHHHHHHHHHHHhCCCC
Confidence 77754 3467899999999999998
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.7e-07 Score=96.86 Aligned_cols=104 Identities=23% Similarity=0.300 Sum_probs=68.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHH------c----CCCeEEEEccccc------CCC
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALE------R----GVPALIGVLAAER------LPY 271 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~e------r----g~~~~~~v~d~~~------Lpf 271 (626)
...+|||||||-|.-..-.... .++++|++...+.++..+...- + ...+.+...|... ++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 4679999999987654444443 6889999887777666555211 1 1235566665321 222
Q ss_pred CCCCeeEEEeccccccccccH---HHHHHHHHhcccCCeEEEEEeC
Q 006905 272 PSRAFDMAHCSRCLIPWNQFG---GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 272 ~d~sFDlV~~~~~l~h~~~~~---~~~L~Ei~RvLKPGG~lvis~p 314 (626)
....||+|-|-+++|+..... ..+|..+...|||||+|+.+.|
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 235999999999997766554 4699999999999999999976
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=4e-07 Score=92.25 Aligned_cols=102 Identities=15% Similarity=0.172 Sum_probs=74.6
Q ss_pred CCceeEEeccCchhhHhhhhhC----CCeEEEEeccCccCcccHHHHHHhcc---cceeccccccCCCCCCccceeeecc
Q 006905 468 GRYRNILDMNAHLGGFAAALID----FPVWVMNVVPAEAKINTLGVIYERGL---VGTYTNWCEAMSTYPRTYDLIHADS 540 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~----~~v~~mnv~~~~~~~~~l~~~~~rgl---i~~~~~~~e~~~~yp~t~Dlih~~~ 540 (626)
....+|||+|||+|.++..|++ .+ ...+|+++|.+++|++.+.++.. +.....-++.+..-+.+||+|.|+.
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~ 137 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDG-LRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNH 137 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCC-CCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECC
Confidence 4456899999999999888864 22 12379999999999999988742 1122211234444348999999999
Q ss_pred ccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 541 VFSLYKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 541 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
+|.|..+. ++..+|.||.|++| |.+++.|.
T Consensus 138 ~lhh~~d~-~~~~~l~~~~r~~~--~~~~i~dl 167 (232)
T PRK06202 138 FLHHLDDA-EVVRLLADSAALAR--RLVLHNDL 167 (232)
T ss_pred eeecCChH-HHHHHHHHHHHhcC--eeEEEecc
Confidence 99988753 35679999999999 56666653
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.7e-07 Score=91.65 Aligned_cols=110 Identities=15% Similarity=0.230 Sum_probs=77.4
Q ss_pred CCEEEEeCCCCchHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSRNIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQF 291 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~~ 291 (626)
...|-|+|||-+.++.. ....|..+|+.+. .-.+..+|+.++|.+|++.|++++..+| +..+
T Consensus 181 ~~vIaD~GCGEakiA~~-~~~kV~SfDL~a~---------------~~~V~~cDm~~vPl~d~svDvaV~CLSL--Mgtn 242 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIASS-ERHKVHSFDLVAV---------------NERVIACDMRNVPLEDESVDVAVFCLSL--MGTN 242 (325)
T ss_pred ceEEEecccchhhhhhc-cccceeeeeeecC---------------CCceeeccccCCcCccCcccEEEeeHhh--hccc
Confidence 45799999999987751 1236777777442 1235567888999999999999987776 4556
Q ss_pred HHHHHHHHHhcccCCeEEEEEeCCCCcccccccccchhhhhHHHHHHHHHHHHhhchhhhccc
Q 006905 292 GGIYLIEVDRVLRPGGYWILSGPPINWKKHARGWQRTKEDLNKEQTAIENVAKSLCWEKIKEK 354 (626)
Q Consensus 292 ~~~~L~Ei~RvLKPGG~lvis~pp~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v~~~ 354 (626)
...+++|+.|+|+|||.|+|..-... + .+ ...+.+....+++......
T Consensus 243 ~~df~kEa~RiLk~gG~l~IAEv~SR----f-------~d----v~~f~r~l~~lGF~~~~~d 290 (325)
T KOG3045|consen 243 LADFIKEANRILKPGGLLYIAEVKSR----F-------SD----VKGFVRALTKLGFDVKHKD 290 (325)
T ss_pred HHHHHHHHHHHhccCceEEEEehhhh----c-------cc----HHHHHHHHHHcCCeeeehh
Confidence 68999999999999999999753111 1 11 1225555677887665543
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.8e-07 Score=91.13 Aligned_cols=121 Identities=13% Similarity=0.177 Sum_probs=81.4
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceeccccccCC--CCC-Cccceeeecc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYTNWCEAMS--TYP-RTYDLIHADS 540 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~~~~e~~~--~yp-~t~Dlih~~~ 540 (626)
-..|||+|||.|.++.+|+.+.- -.||+.+|.+..++..+.++ |+ +.+++.-.+.+. .+| .++|.|+++.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 45799999999999999987621 23899999998998877653 33 223332111111 145 6999998753
Q ss_pred ccc-----cCCCCCCHHHHHHHhhhhccCCcEEEEE-cChHHHHHHHHHHHhCC-Cee
Q 006905 541 VFS-----LYKDRCETEDILLEMDRILRPEGGVIFR-DDVDELVKVKRIIDALK-WQS 591 (626)
Q Consensus 541 ~f~-----~~~~~c~~~~~l~E~dRiLRPgG~~i~~-d~~~~~~~~~~~~~~l~-w~~ 591 (626)
--. |...|...+.+|.++.|+|||||.+++. |..+....+.+.+...- |+.
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~ 153 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFEN 153 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEe
Confidence 222 2234555678999999999999999885 66666666666555433 443
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.48 E-value=3e-06 Score=87.40 Aligned_cols=117 Identities=16% Similarity=0.192 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEccccc-
Q 006905 194 ADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAER- 268 (626)
Q Consensus 194 a~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~- 268 (626)
....++.+...+... ....+|||+|||+|.++..++.. .++++|+++..+..++.+ +...+. .+...|...
T Consensus 70 Te~Lv~~~l~~~~~~-~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N-~~~~~~--~~~~~D~~~~ 145 (251)
T TIGR03704 70 TEFLVDEAAALARPR-SGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRN-LADAGG--TVHEGDLYDA 145 (251)
T ss_pred HHHHHHHHHHhhccc-CCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCC--EEEEeechhh
Confidence 344444444443211 12348999999999999888764 588888877555443333 223343 455556433
Q ss_pred CCC-CCCCeeEEEecccccccc---------------------cc----HHHHHHHHHhcccCCeEEEEEeC
Q 006905 269 LPY-PSRAFDMAHCSRCLIPWN---------------------QF----GGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 269 Lpf-~d~sFDlV~~~~~l~h~~---------------------~~----~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++. ..+.||+|+++.-..... .+ ...++..+.++|+|||.+++...
T Consensus 146 l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 146 LPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred cchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 221 135799999987443211 00 12677778899999999999854
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.3e-06 Score=93.17 Aligned_cols=107 Identities=10% Similarity=0.044 Sum_probs=70.8
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEcccccCC
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAERLP 270 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~~Lp 270 (626)
....+.+.+...+ +.+|||||||+|.++..+++. .|+++|+++..+..++ +.+...+.. +.+..+|....+
T Consensus 68 l~a~ll~~L~i~~--g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar-~~l~~~g~~nV~~i~gD~~~~~ 144 (322)
T PRK13943 68 LMALFMEWVGLDK--GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAK-RNVRRLGIENVIFVCGDGYYGV 144 (322)
T ss_pred HHHHHHHhcCCCC--CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHH-HHHHHcCCCcEEEEeCChhhcc
Confidence 3334445554443 458999999999999998874 2788888775444333 233344543 556666755554
Q ss_pred CCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 271 YPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 271 f~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
...+.||+|++...+.+ ....+.++|+|||.+++..
T Consensus 145 ~~~~~fD~Ii~~~g~~~-------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 145 PEFAPYDVIFVTVGVDE-------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cccCCccEEEECCchHH-------hHHHHHHhcCCCCEEEEEe
Confidence 44567999999765422 2345678999999998853
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.9e-07 Score=89.46 Aligned_cols=125 Identities=16% Similarity=0.217 Sum_probs=83.4
Q ss_pred chhhhHHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--c
Q 006905 443 FQQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--V 516 (626)
Q Consensus 443 f~~d~~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i 516 (626)
|....++=..++......+..........+|||+|||.|.++..+++.+. .++.+|.++.++..+.++ ++ +
T Consensus 19 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~ 95 (224)
T TIGR01983 19 FKPLHKMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA---NVTGIDASEENIEVAKLHAKKDPLLKI 95 (224)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCce
Confidence 44444443444554444443211002245899999999999999988754 588899988888877664 22 2
Q ss_pred ceeccccccCC-CCCCccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 517 GTYTNWCEAMS-TYPRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 517 ~~~~~~~e~~~-~yp~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
...+.-.+.+. ..+.+||+|++..++.+.. +...+|.++.++|+|||.+++++.
T Consensus 96 ~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~~---~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 96 EYRCTSVEDLAEKGAKSFDVVTCMEVLEHVP---DPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred EEEeCCHHHhhcCCCCCccEEEehhHHHhCC---CHHHHHHHHHHhcCCCcEEEEEec
Confidence 22221112222 2247999999988887765 568899999999999999999753
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.7e-07 Score=93.52 Aligned_cols=101 Identities=16% Similarity=0.202 Sum_probs=66.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhCCcEEEeCCccchHHHHHHHHHHc-----CCCeEEEEcccccCCCCCCCeeEEEecccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSRNIITMSFAPRDTHEAQVQFALER-----GVPALIGVLAAERLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~~V~avdis~~dls~a~i~~A~er-----g~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l 285 (626)
...++||.|+|.|..+..|+-..+..||+. +..+..++.|.+. .....+.....+.+.-+.+.||+|++-+|+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlV--Ep~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLV--EPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEE--ES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEe--ccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 356899999999999998877644444442 2344566666532 112344555666665445799999999999
Q ss_pred ccccccH-HHHHHHHHhcccCCeEEEEEe
Q 006905 286 IPWNQFG-GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 286 ~h~~~~~-~~~L~Ei~RvLKPGG~lvis~ 313 (626)
.|..++. ..+|+.+...|+|+|.+++-.
T Consensus 133 ghLTD~dlv~fL~RCk~~L~~~G~IvvKE 161 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALKPNGVIVVKE 161 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCcCCcEEEEEe
Confidence 9998765 789999999999999999954
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.5e-07 Score=91.02 Aligned_cols=101 Identities=11% Similarity=0.102 Sum_probs=77.1
Q ss_pred CceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccc----eeccccccCCCCCCccceeeecccccc
Q 006905 469 RYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVG----TYTNWCEAMSTYPRTYDLIHADSVFSL 544 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~----~~~~~~e~~~~yp~t~Dlih~~~~f~~ 544 (626)
...+|||+|||.|.++.+|++.+. .|+.+|.+++++..+.++.-.. -..-.+..+...|.+||+|-+..++.+
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~ 131 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIH 131 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHh
Confidence 357899999999999999998865 7899999999999998874311 111122344445689999999888877
Q ss_pred CCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 545 YKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 545 ~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
... .++..++.++.|+++|++++.+...
T Consensus 132 ~~~-~~~~~~l~~i~~~~~~~~~i~~~~~ 159 (219)
T TIGR02021 132 YPA-SDMAKALGHLASLTKERVIFTFAPK 159 (219)
T ss_pred CCH-HHHHHHHHHHHHHhCCCEEEEECCC
Confidence 643 3567899999999999888887643
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.5e-06 Score=90.50 Aligned_cols=100 Identities=12% Similarity=0.100 Sum_probs=68.4
Q ss_pred CEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCCCCCCCeeEEEeccccc
Q 006905 213 RTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLPYPSRAFDMAHCSRCLI 286 (626)
Q Consensus 213 ~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~ 286 (626)
.+|||+|||+|.++..++.. .++++|+++..+..++. .+...++ .+.+...|... ++++++||+|+|+....
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~-n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEI-NIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 58999999999999998875 68888887755554333 3334454 36666666432 23456899999974321
Q ss_pred c-------------ccc-----------cHHHHHHHHHhcccCCeEEEEEeC
Q 006905 287 P-------------WNQ-----------FGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 287 h-------------~~~-----------~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
. .+. ....++.++.++|+|||.+++...
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1 100 014678999999999999999743
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.6e-07 Score=92.18 Aligned_cols=118 Identities=18% Similarity=0.173 Sum_probs=81.0
Q ss_pred eecCCCCCCCCCcHHHHHHHHHHhhccC----CCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHH
Q 006905 181 FRFPGGGTMFPNGADAYIDDIGKLINLN----DGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALE 254 (626)
Q Consensus 181 ~~Fp~ggt~F~~ga~~yi~~L~~ll~l~----~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~e 254 (626)
=.|-|.|+||--..+ ++.+++... +....++||+|+|.|.++..|+.. .|.+++ ++..|+....+
T Consensus 82 NG~lgrGsMFifSe~----QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATE-----lS~tMr~rL~k 152 (288)
T KOG3987|consen 82 NGFLGRGSMFIFSEE----QFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATE-----LSWTMRDRLKK 152 (288)
T ss_pred ccccccCceEEecHH----HHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHHHHHHH-----hhHHHHHHHhh
Confidence 345667777754444 344555433 223578999999999999998875 555554 45667777766
Q ss_pred cCCCeEEEEcccccCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccC-CeEEEEE
Q 006905 255 RGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRP-GGYWILS 312 (626)
Q Consensus 255 rg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKP-GG~lvis 312 (626)
.+..+. ......--+-.||+|.|...+ .-..++..+|+++..+|+| .|..+++
T Consensus 153 k~ynVl----~~~ew~~t~~k~dli~clNlL-DRc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 153 KNYNVL----TEIEWLQTDVKLDLILCLNLL-DRCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred cCCcee----eehhhhhcCceeehHHHHHHH-HhhcChHHHHHHHHHHhccCCCcEEEE
Confidence 664322 222222234579999998877 5556679999999999999 8888886
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.8e-06 Score=89.06 Aligned_cols=103 Identities=11% Similarity=0.092 Sum_probs=69.3
Q ss_pred CCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHH-----cCCCeEEEEccccc-CCCCCCCeeEE
Q 006905 210 GSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALE-----RGVPALIGVLAAER-LPYPSRAFDMA 279 (626)
Q Consensus 210 ~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~e-----rg~~~~~~v~d~~~-Lpf~d~sFDlV 279 (626)
...++||+||||+|..+..++++ .|+++|+++..+..+...+... ....+.+...|+.. +...+++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 34568999999999999998876 5788888775444333222211 12235666667443 33356789999
Q ss_pred Eecccccccccc----HHHHHHHHHhcccCCeEEEEEe
Q 006905 280 HCSRCLIPWNQF----GGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 280 ~~~~~l~h~~~~----~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
++...- ++... ...+++.+.++|+|||.+++..
T Consensus 155 i~D~~d-p~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 155 IVDSTD-PVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EECCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 986533 33221 1578899999999999999863
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.2e-06 Score=87.08 Aligned_cols=134 Identities=15% Similarity=0.140 Sum_probs=77.2
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh-----cccceeccccccC--CCCCCccceeeeccccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER-----GLVGTYTNWCEAM--STYPRTYDLIHADSVFS 543 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r-----gli~~~~~~~e~~--~~yp~t~Dlih~~~~f~ 543 (626)
-.|||+|||+|+++.+|++.-- .-.|..+|.++.|++.+.++ ++.....|-.+.. ...+.+||+|-++..
T Consensus 74 ~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d~~-- 150 (226)
T PRK04266 74 SKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQDVA-- 150 (226)
T ss_pred CEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEECCC--
Confidence 4699999999999999987610 12588889998888755433 2222222322211 123477998765211
Q ss_pred cCCCCCCHHHHHHHhhhhccCCcEEEEE------cC----hHHHHHHHHHHHhCCCeeE-EeecCCCCC-CcceEEEEEe
Q 006905 544 LYKDRCETEDILLEMDRILRPEGGVIFR------DD----VDELVKVKRIIDALKWQSQ-IVDHEDGPL-EREKLLFAVK 611 (626)
Q Consensus 544 ~~~~~c~~~~~l~E~dRiLRPgG~~i~~------d~----~~~~~~~~~~~~~l~w~~~-~~~~e~~~~-~~e~~l~~~K 611 (626)
..-....+|.|+.|+|||||.++|+ |. ........+.++.-..+.. .++. +|. ...-.+|++|
T Consensus 151 ---~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~l--~p~~~~h~~~v~~~ 225 (226)
T PRK04266 151 ---QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVDL--EPYHKDHAAVVARK 225 (226)
T ss_pred ---ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEcC--CCCcCCeEEEEEEc
Confidence 1001134688999999999999993 32 1222233355554445443 2222 333 2355666665
Q ss_pred c
Q 006905 612 L 612 (626)
Q Consensus 612 ~ 612 (626)
+
T Consensus 226 ~ 226 (226)
T PRK04266 226 K 226 (226)
T ss_pred C
Confidence 3
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.42 E-value=8.3e-07 Score=89.05 Aligned_cols=110 Identities=15% Similarity=0.161 Sum_probs=69.4
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEccccc
Q 006905 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAER 268 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~ 268 (626)
......+.+.+.+.++ .+|||||||+|.+++.|+.. .|++++..+.-...+. +.....+. ++.+..+|...
T Consensus 58 P~~~a~~l~~L~l~pg--~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~-~~l~~~~~~nv~~~~gdg~~ 134 (209)
T PF01135_consen 58 PSMVARMLEALDLKPG--DRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERAR-RNLARLGIDNVEVVVGDGSE 134 (209)
T ss_dssp HHHHHHHHHHTTC-TT---EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHH-HHHHHHTTHSEEEEES-GGG
T ss_pred HHHHHHHHHHHhcCCC--CEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHH-HHHHHhccCceeEEEcchhh
Confidence 4455566677766654 49999999999999988875 3778888773333333 33333344 46677777443
Q ss_pred CCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 269 LPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 269 Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
---....||.|++..+.... -..+.+.||+||.+++...
T Consensus 135 g~~~~apfD~I~v~~a~~~i-------p~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 135 GWPEEAPFDRIIVTAAVPEI-------PEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp TTGGG-SEEEEEESSBBSS---------HHHHHTEEEEEEEEEEES
T ss_pred ccccCCCcCEEEEeeccchH-------HHHHHHhcCCCcEEEEEEc
Confidence 22235679999998876222 1346778999999999743
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.8e-06 Score=84.31 Aligned_cols=99 Identities=24% Similarity=0.289 Sum_probs=71.6
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc----c---cceeccccccCCCCC-Cccceeeeccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG----L---VGTYTNWCEAMSTYP-RTYDLIHADSV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg----l---i~~~~~~~e~~~~yp-~t~Dlih~~~~ 541 (626)
-..|||+|||.|.++..+++..--.-+++.+|.++++++.+.++- + +.+.+.-.+.+. ++ .+||+|++..+
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~I~~~~~ 130 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP-FPDNSFDAVTIAFG 130 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC-CCCCCccEEEEecc
Confidence 357999999999999998776310137889999888888887763 1 233331111111 33 78999999777
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
+.+.. +...+|.++.++|+|||.+++.+
T Consensus 131 l~~~~---~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 131 LRNVP---DIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred cccCC---CHHHHHHHHHHhccCCcEEEEEE
Confidence 66544 67899999999999999999864
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.40 E-value=4e-07 Score=89.32 Aligned_cols=137 Identities=12% Similarity=0.110 Sum_probs=75.9
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceeccccccC------CCCC-Cccceeeecccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAM------STYP-RTYDLIHADSVF 542 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~------~~yp-~t~Dlih~~~~f 542 (626)
-.+|||+|||+|+++..++++..-.-.|+.+|.++.+ . ..++--+..|..+.. ..+| .+||+|-++...
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-~---~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~ 108 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-P---IENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAP 108 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-c---CCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCC
Confidence 3579999999999998887652111246777777433 1 123211122332211 1244 789999986542
Q ss_pred c--------cCCCCCCHHHHHHHhhhhccCCcEEEEE-cChHHHHHHHHHHHhCCCeeEEe-ecCCCCCCcceEEEEE
Q 006905 543 S--------LYKDRCETEDILLEMDRILRPEGGVIFR-DDVDELVKVKRIIDALKWQSQIV-DHEDGPLEREKLLFAV 610 (626)
Q Consensus 543 ~--------~~~~~c~~~~~l~E~dRiLRPgG~~i~~-d~~~~~~~~~~~~~~l~w~~~~~-~~e~~~~~~e~~l~~~ 610 (626)
. +....++++.+|.++.|+|||||.+++. ...+.+.++-..++..=|...+. |.-......|+.+||.
T Consensus 109 ~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (188)
T TIGR00438 109 NISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKLFEKVKVTKPQASRKRSAEVYIVAK 186 (188)
T ss_pred CCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhhhceEEEeCCCCCCcccceEEEEEe
Confidence 1 1111123467999999999999999994 22222222222222222444433 2222233578999985
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.2e-06 Score=94.87 Aligned_cols=103 Identities=15% Similarity=0.164 Sum_probs=72.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCC--CCCCCeeEEEeccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLP--YPSRAFDMAHCSRC 284 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lp--f~d~sFDlV~~~~~ 284 (626)
++.+|||+|||+|..+..++++ .++++|+++..+...+ +.+...|..+.+...|...++ ++.++||.|++...
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~-~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVR-ENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCC
Confidence 3568999999999999888875 5888888776555433 334455666677777776654 34678999995331
Q ss_pred cc-----------ccccc----------HHHHHHHHHhcccCCeEEEEEeC
Q 006905 285 LI-----------PWNQF----------GGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 285 l~-----------h~~~~----------~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.. .|... ...+|.++.++|||||++++++-
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 10 12111 13689999999999999999864
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.3e-06 Score=84.25 Aligned_cols=105 Identities=15% Similarity=0.088 Sum_probs=68.0
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCee
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFD 277 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFD 277 (626)
.+.+.+.... +.++||+|||+|.++..++++ .++++|+++......+.+.. ....+.+...|+..+++++..||
T Consensus 4 ~i~~~~~~~~--~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~--~~~~v~ii~~D~~~~~~~~~~~d 79 (169)
T smart00650 4 KIVRAANLRP--GDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFA--AADNLTVIHGDALKFDLPKLQPY 79 (169)
T ss_pred HHHHhcCCCC--cCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhc--cCCCEEEEECchhcCCccccCCC
Confidence 3444443333 458999999999999999987 67888886643332222111 11246677788888888877899
Q ss_pred EEEeccccccccccHHHHHHHHHhc--ccCCeEEEEE
Q 006905 278 MAHCSRCLIPWNQFGGIYLIEVDRV--LRPGGYWILS 312 (626)
Q Consensus 278 lV~~~~~l~h~~~~~~~~L~Ei~Rv--LKPGG~lvis 312 (626)
.|+++..+ +.. ...+..+.+. +.++|.|++.
T Consensus 80 ~vi~n~Py-~~~---~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 80 KVVGNLPY-NIS---TPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred EEEECCCc-ccH---HHHHHHHHhcCCCcceEEEEEE
Confidence 99998755 322 2333333332 4588888885
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.3e-07 Score=89.92 Aligned_cols=117 Identities=18% Similarity=0.303 Sum_probs=93.5
Q ss_pred cCCCCCceeEEeccCchhhHhhhhhC-CCeEEEEeccCccCcccHHHHHHhcccceeccccccCCCCC-Cccceeeeccc
Q 006905 464 LGQSGRYRNILDMNAHLGGFAAALID-FPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYP-RTYDLIHADSV 541 (626)
Q Consensus 464 ~~~~~~~r~vlD~g~g~G~faa~l~~-~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~yp-~t~Dlih~~~~ 541 (626)
+.+ | -.|||+|||.|.+-++|.+ ++| ...+++.++..+..+.+||+-=+.+|.-+.+..|| .+||.|-.++.
T Consensus 11 I~p-g--srVLDLGCGdG~LL~~L~~~k~v---~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqt 84 (193)
T PF07021_consen 11 IEP-G--SRVLDLGCGDGELLAYLKDEKQV---DGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQT 84 (193)
T ss_pred cCC-C--CEEEecCCCchHHHHHHHHhcCC---eEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhH
Confidence 555 3 5799999999999999987 566 67888888889999999999544448889999999 99999999888
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEE------------------------------cChH----HHHHHHHHHHhC
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFR------------------------------DDVD----ELVKVKRIIDAL 587 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~------------------------------d~~~----~~~~~~~~~~~l 587 (626)
+.+..+ .+.+|.||-|| |...|++ |+.. .+...+.+.+.+
T Consensus 85 LQ~~~~---P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~ 158 (193)
T PF07021_consen 85 LQAVRR---PDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCREL 158 (193)
T ss_pred HHhHhH---HHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHC
Confidence 887763 57899999766 6688887 2222 367777788888
Q ss_pred CCeeE
Q 006905 588 KWQSQ 592 (626)
Q Consensus 588 ~w~~~ 592 (626)
..++.
T Consensus 159 ~i~I~ 163 (193)
T PF07021_consen 159 GIRIE 163 (193)
T ss_pred CCEEE
Confidence 77765
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.2e-07 Score=90.23 Aligned_cols=118 Identities=19% Similarity=0.309 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC------CcEEEeCCccchHHHHHHHHHHcC------CCeEE
Q 006905 194 ADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR------NIITMSFAPRDTHEAQVQFALERG------VPALI 261 (626)
Q Consensus 194 a~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~------~V~avdis~~dls~a~i~~A~erg------~~~~~ 261 (626)
..-..+.+.++++.......+||+||||.|....-+.+- .+.++|++|. ++++.+++. ..+.+
T Consensus 54 R~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~-----Ai~~vk~~~~~~e~~~~afv 128 (264)
T KOG2361|consen 54 RNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPR-----AIELVKKSSGYDESRVEAFV 128 (264)
T ss_pred hHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChH-----HHHHHHhccccchhhhcccc
Confidence 343445667777655444448999999999777666653 4778888774 344443331 11222
Q ss_pred EEccccc--CCCCCCCeeEEEeccccccccccH-HHHHHHHHhcccCCeEEEEEeCCC
Q 006905 262 GVLAAER--LPYPSRAFDMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILSGPPI 316 (626)
Q Consensus 262 ~v~d~~~--Lpf~d~sFDlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~pp~ 316 (626)
..++... -|...+++|+|++.++|...+.+. ..++.++.++|||||.+++.....
T Consensus 129 ~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~ 186 (264)
T KOG2361|consen 129 WDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGR 186 (264)
T ss_pred eeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeeccc
Confidence 2222222 346688999999999886655443 789999999999999999986543
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.1e-06 Score=87.41 Aligned_cols=93 Identities=18% Similarity=0.218 Sum_probs=70.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEeccccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLI 286 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~ 286 (626)
..++|||||+|.|.++..++++ .+++.|+ +..++.+.+ ...+.+..+|.. -++|. +|+++..++||
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl------p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh 169 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL------PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVLH 169 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-------HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSGG
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc------Hhhhhcccc-ccccccccccHH-hhhcc--ccceeeehhhh
Confidence 3568999999999999999886 4556665 233444444 456778878865 56665 99999999999
Q ss_pred cccccH-HHHHHHHHhcccCC--eEEEEEe
Q 006905 287 PWNQFG-GIYLIEVDRVLRPG--GYWILSG 313 (626)
Q Consensus 287 h~~~~~-~~~L~Ei~RvLKPG--G~lvis~ 313 (626)
+|.++. ..+|+++.+.|+|| |.++|..
T Consensus 170 ~~~d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 170 DWSDEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp GS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred hcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 998766 78999999999999 9999975
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.38 E-value=9.1e-07 Score=92.17 Aligned_cols=104 Identities=20% Similarity=0.254 Sum_probs=73.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHc------CCCeEEEEcc------cccCCCCCCC
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALER------GVPALIGVLA------AERLPYPSRA 275 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~er------g~~~~~~v~d------~~~Lpf~d~s 275 (626)
.+..+||+|||-|.-+....+. .++++||+...+.+++.+.-.-+ -.++.+..+| ...+++++.+
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~ 196 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPR 196 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCC
Confidence 3557999999998665555444 67888887766665554432211 1246666666 2345667777
Q ss_pred eeEEEeccccccccccH---HHHHHHHHhcccCCeEEEEEeC
Q 006905 276 FDMAHCSRCLIPWNQFG---GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 276 FDlV~~~~~l~h~~~~~---~~~L~Ei~RvLKPGG~lvis~p 314 (626)
||+|-|-+|+|.-.... ..+|+++.+.|||||+||-+.|
T Consensus 197 fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 197 FDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred cceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 99999999995433322 5789999999999999999877
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=6.9e-07 Score=90.28 Aligned_cols=98 Identities=15% Similarity=0.260 Sum_probs=74.4
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc-cceec-cccccCCCCCCccceeeeccccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL-VGTYT-NWCEAMSTYPRTYDLIHADSVFS 543 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl-i~~~~-~~~e~~~~yp~t~Dlih~~~~f~ 543 (626)
-..|||+|||.|.++..|++.+. +++.+|.+++++..+.++ ++ +.+.+ ++.+.....+.+||+|++..+|.
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~ 125 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARLGA---DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLE 125 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHcCC---eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhh
Confidence 45699999999999999988764 789999988888877765 32 22222 22221112238999999998888
Q ss_pred cCCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 544 LYKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 544 ~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
+.. +...+|.++.|+|+|||.+++...
T Consensus 126 ~~~---~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 126 HVP---DPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred ccC---CHHHHHHHHHHHcCCCcEEEEEec
Confidence 776 457899999999999999999854
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.6e-06 Score=87.12 Aligned_cols=96 Identities=16% Similarity=0.185 Sum_probs=72.1
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-------cceeccccccCCCCCCccceeeecccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-------VGTYTNWCEAMSTYPRTYDLIHADSVF 542 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-------i~~~~~~~e~~~~yp~t~Dlih~~~~f 542 (626)
..+|||+|||.|.++..|++.+. .|+.+|.+++++..+.++-- +...+ ..+...+.+||+|.+..+|
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~---~d~~~~~~~fD~v~~~~~l 137 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGLAGNITFEV---GDLESLLGRFDTVVCLDVL 137 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccCcEEEE---cCchhccCCcCEEEEcchh
Confidence 56899999999999999998875 58999999999998877621 22222 2343334899999999998
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
.++... .+..++.++.|++++++.+.+..
T Consensus 138 ~~~~~~-~~~~~l~~l~~~~~~~~~i~~~~ 166 (230)
T PRK07580 138 IHYPQE-DAARMLAHLASLTRGSLIFTFAP 166 (230)
T ss_pred hcCCHH-HHHHHHHHHHhhcCCeEEEEECC
Confidence 776542 56789999999887666555443
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.5e-07 Score=91.22 Aligned_cols=96 Identities=13% Similarity=0.085 Sum_probs=72.9
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHH-Hhcccce--------------eccccccCCCCC----C
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIY-ERGLVGT--------------YTNWCEAMSTYP----R 531 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~-~rgli~~--------------~~~~~e~~~~yp----~ 531 (626)
.+|||+|||.|.-|.+|+++|. +|+++|.++..++.++ +.|+-.. +.-++..+..++ .
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 5899999999999999999987 8999999988888753 3444211 112455565554 5
Q ss_pred ccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEE
Q 006905 532 TYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIF 570 (626)
Q Consensus 532 t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~ 570 (626)
+||+|....+|.+.. ....+.++..|.|+|||||++++
T Consensus 113 ~fD~i~D~~~~~~l~-~~~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 113 PVDAVYDRAALIALP-EEMRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred CcCEEEechhhccCC-HHHHHHHHHHHHHHcCCCCeEEE
Confidence 799998878777664 33557799999999999997444
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.1e-07 Score=90.29 Aligned_cols=115 Identities=20% Similarity=0.178 Sum_probs=79.5
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceecccc--------ccCCCCCCccceeeec
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWC--------EAMSTYPRTYDLIHAD 539 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~--------e~~~~yp~t~Dlih~~ 539 (626)
..-|.++|+|||.|--+..+++..- +|+++|.++.||+++...--+ +||+=- +.+.--++|.|||-|.
T Consensus 32 ~~h~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~-~y~~t~~~ms~~~~v~L~g~e~SVDlI~~A 107 (261)
T KOG3010|consen 32 EGHRLAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPV-TYCHTPSTMSSDEMVDLLGGEESVDLITAA 107 (261)
T ss_pred CCcceEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCc-ccccCCccccccccccccCCCcceeeehhh
Confidence 3456999999999944444555543 899999999999977665443 333221 2222236999999997
Q ss_pred cccccCCCCCCHHHHHHHhhhhccCCc-EEEE---EcChHHHHHHHHHHHhCCCe
Q 006905 540 SVFSLYKDRCETEDILLEMDRILRPEG-GVIF---RDDVDELVKVKRIIDALKWQ 590 (626)
Q Consensus 540 ~~f~~~~~~c~~~~~l~E~dRiLRPgG-~~i~---~d~~~~~~~~~~~~~~l~w~ 590 (626)
+.|+ -|+++..+.++.|||||.| .+.+ +|..-...++..+..++.|+
T Consensus 108 qa~H----WFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 108 QAVH----WFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred hhHH----hhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 7764 4899999999999999988 3332 55444455555666666664
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.33 E-value=1e-06 Score=86.94 Aligned_cols=88 Identities=22% Similarity=0.277 Sum_probs=66.4
Q ss_pred eEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceeccccccCCCCC-CccceeeeccccccCCCCCC
Q 006905 472 NILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYP-RTYDLIHADSVFSLYKDRCE 550 (626)
Q Consensus 472 ~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~yp-~t~Dlih~~~~f~~~~~~c~ 550 (626)
+|||+|||.|.++.+|++..- .+++.+|.++.++..+.++++--...+..+.+..++ ++||+|.++.+|.+.. +
T Consensus 16 ~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~---d 90 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR---N 90 (194)
T ss_pred EEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc---C
Confidence 799999999999999976521 256788999899999988875222223333333455 8999999999998876 4
Q ss_pred HHHHHHHhhhhccC
Q 006905 551 TEDILLEMDRILRP 564 (626)
Q Consensus 551 ~~~~l~E~dRiLRP 564 (626)
...+|.||.|++++
T Consensus 91 ~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 91 PEEILDEMLRVGRH 104 (194)
T ss_pred HHHHHHHHHHhCCe
Confidence 68899999887765
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.5e-06 Score=86.64 Aligned_cols=116 Identities=12% Similarity=0.159 Sum_probs=71.3
Q ss_pred HHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHc-CCCeEEEEccccc-C
Q 006905 196 AYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALER-GVPALIGVLAAER-L 269 (626)
Q Consensus 196 ~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~er-g~~~~~~v~d~~~-L 269 (626)
.|.+.+...+... ...++|||||||+|.++..+++. .++++|+++..+..+...+.... ...+.+..+|... +
T Consensus 52 ~y~~~m~~~l~~~-~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l 130 (262)
T PRK04457 52 AYTRAMMGFLLFN-PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYI 130 (262)
T ss_pred HHHHHHHHHHhcC-CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHH
Confidence 4555554433322 23568999999999999888765 57888887744432222221111 1235566667433 2
Q ss_pred CCCCCCeeEEEecccc-ccccc--cHHHHHHHHHhcccCCeEEEEE
Q 006905 270 PYPSRAFDMAHCSRCL-IPWNQ--FGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 270 pf~d~sFDlV~~~~~l-~h~~~--~~~~~L~Ei~RvLKPGG~lvis 312 (626)
.-..++||+|++...- ...+. ....+++++.++|+|||.+++.
T Consensus 131 ~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 131 AVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred HhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 3224689999985311 01111 1268999999999999999995
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.4e-06 Score=88.38 Aligned_cols=136 Identities=20% Similarity=0.293 Sum_probs=89.5
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh---cc---cceec-cccccCCCCC-Cccceeeeccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER---GL---VGTYT-NWCEAMSTYP-RTYDLIHADSV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r---gl---i~~~~-~~~e~~~~yp-~t~Dlih~~~~ 541 (626)
-.+|||+|||.|.++.+|+... -..+|+.+|.++.++..+.++ +. +.+++ |+ +...+ .+||+|.++--
T Consensus 109 ~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~---~~~~~~~~fD~Iv~npP 184 (275)
T PRK09328 109 PLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDW---FEPLPGGRFDLIVSNPP 184 (275)
T ss_pred CCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccc---cCcCCCCceeEEEECCC
Confidence 4579999999999999998763 123789999998899888775 22 22332 33 33344 79999988533
Q ss_pred cccCC-------------C-------C---CCHHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHhCCCeeEEeecCC
Q 006905 542 FSLYK-------------D-------R---CETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQIVDHED 598 (626)
Q Consensus 542 f~~~~-------------~-------~---c~~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~l~w~~~~~~~e~ 598 (626)
+.... . . -.+..++.++.++|+|||++++.-....-..++.++....+..... ..+
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~-~~d 263 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVET-RKD 263 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEE-ecC
Confidence 22100 0 0 0134588889999999999999655455567888877766653222 122
Q ss_pred CCCCcceEEEEEe
Q 006905 599 GPLEREKLLFAVK 611 (626)
Q Consensus 599 ~~~~~e~~l~~~K 611 (626)
-.+.+++++++|
T Consensus 264 -~~~~~r~~~~~~ 275 (275)
T PRK09328 264 -LAGRDRVVLGRR 275 (275)
T ss_pred -CCCCceEEEEEC
Confidence 225678888765
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.5e-06 Score=92.41 Aligned_cols=113 Identities=9% Similarity=0.068 Sum_probs=73.7
Q ss_pred HHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEE--EEcccccCCC--C
Q 006905 201 IGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALI--GVLAAERLPY--P 272 (626)
Q Consensus 201 L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~--~v~d~~~Lpf--~ 272 (626)
+...+...+ +.+|||+|||+|..+..+++. .++++|+++..+.... +.+...|+.+.+ ..+|....++ +
T Consensus 230 ~~~~L~~~~--g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~-~n~~r~g~~~~v~~~~~d~~~~~~~~~ 306 (426)
T TIGR00563 230 VATWLAPQN--EETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVY-ENLKRLGLTIKAETKDGDGRGPSQWAE 306 (426)
T ss_pred HHHHhCCCC--CCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEecccccccccccc
Confidence 444444333 458999999999988888764 6889999886555433 334445665333 4444444443 5
Q ss_pred CCCeeEEEec------cccccccc-----c----------HHHHHHHHHhcccCCeEEEEEeCCC
Q 006905 273 SRAFDMAHCS------RCLIPWNQ-----F----------GGIYLIEVDRVLRPGGYWILSGPPI 316 (626)
Q Consensus 273 d~sFDlV~~~------~~l~h~~~-----~----------~~~~L~Ei~RvLKPGG~lvis~pp~ 316 (626)
+++||.|++. ..+.+.++ . +..+|.++.++|||||.+++++-..
T Consensus 307 ~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 307 NEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred ccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 6789999952 22222111 1 2578999999999999999986533
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.2e-06 Score=83.38 Aligned_cols=107 Identities=14% Similarity=0.180 Sum_probs=70.7
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcc-cccCCCC
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV-PALIGVLA-AERLPYP 272 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d-~~~Lpf~ 272 (626)
....+.+++.+.++ .+|||||||+|..++.|++. .|++++..+. +.+.+.+.....|. ++.+.++| ..-+| +
T Consensus 60 ~vA~m~~~L~~~~g--~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~-L~~~A~~~L~~lg~~nV~v~~gDG~~G~~-~ 135 (209)
T COG2518 60 MVARMLQLLELKPG--DRVLEIGTGSGYQAAVLARLVGRVVSIERIEE-LAEQARRNLETLGYENVTVRHGDGSKGWP-E 135 (209)
T ss_pred HHHHHHHHhCCCCC--CeEEEECCCchHHHHHHHHHhCeEEEEEEcHH-HHHHHHHHHHHcCCCceEEEECCcccCCC-C
Confidence 33456666666654 49999999999999999986 6777776552 22222222334455 45566666 33344 3
Q ss_pred CCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 273 SRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 273 d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
...||.|+...+....+ ..+.+.|||||.+++-..
T Consensus 136 ~aPyD~I~Vtaaa~~vP-------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 136 EAPYDRIIVTAAAPEVP-------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCcCEEEEeeccCCCC-------HHHHHhcccCCEEEEEEc
Confidence 47899999988763332 335677999999999643
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.1e-06 Score=85.33 Aligned_cols=98 Identities=24% Similarity=0.356 Sum_probs=68.4
Q ss_pred EEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEccccc-CC--CCCCCeeEEEecccc
Q 006905 214 TAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAER-LP--YPSRAFDMAHCSRCL 285 (626)
Q Consensus 214 ~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~~-Lp--f~d~sFDlV~~~~~l 285 (626)
.+||||||.|.+...++.. +++++|+...-+..+. +.+...++. +.+..+|+.. ++ ++++++|.|+.++.=
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~-~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKAL-RKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHH-HHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHH-HHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 8999999999999999886 7889999775554443 344444554 5566666555 33 567999999987743
Q ss_pred ccccccH--------HHHHHHHHhcccCCeEEEEEe
Q 006905 286 IPWNQFG--------GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 286 ~h~~~~~--------~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+|+... ..+|.++.++|+|||.|.+.+
T Consensus 99 -PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 99 -PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred -CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 665422 489999999999999999974
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.2e-06 Score=77.01 Aligned_cols=95 Identities=19% Similarity=0.161 Sum_probs=65.6
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceec-cccccCCCCCCccceeeecccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYT-NWCEAMSTYPRTYDLIHADSVF 542 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~-~~~e~~~~yp~t~Dlih~~~~f 542 (626)
-.+|||+|||.|.++.++++.. .-.+|+.+|.++.+++.+.++ ++ +.+.. +.-+.+...+.+||.|.+....
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~ 98 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSG 98 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcc
Confidence 3589999999999999998761 114789999998888876432 33 12221 1111111224789999885432
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
. .++.++.++.|+|+|||++++.
T Consensus 99 ~------~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 99 G------LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred h------hHHHHHHHHHHHcCCCCEEEEE
Confidence 2 3468999999999999999985
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.5e-06 Score=86.17 Aligned_cols=146 Identities=16% Similarity=0.252 Sum_probs=110.2
Q ss_pred HhhhhcCCCCCceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhcc-----cceeccccccCCCCC-C
Q 006905 459 TMNNQLGQSGRYRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERGL-----VGTYTNWCEAMSTYP-R 531 (626)
Q Consensus 459 ~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rgl-----i~~~~~~~e~~~~yp-~ 531 (626)
.++..+.. ...++|.|+|||.|.-.+.|+.+ |. --|+++|.|.+||.-+.+|+. .|-++.|| | .
T Consensus 21 dLla~Vp~-~~~~~v~DLGCGpGnsTelL~~RwP~--A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~------p~~ 91 (257)
T COG4106 21 DLLARVPL-ERPRRVVDLGCGPGNSTELLARRWPD--AVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK------PEQ 91 (257)
T ss_pred HHHhhCCc-cccceeeecCCCCCHHHHHHHHhCCC--CeEeeccCCHHHHHHHHHhCCCCceecccHhhcC------CCC
Confidence 45555655 77999999999999999999887 22 248999999999999999987 46677777 6 8
Q ss_pred ccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEE--cChH--HHHHHHHHHHhCCCeeEEeecC--CCC-----
Q 006905 532 TYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFR--DDVD--ELVKVKRIIDALKWQSQIVDHE--DGP----- 600 (626)
Q Consensus 532 t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~--d~~~--~~~~~~~~~~~l~w~~~~~~~e--~~~----- 600 (626)
..|||.++-+|.-+.+. ..+|.-.=--|.|||.+.+. |+.+ ...-|.+.+++.-|...+-+.- -.+
T Consensus 92 ~~dllfaNAvlqWlpdH---~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a 168 (257)
T COG4106 92 PTDLLFANAVLQWLPDH---PELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPA 168 (257)
T ss_pred ccchhhhhhhhhhcccc---HHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHH
Confidence 89999999999977754 66777777789999999997 3332 4778888898888887653311 001
Q ss_pred -------CCcceEEEEEecccCC
Q 006905 601 -------LEREKLLFAVKLYWTA 616 (626)
Q Consensus 601 -------~~~e~~l~~~K~~w~~ 616 (626)
-...+|=|+.+.|-..
T Consensus 169 ~Yy~lLa~~~~rvDiW~T~Y~h~ 191 (257)
T COG4106 169 AYYELLAPLACRVDIWHTTYYHQ 191 (257)
T ss_pred HHHHHhCcccceeeeeeeecccc
Confidence 0135677777777654
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.2e-06 Score=92.87 Aligned_cols=103 Identities=15% Similarity=0.090 Sum_probs=71.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEcccccCC----CCCCCeeEEE
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAERLP----YPSRAFDMAH 280 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~~Lp----f~d~sFDlV~ 280 (626)
++.+|||+|||+|..+..+++. .++++|+++..+...+ +.+...|+. +.+...|+..++ +..++||.|+
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~-~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQ-ENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHH-HHHHHcCCCeEEEEeCChhhcccccccccccCCEEE
Confidence 3558999999999998888764 4888898776554433 334445653 566667776665 4467899999
Q ss_pred ec------cccccccc---------------cHHHHHHHHHhcccCCeEEEEEeC
Q 006905 281 CS------RCLIPWNQ---------------FGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 281 ~~------~~l~h~~~---------------~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+. .++.+-++ .+..+|.++.++|||||+++.++-
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystc 385 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATC 385 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 62 12211111 025789999999999999999864
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=7.5e-06 Score=80.88 Aligned_cols=112 Identities=15% Similarity=0.158 Sum_probs=72.9
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceec-cccccCCCCCCccceeeecccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYT-NWCEAMSTYPRTYDLIHADSVF 542 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~-~~~e~~~~yp~t~Dlih~~~~f 542 (626)
-.+|||+|||+|.++..++... -...|+.+|.++.++..+.++ |+ +.+++ |..+.+...+..+|.++...
T Consensus 41 ~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~-- 117 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG-- 117 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC--
Confidence 4579999999999998886431 012688999988898877653 43 22332 11111222223456665421
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh-HHHHHHHHHHHhCCC
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIFRDDV-DELVKVKRIIDALKW 589 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~-~~~~~~~~~~~~l~w 589 (626)
...++.++.++.|+|+|||++++.... +.+..+.+.++.+.+
T Consensus 118 -----~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~ 160 (196)
T PRK07402 118 -----GRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQA 160 (196)
T ss_pred -----CcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCC
Confidence 235789999999999999999997543 345556666666543
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.3e-06 Score=86.40 Aligned_cols=119 Identities=14% Similarity=0.278 Sum_probs=78.8
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc-cceec-cccccCCCCC-Cccceeeeccccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL-VGTYT-NWCEAMSTYP-RTYDLIHADSVFS 543 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl-i~~~~-~~~e~~~~yp-~t~Dlih~~~~f~ 543 (626)
..|||+|||.|.++..++..+. -+|+.+|.++.++..+.++ |+ +-+++ |+.+ ..+ .+||+|.++--|.
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~---~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR---AVEFRPFDVVVSNPPYV 112 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh---hccCCCeeEEEECCCCC
Confidence 5799999999999999988753 3788999998888876653 33 22222 3322 234 7999999975433
Q ss_pred cCCC------------------CCCHHHHHHHhhhhccCCcEEEEEcC-hHHHHHHHHHHHhCCCeeEEe
Q 006905 544 LYKD------------------RCETEDILLEMDRILRPEGGVIFRDD-VDELVKVKRIIDALKWQSQIV 594 (626)
Q Consensus 544 ~~~~------------------~c~~~~~l~E~dRiLRPgG~~i~~d~-~~~~~~~~~~~~~l~w~~~~~ 594 (626)
.... ...++.++.++.|+|||||.+++... ......+.+.+++-.|+....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 182 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAEVV 182 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeEEE
Confidence 2110 11256688899999999999998422 223445555566666665544
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.2e-06 Score=85.96 Aligned_cols=119 Identities=20% Similarity=0.285 Sum_probs=83.3
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceeccccccCCCCC-Cccceeeeccccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYTNWCEAMSTYP-RTYDLIHADSVFS 543 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~~~~e~~~~yp-~t~Dlih~~~~f~ 543 (626)
.+|||+|||.|.++.++++..- ..+++.+|.++.++..+.++ |+ +.+++ +..+..++ .+||+|.++--|.
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~--~d~~~~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLDNVTFLQ--SDWFEPLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEE--CchhccCcCCceeEEEECCCCC
Confidence 4799999999999999987611 12788999988888877654 33 22233 12223455 8999999865444
Q ss_pred cCC------CCC-----------------CHHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHhCCCeeE
Q 006905 544 LYK------DRC-----------------ETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 544 ~~~------~~c-----------------~~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~l~w~~~ 592 (626)
... ... ....++.++.|+|+|||.+++.........+++++++..++..
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~v 237 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFADV 237 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCce
Confidence 211 000 0235788999999999999998766667788888888777644
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.1e-06 Score=93.24 Aligned_cols=121 Identities=14% Similarity=0.083 Sum_probs=80.4
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceec-cccccCCCCC-Cccceeeeccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYT-NWCEAMSTYP-RTYDLIHADSV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~-~~~e~~~~yp-~t~Dlih~~~~ 541 (626)
-..+||+|||.|.|...|+.+. --.|++++|.+..++..+.++ |+ +-+++ |.-+-+..+| .++|.|++..-
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 4579999999999999999762 123899999998887766544 44 22233 2222223456 89999998522
Q ss_pred cccCCCC---CCHHHHHHHhhhhccCCcEEEE-EcChHHHHHHHHHHHhC-CCee
Q 006905 542 FSLYKDR---CETEDILLEMDRILRPEGGVIF-RDDVDELVKVKRIIDAL-KWQS 591 (626)
Q Consensus 542 f~~~~~~---c~~~~~l~E~dRiLRPgG~~i~-~d~~~~~~~~~~~~~~l-~w~~ 591 (626)
....+.+ =..+.+|.|+.|+|+|||.+.+ +|..+....+.+.+... +++.
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~ 256 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKI 256 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCcee
Confidence 2211211 1226799999999999999988 57777666666655444 4444
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.8e-06 Score=94.54 Aligned_cols=103 Identities=16% Similarity=0.184 Sum_probs=70.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEcccccCCCCCCCeeEEEec--
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAERLPYPSRAFDMAHCS-- 282 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~~Lpf~d~sFDlV~~~-- 282 (626)
++.+|||+|||+|..+..+++. .++++|+++..+.... +.+...|+. +.+...|+..++ ++++||+|++.
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~-~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~P 327 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIR-SHASALGITIIETIEGDARSFS-PEEQPDAILLDAP 327 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHH-HHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCC
Confidence 3568999999999888777652 5889999886665433 344455654 456667766655 45789999952
Q ss_pred --cc--cc-----cccc----------cHHHHHHHHHhcccCCeEEEEEeCC
Q 006905 283 --RC--LI-----PWNQ----------FGGIYLIEVDRVLRPGGYWILSGPP 315 (626)
Q Consensus 283 --~~--l~-----h~~~----------~~~~~L~Ei~RvLKPGG~lvis~pp 315 (626)
.. +. .|.. .+..+|.++.++|||||++++++-.
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs 379 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCS 379 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 11 10 1111 1236899999999999999998643
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.9e-06 Score=86.33 Aligned_cols=95 Identities=15% Similarity=0.128 Sum_probs=68.4
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIP 287 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h 287 (626)
..+|||+|||+|.++..++.+ .++++|+++ .+++.++++...+.+...|...+. .+.+||+|+++..+++
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp-----~al~~Ar~n~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~ 138 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNP-----EFARIGKRLLPEAEWITSDVFEFE-SNEKFDVVISNPPFGK 138 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCH-----HHHHHHHHhCcCCEEEECchhhhc-ccCCCcEEEEcCCccc
Confidence 458999999999998887663 577887765 455566555445667777776654 3468999999998866
Q ss_pred cccc-------------------HHHHHHHHHhcccCCeEEEEE
Q 006905 288 WNQF-------------------GGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 288 ~~~~-------------------~~~~L~Ei~RvLKPGG~lvis 312 (626)
.... ...++..+.++|+|+|.+.+.
T Consensus 139 l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 139 INTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred cCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 4321 135667888999999977775
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.8e-06 Score=89.61 Aligned_cols=104 Identities=13% Similarity=0.152 Sum_probs=70.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEcccccCCCCCCCeeEEEecc-
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAERLPYPSRAFDMAHCSR- 283 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~~Lpf~d~sFDlV~~~~- 283 (626)
++.+|||+|||+|..+..+++. .|+++|+++..+..... .+...++. +.+...|...++...+.||.|++..
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~-n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIA-NINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAP 149 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHH-HHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCC
Confidence 3558999999999999887763 58888887765544333 33344543 4556666666665556799999622
Q ss_pred -----cccc-------ccc--------cHHHHHHHHHhcccCCeEEEEEeCC
Q 006905 284 -----CLIP-------WNQ--------FGGIYLIEVDRVLRPGGYWILSGPP 315 (626)
Q Consensus 284 -----~l~h-------~~~--------~~~~~L~Ei~RvLKPGG~lvis~pp 315 (626)
++.+ |.. ....+|.++.++|||||+++.++-.
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 1100 111 1235899999999999999998643
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.8e-06 Score=84.22 Aligned_cols=95 Identities=13% Similarity=0.143 Sum_probs=61.0
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceec-cccccCC-------CCC-Cccceeeeccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYT-NWCEAMS-------TYP-RTYDLIHADSV 541 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~-~~~e~~~-------~yp-~t~Dlih~~~~ 541 (626)
.+|||+|||+|+++..+++..--.-.|+.+|.++ +.++ .++ -+++ |.. ... .++ .+||+|.|+..
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~~~---~~v-~~i~~D~~-~~~~~~~i~~~~~~~~~D~V~S~~~ 126 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MDPI---VGV-DFLQGDFR-DELVLKALLERVGDSKVQVVMSDMA 126 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-ccCC---CCc-EEEecCCC-ChHHHHHHHHHhCCCCCCEEecCCC
Confidence 4799999999999998877621112578888773 3221 222 2222 221 111 133 78999999765
Q ss_pred cccCCCCC-C-------HHHHHHHhhhhccCCcEEEEE
Q 006905 542 FSLYKDRC-E-------TEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 542 f~~~~~~c-~-------~~~~l~E~dRiLRPgG~~i~~ 571 (626)
........ + .+.+|.|+.|+|||||.|++.
T Consensus 127 ~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 127 PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 44332211 1 256899999999999999995
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.5e-06 Score=84.19 Aligned_cols=93 Identities=13% Similarity=0.113 Sum_probs=63.9
Q ss_pred CCEEEEeCCCCchHHHHHhhC-------CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEeccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-------NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRC 284 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-------~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~ 284 (626)
..+|||+|||+|.++..++++ .++++|+++ .+++.|+++...+.+...|....++ +++||+|+++.-
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~-----~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPP 123 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNH-----TYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPP 123 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCH-----HHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCC
Confidence 458999999999999877653 577777755 4555665554456677777765554 568999999886
Q ss_pred cccccc----------c-HHHHHHHHHhcccCCeEEEE
Q 006905 285 LIPWNQ----------F-GGIYLIEVDRVLRPGGYWIL 311 (626)
Q Consensus 285 l~h~~~----------~-~~~~L~Ei~RvLKPGG~lvi 311 (626)
+..... . ...++..+.|++++|+. |+
T Consensus 124 Y~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 124 FGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred CCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 642210 0 13578888887777775 55
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.2e-06 Score=81.32 Aligned_cols=120 Identities=18% Similarity=0.212 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHhh-hh----cCCCCCceeEEeccCchhhHhhhhhC-CCeEEEEeccCccCcccHHHHHHhcc------
Q 006905 448 ELWKKRLSYYKTMN-NQ----LGQSGRYRNILDMNAHLGGFAAALID-FPVWVMNVVPAEAKINTLGVIYERGL------ 515 (626)
Q Consensus 448 ~~w~~~v~~y~~~~-~~----~~~~~~~r~vlD~g~g~G~faa~l~~-~~v~~mnv~~~~~~~~~l~~~~~rgl------ 515 (626)
..+...++.|+.-+ .. ++. ..--.||.+|||+|.-=-++-. .+. +|+.+|.+++|-+++-.+--
T Consensus 51 ~~yne~~~~ykrelFs~i~~~~gk-~~K~~vLEvgcGtG~Nfkfy~~~p~~---svt~lDpn~~mee~~~ks~~E~k~~~ 126 (252)
T KOG4300|consen 51 SIYNEIADSYKRELFSGIYYFLGK-SGKGDVLEVGCGTGANFKFYPWKPIN---SVTCLDPNEKMEEIADKSAAEKKPLQ 126 (252)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhcc-cCccceEEecccCCCCcccccCCCCc---eEEEeCCcHHHHHHHHHHHhhccCcc
Confidence 55566666676532 21 333 3344589999999964444432 333 78889999899988765543
Q ss_pred cc-eeccccccCCCCC-CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh
Q 006905 516 VG-TYTNWCEAMSTYP-RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV 574 (626)
Q Consensus 516 i~-~~~~~~e~~~~yp-~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~ 574 (626)
+. .+|.-.|.+...+ .+||.|.|..++..-+ +...+|.|+.|||||||.+|+-+..
T Consensus 127 ~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve---~~~k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 127 VERFVVADGENLPQLADGSYDTVVCTLVLCSVE---DPVKQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred eEEEEeechhcCcccccCCeeeEEEEEEEeccC---CHHHHHHHHHHhcCCCcEEEEEecc
Confidence 22 4555567777777 9999999988887655 4588999999999999999998754
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.6e-06 Score=84.64 Aligned_cols=99 Identities=16% Similarity=0.225 Sum_probs=78.5
Q ss_pred CEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccC-C--CCCCCeeEEEeccc
Q 006905 213 RTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERL-P--YPSRAFDMAHCSRC 284 (626)
Q Consensus 213 ~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~L-p--f~d~sFDlV~~~~~ 284 (626)
..+||||||.|.+...+|++ +++++++...- -....+.+.+.++ ++.+...|+..+ + +++++.|-|+.++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~-v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPG-VAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHH-HHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 37999999999999999997 78999987743 3456667778888 777777775443 2 45669999999775
Q ss_pred cccccccH--------HHHHHHHHhcccCCeEEEEEe
Q 006905 285 LIPWNQFG--------GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 285 l~h~~~~~--------~~~L~Ei~RvLKPGG~lvis~ 313 (626)
= +|+... ..++..+.++|+|||.|.+.+
T Consensus 129 D-PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 D-PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred C-CCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 4 776543 479999999999999999984
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.6e-06 Score=91.65 Aligned_cols=102 Identities=12% Similarity=0.220 Sum_probs=71.2
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHH----hcccceeccccccCC--CCCCccceeeeccc
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYE----RGLVGTYTNWCEAMS--TYPRTYDLIHADSV 541 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~----rgli~~~~~~~e~~~--~yp~t~Dlih~~~~ 541 (626)
...+.|||+|||.|.++.+++++. -..+++.+|.+ .+++.+.+ .|+-+-++-.+.+|. .+| .+|+|...++
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~~-~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~~~~~ 224 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNLP-GAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLFCRI 224 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEecH-HHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEEeEhh
Confidence 446799999999999999998762 11266777775 77776644 355322222223443 345 4799888787
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
+.++... ....+|.++.|+|||||.++|-|.
T Consensus 225 lh~~~~~-~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 225 LYSANEQ-LSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hhcCChH-HHHHHHHHHHHhcCCCCEEEEEEe
Confidence 7766532 346799999999999999999864
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.24 E-value=5.2e-06 Score=86.98 Aligned_cols=136 Identities=19% Similarity=0.183 Sum_probs=91.8
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc---cceec-cccccCCCCC-Cccceeeecc-
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL---VGTYT-NWCEAMSTYP-RTYDLIHADS- 540 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~-~~~e~~~~yp-~t~Dlih~~~- 540 (626)
.+|||+|||+|.++.+|+... -..+|+.+|.++.++.++.+. |+ +.+++ ||.+. .+ ..||+|.++-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~---~~~~~fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP---LAGQKIDIIVSNPP 191 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc---CcCCCccEEEECCC
Confidence 579999999999999998752 112789999998999888774 33 23333 55543 34 4899999861
Q ss_pred ------------ccccCCCC---------CCHHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHH-hCCCeeEEeecCC
Q 006905 541 ------------VFSLYKDR---------CETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIID-ALKWQSQIVDHED 598 (626)
Q Consensus 541 ------------~f~~~~~~---------c~~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~-~l~w~~~~~~~e~ 598 (626)
++.+.... -.+..++.+..++|+|||++++--..+.-..+++++. ...|....+ ..|
T Consensus 192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~-~~D 270 (284)
T TIGR00536 192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVEN-GRD 270 (284)
T ss_pred CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEE-ecC
Confidence 11111110 0245689999999999999999777666677888776 466753221 233
Q ss_pred CCCCcceEEEEEec
Q 006905 599 GPLEREKLLFAVKL 612 (626)
Q Consensus 599 ~~~~~e~~l~~~K~ 612 (626)
-.+.++++++++.
T Consensus 271 -~~g~~R~~~~~~~ 283 (284)
T TIGR00536 271 -LNGKERVVLGFYH 283 (284)
T ss_pred -CCCCceEEEEEec
Confidence 3356888888753
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.7e-06 Score=91.18 Aligned_cols=104 Identities=17% Similarity=0.185 Sum_probs=71.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEcccccCC-CCCCCeeEEEecc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAERLP-YPSRAFDMAHCSR 283 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~~Lp-f~d~sFDlV~~~~ 283 (626)
++.+|||+|||+|..+.++++. .++++|+++..+.... +.+.+.|+. +.+...|...++ +.+++||.|++..
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~-~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~Da 315 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVE-KHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDA 315 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHH-HHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECC
Confidence 3558999999999888877763 5889999886665433 334455654 456677776665 4567899999621
Q ss_pred -c--ccccc------------------ccHHHHHHHHHhcccCCeEEEEEeCC
Q 006905 284 -C--LIPWN------------------QFGGIYLIEVDRVLRPGGYWILSGPP 315 (626)
Q Consensus 284 -~--l~h~~------------------~~~~~~L~Ei~RvLKPGG~lvis~pp 315 (626)
| +..+. ..+..+|.++.++|||||.+++++-.
T Consensus 316 PCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 316 PCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred CCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 1 10111 01246789999999999999998643
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.7e-06 Score=85.90 Aligned_cols=127 Identities=12% Similarity=0.117 Sum_probs=89.1
Q ss_pred eeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhcc---cceec-cccccCCC-CCCccceeeecccccc
Q 006905 471 RNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERGL---VGTYT-NWCEAMST-YPRTYDLIHADSVFSL 544 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rgl---i~~~~-~~~e~~~~-yp~t~Dlih~~~~f~~ 544 (626)
.+|||+|||+|.++..|++. +- .+|+.+|.++.+++.+.+.-- +.+++ |+.+.+.. +...||+|-++-=+..
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~--~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDG--IELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 47999999999999998754 21 268889999899987765421 12332 44333221 2357999998753321
Q ss_pred C-------------CCCCC----------HHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHhCCCeeEEeecCCC
Q 006905 545 Y-------------KDRCE----------TEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQIVDHEDG 599 (626)
Q Consensus 545 ~-------------~~~c~----------~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~l~w~~~~~~~e~~ 599 (626)
. ..+.. +..++..+.++|+|||.+++--..+....+..++....|+..+..|++-
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~~~ 243 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSEEL 243 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEcccc
Confidence 0 00111 3468888899999999999976666778899999999999999888865
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.5e-06 Score=87.58 Aligned_cols=121 Identities=20% Similarity=0.196 Sum_probs=81.4
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc---cceec-cccccCCCCC-Cccceeeecc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL---VGTYT-NWCEAMSTYP-RTYDLIHADS 540 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~-~~~e~~~~yp-~t~Dlih~~~ 540 (626)
..+|||+|||+|.++.+|++..- -.+|+.+|.++.++..+.++ |+ +.+++ |+ +..+| .+||+|.++-
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~---~~~~~~~~fD~Iv~NP 197 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDL---FAALPGRKYDLIVSNP 197 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch---hhccCCCCccEEEECC
Confidence 35799999999999999987521 12789999999999888765 44 33333 22 23445 6899999862
Q ss_pred ccc-------------cCC--------CC-CCHHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHhCCCeeEEee
Q 006905 541 VFS-------------LYK--------DR-CETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQIVD 595 (626)
Q Consensus 541 ~f~-------------~~~--------~~-c~~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~l~w~~~~~~ 595 (626)
=+. +.. +. -.+..++.++.++|+|||++++--..+. ..+++++....|.-.-++
T Consensus 198 Py~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~~~~~~ 273 (284)
T TIGR03533 198 PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFTWLEFE 273 (284)
T ss_pred CCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCceeeec
Confidence 111 000 00 0125688999999999999998654433 688888876655544444
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.3e-06 Score=89.06 Aligned_cols=98 Identities=17% Similarity=0.224 Sum_probs=79.1
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-----cc----eeccccccCCCCCCccceeeecc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-----VG----TYTNWCEAMSTYPRTYDLIHADS 540 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-----i~----~~~~~~e~~~~yp~t~Dlih~~~ 540 (626)
-++|||+|||.|-....|+..+. +|+++|.+..++++|-+.-- .+ .+---|+.....-..||.|.|+.
T Consensus 90 g~~ilDvGCGgGLLSepLArlga---~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcse 166 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA---QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSE 166 (282)
T ss_pred CceEEEeccCccccchhhHhhCC---eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHH
Confidence 47799999999999999999997 89999999999999988732 11 01111344444445699999999
Q ss_pred ccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 541 VFSLYKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 541 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
++.|.. +.+.++.-+-+.|+|||.++|++-
T Consensus 167 vleHV~---dp~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 167 VLEHVK---DPQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred HHHHHh---CHHHHHHHHHHHhCCCCceEeeeh
Confidence 999988 558899999999999999999854
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.6e-05 Score=83.40 Aligned_cols=98 Identities=21% Similarity=0.239 Sum_probs=66.0
Q ss_pred EEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCCCCCCCeeEEEeccccccc
Q 006905 214 TAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLPYPSRAFDMAHCSRCLIPW 288 (626)
Q Consensus 214 ~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~ 288 (626)
+|||+|||+|..+..++.. .|+++|+++..+. .+.+.+...++ ...+...| -+.--.+.||+|+||.-.++-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~-~A~~Na~~~~l~~~~~~~~d--lf~~~~~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALA-LARENAERNGLVRVLVVQSD--LFEPLRGKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHH-HHHHHHHHcCCccEEEEeee--cccccCCceeEEEeCCCCCCC
Confidence 7999999999999999886 6889999885443 33344555564 22233222 122113489999998765443
Q ss_pred c----------ccH--------------HHHHHHHHhcccCCeEEEEEeC
Q 006905 289 N----------QFG--------------GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 289 ~----------~~~--------------~~~L~Ei~RvLKPGG~lvis~p 314 (626)
. .++ ..++.++.+.|+|||.+++...
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 2 011 2678889999999999999753
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.3e-06 Score=85.96 Aligned_cols=91 Identities=19% Similarity=0.137 Sum_probs=63.0
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceeccccccCCCCC--Cccceeeeccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYTNWCEAMSTYP--RTYDLIHADSV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~~~~e~~~~yp--~t~Dlih~~~~ 541 (626)
-.+|||+|||+|.+++.|++.---.-.|+.+|.++++++.+.++ |+ +.+.+ +..+..++ ..||+|++...
T Consensus 77 g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~--gd~~~~~~~~~~fD~I~~~~~ 154 (212)
T PRK13942 77 GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIV--GDGTLGYEENAPYDRIYVTAA 154 (212)
T ss_pred cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEE--CCcccCCCcCCCcCEEEECCC
Confidence 46899999999999988875410012578888888899887765 33 22333 22333344 78999998543
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
+ +.+..++.+.|||||.+++-
T Consensus 155 ~---------~~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 155 G---------PDIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred c---------ccchHHHHHhhCCCcEEEEE
Confidence 3 34455777899999999985
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.8e-06 Score=85.09 Aligned_cols=102 Identities=10% Similarity=0.084 Sum_probs=65.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcC----CCeEEEEccccc-CCCCCCCeeEEEe
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERG----VPALIGVLAAER-LPYPSRAFDMAHC 281 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg----~~~~~~v~d~~~-Lpf~d~sFDlV~~ 281 (626)
..++||+||||+|.++..+++. .++++|+++..+..+...+....+ ..+.+...|... +....++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 3559999999999999888765 478888877444433322211111 224444445322 2223568999998
Q ss_pred cccccccccc----HHHHHHHHHhcccCCeEEEEEe
Q 006905 282 SRCLIPWNQF----GGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 282 ~~~l~h~~~~----~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
.... +.... ...+++.+.++|+|||.+++..
T Consensus 152 D~~~-~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 152 DSTD-PVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred eCCC-CCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 6542 22211 2578899999999999999874
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.1e-06 Score=86.76 Aligned_cols=96 Identities=13% Similarity=0.062 Sum_probs=73.7
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHH-HHhcccce--------------eccccccCCCCC----C
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVI-YERGLVGT--------------YTNWCEAMSTYP----R 531 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~-~~rgli~~--------------~~~~~e~~~~yp----~ 531 (626)
.+|||.|||.|.-+.+|+++|. +|+++|.++..++.+ .++|+... ++-++..+..++ .
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 4799999999999999999998 899999998888864 46666321 122445555542 5
Q ss_pred ccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEE
Q 006905 532 TYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIF 570 (626)
Q Consensus 532 t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~ 570 (626)
+||+|....+|.+... ...+.++..|.++|+|||++++
T Consensus 116 ~fd~v~D~~~~~~l~~-~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 116 DVDAVYDRAALIALPE-EMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CeeEEEehHhHhhCCH-HHHHHHHHHHHHHcCCCCeEEE
Confidence 8999998888887643 3557899999999999996444
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=7e-06 Score=91.35 Aligned_cols=101 Identities=15% Similarity=0.150 Sum_probs=68.6
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEcccccCC--CCCCCeeEEEecc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAERLP--YPSRAFDMAHCSR 283 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~~Lp--f~d~sFDlV~~~~ 283 (626)
+.+|||+|||+|..+..+++. .++++|+++..+.... +.+...|+. +.+...|...++ ++ ++||+|++..
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~-~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~ 328 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIE-ENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVDA 328 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEcC
Confidence 458999999999999888764 5888988775554333 334445553 566667765543 33 7899999743
Q ss_pred ccc------c-----cccc----------HHHHHHHHHhcccCCeEEEEEeC
Q 006905 284 CLI------P-----WNQF----------GGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 284 ~l~------h-----~~~~----------~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
... + |... ...+|.++.++|||||.+++++-
T Consensus 329 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystc 380 (444)
T PRK14902 329 PCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTC 380 (444)
T ss_pred CCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 210 0 1100 13579999999999999998754
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.2e-06 Score=70.68 Aligned_cols=96 Identities=22% Similarity=0.295 Sum_probs=68.4
Q ss_pred eEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHH---hcc---cceeccccccCCC-CCCccceeeecccccc
Q 006905 472 NILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYE---RGL---VGTYTNWCEAMST-YPRTYDLIHADSVFSL 544 (626)
Q Consensus 472 ~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~---rgl---i~~~~~~~e~~~~-yp~t~Dlih~~~~f~~ 544 (626)
+|+|+|||.|+++..+++.+ ..++..+|.+++.+..+.+ .+. +..++.-...+.. -+..||+|.+...+..
T Consensus 1 ~ildig~G~G~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGP--GARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 48999999999999998832 2477888888777666651 121 2333321222222 2488999999888887
Q ss_pred CCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 545 YKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 545 ~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
. .-....++..+.++|||||.+++.
T Consensus 79 ~--~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 L--VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred h--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 3 125578999999999999999987
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.2e-05 Score=89.49 Aligned_cols=112 Identities=13% Similarity=0.137 Sum_probs=74.6
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEccccc----C
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAER----L 269 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~----L 269 (626)
..+.+.+.+... ++.+|||+|||+|.++..|++. .++++|+++.++..+.. .+...++ ++.+..+|+.. +
T Consensus 285 l~~~vl~~l~~~--~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~-n~~~~~~~~v~~~~~d~~~~l~~~ 361 (443)
T PRK13168 285 MVARALEWLDPQ--PGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARE-NARRNGLDNVTFYHANLEEDFTDQ 361 (443)
T ss_pred HHHHHHHHhcCC--CCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHH-HHHHcCCCceEEEEeChHHhhhhh
Confidence 334444444333 3458999999999999999886 68888888766654443 3334454 46677777543 3
Q ss_pred CCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 006905 270 PYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPPI 316 (626)
Q Consensus 270 pf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~pp~ 316 (626)
++.+++||+|+++... .. ....+..+.+ ++|++.++++..|.
T Consensus 362 ~~~~~~fD~Vi~dPPr---~g-~~~~~~~l~~-~~~~~ivyvSCnp~ 403 (443)
T PRK13168 362 PWALGGFDKVLLDPPR---AG-AAEVMQALAK-LGPKRIVYVSCNPA 403 (443)
T ss_pred hhhcCCCCEEEECcCC---cC-hHHHHHHHHh-cCCCeEEEEEeChH
Confidence 4556789999997743 22 2345555555 69999999997644
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=7.2e-06 Score=87.00 Aligned_cols=113 Identities=21% Similarity=0.205 Sum_probs=76.1
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc---cceec-cccccCCCCC-Cccceeeeccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL---VGTYT-NWCEAMSTYP-RTYDLIHADSV 541 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~-~~~e~~~~yp-~t~Dlih~~~~ 541 (626)
.+|||+|||+|.++.+|+... -..+|+.+|.++.++..+.++ |+ +.+++ |+. ...| .+||+|.++-=
T Consensus 135 ~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~---~~l~~~~fDlIvsNPP 210 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLF---AALPGRRYDLIVSNPP 210 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchh---hhCCCCCccEEEECCC
Confidence 579999999999999998752 123789999999999987765 43 33443 332 3345 68999998621
Q ss_pred c-------------ccCCCC---------CCHHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHhCC
Q 006905 542 F-------------SLYKDR---------CETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALK 588 (626)
Q Consensus 542 f-------------~~~~~~---------c~~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~l~ 588 (626)
+ .+.... -.+..++.++.++|+|||.+++--..+ ...+.+++....
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~~ 278 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDVP 278 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhCC
Confidence 1 111100 013468999999999999999954333 345777766543
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.2e-05 Score=74.86 Aligned_cols=99 Identities=17% Similarity=0.044 Sum_probs=68.0
Q ss_pred CCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCe-EEEEcccc-cCCCCCCCeeEEEe
Q 006905 208 NDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPA-LIGVLAAE-RLPYPSRAFDMAHC 281 (626)
Q Consensus 208 ~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~-~~~v~d~~-~Lpf~d~sFDlV~~ 281 (626)
...++..++|||||+|+.+..++.. .++++|-++..+.... +.+++.|++. .+..+++. .|+-.+ +||.|+.
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~-~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiFI 108 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIE-RNAARFGVDNLEVVEGDAPEALPDLP-SPDAIFI 108 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHH-HHHHHhCCCcEEEEeccchHhhcCCC-CCCEEEE
Confidence 4444559999999999999998832 6888887664333222 3344445553 44444433 333222 7999998
Q ss_pred ccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 282 SRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 282 ~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
.... ....+|..+...|||||.+++..
T Consensus 109 GGg~-----~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 109 GGGG-----NIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred CCCC-----CHHHHHHHHHHHcCcCCeEEEEe
Confidence 7752 35789999999999999999974
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.1e-05 Score=86.69 Aligned_cols=111 Identities=14% Similarity=0.087 Sum_probs=72.3
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHH------------cCCCeE
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALE------------RGVPAL 260 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~e------------rg~~~~ 260 (626)
|.+.|....-......++||+||||+|..+..+++. .++++|+++ .+++.|++ ....+.
T Consensus 136 YHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDp-----eVIelAr~~~~L~~~~~~~~~DpRV~ 210 (374)
T PRK01581 136 YHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDG-----SMINMARNVPELVSLNKSAFFDNRVN 210 (374)
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCH-----HHHHHHHhccccchhccccCCCCceE
Confidence 444454433223344569999999999988888875 577888766 44445543 123456
Q ss_pred EEEccccc-CCCCCCCeeEEEecccccccc---cc--HHHHHHHHHhcccCCeEEEEEe
Q 006905 261 IGVLAAER-LPYPSRAFDMAHCSRCLIPWN---QF--GGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 261 ~~v~d~~~-Lpf~d~sFDlV~~~~~l~h~~---~~--~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+.+.|+.. +.-..+.||+|++...- +.. .. ...++..+.+.|+|||.|++..
T Consensus 211 vvi~Da~~fL~~~~~~YDVIIvDl~D-P~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 211 VHVCDAKEFLSSPSSLYDVIIIDFPD-PATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEECcHHHHHHhcCCCccEEEEcCCC-ccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 66667444 44445789999986421 211 11 1568999999999999998864
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.1e-05 Score=84.41 Aligned_cols=159 Identities=21% Similarity=0.262 Sum_probs=104.1
Q ss_pred chhhhHHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cccce
Q 006905 443 FQQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GLVGT 518 (626)
Q Consensus 443 f~~d~~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gli~~ 518 (626)
...||+.+...+. .. +..... +|||+|||+|-.|.+|+...- ..+|+.+|.++..|.+|.+. |+..+
T Consensus 92 Pr~dTe~Lve~~l---~~---~~~~~~--~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l~~~ 162 (280)
T COG2890 92 PRPDTELLVEAAL---AL---LLQLDK--RILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGLVRV 162 (280)
T ss_pred cCCchHHHHHHHH---Hh---hhhcCC--cEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCCccE
Confidence 4567777777765 11 112022 899999999999999988732 24899999999888877544 43221
Q ss_pred eccccccCCCCCCccceeeeccccccC-------------------CCCC---CHHHHHHHhhhhccCCcEEEEEcChHH
Q 006905 519 YTNWCEAMSTYPRTYDLIHADSVFSLY-------------------KDRC---ETEDILLEMDRILRPEGGVIFRDDVDE 576 (626)
Q Consensus 519 ~~~~~e~~~~yp~t~Dlih~~~~f~~~-------------------~~~c---~~~~~l~E~dRiLRPgG~~i~~d~~~~ 576 (626)
+.--+.-|+..+..||+|.++==.--. .... -+..++.+..++|+|||++++.-..+.
T Consensus 163 ~~~~~dlf~~~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q 242 (280)
T COG2890 163 LVVQSDLFEPLRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQ 242 (280)
T ss_pred EEEeeecccccCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCc
Confidence 211123455566799998875321100 0111 223588999999999999999888777
Q ss_pred HHHHHHHHHhCCCeeEEeecCCCCCCcceEEEEEe
Q 006905 577 LVKVKRIIDALKWQSQIVDHEDGPLEREKLLFAVK 611 (626)
Q Consensus 577 ~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K 611 (626)
...+++++....+ ...+.....-.+.+.+.++++
T Consensus 243 ~~~v~~~~~~~~~-~~~v~~~~d~~g~~rv~~~~~ 276 (280)
T COG2890 243 GEAVKALFEDTGF-FEIVETLKDLFGRDRVVLAKL 276 (280)
T ss_pred HHHHHHHHHhcCC-ceEEEEEecCCCceEEEEEEe
Confidence 8899999999986 332333333335667766654
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.4e-05 Score=83.97 Aligned_cols=120 Identities=17% Similarity=0.212 Sum_probs=84.3
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceec----cccccCCCCC--Cccceeeeccccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYT----NWCEAMSTYP--RTYDLIHADSVFS 543 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~----~~~e~~~~yp--~t~Dlih~~~~f~ 543 (626)
-+||||+|||+|-+|-+.++.|+ --|+++|..+-.++.+.|.-...-++ .-+-.....| +.||+|.|+-+=.
T Consensus 163 g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA~ 240 (300)
T COG2264 163 GKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILAE 240 (300)
T ss_pred CCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhHH
Confidence 68999999999999999999887 25899999988999888865533222 1111122344 5999999922100
Q ss_pred cCCCCCCHHHHHHHhhhhccCCcEEEEEcCh-HHHHHHHHHHHhCCCeeEEeecC
Q 006905 544 LYKDRCETEDILLEMDRILRPEGGVIFRDDV-DELVKVKRIIDALKWQSQIVDHE 597 (626)
Q Consensus 544 ~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~-~~~~~~~~~~~~l~w~~~~~~~e 597 (626)
-+..+.-++-|.|||||++|+|--. +..+.+.+.+.+-.|++.-+..+
T Consensus 241 ------vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~~ 289 (300)
T COG2264 241 ------VLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLER 289 (300)
T ss_pred ------HHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEec
Confidence 1124556778999999999999644 34677788887778877654443
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.3e-05 Score=87.85 Aligned_cols=136 Identities=12% Similarity=0.122 Sum_probs=91.7
Q ss_pred eEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHh----cc-cceec-cccccCCCCCCccceeeecccccc
Q 006905 472 NILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYER----GL-VGTYT-NWCEAMSTYPRTYDLIHADSVFSL 544 (626)
Q Consensus 472 ~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~r----gl-i~~~~-~~~e~~~~yp~t~Dlih~~~~f~~ 544 (626)
+|||+|||+|.++..|+.. +- .+|+.+|.++.+++.+.++ |+ +.+++ |+.+....-...||+|.|+-=+-.
T Consensus 254 rVLDLGcGSG~IaiaLA~~~p~--a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 254 RVWDLGTGSGAVAVTVALERPD--AFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred EEEEEeChhhHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence 7999999999999988754 22 3789999999999988765 22 33333 443321111257999999653321
Q ss_pred CCC-------------------CC---CHHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHhCCCeeEEeecCCCCCC
Q 006905 545 YKD-------------------RC---ETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQIVDHEDGPLE 602 (626)
Q Consensus 545 ~~~-------------------~c---~~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~l~w~~~~~~~e~~~~~ 602 (626)
... .- .+..++.+..+.|+|||++++--..+....+++++....|....+. . .-.+
T Consensus 332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~-k-Dl~G 409 (423)
T PRK14966 332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETL-P-DLAG 409 (423)
T ss_pred cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEE-E-cCCC
Confidence 000 00 1235777888999999999987666778899999988888653221 1 1225
Q ss_pred cceEEEEEe
Q 006905 603 REKLLFAVK 611 (626)
Q Consensus 603 ~e~~l~~~K 611 (626)
.++++++++
T Consensus 410 ~dR~v~~~~ 418 (423)
T PRK14966 410 LDRVTLGKY 418 (423)
T ss_pred CcEEEEEEE
Confidence 688998875
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.4e-05 Score=79.08 Aligned_cols=99 Identities=19% Similarity=0.171 Sum_probs=67.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhCCcEEEeCCccchHHHHHHHH-HHcCC----------------CeEEEEcccccCCCCC
Q 006905 211 SIRTAIDTGCGVASWGAYLLSRNIITMSFAPRDTHEAQVQFA-LERGV----------------PALIGVLAAERLPYPS 273 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~~V~avdis~~dls~a~i~~A-~erg~----------------~~~~~v~d~~~Lpf~d 273 (626)
...+||..|||.|.-...|++++..++.+ |+++.+++.+ .+++. .+.+.++|...++-..
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~G~~VvGv---Dls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQGHDVVGV---DLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHTTEEEEEE---ES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CCCeEEEeCCCChHHHHHHHHCCCeEEEE---ecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 34589999999999999999996444444 4455566555 33332 2356677776665333
Q ss_pred -CCeeEEEeccccccccccH-HHHHHHHHhcccCCeEEEEE
Q 006905 274 -RAFDMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 274 -~sFDlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis 312 (626)
++||+|+=..+++-.+.+. ..+.+.+.++|+|||.+++.
T Consensus 114 ~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi 154 (218)
T PF05724_consen 114 VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLI 154 (218)
T ss_dssp HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 5799999766665555444 78999999999999995443
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.4e-05 Score=79.50 Aligned_cols=139 Identities=14% Similarity=0.131 Sum_probs=91.5
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccc--eeccccccCCCCCCccceeeeccc---c
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVG--TYTNWCEAMSTYPRTYDLIHADSV---F 542 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~--~~~~~~e~~~~yp~t~Dlih~~~~---f 542 (626)
+.-+-|||+|||+|--|+.|.+.+- -.+.+|.|+.||+++.+|-+-| ++.|..|.+++=|.|||-+-+... +
T Consensus 49 ~~~~~iLDIGCGsGLSg~vL~~~Gh---~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWL 125 (270)
T KOG1541|consen 49 PKSGLILDIGCGSGLSGSVLSDSGH---QWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWL 125 (270)
T ss_pred CCCcEEEEeccCCCcchheeccCCc---eEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeee
Confidence 5678899999999999999988874 3578999999999999977765 333777888877899996554222 2
Q ss_pred ccCCCCCCHH-----HHHHHhhhhccCCcEEEEEc---ChHHHHHHHHHHHhCCCee-EEeecCCCCCCcceEEEE
Q 006905 543 SLYKDRCETE-----DILLEMDRILRPEGGVIFRD---DVDELVKVKRIIDALKWQS-QIVDHEDGPLEREKLLFA 609 (626)
Q Consensus 543 ~~~~~~c~~~-----~~l~E~dRiLRPgG~~i~~d---~~~~~~~~~~~~~~l~w~~-~~~~~e~~~~~~e~~l~~ 609 (626)
.+....|+.+ ..+.-+..+|++|+..++.= +.+.++.|...+..--..- .++|.-.+..++-..||.
T Consensus 126 cnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF~GGlvVd~Pes~k~kK~yLVL 201 (270)
T KOG1541|consen 126 CNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGFGGGLVVDWPESTKNKKYYLVL 201 (270)
T ss_pred cccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhccCCceeeecccccccceeEEEE
Confidence 2322223333 24666889999999999973 3444444444333222111 244543333344445555
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.8e-05 Score=82.95 Aligned_cols=95 Identities=18% Similarity=0.126 Sum_probs=63.0
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcc----cHHHHHHh-cccceeccccccCCCC---CCccceeeecccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKIN----TLGVIYER-GLVGTYTNWCEAMSTY---PRTYDLIHADSVF 542 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~----~l~~~~~r-gli~~~~~~~e~~~~y---p~t~Dlih~~~~f 542 (626)
.+|||+|||+|+++.+|++.---.-.|..+|.+++ ++.++.+| +++.+..|-+... .| ..++|+|-++...
T Consensus 134 ~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~-~y~~~~~~vDvV~~Dva~ 212 (293)
T PTZ00146 134 SKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQ-KYRMLVPMVDVIFADVAQ 212 (293)
T ss_pred CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChh-hhhcccCCCCEEEEeCCC
Confidence 47999999999999999876100013666777754 55666554 4555555543221 12 2689999886531
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
. -....+++|+.|+|||||+|+|.
T Consensus 213 ---p--dq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 213 ---P--DQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred ---c--chHHHHHHHHHHhccCCCEEEEE
Confidence 1 13345677999999999999994
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.3e-06 Score=87.35 Aligned_cols=129 Identities=15% Similarity=0.155 Sum_probs=84.6
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceecccc--ccCCCCC-CccceeeeccccccCCC
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWC--EAMSTYP-RTYDLIHADSVFSLYKD 547 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~--e~~~~yp-~t~Dlih~~~~f~~~~~ 547 (626)
.+|||+|||+|-+|-+-++.|. -.|+++|..+..++.+.+.-...-+.+-+ ......+ ..||+|.|+-+..-
T Consensus 163 ~~vLDvG~GSGILaiaA~klGA--~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~~~~~~dlvvANI~~~v--- 237 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAAKLGA--KKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDLVEGKFDLVVANILADV--- 237 (295)
T ss_dssp SEEEEES-TTSHHHHHHHHTTB--SEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCTCCS-EEEEEEES-HHH---
T ss_pred CEEEEeCCcHHHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecccccccCCEEEECCCHHH---
Confidence 5899999999998877777776 25889999888888777765533222211 1223345 99999999444332
Q ss_pred CCCHHHHHHHhhhhccCCcEEEEEcCh-HHHHHHHHHHHhCCCeeEEeecCCCCCCcceEEEEEec
Q 006905 548 RCETEDILLEMDRILRPEGGVIFRDDV-DELVKVKRIIDALKWQSQIVDHEDGPLEREKLLFAVKL 612 (626)
Q Consensus 548 ~c~~~~~l~E~dRiLRPgG~~i~~d~~-~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K~ 612 (626)
+..++-.+.+.|+|||++|+|--. +....|.+.++. .|+......+ +.-..|+++|+
T Consensus 238 ---L~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~~----~~W~~l~~~Kk 295 (295)
T PF06325_consen 238 ---LLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEEREE----GEWVALVFKKK 295 (295)
T ss_dssp ---HHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEEE----TTEEEEEEEE-
T ss_pred ---HHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEEE----CCEEEEEEEeC
Confidence 234666778999999999998433 345667777776 7776544433 34567888775
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=4e-05 Score=76.42 Aligned_cols=132 Identities=11% Similarity=0.039 Sum_probs=77.0
Q ss_pred cCCceecCCCCCCCCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHH
Q 006905 177 EGDRFRFPGGGTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFAL 253 (626)
Q Consensus 177 ~ge~~~Fp~ggt~F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~ 253 (626)
.|..+..|.+. .+....+...+.+...+... ..+.+|||+|||+|.++..++.+ .++++|.++.....+ .+.+.
T Consensus 21 ~g~~l~~~~~~-~~Rp~~d~v~e~l~~~l~~~-~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a-~~Nl~ 97 (199)
T PRK10909 21 RGRKLPVPDSP-GLRPTTDRVRETLFNWLAPV-IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQL-IKNLA 97 (199)
T ss_pred CCCEeCCCCCC-CcCcCCHHHHHHHHHHHhhh-cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHH-HHHHH
Confidence 34455554432 22344455555555555321 12458999999999999865443 688888877433322 23333
Q ss_pred HcCC-CeEEEEccccc-CCCCCCCeeEEEeccccccccccH-HHHHHHHHh--cccCCeEEEEEeC
Q 006905 254 ERGV-PALIGVLAAER-LPYPSRAFDMAHCSRCLIPWNQFG-GIYLIEVDR--VLRPGGYWILSGP 314 (626)
Q Consensus 254 erg~-~~~~~v~d~~~-Lpf~d~sFDlV~~~~~l~h~~~~~-~~~L~Ei~R--vLKPGG~lvis~p 314 (626)
..++ .+.+...|... ++...++||+|+++..+ .... ..++..+.. +|+|+|.++++.+
T Consensus 98 ~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy---~~g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 98 TLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF---RKGLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred HhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC---CCChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 3444 35566666433 33234579999998853 2222 344554444 4899999999854
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.4e-06 Score=84.63 Aligned_cols=90 Identities=20% Similarity=0.123 Sum_probs=62.4
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceeccccccCCC-CC--Cccceeeecc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYTNWCEAMST-YP--RTYDLIHADS 540 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~~~~e~~~~-yp--~t~Dlih~~~ 540 (626)
-..|||+|||+|.+++.|++..--.-.|+.+|.++.+++.+.++ |+ +.+.+ .+... ++ ..||+|+++.
T Consensus 78 ~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~---~d~~~~~~~~~~fD~Ii~~~ 154 (215)
T TIGR00080 78 GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIV---GDGTQGWEPLAPYDRIYVTA 154 (215)
T ss_pred cCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEE---CCcccCCcccCCCCEEEEcC
Confidence 45799999999999999987521112478888888888877654 43 22333 22222 23 6899999843
Q ss_pred ccccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 541 VFSLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 541 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
. ...+..++-+.|+|||++++.
T Consensus 155 ~---------~~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 155 A---------GPKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred C---------cccccHHHHHhcCcCcEEEEE
Confidence 2 244566788999999999984
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.2e-05 Score=83.26 Aligned_cols=102 Identities=14% Similarity=0.103 Sum_probs=65.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHH----cCCCeEEEEcccccC-C-CCCCCeeEEE
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALE----RGVPALIGVLAAERL-P-YPSRAFDMAH 280 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~e----rg~~~~~~v~d~~~L-p-f~d~sFDlV~ 280 (626)
..++||+||||.|..+..+++. .++++|+++..+..+...+... ....+.+...|+... . .+++.||+|+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi 170 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII 170 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence 3678999999999999999876 4677788664333222222111 112356666664321 1 2356899999
Q ss_pred ecccccccccc----HHHHHHHHHhcccCCeEEEEEe
Q 006905 281 CSRCLIPWNQF----GGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 281 ~~~~l~h~~~~----~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+...- ++... ...+++.+.++|+|||.++...
T Consensus 171 ~D~~d-p~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 171 VDSSD-PVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EcCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 85432 32221 1468999999999999998753
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.6e-06 Score=83.24 Aligned_cols=93 Identities=18% Similarity=0.100 Sum_probs=61.9
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc---cceec-cccccCCCCCCccceeeeccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL---VGTYT-NWCEAMSTYPRTYDLIHADSV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~-~~~e~~~~yp~t~Dlih~~~~ 541 (626)
-..|||+|||+|.+++.|++.---.-.|+.+|.+++++..+.++ |+ +.+++ |..+.+. -..+||.|++...
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~-~~~~fD~Ii~~~~ 151 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE-KHAPFDAIIVTAA 151 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc-cCCCccEEEEccC
Confidence 35799999999999988875410001588899988888776543 43 22333 2222111 1279999999655
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
+. .+..|+.|+|+|||.+++-.
T Consensus 152 ~~---------~~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 152 AS---------TIPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred cc---------hhhHHHHHhcCcCcEEEEEE
Confidence 43 34458889999999999853
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.6e-06 Score=88.18 Aligned_cols=99 Identities=13% Similarity=0.160 Sum_probs=68.5
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc---ccc-----eeccccccCCCCCCcc-----ceee
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG---LVG-----TYTNWCEAMSTYPRTY-----DLIH 537 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg---li~-----~~~~~~e~~~~yp~t~-----Dlih 537 (626)
.+|||+|||+|.++..|++...-..+|+++|.|+.||+.+.++- ..+ +..|.++. ..+|..+ .++.
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~-~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQP-LALPPEPAAGRRLGFF 143 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccch-hhhhcccccCCeEEEE
Confidence 57999999999999999877210237999999999999998862 111 12222222 1234333 3555
Q ss_pred eccccccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 538 ADSVFSLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 538 ~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
++..|.+.. +-+...+|.++.++|+|||.++|.
T Consensus 144 ~gs~~~~~~-~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 144 PGSTIGNFT-PEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred ecccccCCC-HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 556666654 234567999999999999999985
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=98.09 E-value=4e-06 Score=81.13 Aligned_cols=113 Identities=19% Similarity=0.263 Sum_probs=74.3
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceeccccccCCCCC-Cccceeeecccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYTNWCEAMSTYP-RTYDLIHADSVF 542 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~~~~e~~~~yp-~t~Dlih~~~~f 542 (626)
-.+|||+|||+|-.+.+|+++.- ...|+.+|.+++.++.+.+. ++ +.++ ++.-+...+ ..||+|-++-=|
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~--~~d~~~~~~~~~fD~Iv~NPP~ 108 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGP-DAKVTAVDINPDALELAKRNAERNGLENVEVV--QSDLFEALPDGKFDLIVSNPPF 108 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTST-CEEEEEEESBHHHHHHHHHHHHHTTCTTEEEE--ESSTTTTCCTTCEEEEEE---S
T ss_pred CCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhcCccccccc--cccccccccccceeEEEEccch
Confidence 45699999999999999988732 12588889998888877553 22 2222 334444455 999999997554
Q ss_pred ccCCC--CCCHHHHHHHhhhhccCCcEEEE--EcChHHHHHHHHHHH
Q 006905 543 SLYKD--RCETEDILLEMDRILRPEGGVIF--RDDVDELVKVKRIID 585 (626)
Q Consensus 543 ~~~~~--~c~~~~~l~E~dRiLRPgG~~i~--~d~~~~~~~~~~~~~ 585 (626)
..... ...+..++.+..++|+|||.+++ +.....-..+++++.
T Consensus 109 ~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~ 155 (170)
T PF05175_consen 109 HAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFG 155 (170)
T ss_dssp BTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred hcccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcC
Confidence 43321 12356789999999999998854 444444444555554
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.2e-05 Score=80.41 Aligned_cols=118 Identities=16% Similarity=0.309 Sum_probs=91.4
Q ss_pred CceeEEeccCchhhHhhhhhCC-C-eEEEEeccCccCcccHHHHHHhc----c---cceeccccccCCCC----C-Cccc
Q 006905 469 RYRNILDMNAHLGGFAAALIDF-P-VWVMNVVPAEAKINTLGVIYERG----L---VGTYTNWCEAMSTY----P-RTYD 534 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~-~-v~~mnv~~~~~~~~~l~~~~~rg----l---i~~~~~~~e~~~~y----p-~t~D 534 (626)
....|||+|||.|..+-.|+++ + + -|+.++.++.+.+.|.+-= + |.++| .++..| + .+||
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a---~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~---~Di~~~~~~~~~~~fD 117 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKA---KIVGVEIQEEAAEMAQRNVALNPLEERIQVIE---ADIKEFLKALVFASFD 117 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCC---cEEEEEeCHHHHHHHHHHHHhCcchhceeEeh---hhHHHhhhcccccccC
Confidence 3788999999999999999887 3 4 6788888866666554321 1 44555 233332 3 5799
Q ss_pred eeeeccccc---------------cCCCCCCHHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHhCCCeeE
Q 006905 535 LIHADSVFS---------------LYKDRCETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 535 lih~~~~f~---------------~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~l~w~~~ 592 (626)
+|-|+==|- +++-.|++++++.=..++|||||++.+--+.+.+..+..++++++|..+
T Consensus 118 ~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k 190 (248)
T COG4123 118 LIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPK 190 (248)
T ss_pred EEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCce
Confidence 999976553 2334588999999999999999999999999999999999999999987
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.3e-05 Score=90.57 Aligned_cols=134 Identities=17% Similarity=0.306 Sum_probs=90.2
Q ss_pred ceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHh----cc---cceec-cccccCCCCC-Cccceeeec
Q 006905 470 YRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYER----GL---VGTYT-NWCEAMSTYP-RTYDLIHAD 539 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~-~~~e~~~~yp-~t~Dlih~~ 539 (626)
..+|||+|||+|.++.+|+.. +- ..|+.+|.++.+++++.+. |+ +.+++ |+ +...+ +.||+|.|+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~--~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~---~~~~~~~~fDlIvsN 213 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPN--ANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNW---FENIEKQKFDFIVSN 213 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHHcCCccceeeeecch---hhhCcCCCccEEEEC
Confidence 357999999999999988754 22 3789999998999988876 43 22232 33 33344 689999985
Q ss_pred cccccC--------------------CCC---CCHHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHhCCCeeEEeec
Q 006905 540 SVFSLY--------------------KDR---CETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQIVDH 596 (626)
Q Consensus 540 ~~f~~~--------------------~~~---c~~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~l~w~~~~~~~ 596 (626)
-=+-.. ... ..+..++.++.++|+|||.+++--..+.-.++.+++....|+...+ .
T Consensus 214 PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~~~~g~~~~~~-~ 292 (506)
T PRK01544 214 PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLDHGYNIESV-Y 292 (506)
T ss_pred CCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHHHhcCCCceEE-E
Confidence 321110 001 1234578899999999999999766667778888888888875432 1
Q ss_pred CCCCCCcceEEEEE
Q 006905 597 EDGPLEREKLLFAV 610 (626)
Q Consensus 597 e~~~~~~e~~l~~~ 610 (626)
.|-. +.++++++.
T Consensus 293 ~D~~-g~~R~v~~~ 305 (506)
T PRK01544 293 KDLQ-GHSRVILIS 305 (506)
T ss_pred ecCC-CCceEEEec
Confidence 2222 457777664
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.5e-05 Score=81.09 Aligned_cols=138 Identities=17% Similarity=0.134 Sum_probs=85.1
Q ss_pred CceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc-cc------ceec-cccccCCCCCCccceeeecc
Q 006905 469 RYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG-LV------GTYT-NWCEAMSTYPRTYDLIHADS 540 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg-li------~~~~-~~~e~~~~yp~t~Dlih~~~ 540 (626)
..++|||+|||.|.++.++++.. -.+.|+.+|..+.+++++.+.- +. .+.+ |.-+-+...|.+||+|-++
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D- 143 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD- 143 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe-
Confidence 46789999999999999987652 1246888888889999888762 21 2222 2222233456899999875
Q ss_pred ccccCC--CCCCHHHHHHHhhhhccCCcEEEEE---cChHHHHHHHHHHHhCCCeeEEeecCCCCCCcceEEEEEe
Q 006905 541 VFSLYK--DRCETEDILLEMDRILRPEGGVIFR---DDVDELVKVKRIIDALKWQSQIVDHEDGPLEREKLLFAVK 611 (626)
Q Consensus 541 ~f~~~~--~~c~~~~~l~E~dRiLRPgG~~i~~---d~~~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K 611 (626)
.|.... .......++.++.++|+|||.+++- ........++.+.+.+.-...++..+. ....|+++.|
T Consensus 144 ~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~~~~~~~---~~N~v~~a~~ 216 (262)
T PRK04457 144 GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVLELPAES---HGNVAVFAFK 216 (262)
T ss_pred CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEEEEecCC---CccEEEEEEC
Confidence 454221 1122368999999999999999982 222222223333333333333333321 1347888877
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.01 E-value=4e-05 Score=81.55 Aligned_cols=100 Identities=17% Similarity=0.132 Sum_probs=68.6
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEcccccCCC-CCCCeeEEEecccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAERLPY-PSRAFDMAHCSRCLIP 287 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~~Lpf-~d~sFDlV~~~~~l~h 287 (626)
+.+|||+|||+|.++..|++. .|+++|+++..+..+. +.+...++. +.+..+|+..+.. ..+.||+|++....
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~-~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr-- 250 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAK-QSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPR-- 250 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHH-HHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCC--
Confidence 458999999999999999986 5888888876555433 334455653 6777788665432 34579999997642
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 006905 288 WNQFGGIYLIEVDRVLRPGGYWILSGPPI 316 (626)
Q Consensus 288 ~~~~~~~~L~Ei~RvLKPGG~lvis~pp~ 316 (626)
.. ....+.++...++|++.++++..|.
T Consensus 251 -~G-~~~~~~~~l~~~~~~~ivyvsc~p~ 277 (315)
T PRK03522 251 -RG-IGKELCDYLSQMAPRFILYSSCNAQ 277 (315)
T ss_pred -CC-ccHHHHHHHHHcCCCeEEEEECCcc
Confidence 21 1223334445578999999987654
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.2e-05 Score=78.92 Aligned_cols=97 Identities=13% Similarity=0.093 Sum_probs=64.7
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEccccc-CC-----CCCCCeeE
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAER-LP-----YPSRAFDM 278 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~-Lp-----f~d~sFDl 278 (626)
.++|||+|||+|.-+..|+.. .++++|+++.....+. +...+.++. +.+..+++.. ++ .+.++||+
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~-~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~ 147 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGL-EFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDF 147 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCE
Confidence 458999999999766655542 6889999774443333 333444553 5566666433 22 12468999
Q ss_pred EEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 279 AHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 279 V~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
|+.... ......++.++.++|||||.+++..
T Consensus 148 VfiDa~----k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 148 AFVDAD----KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EEECCC----HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 988532 2223678999999999999988863
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=2e-05 Score=82.68 Aligned_cols=101 Identities=13% Similarity=0.145 Sum_probs=66.8
Q ss_pred CCEEEEeCCCCc----hHHHHHhhC--------CcEEEeCCccchHHHHHHH-HHH--cC--------------------
Q 006905 212 IRTAIDTGCGVA----SWGAYLLSR--------NIITMSFAPRDTHEAQVQF-ALE--RG-------------------- 256 (626)
Q Consensus 212 ~~~VLDIGCGtG----~~a~~La~~--------~V~avdis~~dls~a~i~~-A~e--rg-------------------- 256 (626)
.-+|+..||++| +++..|.+. .|+++|++...+..+..-. ... ++
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 358999999999 566655552 4777777664443322210 000 00
Q ss_pred --------CCeEEEEcccccCCCC-CCCeeEEEeccccccccccH-HHHHHHHHhcccCCeEEEEE
Q 006905 257 --------VPALIGVLAAERLPYP-SRAFDMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 257 --------~~~~~~v~d~~~Lpf~-d~sFDlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis 312 (626)
-.+.|...+....+++ .+.||+|+|.++++|+.... ..++..+.+.|+|||+|++.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 0134555554444443 57899999999998886543 78999999999999998875
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=5.8e-05 Score=85.75 Aligned_cols=97 Identities=16% Similarity=0.113 Sum_probs=66.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHc------------CCCeEEEEccccc-CCCCC
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALER------------GVPALIGVLAAER-LPYPS 273 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~er------------g~~~~~~v~d~~~-Lpf~d 273 (626)
+.++|||||||+|..+..++++ .++++|+++. +++.++++ ...+.+...|... +...+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~-----vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~ 371 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPA-----MTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLA 371 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHH-----HHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCC
Confidence 4568999999999999888775 5777777664 44454441 1235566666544 33335
Q ss_pred CCeeEEEecccccccccc-----HHHHHHHHHhcccCCeEEEEEe
Q 006905 274 RAFDMAHCSRCLIPWNQF-----GGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 274 ~sFDlV~~~~~l~h~~~~-----~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
++||+|++.... +.... ...+++.+.+.|||||.+++..
T Consensus 372 ~~fDvIi~D~~~-~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 372 EKFDVIIVDLPD-PSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CCCCEEEEeCCC-CCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 689999997543 32211 1468899999999999999864
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.6e-05 Score=81.52 Aligned_cols=92 Identities=24% Similarity=0.460 Sum_probs=73.0
Q ss_pred CceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccc-eeccccccCCCCCCccceeeeccccccCCC
Q 006905 469 RYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVG-TYTNWCEAMSTYPRTYDLIHADSVFSLYKD 547 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~-~~~~~~e~~~~yp~t~Dlih~~~~f~~~~~ 547 (626)
+..++||+|||-|+..+.|+.. .-+|..++.|..|...-.+||+-= ...+|-+. +..||+|-|-.|+ +
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~---f~~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~----~~~fDvIscLNvL----D 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL---FKEVYATEASPPMRWRLSKKGFTVLDIDDWQQT----DFKFDVISCLNVL----D 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh---cceEEeecCCHHHHHHHHhCCCeEEehhhhhcc----CCceEEEeehhhh----h
Confidence 5778999999999999999764 225788888989999999999821 11245432 4689999995554 6
Q ss_pred CCCHH-HHHHHhhhhccCCcEEEEE
Q 006905 548 RCETE-DILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 548 ~c~~~-~~l~E~dRiLRPgG~~i~~ 571 (626)
||+-+ .+|.+|.+.|+|+|.+|+.
T Consensus 163 Rc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 163 RCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred ccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 78866 5899999999999999996
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.99 E-value=9.7e-05 Score=75.42 Aligned_cols=104 Identities=16% Similarity=0.158 Sum_probs=70.6
Q ss_pred HHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEcccccCCCCC
Q 006905 201 IGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAERLPYPS 273 (626)
Q Consensus 201 L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~Lpf~d 273 (626)
|...+.+.+ +.+|||.|.|+|.++++|+.. .+++.++-.. ..+.+.+...+.++. +.+...|....-+++
T Consensus 86 I~~~~gi~p--g~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d-~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~ 162 (256)
T COG2519 86 IVARLGISP--GSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIRED-FAKTARENLSEFGLGDRVTLKLGDVREGIDEE 162 (256)
T ss_pred HHHHcCCCC--CCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHH-HHHHHHHHHHHhccccceEEEecccccccccc
Confidence 444444444 459999999999999999953 6777777552 222222222232432 455556655544444
Q ss_pred CCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 274 RAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 274 ~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.||+|+. ..+ ++..++..+..+|+|||.+++-.|
T Consensus 163 -~vDav~L-----Dmp-~PW~~le~~~~~Lkpgg~~~~y~P 196 (256)
T COG2519 163 -DVDAVFL-----DLP-DPWNVLEHVSDALKPGGVVVVYSP 196 (256)
T ss_pred -ccCEEEE-----cCC-ChHHHHHHHHHHhCCCcEEEEEcC
Confidence 8999987 333 368899999999999999999765
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.9e-05 Score=78.58 Aligned_cols=98 Identities=23% Similarity=0.338 Sum_probs=60.5
Q ss_pred CCCEEEEeCCCCc----hHHHHHhhC---------CcEEEeCCccchHHHHHHHHHHc--------C-------------
Q 006905 211 SIRTAIDTGCGVA----SWGAYLLSR---------NIITMSFAPRDTHEAQVQFALER--------G------------- 256 (626)
Q Consensus 211 ~~~~VLDIGCGtG----~~a~~La~~---------~V~avdis~~dls~a~i~~A~er--------g------------- 256 (626)
..-+|+..||++| +++..|.+. .+.++|+++ .+++.|++- +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~-----~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~ 105 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISP-----SALEKARAGIYPERSLRGLPPAYLRRYFTER 105 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-H-----HHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCH-----HHHHHHHhCCCCHHHHhhhHHHHHHHhcccc
Confidence 4568999999999 666666661 466666644 445555420 1
Q ss_pred ------------CCeEEEEcccccCCCCCCCeeEEEeccccccccccH-HHHHHHHHhcccCCeEEEEEe
Q 006905 257 ------------VPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 257 ------------~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~ 313 (626)
-.+.|...+....+.+.+.||+|+|.++++.+.... ..++..+.+.|+|||+|++..
T Consensus 106 ~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 106 DGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp -CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred CCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 125566666555333467899999999998887654 789999999999999999963
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.9e-05 Score=78.93 Aligned_cols=88 Identities=19% Similarity=0.197 Sum_probs=63.3
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceeccccccCCCCC--Cccceeeeccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYTNWCEAMSTYP--RTYDLIHADSV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~~~~e~~~~yp--~t~Dlih~~~~ 541 (626)
-.+|||+|||+|.+++.|++..- .|+.+|.+++++..+.++ |+ +.+.+. ..+..+| ..||+|.++..
T Consensus 79 ~~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~--d~~~~~~~~~~fD~I~~~~~ 153 (212)
T PRK00312 79 GDRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHG--DGWKGWPAYAPFDRILVTAA 153 (212)
T ss_pred CCEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEEC--CcccCCCcCCCcCEEEEccC
Confidence 46799999999999998877632 678888888888877664 33 333332 1233444 78999998543
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
+ ..+..++.+.|+|||.+++.
T Consensus 154 ~---------~~~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 154 A---------PEIPRALLEQLKEGGILVAP 174 (212)
T ss_pred c---------hhhhHHHHHhcCCCcEEEEE
Confidence 3 34556778999999999985
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.7e-05 Score=77.64 Aligned_cols=97 Identities=22% Similarity=0.387 Sum_probs=62.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcC---------CC-------------------
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERG---------VP------------------- 258 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg---------~~------------------- 258 (626)
....+|||||-.|.++..+++. .+.++||++.- ++.|++.- +.
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~L-----I~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~ 132 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVL-----IQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNE 132 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHH-----HHHHHHhccccccccccccCCCcccccccccccccccc
Confidence 3567999999999999888874 78999997643 34443221 00
Q ss_pred ------------eEE----EEcc-cccCCCCCCCeeEEEecc----ccccccccH-HHHHHHHHhcccCCeEEEEE
Q 006905 259 ------------ALI----GVLA-AERLPYPSRAFDMAHCSR----CLIPWNQFG-GIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 259 ------------~~~----~v~d-~~~Lpf~d~sFDlV~~~~----~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis 312 (626)
..+ .+++ .+-|.+....||+|.|-- +...|.++. ..+|..+.++|.|||+|++.
T Consensus 133 a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 133 ADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 000 0111 111223456799999822 112455544 68999999999999999997
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.1e-05 Score=77.92 Aligned_cols=90 Identities=17% Similarity=0.182 Sum_probs=57.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeE-EEEccccc-----CCCCCCCeeEEEe
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPAL-IGVLAAER-----LPYPSRAFDMAHC 281 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~~-~~v~d~~~-----Lpf~d~sFDlV~~ 281 (626)
.+.++||+|||+|.|+..|+++ .++++|+++.++.. .......+. +...+... ++..-..||++++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~-----~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~Dvsfi 149 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE-----KLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFI 149 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH-----HHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEe
Confidence 3568999999999999999887 58888887754443 222222211 22222222 2212236787777
Q ss_pred ccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 006905 282 SRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPP 315 (626)
Q Consensus 282 ~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~pp 315 (626)
+.++ .|..+.+.|+| |.+++-.-|
T Consensus 150 S~~~---------~l~~i~~~l~~-~~~~~L~KP 173 (228)
T TIGR00478 150 SLIS---------ILPELDLLLNP-NDLTLLFKP 173 (228)
T ss_pred ehHh---------HHHHHHHHhCc-CeEEEEcCh
Confidence 6643 47889999999 887776533
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00052 Score=71.97 Aligned_cols=129 Identities=16% Similarity=0.251 Sum_probs=82.8
Q ss_pred eEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHH----hcccc--eeccccccCCCCCCccceeeeccccccC
Q 006905 472 NILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYE----RGLVG--TYTNWCEAMSTYPRTYDLIHADSVFSLY 545 (626)
Q Consensus 472 ~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~----rgli~--~~~~~~e~~~~yp~t~Dlih~~~~f~~~ 545 (626)
+|||+|||+|-.|+.|+++.= ...|+-+|.+...++.+.+ .++-+ ++++ ..++.-.+.||+|-|+==|...
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s--~~~~~v~~kfd~IisNPPfh~G 237 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENTEVWAS--NLYEPVEGKFDLIISNPPFHAG 237 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEe--cccccccccccEEEeCCCccCC
Confidence 899999999999999998731 2245556665455554332 23322 3332 3334444799999998888855
Q ss_pred CCCC--CHHHHHHHhhhhccCCcEEEEEcC--hHHHHHHHHHHHhCCCeeEEeecCCCCCCcceEEEEEe
Q 006905 546 KDRC--ETEDILLEMDRILRPEGGVIFRDD--VDELVKVKRIIDALKWQSQIVDHEDGPLEREKLLFAVK 611 (626)
Q Consensus 546 ~~~c--~~~~~l~E~dRiLRPgG~~i~~d~--~~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K 611 (626)
+.-- -.+.++.+.-+-|++||.++|--. .....+|++++. ++.++... ++-+||=++|
T Consensus 238 ~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg----~v~~la~~----~gf~Vl~a~k 299 (300)
T COG2813 238 KAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG----NVEVLAKN----GGFKVLRAKK 299 (300)
T ss_pred cchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC----CEEEEEeC----CCEEEEEEec
Confidence 4320 113688888999999999988543 345666776665 45544333 3466776666
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.6e-05 Score=85.03 Aligned_cols=114 Identities=15% Similarity=0.191 Sum_probs=76.7
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cccceeccccccCCCCC---Cccceeeecccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GLVGTYTNWCEAMSTYP---RTYDLIHADSVF 542 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gli~~~~~~~e~~~~yp---~t~Dlih~~~~f 542 (626)
-..|||.|||+|++...++..+. +|+.+|.++.|+..+.++ |+-. ++-.+.++...| .+||+|.++--|
T Consensus 183 g~~vLDp~cGtG~~lieaa~~~~---~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~~~D~Iv~dPPy 258 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAGLMGA---KVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSESVDAIATDPPY 258 (329)
T ss_pred cCEEEECCCCCCHHHHHHHHhCC---eEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccCCCCEEEECCCC
Confidence 34799999999999877666554 788999998888865543 4422 111123333333 799999997555
Q ss_pred ccCC--C----CCCHHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHhCCC
Q 006905 543 SLYK--D----RCETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKW 589 (626)
Q Consensus 543 ~~~~--~----~c~~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~l~w 589 (626)
.... . ......+|.|+.|+|||||++++--+.+ ..++++++.--|
T Consensus 259 g~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~~~~~~~~~~g~ 309 (329)
T TIGR01177 259 GRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--IDLESLAEDAFR 309 (329)
T ss_pred cCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--CCHHHHHhhcCc
Confidence 4211 1 1224789999999999999998865432 144566777777
|
This family is found exclusively in the Archaea. |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=97.94 E-value=5e-05 Score=84.17 Aligned_cols=98 Identities=17% Similarity=0.191 Sum_probs=66.4
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEccccc----CCCCCCCeeEEEeccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAER----LPYPSRAFDMAHCSRC 284 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~----Lpf~d~sFDlV~~~~~ 284 (626)
..+|||+|||+|.++..|++. .|+++|+++.++..+.. .+...++ .+.+..+|+.. +++.+++||+|+....
T Consensus 293 ~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~-n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPP 371 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQ-NAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPP 371 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHH-HHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcC
Confidence 458999999999999999875 68888887765554433 3334454 46677777543 2344568999998664
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 285 LIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 285 l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
- ..-...++..+.+ |+|++.++++..
T Consensus 372 r---~G~~~~~l~~l~~-l~~~~ivyvsc~ 397 (431)
T TIGR00479 372 R---KGCAAEVLRTIIE-LKPERIVYVSCN 397 (431)
T ss_pred C---CCCCHHHHHHHHh-cCCCEEEEEcCC
Confidence 3 1112456665554 899998888754
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00011 Score=73.26 Aligned_cols=120 Identities=18% Similarity=0.250 Sum_probs=69.7
Q ss_pred ceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhcccceeccccccCCCCC---CccceeeeccccccC
Q 006905 470 YRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYP---RTYDLIHADSVFSLY 545 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~yp---~t~Dlih~~~~f~~~ 545 (626)
.-.|=|||||-+..|+++.+. .|.-..+++.... + .. | ....-| .+.|++.+. ++..
T Consensus 73 ~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n~~-----------V---ta--c-dia~vPL~~~svDv~Vfc--LSLM 133 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPNPR-----------V---TA--C-DIANVPLEDESVDVAVFC--LSLM 133 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S---EEEEESS-SSTT-----------E---EE--S--TTS-S--TT-EEEEEEE--S---
T ss_pred CEEEEECCCchHHHHHhcccCceEEEeeccCCCCC-----------E---EE--e-cCccCcCCCCceeEEEEE--hhhh
Confidence 457999999999999887543 3544445554321 1 11 1 123444 999987652 2222
Q ss_pred CCCCCHHHHHHHhhhhccCCcEEEEEcChHH---HHHHHHHHHhCCCeeEEeecCCCCCCcceEEEEEecc
Q 006905 546 KDRCETEDILLEMDRILRPEGGVIFRDDVDE---LVKVKRIIDALKWQSQIVDHEDGPLEREKLLFAVKLY 613 (626)
Q Consensus 546 ~~~c~~~~~l~E~dRiLRPgG~~i~~d~~~~---~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K~~ 613 (626)
+ =+..+.|.|..|||||||.++|.+-..- .+...+.++++..+....|..+ .--.++..+|.-
T Consensus 134 G--Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~~n---~~F~~f~F~K~~ 199 (219)
T PF05148_consen 134 G--TNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDESN---KHFVLFEFKKIR 199 (219)
T ss_dssp S--S-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE--S---TTEEEEEEEE-S
T ss_pred C--CCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecccCC---CeEEEEEEEEcC
Confidence 2 2678999999999999999999876543 4555566888888887665443 334566667754
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=97.92 E-value=4.8e-05 Score=81.00 Aligned_cols=95 Identities=12% Similarity=0.170 Sum_probs=67.5
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhccc------cee-ccc-cccCCCCCCccceeeecccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLV------GTY-TNW-CEAMSTYPRTYDLIHADSVF 542 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli------~~~-~~~-~e~~~~yp~t~Dlih~~~~f 542 (626)
.+|||+|||+|.++..|++++. +|+.+|.+++|++++.+|.-- +.. ..+ +..+...+++||+|-|..++
T Consensus 146 ~~VLDlGcGtG~~a~~la~~g~---~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~vL 222 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALEGA---IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDVL 222 (315)
T ss_pred CEEEEecCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCEE
Confidence 5799999999999999999875 899999999999999887421 000 011 22334446899999999998
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
.|+.+. .+..++..+.++ .+||. ||+
T Consensus 223 ~H~p~~-~~~~ll~~l~~l-~~g~l-iIs 248 (315)
T PLN02585 223 IHYPQD-KADGMIAHLASL-AEKRL-IIS 248 (315)
T ss_pred EecCHH-HHHHHHHHHHhh-cCCEE-EEE
Confidence 887642 334566666664 45555 444
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=7.4e-06 Score=84.53 Aligned_cols=108 Identities=21% Similarity=0.218 Sum_probs=75.1
Q ss_pred HHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeE
Q 006905 199 DDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSRNIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDM 278 (626)
Q Consensus 199 ~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDl 278 (626)
.+..+++..... +..+||+|||.|-.+.--....+++.|+ ....+.-++..+.. ...+.|+..+|+.+.+||.
T Consensus 34 p~v~qfl~~~~~-gsv~~d~gCGngky~~~~p~~~~ig~D~-----c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~ 106 (293)
T KOG1331|consen 34 PMVRQFLDSQPT-GSVGLDVGCGNGKYLGVNPLCLIIGCDL-----CTGLLGGAKRSGGD-NVCRADALKLPFREESFDA 106 (293)
T ss_pred HHHHHHHhccCC-cceeeecccCCcccCcCCCcceeeecch-----hhhhccccccCCCc-eeehhhhhcCCCCCCcccc
Confidence 344444442222 5689999999995443211124555555 33344445444443 4556789999999999999
Q ss_pred EEeccccccccccH--HHHHHHHHhcccCCeEEEEEe
Q 006905 279 AHCSRCLIPWNQFG--GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 279 V~~~~~l~h~~~~~--~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+++.-++||+.... ..+++|+.|+|||||...+..
T Consensus 107 ~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 107 ALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred chhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 99999998987654 689999999999999987753
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=9.2e-05 Score=65.07 Aligned_cols=97 Identities=29% Similarity=0.371 Sum_probs=63.2
Q ss_pred EEEeCCCCchH--HHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEccccc--CCCCC-CCeeEEEeccccc
Q 006905 215 AIDTGCGVASW--GAYLLSR--NIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAER--LPYPS-RAFDMAHCSRCLI 286 (626)
Q Consensus 215 VLDIGCGtG~~--a~~La~~--~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~~--Lpf~d-~sFDlV~~~~~l~ 286 (626)
+||+|||+|.. ...+... .++++|+++..+.... ......+.. +.+...+... +++.. ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALAR-ARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHH-hhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 99999999984 3444332 3555666554443311 111112211 3455556554 78877 489999 666665
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 287 PWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 287 h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++.. ....+.++.++|+|+|.+++...
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEec
Confidence 6555 68899999999999999999864
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=3.1e-05 Score=91.00 Aligned_cols=102 Identities=15% Similarity=0.089 Sum_probs=70.1
Q ss_pred CCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC---CeEEEEccccc-CCCCCCCeeEEEeccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV---PALIGVLAAER-LPYPSRAFDMAHCSRC 284 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~---~~~~~v~d~~~-Lpf~d~sFDlV~~~~~ 284 (626)
+++|||+|||+|.++..++.. .|+++|+++..+..+..+.. .+++ .+.+..+|... +.-..++||+|++..-
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~-~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFA-LNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH-HhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 458999999999999999876 48888888866655444433 3444 35677777433 2111468999999653
Q ss_pred cccc----------cccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 285 LIPW----------NQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 285 l~h~----------~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
...- ..+...++..+.++|+|||.++++..
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 2111 11124678888999999999999754
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.84 E-value=5.7e-05 Score=79.09 Aligned_cols=119 Identities=14% Similarity=0.251 Sum_probs=81.9
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcc-cHHHHHHhcccce---eccc---cccCCCCCCccceeeecc
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKIN-TLGVIYERGLVGT---YTNW---CEAMSTYPRTYDLIHADS 540 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~-~l~~~~~rgli~~---~~~~---~e~~~~yp~t~Dlih~~~ 540 (626)
=.-|.|||+|||-|-+.-.|+.++. -.|+++|.+.- .+++-+-+-++|. .|-. -|.++. .++||+|-|.|
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~GA--~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MG 190 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRGA--KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMG 190 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcCC--CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEee
Confidence 3457899999999999999999876 24666665422 3444444455441 1110 123333 49999999999
Q ss_pred ccccCCCCCCHHHHHHHhhhhccCCcEEEEE------c------------Ch------HHHHHHHHHHHhCCCeeE
Q 006905 541 VFSLYKDRCETEDILLEMDRILRPEGGVIFR------D------------DV------DELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 541 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~------d------------~~------~~~~~~~~~~~~l~w~~~ 592 (626)
|+=|.. +.-+.|.++...|||||.+|+- | .| -....++.-+++..++-.
T Consensus 191 VLYHrr---~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v 263 (315)
T PF08003_consen 191 VLYHRR---SPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDV 263 (315)
T ss_pred ehhccC---CHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceE
Confidence 998766 5578999999999999999973 1 01 125667777777777644
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=97.84 E-value=2.5e-05 Score=78.24 Aligned_cols=127 Identities=17% Similarity=0.238 Sum_probs=79.2
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHH-----hcccceec-cccccCCCCCCccceeeeccc
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYE-----RGLVGTYT-NWCEAMSTYPRTYDLIHADSV 541 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~-----rgli~~~~-~~~e~~~~yp~t~Dlih~~~~ 541 (626)
.....+||.|||.|..+..|+-.-.-.+-+| +..+..++.+.+ .+-++.+. .=-+.|.+=+..||+|+++++
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlV--Ep~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~ 131 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLV--EPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWC 131 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-SEEEEE--ES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-
T ss_pred CCcceEEecccccchhHHHHHHHhcCEeEEe--ccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHh
Confidence 3577899999999999998865522222333 333568888883 33333222 112233322379999999999
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh-----------H-----HHHHHHHHHHhCCCeeEEeecC
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFRDDV-----------D-----ELVKVKRIIDALKWQSQIVDHE 597 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~-----------~-----~~~~~~~~~~~l~w~~~~~~~e 597 (626)
..|+.+. ++...|.-.-.-|||+|.+|+-|+. | ....+++|+++=.+++...+.+
T Consensus 132 lghLTD~-dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 132 LGHLTDE-DLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQ 202 (218)
T ss_dssp GGGS-HH-HHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-
T ss_pred hccCCHH-HHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccc
Confidence 9999984 7778899999999999999996432 1 2677888888877777654444
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00013 Score=88.25 Aligned_cols=101 Identities=18% Similarity=0.157 Sum_probs=68.2
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-----------------CeEEEEcccccCC
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV-----------------PALIGVLAAERLP 270 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~-----------------~~~~~v~d~~~Lp 270 (626)
+.+|||+|||+|.++..|+++ .++++|+++..+..+..+... +++ .+.+...|....
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~-n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~- 196 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYL-NALDDDGLPVYDGEGKTLLDRVEFYESDLLGY- 196 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-cCcccccccccccccccccccEEEEECchhhh-
Confidence 358999999999999998874 589999988666555444432 211 356666664332
Q ss_pred CCC--CCeeEEEecccccccc---------------------------------ccH----HHHHHHHHhcccCCeEEEE
Q 006905 271 YPS--RAFDMAHCSRCLIPWN---------------------------------QFG----GIYLIEVDRVLRPGGYWIL 311 (626)
Q Consensus 271 f~d--~sFDlV~~~~~l~h~~---------------------------------~~~----~~~L~Ei~RvLKPGG~lvi 311 (626)
+.+ ..||+|+++...+.-. .+. ..++.+..++|+|||.+++
T Consensus 197 ~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 197 CRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred ccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 222 3699999976533110 111 3577888899999999999
Q ss_pred EeC
Q 006905 312 SGP 314 (626)
Q Consensus 312 s~p 314 (626)
...
T Consensus 277 EiG 279 (1082)
T PLN02672 277 NMG 279 (1082)
T ss_pred EEC
Confidence 754
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=97.83 E-value=7.6e-06 Score=73.19 Aligned_cols=98 Identities=19% Similarity=0.252 Sum_probs=68.1
Q ss_pred eEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-------cceec-cccccCCCCC-Cccceeeecccc
Q 006905 472 NILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-------VGTYT-NWCEAMSTYP-RTYDLIHADSVF 542 (626)
Q Consensus 472 ~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-------i~~~~-~~~e~~~~yp-~t~Dlih~~~~f 542 (626)
+|||+|||.|.+..++++.+ ..+++.+|..+..++++..+=- +.+++ |+.+....++ ..||+|-++--|
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred EEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 69999999999999999886 3489999998777776665322 23333 2222222344 999999998888
Q ss_pred ccCC-C----CCCHHHHHHHhhhhccCCcEEEEE
Q 006905 543 SLYK-D----RCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 543 ~~~~-~----~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
.... . +-....++.++.|+|||||.+++-
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 7432 1 113457899999999999999874
|
... |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00014 Score=77.48 Aligned_cols=96 Identities=16% Similarity=0.274 Sum_probs=61.5
Q ss_pred CcHHHHHHHHHHhhccC------CCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC--e
Q 006905 192 NGADAYIDDIGKLINLN------DGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVP--A 259 (626)
Q Consensus 192 ~ga~~yi~~L~~ll~l~------~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~--~ 259 (626)
.+.-.|+..+.+++... .+...++||||||+|.+...|+.+ .++++|+++..+..++...+...++. +
T Consensus 89 P~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I 168 (321)
T PRK11727 89 PGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAI 168 (321)
T ss_pred CcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcE
Confidence 34667888888887532 234578999999999777777654 68899998866665555444331343 3
Q ss_pred EEEE-cccccCC----CCCCCeeEEEecccccc
Q 006905 260 LIGV-LAAERLP----YPSRAFDMAHCSRCLIP 287 (626)
Q Consensus 260 ~~~v-~d~~~Lp----f~d~sFDlV~~~~~l~h 287 (626)
.+.. .+...+. .+.+.||+|+|+.-++.
T Consensus 169 ~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~ 201 (321)
T PRK11727 169 RLRLQKDSKAIFKGIIHKNERFDATLCNPPFHA 201 (321)
T ss_pred EEEEccchhhhhhcccccCCceEEEEeCCCCcC
Confidence 3322 1222221 24668999999997643
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=97.82 E-value=9.9e-05 Score=71.84 Aligned_cols=101 Identities=16% Similarity=0.162 Sum_probs=59.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcC----CCeEEEEccc-ccC--C-CCCCCeeE
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERG----VPALIGVLAA-ERL--P-YPSRAFDM 278 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg----~~~~~~v~d~-~~L--p-f~d~sFDl 278 (626)
.+.+|||||||+|..+..++.. .|+.+|..+ .-+.....+..++ ..+.+...+- ... . .....||+
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~--~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE--VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S---HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch--hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 4669999999999777666665 788899866 3333333333333 2334444431 111 1 23468999
Q ss_pred EEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 279 AHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 279 V~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
|+++.++ ........++.-+.++|+|+|.++++.+
T Consensus 123 IlasDv~-Y~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 123 ILASDVL-YDEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEES---S-GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEeccc-chHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 9999998 4444458899999999999999777743
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=7.9e-05 Score=81.79 Aligned_cols=101 Identities=11% Similarity=-0.008 Sum_probs=66.8
Q ss_pred CCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC---CeEEEEcccccC-C---CCCCCeeEEEe
Q 006905 212 IRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV---PALIGVLAAERL-P---YPSRAFDMAHC 281 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~---~~~~~v~d~~~L-p---f~d~sFDlV~~ 281 (626)
+.+|||+|||+|.++..++.. .++++|+++..+..+.. .+..+++ .+.+..+|+... . ...++||+|++
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~-N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQ-NVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 458999999999998775543 58899998866554433 3334454 356777775442 1 13468999999
Q ss_pred ccccccccc--------cHHHHHHHHHhcccCCeEEEEEe
Q 006905 282 SRCLIPWNQ--------FGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 282 ~~~l~h~~~--------~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
......-.. ....++....++|+|||.|++..
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 764311110 11345566789999999999864
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00015 Score=76.34 Aligned_cols=139 Identities=11% Similarity=0.049 Sum_probs=88.2
Q ss_pred CceeEEeccCchhhHhhhhhCCC-eEEEEeccCccCcccHHHHHHh-----cc---ccee-ccccccCCCCC--Ccccee
Q 006905 469 RYRNILDMNAHLGGFAAALIDFP-VWVMNVVPAEAKINTLGVIYER-----GL---VGTY-TNWCEAMSTYP--RTYDLI 536 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~-v~~mnv~~~~~~~~~l~~~~~r-----gl---i~~~-~~~~e~~~~yp--~t~Dli 536 (626)
.-++|+|+|||.|++.+.+.... .--..++.+|.++.+++.+.+. |+ +... +|..+ ..+ ..||+|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~---~~~~l~~FDlV 199 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMD---VTESLKEYDVV 199 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhh---cccccCCcCEE
Confidence 56889999999998876654321 1112478889998888866552 33 2222 22222 222 789999
Q ss_pred eeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC--h-HHHHHHHHHHHhCCCeeEEeecCCCCCCcceEEEEEecc
Q 006905 537 HADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDD--V-DELVKVKRIIDALKWQSQIVDHEDGPLEREKLLFAVKLY 613 (626)
Q Consensus 537 h~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~--~-~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K~~ 613 (626)
-+. ++.+. ++-+.+.+|..+.|.|||||+++++-. + ..+...-....-=.|+...+-|-.++ +-.-++|++|.-
T Consensus 200 F~~-ALi~~-dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~gf~~~~~~~P~~~-v~Nsvi~~r~~~ 276 (296)
T PLN03075 200 FLA-ALVGM-DKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLRGFEVLSVFHPTDE-VINSVIIARKPG 276 (296)
T ss_pred EEe-ccccc-ccccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCCCeEEEEEECCCCC-ceeeEEEEEeec
Confidence 997 44443 223668999999999999999999842 2 12211111111117888766555454 557899999965
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=97.81 E-value=2.5e-05 Score=74.95 Aligned_cols=72 Identities=15% Similarity=0.115 Sum_probs=54.7
Q ss_pred cCccCcccHHHHHHhcc---------cceeccccccCCCCC-CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEE
Q 006905 499 PAEAKINTLGVIYERGL---------VGTYTNWCEAMSTYP-RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGV 568 (626)
Q Consensus 499 ~~~~~~~~l~~~~~rgl---------i~~~~~~~e~~~~yp-~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~ 568 (626)
++|.+++||+++.+|-- |..++.=++.++ ++ ++||+|-+..++.+.. +...+|.|+.|+|||||.+
T Consensus 2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~v~~~~~l~~~~---d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLP-FDDCEFDAVTMGYGLRNVV---DRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred eEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCC-CCCCCeeEEEecchhhcCC---CHHHHHHHHHHHcCcCeEE
Confidence 57889999999976531 334443345543 44 7999999988777765 5689999999999999999
Q ss_pred EEEcCh
Q 006905 569 IFRDDV 574 (626)
Q Consensus 569 i~~d~~ 574 (626)
+|.|-.
T Consensus 78 ~i~d~~ 83 (160)
T PLN02232 78 SILDFN 83 (160)
T ss_pred EEEECC
Confidence 988643
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00014 Score=79.32 Aligned_cols=100 Identities=15% Similarity=0.100 Sum_probs=67.1
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCC-CCCCCeeEEEecccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLP-YPSRAFDMAHCSRCLIP 287 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lp-f~d~sFDlV~~~~~l~h 287 (626)
+.+|||+|||+|.++..++.+ .++++|+++..+..+. +.+...++ .+.+..+|+.... ....+||+|++....
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~-~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr-- 310 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQ-QSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR-- 310 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHH-HHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC--
Confidence 358999999999999999876 6888888775554333 33444555 4667777765432 122469999998743
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 006905 288 WNQFGGIYLIEVDRVLRPGGYWILSGPPI 316 (626)
Q Consensus 288 ~~~~~~~~L~Ei~RvLKPGG~lvis~pp~ 316 (626)
..-...++..+. .++|++.++++..|.
T Consensus 311 -~G~~~~~l~~l~-~~~p~~ivyvsc~p~ 337 (374)
T TIGR02085 311 -RGIGKELCDYLS-QMAPKFILYSSCNAQ 337 (374)
T ss_pred -CCCcHHHHHHHH-hcCCCeEEEEEeCHH
Confidence 222245555554 479999999996533
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.79 E-value=3.2e-05 Score=78.76 Aligned_cols=102 Identities=18% Similarity=0.252 Sum_probs=73.5
Q ss_pred cCCCCCceeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHHHhcccceeccccccCCCCCCccceeeeccc
Q 006905 464 LGQSGRYRNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYPRTYDLIHADSV 541 (626)
Q Consensus 464 ~~~~~~~r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~yp~t~Dlih~~~~ 541 (626)
... ...++|+|+|+|.|.++.+++++ ++ .++-.|.+ .+++.+.+..-|...- ..-|.++|. +|++...++
T Consensus 96 ~d~-~~~~~vvDvGGG~G~~~~~l~~~~P~l---~~~v~Dlp-~v~~~~~~~~rv~~~~--gd~f~~~P~-~D~~~l~~v 167 (241)
T PF00891_consen 96 FDF-SGFKTVVDVGGGSGHFAIALARAYPNL---RATVFDLP-EVIEQAKEADRVEFVP--GDFFDPLPV-ADVYLLRHV 167 (241)
T ss_dssp STT-TTSSEEEEET-TTSHHHHHHHHHSTTS---EEEEEE-H-HHHCCHHHTTTEEEEE--S-TTTCCSS-ESEEEEESS
T ss_pred ccc-cCccEEEeccCcchHHHHHHHHHCCCC---cceeeccH-hhhhcccccccccccc--ccHHhhhcc-ccceeeehh
Confidence 445 67899999999999999999765 33 34446665 6666666633233322 133477888 999999999
Q ss_pred cccCCCCCCHHHHHHHhhhhccCC--cEEEEEcCh
Q 006905 542 FSLYKDRCETEDILLEMDRILRPE--GGVIFRDDV 574 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPg--G~~i~~d~~ 574 (626)
++.+.+. +...||..+.+.|+|| |.++|-|.+
T Consensus 168 Lh~~~d~-~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 168 LHDWSDE-DCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp GGGS-HH-HHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred hhhcchH-HHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 9998863 5567999999999999 999997643
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=97.76 E-value=5.9e-05 Score=74.97 Aligned_cols=112 Identities=22% Similarity=0.283 Sum_probs=74.7
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHH----Hhcc--cceeccccccCC---C-C-CCccceeeec
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIY----ERGL--VGTYTNWCEAMS---T-Y-PRTYDLIHAD 539 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~----~rgl--i~~~~~~~e~~~---~-y-p~t~Dlih~~ 539 (626)
..+||+|||.|.|...++...- -.|++++|...+-+..+. ++|+ +.+++ +.+.. . + |.+.|-||.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~P-d~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~--~da~~~l~~~~~~~~v~~i~i- 94 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNP-DINFIGIEIRKKRVAKALRKAEKRGLKNVRFLR--GDARELLRRLFPPGSVDRIYI- 94 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHST-TSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEE--S-CTTHHHHHSTTTSEEEEEE-
T ss_pred CeEEEecCCCCHHHHHHHHHCC-CCCEEEEecchHHHHHHHHHHHhhcccceEEEE--ccHHHHHhhcccCCchheEEE-
Confidence 3799999999999999986511 138999998876665444 4455 22332 22222 1 3 389999887
Q ss_pred cccc-------cCCCCCCHHHHHHHhhhhccCCcEEEE-EcChHHHHHHHHHHHhC
Q 006905 540 SVFS-------LYKDRCETEDILLEMDRILRPEGGVIF-RDDVDELVKVKRIIDAL 587 (626)
Q Consensus 540 ~~f~-------~~~~~c~~~~~l~E~dRiLRPgG~~i~-~d~~~~~~~~~~~~~~l 587 (626)
.|. |.+.|=--+..|.++.|+|+|||.+.+ ||..+....+.+.+...
T Consensus 95 -~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~ 149 (195)
T PF02390_consen 95 -NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEES 149 (195)
T ss_dssp -ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHH
T ss_pred -eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence 555 233333336799999999999999988 57778888888877775
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00029 Score=72.43 Aligned_cols=117 Identities=18% Similarity=0.289 Sum_probs=72.4
Q ss_pred cHHHHHHHHHHhhccC-CCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHc----CCCeEEEE
Q 006905 193 GADAYIDDIGKLINLN-DGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALER----GVPALIGV 263 (626)
Q Consensus 193 ga~~yi~~L~~ll~l~-~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~er----g~~~~~~v 263 (626)
..+++.+.+.+.+... ......+||+|||+|.++..|+.. .++++|.++ +++..|.++ ++...+.+
T Consensus 129 ETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~-----~Ai~La~eN~qr~~l~g~i~v 203 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSK-----AAIKLAKENAQRLKLSGRIEV 203 (328)
T ss_pred cHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccH-----HHHHHHHHHHHHHhhcCceEE
Confidence 3456666666665422 222347999999999888887764 677777755 444444433 33222222
Q ss_pred c------c-cccCCCCCCCeeEEEeccccccccccH-------------------------HHHHHHHHhcccCCeEEEE
Q 006905 264 L------A-AERLPYPSRAFDMAHCSRCLIPWNQFG-------------------------GIYLIEVDRVLRPGGYWIL 311 (626)
Q Consensus 264 ~------d-~~~Lpf~d~sFDlV~~~~~l~h~~~~~-------------------------~~~L~Ei~RvLKPGG~lvi 311 (626)
. + ....+...+.+|+++||.-.+.-.+.. ..++.-+.|.|+|||.+++
T Consensus 204 ~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~l 283 (328)
T KOG2904|consen 204 IHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQL 283 (328)
T ss_pred EecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEE
Confidence 2 2 233445678999999987543211110 1456678899999999999
Q ss_pred EeC
Q 006905 312 SGP 314 (626)
Q Consensus 312 s~p 314 (626)
...
T Consensus 284 e~~ 286 (328)
T KOG2904|consen 284 ELV 286 (328)
T ss_pred Eec
Confidence 753
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00045 Score=67.72 Aligned_cols=91 Identities=14% Similarity=0.093 Sum_probs=59.5
Q ss_pred CCCCCCEEEEeCCCCchHHHHHhh---CCcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEeccc
Q 006905 208 NDGSIRTAIDTGCGVASWGAYLLS---RNIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRC 284 (626)
Q Consensus 208 ~~~~~~~VLDIGCGtG~~a~~La~---~~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~ 284 (626)
.+-.+++|+|+|||||.++...+- ..|+++|+++. ..+...+.+.+.+..+.+.+.|..+.. +.||.|+.|..
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~-a~ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPP 117 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPE-ALEIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNPP 117 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHH-HHHHHHHHHHhhCCceEEEEcchhhcC---CccceEEECCC
Confidence 344567899999999966654433 37999999884 344555556565667888887776654 56889999876
Q ss_pred cccccccH-HHHHHHHHhc
Q 006905 285 LIPWNQFG-GIYLIEVDRV 302 (626)
Q Consensus 285 l~h~~~~~-~~~L~Ei~Rv 302 (626)
+--+.... ..+|....+.
T Consensus 118 FG~~~rhaDr~Fl~~Ale~ 136 (198)
T COG2263 118 FGSQRRHADRPFLLKALEI 136 (198)
T ss_pred CccccccCCHHHHHHHHHh
Confidence 53222111 4455555544
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00011 Score=71.38 Aligned_cols=137 Identities=18% Similarity=0.185 Sum_probs=74.7
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceecc-----ccccCCCC----CCccceeee
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTN-----WCEAMSTY----PRTYDLIHA 538 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~-----~~e~~~~y----p~t~Dlih~ 538 (626)
+...+|||+||+.|||..+++++......|+++|..+. -+. ++...+..| .-+.+... .+.||+|.|
T Consensus 22 ~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-~~~---~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~ 97 (181)
T PF01728_consen 22 GKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-DPL---QNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLS 97 (181)
T ss_dssp TTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-GS----TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE
T ss_pred ccccEEEEcCCcccceeeeeeecccccceEEEEecccc-ccc---cceeeeecccchhhHHHhhhhhccccccCcceecc
Confidence 57899999999999999999999733346677776522 111 222111001 11112222 168999999
Q ss_pred ccccccCCCCCC-----HH---HHHHHhhhhccCCcEEEEE-----cChHHHHHHHHHHHhCCCeeEEeecCCCCCCcce
Q 006905 539 DSVFSLYKDRCE-----TE---DILLEMDRILRPEGGVIFR-----DDVDELVKVKRIIDALKWQSQIVDHEDGPLEREK 605 (626)
Q Consensus 539 ~~~f~~~~~~c~-----~~---~~l~E~dRiLRPgG~~i~~-----d~~~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~ 605 (626)
++.+....++-. +. ..|.=+-..|||||.+|+- +..+.+..++...+..++- .-.-.++...|.
T Consensus 98 D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~---Kp~~sr~~s~E~ 174 (181)
T PF01728_consen 98 DMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIV---KPPSSRSESSEE 174 (181)
T ss_dssp -------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEE---E-TTSBTTCBEE
T ss_pred ccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEE---ECcCCCCCccEE
Confidence 997765443211 11 1333334779999998884 2346677777766664332 122344556788
Q ss_pred EEEEEe
Q 006905 606 LLFAVK 611 (626)
Q Consensus 606 ~l~~~K 611 (626)
-|||++
T Consensus 175 Ylv~~~ 180 (181)
T PF01728_consen 175 YLVCRG 180 (181)
T ss_dssp EEESEE
T ss_pred EEEEcC
Confidence 888864
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00024 Score=74.32 Aligned_cols=96 Identities=13% Similarity=0.119 Sum_probs=66.5
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEcccc-cCC-C----CCCCeeE
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAE-RLP-Y----PSRAFDM 278 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~-~Lp-f----~d~sFDl 278 (626)
.++|||||+|+|..+..|+.. .++++|.++.... .+.+..++.|+. +.+..+++. .|+ + ..++||+
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~-~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLE-VAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHH-HHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 458999999999999888863 4788888774333 333333455653 556666632 233 1 1368999
Q ss_pred EEeccccccccccHHHHHHHHHhcccCCeEEEEE
Q 006905 279 AHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 279 V~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
|+.-. .......++..+.++|+|||.+++.
T Consensus 198 VFIDa----~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 198 AFVDA----DKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred EEECC----CHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 98744 2233378899999999999999986
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00051 Score=70.74 Aligned_cols=106 Identities=16% Similarity=0.178 Sum_probs=66.7
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEcccccCCCC
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAERLPYP 272 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~Lpf~ 272 (626)
.|...+.+.+ +.+|||.|.|+|+++.+|+.. .|...++...-...+. +.....|+. +.+...|...-.|.
T Consensus 31 ~I~~~l~i~p--G~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~-~n~~~~gl~~~v~~~~~Dv~~~g~~ 107 (247)
T PF08704_consen 31 YILMRLDIRP--GSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKAR-KNFERHGLDDNVTVHHRDVCEEGFD 107 (247)
T ss_dssp HHHHHTT--T--T-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHH-HHHHHTTCCTTEEEEES-GGCG--S
T ss_pred HHHHHcCCCC--CCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHH-HHHHHcCCCCCceeEecceeccccc
Confidence 3444454555 559999999999999999874 5777777553332222 233344553 56677776443342
Q ss_pred ---CCCeeEEEeccccccccccHHHHHHHHHhcc-cCCeEEEEEeC
Q 006905 273 ---SRAFDMAHCSRCLIPWNQFGGIYLIEVDRVL-RPGGYWILSGP 314 (626)
Q Consensus 273 ---d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvL-KPGG~lvis~p 314 (626)
+..||.|+.-. ++ +..++..+.++| ||||.++.-.|
T Consensus 108 ~~~~~~~DavfLDl-----p~-Pw~~i~~~~~~L~~~gG~i~~fsP 147 (247)
T PF08704_consen 108 EELESDFDAVFLDL-----PD-PWEAIPHAKRALKKPGGRICCFSP 147 (247)
T ss_dssp TT-TTSEEEEEEES-----SS-GGGGHHHHHHHE-EEEEEEEEEES
T ss_pred ccccCcccEEEEeC-----CC-HHHHHHHHHHHHhcCCceEEEECC
Confidence 36799998733 33 466889999999 99999998765
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0012 Score=66.65 Aligned_cols=96 Identities=19% Similarity=0.221 Sum_probs=66.8
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEE-ccc-ccCC-CCCCCeeEEEe
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVP--ALIGV-LAA-ERLP-YPSRAFDMAHC 281 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~--~~~~v-~d~-~~Lp-f~d~sFDlV~~ 281 (626)
.++||+||.+.|.-+..|+.. .++++|+.+.....+...++ +.|+. +.... +|+ +.+. ...++||+|+.
T Consensus 60 ~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~-~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFI 138 (219)
T COG4122 60 PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLA-EAGVDDRIELLLGGDALDVLSRLLDGSFDLVFI 138 (219)
T ss_pred CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHH-HcCCcceEEEEecCcHHHHHHhccCCCccEEEE
Confidence 458999999999888888774 48889987755444443333 44543 33333 242 2222 45689999986
Q ss_pred ccccccccccHHHHHHHHHhcccCCeEEEEE
Q 006905 282 SRCLIPWNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 282 ~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
-. ...+...+|..+.++|||||.+++.
T Consensus 139 Da----dK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 139 DA----DKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred eC----ChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 33 3344478999999999999999996
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00023 Score=73.65 Aligned_cols=85 Identities=16% Similarity=0.132 Sum_probs=57.5
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCC
Q 006905 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYP 272 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~ 272 (626)
...++.+.+.+.... +.+|||||||+|.++..|+++ .++++|+++..+......+. . ...+.+..+|+..++++
T Consensus 15 ~~~~~~iv~~~~~~~--~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~-~-~~~v~ii~~D~~~~~~~ 90 (258)
T PRK14896 15 DRVVDRIVEYAEDTD--GDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEI-A-AGNVEIIEGDALKVDLP 90 (258)
T ss_pred HHHHHHHHHhcCCCC--cCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhc-c-CCCEEEEEeccccCCch
Confidence 345556666654443 458999999999999999987 57888886644332221111 1 22466777788777765
Q ss_pred CCCeeEEEecccc
Q 006905 273 SRAFDMAHCSRCL 285 (626)
Q Consensus 273 d~sFDlV~~~~~l 285 (626)
.||.|+++...
T Consensus 91 --~~d~Vv~NlPy 101 (258)
T PRK14896 91 --EFNKVVSNLPY 101 (258)
T ss_pred --hceEEEEcCCc
Confidence 48999998865
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0004 Score=70.72 Aligned_cols=109 Identities=19% Similarity=0.272 Sum_probs=71.4
Q ss_pred CceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-------ccee-ccccccCCCCCCccceeeecc
Q 006905 469 RYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-------VGTY-TNWCEAMSTYPRTYDLIHADS 540 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-------i~~~-~~~~e~~~~yp~t~Dlih~~~ 540 (626)
.-.+|||+|||+|+|+..|++.++ -.|+++|.+.+|+...+...- ..+- .+|.+....+ .+||+.-+
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~-~~~Dvsfi-- 149 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDF-ATFDVSFI-- 149 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCc-eeeeEEEe--
Confidence 346899999999999999999975 468999999878875333321 1111 1233322112 25555444
Q ss_pred ccccCCCCCCHHHHHHHhhhhccCCcEEEEE-------------------cCh---HHHHHHHHHHHhCCCeeE
Q 006905 541 VFSLYKDRCETEDILLEMDRILRPEGGVIFR-------------------DDV---DELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 541 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~-------------------d~~---~~~~~~~~~~~~l~w~~~ 592 (626)
.+..+|..|.+.|+| |.+|+- |.. .++.++...+..+.|.+.
T Consensus 150 ---------S~~~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (228)
T TIGR00478 150 ---------SLISILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEK 213 (228)
T ss_pred ---------ehHhHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEe
Confidence 335678999999999 887763 222 346666666777888765
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00011 Score=78.02 Aligned_cols=98 Identities=14% Similarity=0.222 Sum_probs=65.7
Q ss_pred CCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCe--EEEEcccccCCCCCCCeeEEEeccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPA--LIGVLAAERLPYPSRAFDMAHCSRCLI 286 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~--~~~v~d~~~Lpf~d~sFDlV~~~~~l~ 286 (626)
.++|||+|||+|.+...-++. .|.+++.+. +..-..+.++.++... .+..+.++.+-+|-...|+|++-+.-.
T Consensus 61 dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~--ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAGARKVYAVEASS--IADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhCcceEEEEechH--HHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 569999999999777766665 788888755 3345556666777654 344444555555577899999844220
Q ss_pred --cccccHHHHHHHHHhcccCCeEEEE
Q 006905 287 --PWNQFGGIYLIEVDRVLRPGGYWIL 311 (626)
Q Consensus 287 --h~~~~~~~~L~Ei~RvLKPGG~lvi 311 (626)
-+......+|..=.+.|+|||.++=
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 1112225667777899999998754
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00039 Score=69.71 Aligned_cols=97 Identities=20% Similarity=0.185 Sum_probs=66.7
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEccccc-CC-----CCCCCeeE
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAER-LP-----YPSRAFDM 278 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~-Lp-----f~d~sFDl 278 (626)
.++||+|||++|.-+..|++. .++++++++... +.+.++....|. .+.+..+++.. ++ ...+.||+
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~-~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERA-EIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHH-HHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHH-HHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 458999999999988888864 688888877433 333334444454 36666666432 22 12468999
Q ss_pred EEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 279 AHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 279 V~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
|+.-. .......++..+.++|+|||.+++..
T Consensus 125 VFiDa----~K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 125 VFIDA----DKRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEEES----TGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEEcc----cccchhhHHHHHhhhccCCeEEEEcc
Confidence 98744 23344778999999999999999973
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00033 Score=74.57 Aligned_cols=95 Identities=23% Similarity=0.222 Sum_probs=70.3
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcc-cccCCCCCCCeeEEEeccccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLA-AERLPYPSRAFDMAHCSRCLIPW 288 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d-~~~Lpf~d~sFDlV~~~~~l~h~ 288 (626)
...++|+|.|.|..+..+... .+.+++++...+.+++...+ .| +...-+| .+..|- -|+|++-+++|||
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~--~g--V~~v~gdmfq~~P~----~daI~mkWiLhdw 249 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA--PG--VEHVAGDMFQDTPK----GDAIWMKWILHDW 249 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc--CC--cceecccccccCCC----cCeEEEEeecccC
Confidence 468999999999999998886 67788885543333332222 33 3333344 444553 4599999999999
Q ss_pred cccH-HHHHHHHHhcccCCeEEEEEeC
Q 006905 289 NQFG-GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 289 ~~~~-~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.++. ..+|++++..|+|||.+++...
T Consensus 250 tDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 250 TDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 9876 7999999999999999999753
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00024 Score=78.76 Aligned_cols=100 Identities=24% Similarity=0.335 Sum_probs=64.6
Q ss_pred ceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHh----cccceeccccc-cC--CCC-C-Cccceeeec
Q 006905 470 YRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYER----GLVGTYTNWCE-AM--STY-P-RTYDLIHAD 539 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~r----gli~~~~~~~e-~~--~~y-p-~t~Dlih~~ 539 (626)
-.+|||||||.|+++.++++. + ...|+.+|.+++++..+.++ |+-..+..-+. .. ..+ + .+||.|.++
T Consensus 239 g~~VLDlcag~G~kt~~la~~~~--~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELAP--QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEc
Confidence 368999999999999998764 2 22688999998888876554 43101100111 11 111 2 789999864
Q ss_pred ------cccccCCC---CCC----------HHHHHHHhhhhccCCcEEEEE
Q 006905 540 ------SVFSLYKD---RCE----------TEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 540 ------~~f~~~~~---~c~----------~~~~l~E~dRiLRPgG~~i~~ 571 (626)
+++....+ +=. ...+|.++-|+|||||.++++
T Consensus 317 aPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvys 367 (426)
T TIGR00563 317 APCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYA 367 (426)
T ss_pred CCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 33332111 001 145999999999999999997
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00018 Score=79.79 Aligned_cols=116 Identities=19% Similarity=0.277 Sum_probs=72.9
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc-cceec-cccccCCCCC-Cccceeeecccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL-VGTYT-NWCEAMSTYP-RTYDLIHADSVF 542 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl-i~~~~-~~~e~~~~yp-~t~Dlih~~~~f 542 (626)
-..|||+|||.|+.+.++++..- -..|+.+|.++.++..+.++ |+ +.+++ |-.+....++ .+||.|-++--+
T Consensus 245 g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pc 323 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPC 323 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCC
Confidence 35799999999999999987621 03688999998888877554 22 22222 2221111133 789999855433
Q ss_pred ccCC------------CC-------CCHHHHHHHhhhhccCCcEEEEEc----ChHHHHHHHHHHHh
Q 006905 543 SLYK------------DR-------CETEDILLEMDRILRPEGGVIFRD----DVDELVKVKRIIDA 586 (626)
Q Consensus 543 ~~~~------------~~-------c~~~~~l~E~dRiLRPgG~~i~~d----~~~~~~~~~~~~~~ 586 (626)
+... .. .....+|.+.-++|||||+++++. ..+....++.++++
T Consensus 324 s~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~ 390 (427)
T PRK10901 324 SATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLAR 390 (427)
T ss_pred CcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHh
Confidence 3211 00 012358999999999999999874 23334455555544
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=8.1e-05 Score=74.84 Aligned_cols=114 Identities=18% Similarity=0.156 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhCC---cEEEeCCccchHHHHHHHHHHc----C---CCeEEEE
Q 006905 194 ADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSRN---IITMSFAPRDTHEAQVQFALER----G---VPALIGV 263 (626)
Q Consensus 194 a~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~~---V~avdis~~dls~a~i~~A~er----g---~~~~~~v 263 (626)
.+.+.+.+.+.-......+.+|||...|-|.++...++++ |++++.++.-+ ++|.-+ + ..+.+..
T Consensus 117 tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VL-----eLa~lNPwSr~l~~~~i~iil 191 (287)
T COG2521 117 TDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVL-----ELAKLNPWSRELFEIAIKIIL 191 (287)
T ss_pred cCcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeE-----EeeccCCCCccccccccEEec
Confidence 3445555555544445556799999999999999998884 56666655333 233211 1 1245566
Q ss_pred cccccC--CCCCCCeeEEEeccccccccccH--HHHHHHHHhcccCCeEEEEE
Q 006905 264 LAAERL--PYPSRAFDMAHCSRCLIPWNQFG--GIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 264 ~d~~~L--pf~d~sFDlV~~~~~l~h~~~~~--~~~L~Ei~RvLKPGG~lvis 312 (626)
+|+..+ .|+|.+||+|+--..-....... ..+.+|++|+|||||.++--
T Consensus 192 GD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHY 244 (287)
T COG2521 192 GDAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHY 244 (287)
T ss_pred ccHHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEE
Confidence 664433 47899999998533221111222 68899999999999998874
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00065 Score=70.78 Aligned_cols=143 Identities=13% Similarity=0.108 Sum_probs=83.0
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc--c--------cceec-cccccCCCCCCcccee
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG--L--------VGTYT-NWCEAMSTYPRTYDLI 536 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg--l--------i~~~~-~~~e~~~~yp~t~Dli 536 (626)
..-++||++|||.|+++..+++.+ -+.+|+-+|.++++++.+.+.- + +.+.+ |--+-+...+++||+|
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEE
Confidence 345699999999999999998775 1347788888878888776641 0 11111 1111111236899999
Q ss_pred eeccccccCCCC-CCHHHHHHHhhhhccCCcEEEEEcC-----hHHHHHHHHHHHhCCCeeEEeecC--CCCCCcceEEE
Q 006905 537 HADSVFSLYKDR-CETEDILLEMDRILRPEGGVIFRDD-----VDELVKVKRIIDALKWQSQIVDHE--DGPLEREKLLF 608 (626)
Q Consensus 537 h~~~~f~~~~~~-c~~~~~l~E~dRiLRPgG~~i~~d~-----~~~~~~~~~~~~~l~w~~~~~~~e--~~~~~~e~~l~ 608 (626)
-++......... --....+..+.|+|+|||.+++.-. .+.+..+.+.++..=..+..+..- .-+.+.-.+++
T Consensus 150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~v~~~~~~vp~~~~g~~~~~~ 229 (270)
T TIGR00417 150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFPITEYYTANIPTYPSGLWTFTI 229 (270)
T ss_pred EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCCCeEEEEEEcCccccchhEEEE
Confidence 886543221111 1135678899999999999998522 233444334333332223322211 11113356888
Q ss_pred EEe
Q 006905 609 AVK 611 (626)
Q Consensus 609 ~~K 611 (626)
|.|
T Consensus 230 as~ 232 (270)
T TIGR00417 230 GSK 232 (270)
T ss_pred EEC
Confidence 877
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0002 Score=74.69 Aligned_cols=82 Identities=12% Similarity=-0.008 Sum_probs=56.7
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcC--CCeEEEEcccccCCCC
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERG--VPALIGVLAAERLPYP 272 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg--~~~~~~v~d~~~Lpf~ 272 (626)
.++.+.+.+.... +.+|||||||+|.++..|+++ .++++|+++.++. .++++. ..+.+..+|+..++++
T Consensus 30 i~~~i~~~l~~~~--~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~-----~~~~~~~~~~v~~i~~D~~~~~~~ 102 (272)
T PRK00274 30 ILDKIVDAAGPQP--GDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAP-----ILAETFAEDNLTIIEGDALKVDLS 102 (272)
T ss_pred HHHHHHHhcCCCC--cCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHH-----HHHHhhccCceEEEEChhhcCCHH
Confidence 4455666554433 458999999999999999987 6888888765443 333321 3567778888888766
Q ss_pred CCCeeEEEecccc
Q 006905 273 SRAFDMAHCSRCL 285 (626)
Q Consensus 273 d~sFDlV~~~~~l 285 (626)
+-.+|.|+++...
T Consensus 103 ~~~~~~vv~NlPY 115 (272)
T PRK00274 103 ELQPLKVVANLPY 115 (272)
T ss_pred HcCcceEEEeCCc
Confidence 4336889888643
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00038 Score=74.26 Aligned_cols=102 Identities=20% Similarity=0.218 Sum_probs=67.4
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCC-e-EEEEcccccCCCCCCCeeEEEeccccc-
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVP-A-LIGVLAAERLPYPSRAFDMAHCSRCLI- 286 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~-~-~~~v~d~~~Lpf~d~sFDlV~~~~~l~- 286 (626)
+..+||==||||++.....-. .+++.|++..++..+..++-. .++. . ...+.|+..+|+++++||.|++-.-.-
T Consensus 198 G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~-y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPYGr 276 (347)
T COG1041 198 GELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEY-YGIEDYPVLKVLDATNLPLRDNSVDAIATDPPYGR 276 (347)
T ss_pred CCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhh-hCcCceeEEEecccccCCCCCCccceEEecCCCCc
Confidence 448999999999988776555 455555544333333222221 1332 2 233448999999999999999843220
Q ss_pred ----ccc--ccH-HHHHHHHHhcccCCeEEEEEeC
Q 006905 287 ----PWN--QFG-GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 287 ----h~~--~~~-~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.-. +.. ..+|..+.++|++||++++..|
T Consensus 277 st~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 277 STKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 111 112 6889999999999999999876
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00049 Score=71.59 Aligned_cols=97 Identities=21% Similarity=0.268 Sum_probs=64.4
Q ss_pred CCCEEEEeCCCCc----hHHHHHhhC---------CcEEEeCCccchHHHHHHHHHH---------cCCC----------
Q 006905 211 SIRTAIDTGCGVA----SWGAYLLSR---------NIITMSFAPRDTHEAQVQFALE---------RGVP---------- 258 (626)
Q Consensus 211 ~~~~VLDIGCGtG----~~a~~La~~---------~V~avdis~~dls~a~i~~A~e---------rg~~---------- 258 (626)
..-+|+-.||++| +++..|.+. .|.|+|++.. .++.|+. ++++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~-----~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~ 170 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLS-----VLEKARAGIYPSRELLRGLPPELLRRYFER 170 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHH-----HHHHHhcCCCChhHhhccCCHHHHhhhEee
Confidence 4568999999999 555555553 4566666553 3333321 1111
Q ss_pred ---------------eEEEEcccccCCCCCCCeeEEEeccccccccccH-HHHHHHHHhcccCCeEEEEE
Q 006905 259 ---------------ALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 259 ---------------~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis 312 (626)
+.|...+...-+...+.||+|+|.++++.+.... ..++..++..|+|||+|++-
T Consensus 171 ~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 171 GGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred cCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 2233333222222456799999999998776544 78999999999999999995
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00062 Score=71.49 Aligned_cols=102 Identities=15% Similarity=0.139 Sum_probs=67.0
Q ss_pred CCceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhc------c-----cceec-cccccCCCCCCccc
Q 006905 468 GRYRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERG------L-----VGTYT-NWCEAMSTYPRTYD 534 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rg------l-----i~~~~-~~~e~~~~yp~t~D 534 (626)
..-++|||+|||.|+.++.++++ ++ .+|+.+|..+.+++++.+.- + +.+++ |--+-+..-+++||
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~--~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD 152 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSV--EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFD 152 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCC--CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCccc
Confidence 34678999999999999999887 44 47888888888999887641 1 11222 11111122247999
Q ss_pred eeeeccccccCCCC-CCHHHHHHHhhhhccCCcEEEEE
Q 006905 535 LIHADSVFSLYKDR-CETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 535 lih~~~~f~~~~~~-c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
+|-++..-...... ---+.++.++.|+|+|||.+++.
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 153 VIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 99885321111110 01146788999999999999985
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00056 Score=71.17 Aligned_cols=154 Identities=18% Similarity=0.251 Sum_probs=91.7
Q ss_pred HHHHHHHhhcc--CCCCCCEEEEeCCCCchHHHHHhhCC--cEEEeCCccchHHHHHHHHHHc----C------------
Q 006905 197 YIDDIGKLINL--NDGSIRTAIDTGCGVASWGAYLLSRN--IITMSFAPRDTHEAQVQFALER----G------------ 256 (626)
Q Consensus 197 yi~~L~~ll~l--~~~~~~~VLDIGCGtG~~a~~La~~~--V~avdis~~dls~a~i~~A~er----g------------ 256 (626)
.++.|.+..+. ......+||--|||.|.++..++.++ +.+.+++..|+-. .++.... +
T Consensus 40 I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~--s~fiLn~~~~~~~~~I~Pf~~~~s 117 (270)
T PF07942_consen 40 ILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLA--SNFILNHCSQPNQFTIYPFVHSFS 117 (270)
T ss_pred HHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHH--HHHHHcccCCCCcEEEecceeccc
Confidence 44556666552 22334689999999999999999984 5666666655422 1222211 0
Q ss_pred -------------CC-------------eEEEEcccccCCCCC---CCeeEEEeccccccccccHHHHHHHHHhcccCCe
Q 006905 257 -------------VP-------------ALIGVLAAERLPYPS---RAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGG 307 (626)
Q Consensus 257 -------------~~-------------~~~~v~d~~~Lpf~d---~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG 307 (626)
+| .....+|...+..++ ++||+|++.+.+ .-..+.-.+|..|.++|||||
T Consensus 118 n~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFI-DTA~Ni~~Yi~tI~~lLkpgG 196 (270)
T PF07942_consen 118 NQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFI-DTAENIIEYIETIEHLLKPGG 196 (270)
T ss_pred CCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEe-echHHHHHHHHHHHHHhccCC
Confidence 00 111222222222223 689999987644 555555789999999999999
Q ss_pred EEEEEeCCCCcccccccccchhhhhHHHHHHHHHHHHhhchhhhcccc
Q 006905 308 YWILSGPPINWKKHARGWQRTKEDLNKEQTAIENVAKSLCWEKIKEKG 355 (626)
Q Consensus 308 ~lvis~pp~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v~~~~ 355 (626)
++|=.+|-.+ ...... ......+.-.++++..++++++|+.+.++.
T Consensus 197 ~WIN~GPLly-h~~~~~-~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 197 YWINFGPLLY-HFEPMS-IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred EEEecCCccc-cCCCCC-CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 8877776332 111110 011112333467788889999998776543
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00024 Score=73.76 Aligned_cols=101 Identities=18% Similarity=0.194 Sum_probs=63.6
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceeccccccCCCCCCccceeeecccccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYTNWCEAMSTYPRTYDLIHADSVFSL 544 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~~~~e~~~~yp~t~Dlih~~~~f~~ 544 (626)
.+|||+|||.|+++..|++.---.-.|+.+|.++.+++.+.++ |+ +.+++.=...+......||.|.++--.+.
T Consensus 73 ~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcsg 152 (264)
T TIGR00446 73 ERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCSG 152 (264)
T ss_pred CEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCCCC
Confidence 4699999999999988765310001488999998888766554 33 22333111122222256999987544332
Q ss_pred CC------C------CCC-------HHHHHHHhhhhccCCcEEEEE
Q 006905 545 YK------D------RCE-------TEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 545 ~~------~------~c~-------~~~~l~E~dRiLRPgG~~i~~ 571 (626)
.+ + .-+ ...+|.++-++|||||+++++
T Consensus 153 ~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYs 198 (264)
T TIGR00446 153 EGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYS 198 (264)
T ss_pred CcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 11 0 001 124899999999999999997
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00032 Score=67.34 Aligned_cols=104 Identities=17% Similarity=0.010 Sum_probs=75.0
Q ss_pred CCCCEEEEeCCCCchHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCC-----CCCCCeeEEEeccc
Q 006905 210 GSIRTAIDTGCGVASWGAYLLSRNIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLP-----YPSRAFDMAHCSRC 284 (626)
Q Consensus 210 ~~~~~VLDIGCGtG~~a~~La~~~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lp-----f~d~sFDlV~~~~~ 284 (626)
..+.-||++|.|+|.++..++++++.-.++...+.+........++.....+..+|+..+. +.+..||.|+|..-
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lP 126 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLP 126 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEeccc
Confidence 3455799999999999999999855444444444455566655555555556666655553 56778999999877
Q ss_pred cccccccH-HHHHHHHHhcccCCeEEEEEe
Q 006905 285 LIPWNQFG-GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 285 l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+..++... -++|.++...|++||.++.-.
T Consensus 127 ll~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 127 LLNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred cccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 65555443 578999999999999998864
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0002 Score=79.93 Aligned_cols=114 Identities=16% Similarity=0.260 Sum_probs=70.8
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceeccccccCCCC-C-Cccceeeec--
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYTNWCEAMSTY-P-RTYDLIHAD-- 539 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~~~~e~~~~y-p-~t~Dlih~~-- 539 (626)
-.+|||+|||.|+++.+|++.---...|+.+|.++.+++.+.++ |+ |.+. +.....+ | .+||.|-++
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~---~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETI---EGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEE---eCcccccccCCCCCEEEEcCC
Confidence 35799999999999887765300012688999999998866544 33 2222 2333333 3 789999854
Q ss_pred ----cccccCC------CCCCH-------HHHHHHhhhhccCCcEEEEEc----ChHHHHHHHHHHHh
Q 006905 540 ----SVFSLYK------DRCET-------EDILLEMDRILRPEGGVIFRD----DVDELVKVKRIIDA 586 (626)
Q Consensus 540 ----~~f~~~~------~~c~~-------~~~l~E~dRiLRPgG~~i~~d----~~~~~~~~~~~~~~ 586 (626)
++|.... ...++ ..+|.++-++|||||.++++. +.+.-..|+.++++
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~ 395 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQR 395 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHh
Confidence 2222110 00111 248999999999999999974 22334455566554
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0016 Score=63.94 Aligned_cols=144 Identities=20% Similarity=0.229 Sum_probs=91.3
Q ss_pred CCChhhchhh--hHHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHH--
Q 006905 437 GITPEIFQQN--SELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYE-- 512 (626)
Q Consensus 437 ~~~~~~f~~d--~~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~-- 512 (626)
|+..+.|..| ...-|+-|.- . .+..|.. ..--.++|+|||+|+.+-.++-. --...|.++|..+..++.+..
T Consensus 3 gipD~~F~~~~~~p~TK~EIRa-l-~ls~L~~-~~g~~l~DIGaGtGsi~iE~a~~-~p~~~v~AIe~~~~a~~~~~~N~ 78 (187)
T COG2242 3 GIPDELFERDEGGPMTKEEIRA-L-TLSKLRP-RPGDRLWDIGAGTGSITIEWALA-GPSGRVIAIERDEEALELIERNA 78 (187)
T ss_pred CCCchhhccCCCCCCcHHHHHH-H-HHHhhCC-CCCCEEEEeCCCccHHHHHHHHh-CCCceEEEEecCHHHHHHHHHHH
Confidence 3444556666 2333433331 1 1233443 33447999999999999887721 122468888887666654432
Q ss_pred -h-cc--cceeccc-cccCCCCCCccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEE-cChHHHHHHHHHHHh
Q 006905 513 -R-GL--VGTYTNW-CEAMSTYPRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFR-DDVDELVKVKRIIDA 586 (626)
Q Consensus 513 -r-gl--i~~~~~~-~e~~~~yp~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~-d~~~~~~~~~~~~~~ 586 (626)
| |+ +-++..+ =+.++.+| +||.|...+ . -+++.+|...-.-|||||.+|.. -+.+...++-+.++.
T Consensus 79 ~~fg~~n~~vv~g~Ap~~L~~~~-~~daiFIGG------g-~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~ 150 (187)
T COG2242 79 ARFGVDNLEVVEGDAPEALPDLP-SPDAIFIGG------G-GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQ 150 (187)
T ss_pred HHhCCCcEEEEeccchHhhcCCC-CCCEEEECC------C-CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHH
Confidence 2 21 1233322 23344455 888887633 2 47789999999999999999996 567888888888999
Q ss_pred CCC-eeE
Q 006905 587 LKW-QSQ 592 (626)
Q Consensus 587 l~w-~~~ 592 (626)
+.+ ++.
T Consensus 151 ~g~~ei~ 157 (187)
T COG2242 151 LGGREIV 157 (187)
T ss_pred cCCceEE
Confidence 999 554
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00027 Score=78.72 Aligned_cols=122 Identities=17% Similarity=0.247 Sum_probs=74.7
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceec-cccccCCCCCCccceeeecccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYT-NWCEAMSTYPRTYDLIHADSVF 542 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~-~~~e~~~~yp~t~Dlih~~~~f 542 (626)
-.+|||+|||.|+++.++++.---...|+.+|.++++++.+.++ |+ +.+.+ |..+....++++||+|-++--.
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pc 330 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDAPC 330 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcCCC
Confidence 35799999999999998886410012688899988888877553 33 23333 2222222345899999875332
Q ss_pred ccCC------------CCCCH-------HHHHHHhhhhccCCcEEEEEc----ChHHHHHHHHHHHhC-CCee
Q 006905 543 SLYK------------DRCET-------EDILLEMDRILRPEGGVIFRD----DVDELVKVKRIIDAL-KWQS 591 (626)
Q Consensus 543 ~~~~------------~~c~~-------~~~l~E~dRiLRPgG~~i~~d----~~~~~~~~~~~~~~l-~w~~ 591 (626)
+..+ ...++ ..+|.++-|+|||||.++++- ..+....++.+++.. .|+.
T Consensus 331 sg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~ 403 (444)
T PRK14902 331 SGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFEL 403 (444)
T ss_pred CCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEE
Confidence 2111 00111 348999999999999999752 123344555555553 2443
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00074 Score=72.92 Aligned_cols=147 Identities=11% Similarity=0.070 Sum_probs=86.7
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh--------c-c----cceec-cccccCCCCCCcc
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER--------G-L----VGTYT-NWCEAMSTYPRTY 533 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r--------g-l----i~~~~-~~~e~~~~yp~t~ 533 (626)
..-++||++|||.|+.++.+++.+ -+.+|+.+|.++.+++++.+. | + +.+.+ |-.+-+..-++.|
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 446799999999999999998874 235788888888999999862 1 1 11111 1111112224789
Q ss_pred ceeeeccccccC--CCCCCHHHHHHHhhhhccCCcEEEEEcCh-----HHHHHHHHHHHhCCCeeEEeecCCCCC-Ccce
Q 006905 534 DLIHADSVFSLY--KDRCETEDILLEMDRILRPEGGVIFRDDV-----DELVKVKRIIDALKWQSQIVDHEDGPL-EREK 605 (626)
Q Consensus 534 Dlih~~~~f~~~--~~~c~~~~~l~E~dRiLRPgG~~i~~d~~-----~~~~~~~~~~~~l~w~~~~~~~e~~~~-~~e~ 605 (626)
|+|-++..-... ..+---...+..+.|.|+|||.+++.... +....+.+.++..-..+..+.+---.. ..-.
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~Wg 307 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTDWG 307 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCCceE
Confidence 999987321111 11111145888999999999999886432 222334444444444443222211111 1266
Q ss_pred EEEEEecccC
Q 006905 606 LLFAVKLYWT 615 (626)
Q Consensus 606 ~l~~~K~~w~ 615 (626)
+++|.|....
T Consensus 308 F~~as~~~~~ 317 (374)
T PRK01581 308 FHIAANSAYV 317 (374)
T ss_pred EEEEeCCccc
Confidence 8888776554
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00055 Score=70.50 Aligned_cols=80 Identities=16% Similarity=0.153 Sum_probs=53.8
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHc---CCCeEEEEcccccCCC
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALER---GVPALIGVLAAERLPY 271 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~er---g~~~~~~v~d~~~Lpf 271 (626)
..+.+.+.+.... +.+|||||||+|.++..|+++ .++++|+++..+ +.+.++ ...+.+...|+..+++
T Consensus 17 i~~~i~~~~~~~~--~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~-----~~l~~~~~~~~~v~v~~~D~~~~~~ 89 (253)
T TIGR00755 17 VIQKIVEAANVLE--GDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLA-----EILRKLLSLYERLEVIEGDALKVDL 89 (253)
T ss_pred HHHHHHHhcCCCC--cCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHH-----HHHHHHhCcCCcEEEEECchhcCCh
Confidence 4445555554333 458999999999999999986 678888866433 333322 2345677778877776
Q ss_pred CCCCee---EEEecccc
Q 006905 272 PSRAFD---MAHCSRCL 285 (626)
Q Consensus 272 ~d~sFD---lV~~~~~l 285 (626)
+ .|| +|+++..+
T Consensus 90 ~--~~d~~~~vvsNlPy 104 (253)
T TIGR00755 90 P--DFPKQLKVVSNLPY 104 (253)
T ss_pred h--HcCCcceEEEcCCh
Confidence 5 466 88887654
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00025 Score=78.88 Aligned_cols=119 Identities=17% Similarity=0.294 Sum_probs=74.0
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cccceeccccccCCCC-------CCccceeeec
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GLVGTYTNWCEAMSTY-------PRTYDLIHAD 539 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gli~~~~~~~e~~~~y-------p~t~Dlih~~ 539 (626)
.+|||+|||.|+.+.+|++.---...|+.+|.++.+++.+.++ |+ ..+.-.+.....+ +.+||.|-++
T Consensus 254 ~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~D 332 (434)
T PRK14901 254 EVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL-KSIKILAADSRNLLELKPQWRGYFDRILLD 332 (434)
T ss_pred CEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC-CeEEEEeCChhhcccccccccccCCEEEEe
Confidence 5699999999999998876410012588889988888876554 32 1111112223222 3689998864
Q ss_pred c------ccccCCC---C---CC-------HHHHHHHhhhhccCCcEEEEEc----ChHHHHHHHHHHHhC-CCe
Q 006905 540 S------VFSLYKD---R---CE-------TEDILLEMDRILRPEGGVIFRD----DVDELVKVKRIIDAL-KWQ 590 (626)
Q Consensus 540 ~------~f~~~~~---~---c~-------~~~~l~E~dRiLRPgG~~i~~d----~~~~~~~~~~~~~~l-~w~ 590 (626)
- ++.+-.+ + .+ ...+|.++-|+|||||+++++. +.+....|+.++++. .|+
T Consensus 333 aPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~ 407 (434)
T PRK14901 333 APCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWK 407 (434)
T ss_pred CCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcE
Confidence 2 3321110 0 11 2468999999999999999873 234556666666654 354
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00045 Score=74.27 Aligned_cols=111 Identities=17% Similarity=0.211 Sum_probs=69.6
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHc---------CCCeEEEE
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALER---------GVPALIGV 263 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~er---------g~~~~~~v 263 (626)
|.+.+....-......++||.||+|.|..+..+++. .++++|+++. .++.+++. ...+.+..
T Consensus 89 YhE~l~h~~l~~~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~-----vv~lar~~~~~~~~~~~dprv~v~~ 163 (336)
T PLN02823 89 YHESLVHPALLHHPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQE-----VVDFCRKHLTVNREAFCDKRLELII 163 (336)
T ss_pred HHHHHHhHHHhhCCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHH-----HHHHHHHhcccccccccCCceEEEE
Confidence 444444332222334568999999999999888774 5778888663 44444432 12355666
Q ss_pred ccccc-CCCCCCCeeEEEeccccccccc------cHHHHHH-HHHhcccCCeEEEEEe
Q 006905 264 LAAER-LPYPSRAFDMAHCSRCLIPWNQ------FGGIYLI-EVDRVLRPGGYWILSG 313 (626)
Q Consensus 264 ~d~~~-Lpf~d~sFDlV~~~~~l~h~~~------~~~~~L~-Ei~RvLKPGG~lvis~ 313 (626)
.|... +....++||+|++-. ..++.. ....+++ .+.+.|+|||.+++..
T Consensus 164 ~Da~~~L~~~~~~yDvIi~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 164 NDARAELEKRDEKFDVIIGDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred ChhHHHHhhCCCCccEEEecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 66433 333457899999853 222211 0146777 8999999999998864
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00031 Score=78.05 Aligned_cols=116 Identities=16% Similarity=0.188 Sum_probs=72.7
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceec-cccccCCCC-CCccceeeeccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYT-NWCEAMSTY-PRTYDLIHADSV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~-~~~e~~~~y-p~t~Dlih~~~~ 541 (626)
-.+|||||||.||.+.++++.---...|+.+|.++.++..+.++ |+ +.+.+ |.. .+..+ +++||.|-++--
T Consensus 238 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~-~l~~~~~~~fD~Vl~DaP 316 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAE-RLTEYVQDTFDRILVDAP 316 (431)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchh-hhhhhhhccCCEEEECCC
Confidence 35799999999999988876410012689999999999887655 33 22222 222 22222 378999987543
Q ss_pred cccCCC---CC----------------CHHHHHHHhhhhccCCcEEEEE----cChHHHHHHHHHHHh
Q 006905 542 FSLYKD---RC----------------ETEDILLEMDRILRPEGGVIFR----DDVDELVKVKRIIDA 586 (626)
Q Consensus 542 f~~~~~---~c----------------~~~~~l~E~dRiLRPgG~~i~~----d~~~~~~~~~~~~~~ 586 (626)
-|..+. += ....+|.+.-+.|||||.++++ ...+....|+.+++.
T Consensus 317 Csg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~ 384 (431)
T PRK14903 317 CTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYE 384 (431)
T ss_pred CCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHh
Confidence 332211 00 1134788999999999999997 233444455555543
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0024 Score=63.07 Aligned_cols=132 Identities=13% Similarity=0.017 Sum_probs=73.2
Q ss_pred CCceecCCCCCCCCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHH
Q 006905 178 GDRFRFPGGGTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALE 254 (626)
Q Consensus 178 ge~~~Fp~ggt~F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~e 254 (626)
|..+..|.+....+.. +...+.+..++... -.+.++||++||+|.++..++.+ .++++|.++....... +.+..
T Consensus 18 g~~l~~p~~~~~rpt~-~~vrea~f~~l~~~-~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~-~N~~~ 94 (189)
T TIGR00095 18 GRLLKLPPGGSTRPTT-RVVRELFFNILRPE-IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLK-ENLAL 94 (189)
T ss_pred CcccCCCCCCCCCCch-HHHHHHHHHHHHHh-cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHH
Confidence 3444455544333222 22223344444311 12458999999999999999987 4788888764443222 33333
Q ss_pred cCCC--eEEEEccccc-CC-C-CC-CCeeEEEeccccccccccHHHHHHHHH--hcccCCeEEEEEeC
Q 006905 255 RGVP--ALIGVLAAER-LP-Y-PS-RAFDMAHCSRCLIPWNQFGGIYLIEVD--RVLRPGGYWILSGP 314 (626)
Q Consensus 255 rg~~--~~~~v~d~~~-Lp-f-~d-~sFDlV~~~~~l~h~~~~~~~~L~Ei~--RvLKPGG~lvis~p 314 (626)
.+.. +.+...|+.. +. + .. ..||+|+.-..+. . ......+..+. .+|+++|.+++...
T Consensus 95 ~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~-~-~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 95 LKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFF-N-GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred hCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCC-C-CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 4442 4566666532 22 1 12 2478888766441 1 11234444443 47999999888754
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00018 Score=74.80 Aligned_cols=97 Identities=11% Similarity=0.146 Sum_probs=70.2
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-cceeccccccCCCCC--CccceeeeccccccCCC
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-VGTYTNWCEAMSTYP--RTYDLIHADSVFSLYKD 547 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-i~~~~~~~e~~~~yp--~t~Dlih~~~~f~~~~~ 547 (626)
.+|||+|||.|.++..++.+. -..+|+.+|.++.+++.+.++-- +.++ +..+..++ ++||+|-++--|.+...
T Consensus 66 grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~~~v~~v---~~D~~e~~~~~kFDlIIsNPPF~~l~~ 141 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLLPEAEWI---TSDVFEFESNEKFDVVISNPPFGKINT 141 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcCCEEE---ECchhhhcccCCCcEEEEcCCccccCc
Confidence 479999999999998887641 01378999999999999877521 2222 34455554 78999999888875321
Q ss_pred -------C---------C-CHHHHHHHhhhhccCCcEEEEE
Q 006905 548 -------R---------C-ETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 548 -------~---------c-~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
+ + .+...+...-++|+|+|.+++-
T Consensus 142 ~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 142 TDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred hhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 1 1 1467888889999999988774
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00066 Score=68.03 Aligned_cols=134 Identities=16% Similarity=0.145 Sum_probs=80.3
Q ss_pred HHHHHHHHHhhccCCC--CCCEEEEeCCCCchHHHHHhh-CCcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCC
Q 006905 195 DAYIDDIGKLINLNDG--SIRTAIDTGCGVASWGAYLLS-RNIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPY 271 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~--~~~~VLDIGCGtG~~a~~La~-~~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf 271 (626)
.-.++.|.+....... ...++|||||=+......-.. -+|+.+|+.+. ..+ +...|....|.
T Consensus 33 K~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~~fdvt~IDLns~-----------~~~----I~qqDFm~rpl 97 (219)
T PF11968_consen 33 KWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSGWFDVTRIDLNSQ-----------HPG----ILQQDFMERPL 97 (219)
T ss_pred HHHHHHhhhhccccccccccceEEeecccCCCCcccccCceeeEEeecCCC-----------CCC----ceeeccccCCC
Confidence 3344455544432211 235899999875543322111 15777777442 112 33557666665
Q ss_pred C---CCCeeEEEeccccccccccH--HHHHHHHHhcccCCeE-----EEEEeCCCCcccccccccchhhhhHHHHHHHHH
Q 006905 272 P---SRAFDMAHCSRCLIPWNQFG--GIYLIEVDRVLRPGGY-----WILSGPPINWKKHARGWQRTKEDLNKEQTAIEN 341 (626)
Q Consensus 272 ~---d~sFDlV~~~~~l~h~~~~~--~~~L~Ei~RvLKPGG~-----lvis~pp~~w~~~~~~w~~~~e~l~~~~~~ie~ 341 (626)
| ++.||+|.|+.+|...++.. +.+++.+.+.|+|+|. |+|+.|..- ..... +-..+.+..
T Consensus 98 p~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C--v~NSR--------y~~~~~l~~ 167 (219)
T PF11968_consen 98 PKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC--VTNSR--------YMTEERLRE 167 (219)
T ss_pred CCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH--hhccc--------ccCHHHHHH
Confidence 3 67899999999995444322 7899999999999999 888866321 11111 111345667
Q ss_pred HHHhhchhhhcc
Q 006905 342 VAKSLCWEKIKE 353 (626)
Q Consensus 342 l~~~l~w~~v~~ 353 (626)
+...+++..+..
T Consensus 168 im~~LGf~~~~~ 179 (219)
T PF11968_consen 168 IMESLGFTRVKY 179 (219)
T ss_pred HHHhCCcEEEEE
Confidence 778888876654
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0007 Score=69.16 Aligned_cols=105 Identities=20% Similarity=0.309 Sum_probs=71.8
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceeccccccCCCCC---CccceeeeccccccCCC
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYP---RTYDLIHADSVFSLYKD 547 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~yp---~t~Dlih~~~~f~~~~~ 547 (626)
-.|-|||||-+-.|.. ...+|..|.+++++.. +|. | .+...| +|.|++.+- +|...
T Consensus 182 ~vIaD~GCGEakiA~~-~~~kV~SfDL~a~~~~-----------V~~-----c-Dm~~vPl~d~svDvaV~C--LSLMg- 240 (325)
T KOG3045|consen 182 IVIADFGCGEAKIASS-ERHKVHSFDLVAVNER-----------VIA-----C-DMRNVPLEDESVDVAVFC--LSLMG- 240 (325)
T ss_pred eEEEecccchhhhhhc-cccceeeeeeecCCCc-----------eee-----c-cccCCcCccCcccEEEee--Hhhhc-
Confidence 3589999999988762 2346888888888654 111 1 223344 999986641 22222
Q ss_pred CCCHHHHHHHhhhhccCCcEEEEEcChHH---HHHHHHHHHhCCCeeEEeecC
Q 006905 548 RCETEDILLEMDRILRPEGGVIFRDDVDE---LVKVKRIIDALKWQSQIVDHE 597 (626)
Q Consensus 548 ~c~~~~~l~E~dRiLRPgG~~i~~d~~~~---~~~~~~~~~~l~w~~~~~~~e 597 (626)
-++.+.+.|..|||||||.++|.+-..- .....+-+..|..++.-.|.+
T Consensus 241 -tn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~~ 292 (325)
T KOG3045|consen 241 -TNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDVS 292 (325)
T ss_pred -ccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhhh
Confidence 3778999999999999999999865533 333555578888887765544
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00025 Score=76.83 Aligned_cols=99 Identities=18% Similarity=0.263 Sum_probs=71.6
Q ss_pred CCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCCCCCCCeeEEEeccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLPYPSRAFDMAHCSRCLI 286 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~ 286 (626)
+..++|+|||.|....+.+.. ++++++..+........... ..++ ...+...+....||++++||.|.+..+..
T Consensus 111 ~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~-~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~ 189 (364)
T KOG1269|consen 111 GSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAK-KAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVC 189 (364)
T ss_pred cccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHH-HHHhhhhcceehhhhhcCCCCccccCcEEEEeecc
Confidence 337999999999777766653 66766665543333322221 1122 13346667888999999999999999886
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEE
Q 006905 287 PWNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 287 h~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
|... ...++.|+.|+++|||+++..
T Consensus 190 ~~~~-~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 190 HAPD-LEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred cCCc-HHHHHHHHhcccCCCceEEeH
Confidence 6554 699999999999999999985
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00018 Score=72.76 Aligned_cols=100 Identities=16% Similarity=0.269 Sum_probs=76.2
Q ss_pred eEEeccCchhhHhhhhhCCCe-EEEEeccCccCcccHHHHHHhcc------cceeccccccCCCCC---Cccceeeeccc
Q 006905 472 NILDMNAHLGGFAAALIDFPV-WVMNVVPAEAKINTLGVIYERGL------VGTYTNWCEAMSTYP---RTYDLIHADSV 541 (626)
Q Consensus 472 ~vlD~g~g~G~faa~l~~~~v-~~mnv~~~~~~~~~l~~~~~rgl------i~~~~~~~e~~~~yp---~t~Dlih~~~~ 541 (626)
+||.+|||.|.---=|++..- --+.|..-|-+++.+.+.-++-- -..++|.+..=...| .++|+|.+--+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv 153 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV 153 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence 799999999987776765421 11357778888888887766654 235556665544444 99999999999
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
||..... .+..+|..+.|+|||||.+++||
T Consensus 154 LSAi~pe-k~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 154 LSAIHPE-KMQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred EeccChH-HHHHHHHHHHHHhCCCcEEEEee
Confidence 9987743 57889999999999999999997
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00029 Score=75.29 Aligned_cols=93 Identities=18% Similarity=0.116 Sum_probs=60.5
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cccceeccccccCCCC-C--Cccceeeecccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GLVGTYTNWCEAMSTY-P--RTYDLIHADSVF 542 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gli~~~~~~~e~~~~y-p--~t~Dlih~~~~f 542 (626)
-.+|||+|||+|.+++.|++.---.-.|+.+|.++.+++.+.++ |+ ..++..+...... + ..||+|.+..
T Consensus 81 g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~~~~~fD~Ii~~~-- 157 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVPEFAPYDVIFVTV-- 157 (322)
T ss_pred CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcccccCCccEEEECC--
Confidence 35799999999999999986410001377888888888877653 43 1112122332222 2 6799999832
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
....+...+.++|||||.+++-.
T Consensus 158 -------g~~~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 158 -------GVDEVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred -------chHHhHHHHHHhcCCCCEEEEEe
Confidence 33445556788999999998853
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0004 Score=77.39 Aligned_cols=128 Identities=19% Similarity=0.299 Sum_probs=71.6
Q ss_pred cCCChhhchhhhHHHHH---HHHHHHHhhhhcCCCCC----ceeEEeccCchhhHhhhhhCCC---eEEEEeccCccCcc
Q 006905 436 KGITPEIFQQNSELWKK---RLSYYKTMNNQLGQSGR----YRNILDMNAHLGGFAAALIDFP---VWVMNVVPAEAKIN 505 (626)
Q Consensus 436 ~~~~~~~f~~d~~~w~~---~v~~y~~~~~~~~~~~~----~r~vlD~g~g~G~faa~l~~~~---v~~mnv~~~~~~~~ 505 (626)
...+.|.|+.|.-++.. .|.. .+...+.. .+ ..+|||+|||.|-....-++-+ .-...|.+++.+++
T Consensus 149 ~s~tYe~fE~D~vKY~~Ye~AI~~--al~D~~~~-~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~ 225 (448)
T PF05185_consen 149 ESQTYEVFEKDPVKYDQYERAIEE--ALKDRVRK-NSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPN 225 (448)
T ss_dssp -HHHHHHHCC-HHHHHHHHHHHHH--HHHHHHTT-S-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTH
T ss_pred ccccHhhHhcCHHHHHHHHHHHHH--HHHhhhhh-ccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHh
Confidence 33478999999854443 3322 22222333 32 3569999999999863332211 01125666666544
Q ss_pred cHHH----HHHhcc---cceeccccccCCCC--CCccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEE
Q 006905 506 TLGV----IYERGL---VGTYTNWCEAMSTY--PRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIF 570 (626)
Q Consensus 506 ~l~~----~~~rgl---i~~~~~~~e~~~~y--p~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~ 570 (626)
.... +.+.|+ |.++| +..... |.-.|+|.+ -++........++.+|.-.+|.|+|||.+|=
T Consensus 226 A~~~l~~~v~~n~w~~~V~vi~---~d~r~v~lpekvDIIVS-ElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP 295 (448)
T PF05185_consen 226 AVVTLQKRVNANGWGDKVTVIH---GDMREVELPEKVDIIVS-ELLGSFGDNELSPECLDAADRFLKPDGIMIP 295 (448)
T ss_dssp HHHHHHHHHHHTTTTTTEEEEE---S-TTTSCHSS-EEEEEE----BTTBTTTSHHHHHHHGGGGEEEEEEEES
T ss_pred HHHHHHHHHHhcCCCCeEEEEe---CcccCCCCCCceeEEEE-eccCCccccccCHHHHHHHHhhcCCCCEEeC
Confidence 3322 234444 66666 444443 689999997 4444444444778899999999999998763
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0007 Score=75.50 Aligned_cols=97 Identities=16% Similarity=0.180 Sum_probs=58.6
Q ss_pred CCEEEEeCCCCchHHHHHhh--------CCcEEEeCCccchHHHHHHHHHHcC--CCeEEEEcccccCCCCCCCeeEEEe
Q 006905 212 IRTAIDTGCGVASWGAYLLS--------RNIITMSFAPRDTHEAQVQFALERG--VPALIGVLAAERLPYPSRAFDMAHC 281 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~--------~~V~avdis~~dls~a~i~~A~erg--~~~~~~v~d~~~Lpf~d~sFDlV~~ 281 (626)
...|||||||+|.+....++ ..|.+++-++.... ...+....++ -.+.+...|++.+..+. ..|+|++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~-~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVV-TLQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHH-HHHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHH-HHHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEE
Confidence 46899999999977654433 26888887663232 1122223444 35777888888877654 8999998
Q ss_pred ccccc-cccccHHHHHHHHHhcccCCeEEE
Q 006905 282 SRCLI-PWNQFGGIYLIEVDRVLRPGGYWI 310 (626)
Q Consensus 282 ~~~l~-h~~~~~~~~L~Ei~RvLKPGG~lv 310 (626)
-..=. ...+-....|....|.|||||.++
T Consensus 265 ElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 265 ELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred eccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 33210 111122567889999999998775
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0014 Score=69.29 Aligned_cols=85 Identities=18% Similarity=0.216 Sum_probs=57.3
Q ss_pred HHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcC--CCeEEEEcccccCCC
Q 006905 196 AYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERG--VPALIGVLAAERLPY 271 (626)
Q Consensus 196 ~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg--~~~~~~v~d~~~Lpf 271 (626)
..++.|.+.+.... +.+|||||||+|.++..|++. .++++|+++..+.....+++ ..+ ..+.+...|+...++
T Consensus 23 ~i~~~Iv~~~~~~~--~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~-~~~~~~~v~ii~~Dal~~~~ 99 (294)
T PTZ00338 23 LVLDKIVEKAAIKP--TDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQ-NSPLASKLEVIEGDALKTEF 99 (294)
T ss_pred HHHHHHHHhcCCCC--cCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHH-hcCCCCcEEEEECCHhhhcc
Confidence 34455666554443 458999999999999999886 68889987754443333332 222 246677777766554
Q ss_pred CCCCeeEEEecccc
Q 006905 272 PSRAFDMAHCSRCL 285 (626)
Q Consensus 272 ~d~sFDlV~~~~~l 285 (626)
..||+|+++...
T Consensus 100 --~~~d~VvaNlPY 111 (294)
T PTZ00338 100 --PYFDVCVANVPY 111 (294)
T ss_pred --cccCEEEecCCc
Confidence 368999998755
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00076 Score=69.74 Aligned_cols=115 Identities=18% Similarity=0.255 Sum_probs=65.2
Q ss_pred HHHHHhhccCCCCCCEEEEeCCCCchHHHHHh-hC--CcEEEeCCccchHHHHH--------------HH-HHHcCC---
Q 006905 199 DDIGKLINLNDGSIRTAIDTGCGVASWGAYLL-SR--NIITMSFAPRDTHEAQV--------------QF-ALERGV--- 257 (626)
Q Consensus 199 ~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La-~~--~V~avdis~~dls~a~i--------------~~-A~erg~--- 257 (626)
+.+.+.+......+.++||||||.-.+-..-+ +. +++..|+++.+..+-.. +. +...|.
T Consensus 44 ~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~ 123 (256)
T PF01234_consen 44 KNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREK 123 (256)
T ss_dssp HHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSG
T ss_pred HHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcch
Confidence 34455554444456799999999864432222 22 78888887744432111 11 000110
Q ss_pred ----------Ce-EEEEccccc-CCCCC-----CCeeEEEeccccccccccH---HHHHHHHHhcccCCeEEEEEe
Q 006905 258 ----------PA-LIGVLAAER-LPYPS-----RAFDMAHCSRCLIPWNQFG---GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 258 ----------~~-~~~v~d~~~-Lpf~d-----~sFDlV~~~~~l~h~~~~~---~~~L~Ei~RvLKPGG~lvis~ 313 (626)
.+ .+...|... -|+.. ..||+|++.+|++--..+. ..+++.+.++|||||+|++.+
T Consensus 124 ~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 124 WEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp HHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 01 133345433 33433 3599999999997666555 578999999999999999975
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0013 Score=65.46 Aligned_cols=102 Identities=14% Similarity=0.086 Sum_probs=63.7
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----Cc--EEEeCCccchHHHHHHHHHHc---------------CCC
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NI--ITMSFAPRDTHEAQVQFALER---------------GVP 258 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V--~avdis~~dls~a~i~~A~er---------------g~~ 258 (626)
.+.++|...-.++.++||+|.|+|.++..++.. +. .+++. .+..++.+.++ ...
T Consensus 71 ~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh-----~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~ 145 (237)
T KOG1661|consen 71 TALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEH-----IPELVEYSKKNLDKDITTSESSSKLKRGE 145 (237)
T ss_pred HHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhh-----hHHHHHHHHHHHHhhccCchhhhhhccCc
Confidence 344444422223558999999999888776642 33 44443 44444444322 112
Q ss_pred eEEEEcccccCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 259 ALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 259 ~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
..+.++|....--+...||.|||.... ....+++...|+|||.+++-.
T Consensus 146 l~ivvGDgr~g~~e~a~YDaIhvGAaa-------~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 146 LSIVVGDGRKGYAEQAPYDAIHVGAAA-------SELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred eEEEeCCccccCCccCCcceEEEccCc-------cccHHHHHHhhccCCeEEEee
Confidence 445567765555566789999997533 345677888899999999964
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.001 Score=64.72 Aligned_cols=110 Identities=19% Similarity=0.279 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhhc-cCCCCCCEEEEeCCCCchHHHHHhhCC-----cEEEeCCccchHHHHHHHHHHcCCCeEEEEcc--
Q 006905 194 ADAYIDDIGKLIN-LNDGSIRTAIDTGCGVASWGAYLLSRN-----IITMSFAPRDTHEAQVQFALERGVPALIGVLA-- 265 (626)
Q Consensus 194 a~~yi~~L~~ll~-l~~~~~~~VLDIGCGtG~~a~~La~~~-----V~avdis~~dls~a~i~~A~erg~~~~~~v~d-- 265 (626)
+...+.++.+... ...+...++||+||++|.|+..+.++. |+++|+.+.... .+ .....+|
T Consensus 5 a~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~---------~~--~~~i~~d~~ 73 (181)
T PF01728_consen 5 AAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL---------QN--VSFIQGDIT 73 (181)
T ss_dssp HHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS----------TT--EEBTTGGGE
T ss_pred HHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccc---------cc--eeeeecccc
Confidence 3334445555555 344456799999999999999999874 788888664111 11 1111111
Q ss_pred ----cccC----CCCCCCeeEEEeccccc---cccccH-------HHHHHHHHhcccCCeEEEEEeC
Q 006905 266 ----AERL----PYPSRAFDMAHCSRCLI---PWNQFG-------GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 266 ----~~~L----pf~d~sFDlV~~~~~l~---h~~~~~-------~~~L~Ei~RvLKPGG~lvis~p 314 (626)
...+ +-....||+|+|-.+.. +...+. ...+.-+...|+|||.|++-..
T Consensus 74 ~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 74 NPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp EEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred hhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 1111 11126899999966331 111111 2345556678999999998753
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0029 Score=66.05 Aligned_cols=140 Identities=21% Similarity=0.316 Sum_probs=90.8
Q ss_pred CCCCEEEEeCCCCchHHHHHhhC------CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEccccc---CCCCCCCeeE
Q 006905 210 GSIRTAIDTGCGVASWGAYLLSR------NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAER---LPYPSRAFDM 278 (626)
Q Consensus 210 ~~~~~VLDIGCGtG~~a~~La~~------~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~---Lpf~d~sFDl 278 (626)
+..-+||||.||.|..-...+.. .+...|+++..+. .-.+.++++|.. +.|...|+.. +.--+-..++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~-~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVE-KGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHH-HHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence 44568999999999665544432 4667788775444 334456677875 3677776433 2212345789
Q ss_pred EEeccccccccccH--HHHHHHHHhcccCCeEEEEEeCCCCccccc-----------ccccchhhhhHHHHHHHHHHHHh
Q 006905 279 AHCSRCLIPWNQFG--GIYLIEVDRVLRPGGYWILSGPPINWKKHA-----------RGWQRTKEDLNKEQTAIENVAKS 345 (626)
Q Consensus 279 V~~~~~l~h~~~~~--~~~L~Ei~RvLKPGG~lvis~pp~~w~~~~-----------~~w~~~~e~l~~~~~~ie~l~~~ 345 (626)
++.+..++-+.++. ...|.-+.+.|.|||++|.++-|.+-..+. ..|.-. +..+.+|+.+...
T Consensus 213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMR----rRsq~EmD~Lv~~ 288 (311)
T PF12147_consen 213 AIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMR----RRSQAEMDQLVEA 288 (311)
T ss_pred EEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEE----ecCHHHHHHHHHH
Confidence 99999776666543 457889999999999999998665432211 123211 2235568888888
Q ss_pred hchhhhccc
Q 006905 346 LCWEKIKEK 354 (626)
Q Consensus 346 l~w~~v~~~ 354 (626)
-+++++.+.
T Consensus 289 aGF~K~~q~ 297 (311)
T PF12147_consen 289 AGFEKIDQR 297 (311)
T ss_pred cCCchhhhe
Confidence 888777643
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0005 Score=68.42 Aligned_cols=128 Identities=16% Similarity=0.264 Sum_probs=74.7
Q ss_pred chhhhHHHHHHHHHHH-HhhhhcCCCCCceeEEeccCchh----hHhhhhhC--C--CeEEEEeccCccCcccHHHHHHh
Q 006905 443 FQQNSELWKKRLSYYK-TMNNQLGQSGRYRNILDMNAHLG----GFAAALID--F--PVWVMNVVPAEAKINTLGVIYER 513 (626)
Q Consensus 443 f~~d~~~w~~~v~~y~-~~~~~~~~~~~~r~vlD~g~g~G----~faa~l~~--~--~v~~mnv~~~~~~~~~l~~~~~r 513 (626)
|--|...|..-.+... .++..... ++.-+|..+||++| +.|..|.+ . .-|-+.|.++|.++..|+.| .+
T Consensus 5 FFRd~~~f~~l~~~vlp~~~~~~~~-~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~A-r~ 82 (196)
T PF01739_consen 5 FFRDPEQFEALRDEVLPPLLARARP-GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKA-RA 82 (196)
T ss_dssp TTTTTTHHHHHHHHHH-------CS--S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHH-HH
T ss_pred ccCCHHHHHHHHHHHHHhhccccCC-CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHH-Hh
Confidence 5556666766554433 22322233 46678999999999 45555555 1 23567999999998888875 34
Q ss_pred cccc------------------------------------eeccccccCCCCCCccceeeeccccccCCCCCCHHHHHHH
Q 006905 514 GLVG------------------------------------TYTNWCEAMSTYPRTYDLIHADSVFSLYKDRCETEDILLE 557 (626)
Q Consensus 514 gli~------------------------------------~~~~~~e~~~~yp~t~Dlih~~~~f~~~~~~c~~~~~l~E 557 (626)
|..+ ..|+.++ ....+..||+|-|-.||-+.... ....++.-
T Consensus 83 G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~~~-~~~~vl~~ 160 (196)
T PF01739_consen 83 GIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFDPE-TQQRVLRR 160 (196)
T ss_dssp TEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS-HH-HHHHHHHH
T ss_pred CCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeCHH-HHHHHHHH
Confidence 4421 2344444 22233999999999999987642 44779999
Q ss_pred hhhhccCCcEEEEEcCh
Q 006905 558 MDRILRPEGGVIFRDDV 574 (626)
Q Consensus 558 ~dRiLRPgG~~i~~d~~ 574 (626)
+.+.|+|||++++....
T Consensus 161 l~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 161 LHRSLKPGGYLFLGHSE 177 (196)
T ss_dssp HGGGEEEEEEEEE-TT-
T ss_pred HHHHcCCCCEEEEecCc
Confidence 99999999999997554
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00057 Score=65.91 Aligned_cols=95 Identities=8% Similarity=0.048 Sum_probs=64.3
Q ss_pred CceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc----cceeccccccCCCCC---Cccceeeeccc
Q 006905 469 RYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL----VGTYTNWCEAMSTYP---RTYDLIHADSV 541 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl----i~~~~~~~e~~~~yp---~t~Dlih~~~~ 541 (626)
.-.+|||+|||.|.++..|++++. .|+.+|.++.+++.+.++-- +.+++ .++..++ ..||.|-++--
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~~---~v~~vE~~~~~~~~~~~~~~~~~~v~ii~---~D~~~~~~~~~~~d~vi~n~P 86 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERAA---RVTAIEIDPRLAPRLREKFAAADNLTVIH---GDALKFDLPKLQPYKVVGNLP 86 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcCC---eEEEEECCHHHHHHHHHHhccCCCEEEEE---CchhcCCccccCCCEEEECCC
Confidence 345899999999999999999853 78999999889998877631 33444 4444443 46899887655
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
|.... ..+..++.+. -+.++|.+++...
T Consensus 87 y~~~~--~~i~~~l~~~--~~~~~~~l~~q~e 114 (169)
T smart00650 87 YNIST--PILFKLLEEP--PAFRDAVLMVQKE 114 (169)
T ss_pred cccHH--HHHHHHHhcC--CCcceEEEEEEHH
Confidence 54321 2333444332 2569999988743
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0012 Score=57.83 Aligned_cols=95 Identities=20% Similarity=0.272 Sum_probs=61.3
Q ss_pred EEeccCchhh--HhhhhhCCCeEEEEeccCccCcccHHHHHHhcc------cceec-cccccCCCCCC--ccceeeeccc
Q 006905 473 ILDMNAHLGG--FAAALIDFPVWVMNVVPAEAKINTLGVIYERGL------VGTYT-NWCEAMSTYPR--TYDLIHADSV 541 (626)
Q Consensus 473 vlD~g~g~G~--faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl------i~~~~-~~~e~~~~yp~--t~Dlih~~~~ 541 (626)
++|+|||.|. +.+.+...+. .++.+|.+..++.....+.. +.... +.......++. +||++ +...
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGA---YVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCc---eEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 9999999998 4555555432 34447777777777444431 12222 22221233333 89999 6554
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFRDDV 574 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~ 574 (626)
..+... ...++.++.|+|+|+|.+++.+..
T Consensus 128 ~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 128 VLHLLP---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred ehhcCC---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 444443 688999999999999999998654
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00095 Score=73.06 Aligned_cols=95 Identities=14% Similarity=0.141 Sum_probs=65.6
Q ss_pred CEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEcccccCCCCCCCeeEEEecccccc
Q 006905 213 RTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAERLPYPSRAFDMAHCSRCLIP 287 (626)
Q Consensus 213 ~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h 287 (626)
.+|||++||+|.++..++.. .|+++|+++..+..+. +.++.+++. ..+...|+..+....+.||+|+...
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~-~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP---- 133 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIK-KNLELNGLENEKVFNKDANALLHEERKFDVVDIDP---- 133 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHH-HHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC----
Confidence 47999999999999998764 4889998775443322 333444554 3355566544321145799999854
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 288 WNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 288 ~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+ ..+..++....+.+++||++.++.
T Consensus 134 ~-Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 134 F-GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred C-CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 2 223678888788899999999984
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00033 Score=71.18 Aligned_cols=96 Identities=7% Similarity=0.034 Sum_probs=75.4
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc-cc--------------ceeccccccCCCCC-----
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG-LV--------------GTYTNWCEAMSTYP----- 530 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg-li--------------~~~~~~~e~~~~yp----- 530 (626)
..||+.|||-|-=+.+|+++|. .|+++|.++..++.++++. +. +.+.-+|.+|-.++
T Consensus 45 ~rvLvPgCGkg~D~~~LA~~G~---~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~ 121 (226)
T PRK13256 45 SVCLIPMCGCSIDMLFFLSKGV---KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANN 121 (226)
T ss_pred CeEEEeCCCChHHHHHHHhCCC---cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccc
Confidence 5799999999999999999998 7999999988888766631 10 11223466676664
Q ss_pred -CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEE
Q 006905 531 -RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIF 570 (626)
Q Consensus 531 -~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~ 570 (626)
+.||+|.=...|..+.. -.......-|.++|||||.+++
T Consensus 122 ~~~fD~VyDra~~~Alpp-~~R~~Y~~~l~~lL~pgg~lll 161 (226)
T PRK13256 122 LPVFDIWYDRGAYIALPN-DLRTNYAKMMLEVCSNNTQILL 161 (226)
T ss_pred cCCcCeeeeehhHhcCCH-HHHHHHHHHHHHHhCCCcEEEE
Confidence 47999998888888764 2557899999999999999877
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0014 Score=74.64 Aligned_cols=123 Identities=14% Similarity=0.169 Sum_probs=78.3
Q ss_pred CceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc-c------------cceec-cccccCCCCCCccc
Q 006905 469 RYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG-L------------VGTYT-NWCEAMSTYPRTYD 534 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg-l------------i~~~~-~~~e~~~~yp~t~D 534 (626)
+-++|||+|||.|+.+..+++++- +..|+-+|.++++++.+.+.- + +.+++ |--+-+...+++||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~-v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPD-VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCC-cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 467899999999999999887742 247788888888999988731 1 11222 11111123468999
Q ss_pred eeeeccccccCCC--CCCHHHHHHHhhhhccCCcEEEEEc-----ChHHHHHHHHHHHhCCCeeE
Q 006905 535 LIHADSVFSLYKD--RCETEDILLEMDRILRPEGGVIFRD-----DVDELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 535 lih~~~~f~~~~~--~c~~~~~l~E~dRiLRPgG~~i~~d-----~~~~~~~~~~~~~~l~w~~~ 592 (626)
+|-++.-...... +=--+.++.++.|.|||||.+++.. ..+....+.+.+++....+.
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v~ 440 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLATT 440 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEEE
Confidence 9998733221110 0001357889999999999999853 23445566666666545443
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00054 Score=73.50 Aligned_cols=129 Identities=16% Similarity=0.264 Sum_probs=78.1
Q ss_pred HHHHHHHH--HHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc-----------
Q 006905 448 ELWKKRLS--YYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG----------- 514 (626)
Q Consensus 448 ~~w~~~v~--~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg----------- 514 (626)
..|.+.+- .|.+. +.....-.+|||||||=||=-.-....++ -.++++|.+...++-+.+|=
T Consensus 42 NNwvKs~LI~~~~~~---~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i--~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~ 116 (331)
T PF03291_consen 42 NNWVKSVLIQKYAKK---VKQNRPGLTVLDLCCGKGGDLQKWQKAKI--KHYVGIDISEESIEEARERYKQLKKRNNSKQ 116 (331)
T ss_dssp HHHHHHHHHHHHCHC---CCCTTTT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HT
T ss_pred hHHHHHHHHHHHHHh---hhccCCCCeEEEecCCCchhHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhcccccccc
Confidence 55777653 33332 22213578899999999984444444444 36899999988999888887
Q ss_pred ----ccceeccccccCCC-----CC---CccceeeeccccccC-CCCCCHHHHHHHhhhhccCCcEEEEEc--ChHHHHH
Q 006905 515 ----LVGTYTNWCEAMST-----YP---RTYDLIHADSVFSLY-KDRCETEDILLEMDRILRPEGGVIFRD--DVDELVK 579 (626)
Q Consensus 515 ----li~~~~~~~e~~~~-----yp---~t~Dlih~~~~f~~~-~~~c~~~~~l~E~dRiLRPgG~~i~~d--~~~~~~~ 579 (626)
.....+ .+..|.. ++ +.||+|=|.-.|++. .+.-....+|.-+-.-|||||+||.+- ...++.+
T Consensus 117 ~~~~f~a~f~-~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~ 195 (331)
T PF03291_consen 117 YRFDFIAEFI-AADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKR 195 (331)
T ss_dssp SEECCEEEEE-ESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCC
T ss_pred ccccchhhee-ccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHH
Confidence 111111 1122222 33 599999998877753 333345569999999999999999983 3334444
Q ss_pred HHH
Q 006905 580 VKR 582 (626)
Q Consensus 580 ~~~ 582 (626)
+++
T Consensus 196 l~~ 198 (331)
T PF03291_consen 196 LRE 198 (331)
T ss_dssp HHC
T ss_pred HHh
Confidence 444
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0017 Score=66.29 Aligned_cols=130 Identities=11% Similarity=0.113 Sum_probs=77.6
Q ss_pred ceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHh----cc---cceec-cccccCCC----C-CCccce
Q 006905 470 YRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYER----GL---VGTYT-NWCEAMST----Y-PRTYDL 535 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~-~~~e~~~~----y-p~t~Dl 535 (626)
-++|||+|||+|.-+.+|+.. +- .-.|+.+|.++..+.++.+. |+ |.+++ +..+.+.. . ..+||+
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~-~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~ 147 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPE-DGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDF 147 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCE
Confidence 678999999999755444321 10 11578888887777766543 43 33333 22232222 2 268999
Q ss_pred eeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEc---------Ch--------HHHHHHHHHHHhC----CCeeEEe
Q 006905 536 IHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRD---------DV--------DELVKVKRIIDAL----KWQSQIV 594 (626)
Q Consensus 536 ih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d---------~~--------~~~~~~~~~~~~l----~w~~~~~ 594 (626)
|..+.- +-....++.++-|.|||||.+++-+ .. .....|+++.+.+ +|.+.+.
T Consensus 148 VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~~~~l 221 (234)
T PLN02781 148 AFVDAD------KPNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVEISQI 221 (234)
T ss_pred EEECCC------HHHHHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeEEEEE
Confidence 988321 1245678888899999999998732 10 1234454544433 5555555
Q ss_pred ecCCCCCCcceEEEEEec
Q 006905 595 DHEDGPLEREKLLFAVKL 612 (626)
Q Consensus 595 ~~e~~~~~~e~~l~~~K~ 612 (626)
-. .+.+++++|.
T Consensus 222 p~------gdG~~i~~k~ 233 (234)
T PLN02781 222 SI------GDGVTLCRRL 233 (234)
T ss_pred Ee------CCccEEEEEe
Confidence 32 3667888874
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0029 Score=59.17 Aligned_cols=95 Identities=12% Similarity=0.063 Sum_probs=72.9
Q ss_pred CceeEEeccCchhh-HhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceeccccccCCCCCCccceeeeccccccCCC
Q 006905 469 RYRNILDMNAHLGG-FAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYPRTYDLIHADSVFSLYKD 547 (626)
Q Consensus 469 ~~r~vlD~g~g~G~-faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~yp~t~Dlih~~~~f~~~~~ 547 (626)
+-+.|||+|||+|. +|..|++.+. +|+.+|.+++.++-+.++++-.+..|+-+.=...=+.+|+|-+
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~---~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liys--------- 83 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGF---DVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYS--------- 83 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCC---EEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEE---------
Confidence 34679999999996 9999999987 8999999999999999998755555433211111178899998
Q ss_pred CCCHHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHhCCCeeEEeecC
Q 006905 548 RCETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQIVDHE 597 (626)
Q Consensus 548 ~c~~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~l~w~~~~~~~e 597 (626)
+|-+.+++..+.++++++.=++.+.-..
T Consensus 84 ----------------------irpp~el~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 84 ----------------------IRPPRDLQPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred ----------------------eCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 4556778888999999998888876544
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0035 Score=61.15 Aligned_cols=101 Identities=18% Similarity=0.207 Sum_probs=69.5
Q ss_pred CCEEEEeCCCCchHHHHHhhC-C----cEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEeccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-N----IITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLI 286 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-~----V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~ 286 (626)
...+||||||+|.....|++. + ..++|+.|.. .++..+.|+.++..+..+..|...- ...++.|+++.+....
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A-~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEA-LEATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHH-HHHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcC
Confidence 568999999999999988886 2 5678887743 3445566766776655555553221 1238899999876553
Q ss_pred cccccH--------------------HHHHHHHHhcccCCeEEEEEeC
Q 006905 287 PWNQFG--------------------GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 287 h~~~~~--------------------~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+-.+.+ ++++..+..+|.|.|.|++..-
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~ 169 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL 169 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence 322111 2677888899999999999754
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00095 Score=68.13 Aligned_cols=97 Identities=18% Similarity=0.159 Sum_probs=65.1
Q ss_pred eeEEeccCchhhHhhhhhCCC--eEEEEeccCccCcccHHHHHHhcccceeccccccCCCCC--CccceeeeccccccCC
Q 006905 471 RNILDMNAHLGGFAAALIDFP--VWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYP--RTYDLIHADSVFSLYK 546 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~--v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~yp--~t~Dlih~~~~f~~~~ 546 (626)
.+|||+|||+|.++.+++++- .-..+|+.+|..++++..+.+.-. . .+-.+..+..++ .+||+|-++==|....
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-~-~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-E-ATWINADALTTEFDTLFDMAISNPPFGKIK 128 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-C-CEEEEcchhcccccCCccEEEECCCCCCcc
Confidence 479999999999999887530 012389999999889988885531 1 122234555443 6899999987766322
Q ss_pred -----CC---CCHH-HHHHHhhhhccCCcEEEE
Q 006905 547 -----DR---CETE-DILLEMDRILRPEGGVIF 570 (626)
Q Consensus 547 -----~~---c~~~-~~l~E~dRiLRPgG~~i~ 570 (626)
.+ ..+. .++...-|+||||+. |+
T Consensus 129 ~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 129 TSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred ccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 11 1333 377777888888886 55
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0026 Score=62.35 Aligned_cols=100 Identities=21% Similarity=0.200 Sum_probs=64.2
Q ss_pred CCEEEEeCCCCchHHHHHhh--CC-----------cEEEeCCccchHHHHHHHHHHcCCC--eEEEEcccccCCCCCCCe
Q 006905 212 IRTAIDTGCGVASWGAYLLS--RN-----------IITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAERLPYPSRAF 276 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~--~~-----------V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~Lpf~d~sF 276 (626)
+..+||--||+|++....+. .+ +.+.|+++..+..+..+ +...++. +.+...|+..+++.++++
T Consensus 29 ~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N-~~~ag~~~~i~~~~~D~~~l~~~~~~~ 107 (179)
T PF01170_consen 29 GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGAREN-LKAAGVEDYIDFIQWDARELPLPDGSV 107 (179)
T ss_dssp TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHH-HHHTT-CGGEEEEE--GGGGGGTTSBS
T ss_pred CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHH-HHhcccCCceEEEecchhhcccccCCC
Confidence 45899999999988865433 23 45999988766544443 3344543 667778899999888899
Q ss_pred eEEEecccccccccc---H----HHHHHHHHhcccCCeEEEEE
Q 006905 277 DMAHCSRCLIPWNQF---G----GIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 277 DlV~~~~~l~h~~~~---~----~~~L~Ei~RvLKPGG~lvis 312 (626)
|.|+++.-.-.-... . ..++.++.|+|++...+++.
T Consensus 108 d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 108 DAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp CEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred CEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 999998744211111 1 36789999999995555555
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0025 Score=70.49 Aligned_cols=99 Identities=24% Similarity=0.302 Sum_probs=76.8
Q ss_pred EEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEeccccccccc
Q 006905 214 TAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQ 290 (626)
Q Consensus 214 ~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~ 290 (626)
++|-+|||+-.+...+.+- .++.+|+++..+...++..+.++ ....+...|...+.|++++||+|+.-..+.+...
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~-~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~ 129 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKER-PEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFE 129 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCC-cceEEEEecchhccCCCcceeEEEecCccccccC
Confidence 8999999999999888885 67888888776665554444222 2356677788999999999999999887766654
Q ss_pred cH---------HHHHHHHHhcccCCeEEEEEe
Q 006905 291 FG---------GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 291 ~~---------~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+. ...+.++.|+|+|||.++...
T Consensus 130 de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 130 DEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred CchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 43 246799999999999988754
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0024 Score=59.67 Aligned_cols=88 Identities=13% Similarity=0.071 Sum_probs=56.6
Q ss_pred CCEEEEeCCCCch-HHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCC-CCCeeEEEecccccc
Q 006905 212 IRTAIDTGCGVAS-WGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYP-SRAFDMAHCSRCLIP 287 (626)
Q Consensus 212 ~~~VLDIGCGtG~-~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~-d~sFDlV~~~~~l~h 287 (626)
+.++||||||.|. ++..|++. .|+++|+++ ..++.+++++.. ..+.|...-++. -..+|+|.+.+.-
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~-----~aV~~a~~~~~~--~v~dDlf~p~~~~y~~a~liysirpp-- 87 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESGFDVIVIDINE-----KAVEKAKKLGLN--AFVDDLFNPNLEIYKNAKLIYSIRPP-- 87 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHhCCe--EEECcCCCCCHHHHhcCCEEEEeCCC--
Confidence 4689999999995 88899887 466666644 567777777753 444454443322 3569999997743
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEE
Q 006905 288 WNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 288 ~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
.+....+.++.+.+ |.-++|.
T Consensus 88 --~el~~~~~~la~~~--~~~~~i~ 108 (134)
T PRK04148 88 --RDLQPFILELAKKI--NVPLIIK 108 (134)
T ss_pred --HHHHHHHHHHHHHc--CCCEEEE
Confidence 22345555555544 4456654
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.005 Score=60.75 Aligned_cols=92 Identities=17% Similarity=0.144 Sum_probs=59.6
Q ss_pred EEEEeCCCCchHHHH----HhhCCcEEEeCCccchHHHHHHHHHHcCCC-eEEEEcccccCCCCCCCeeEEEeccccccc
Q 006905 214 TAIDTGCGVASWGAY----LLSRNIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAERLPYPSRAFDMAHCSRCLIPW 288 (626)
Q Consensus 214 ~VLDIGCGtG~~a~~----La~~~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~ 288 (626)
+++|||+|.|.-+.- +.+..++-+|-...-.. .....+.+-+++ +.+....++. +.....||+|++..+-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~-FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~--- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVA-FLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVA--- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHH-HHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSS---
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHH-HHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhc---
Confidence 799999999944433 33346777777553221 222334455766 5555555666 4456789999996543
Q ss_pred cccHHHHHHHHHhcccCCeEEEEE
Q 006905 289 NQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 289 ~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
....++.-+.+.|++||.+++-
T Consensus 126 --~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 126 --PLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp --SHHHHHHHHGGGEEEEEEEEEE
T ss_pred --CHHHHHHHHHHhcCCCCEEEEE
Confidence 3467888899999999999886
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0022 Score=64.89 Aligned_cols=121 Identities=17% Similarity=0.219 Sum_probs=85.8
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHH-hcc------cce--------eccccccCCCCC----
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYE-RGL------VGT--------YTNWCEAMSTYP---- 530 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~-rgl------i~~--------~~~~~e~~~~yp---- 530 (626)
-..||+-|||.|--+.+|+++|. +|+++|.++..++.+++ +++ ++. +.-+|.+|-.++
T Consensus 38 ~~rvLvPgCG~g~D~~~La~~G~---~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~ 114 (218)
T PF05724_consen 38 GGRVLVPGCGKGYDMLWLAEQGH---DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDV 114 (218)
T ss_dssp SEEEEETTTTTSCHHHHHHHTTE---EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCH
T ss_pred CCeEEEeCCCChHHHHHHHHCCC---eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhc
Confidence 45799999999999999999996 89999999888887754 443 111 122466776665
Q ss_pred CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEE-E-cC--------h--HHHHHHHHHHHhCCCeeEEee
Q 006905 531 RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIF-R-DD--------V--DELVKVKRIIDALKWQSQIVD 595 (626)
Q Consensus 531 ~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~-~-d~--------~--~~~~~~~~~~~~l~w~~~~~~ 595 (626)
+.||+|.=...|..+.. ...+....-|.++|+|||.+++ + +- . -....|++++. -.|++....
T Consensus 115 g~fD~iyDr~~l~Alpp-~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l~ 189 (218)
T PF05724_consen 115 GKFDLIYDRTFLCALPP-EMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEELE 189 (218)
T ss_dssp HSEEEEEECSSTTTS-G-GGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEEEE
T ss_pred CCceEEEEecccccCCH-HHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEEEe
Confidence 46999998777876654 4668899999999999999333 2 10 1 12567777777 777877543
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0028 Score=68.91 Aligned_cols=96 Identities=16% Similarity=0.132 Sum_probs=62.2
Q ss_pred CEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEccccc-CC-CC--------------C
Q 006905 213 RTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAER-LP-YP--------------S 273 (626)
Q Consensus 213 ~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~-Lp-f~--------------d 273 (626)
.++||++||+|.++..|++. .|+++|+++..+..+. +.+..+++ .+.+...|+.. ++ +. .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~-~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQ-YNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHH-HHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 46999999999999988875 6899999886554433 33444555 35677667543 21 10 1
Q ss_pred CCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 006905 274 RAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPP 315 (626)
Q Consensus 274 ~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~pp 315 (626)
..||+|+..... ..-...++..+.+ |++.++++..|
T Consensus 287 ~~~D~v~lDPPR---~G~~~~~l~~l~~---~~~ivyvSC~p 322 (362)
T PRK05031 287 YNFSTIFVDPPR---AGLDDETLKLVQA---YERILYISCNP 322 (362)
T ss_pred CCCCEEEECCCC---CCCcHHHHHHHHc---cCCEEEEEeCH
Confidence 258999986643 2212445555543 78899998653
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0031 Score=68.38 Aligned_cols=95 Identities=14% Similarity=0.108 Sum_probs=61.1
Q ss_pred EEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccC-C-------C---C-----CC
Q 006905 214 TAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERL-P-------Y---P-----SR 274 (626)
Q Consensus 214 ~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~L-p-------f---~-----d~ 274 (626)
++||++||+|.++..|++. .|+++|+++.++..+. +.+..+++ .+.+...|+..+ + + . ..
T Consensus 200 ~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~-~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQ-YNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSY 278 (353)
T ss_pred cEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHH-HHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccccC
Confidence 6999999999999988875 7899999886655433 33444555 356666665432 1 1 0 12
Q ss_pred CeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 006905 275 AFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPP 315 (626)
Q Consensus 275 sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~pp 315 (626)
.||+|+....- ..-...++..+. +|++.++++..|
T Consensus 279 ~~d~v~lDPPR---~G~~~~~l~~l~---~~~~ivYvsC~p 313 (353)
T TIGR02143 279 NCSTIFVDPPR---AGLDPDTCKLVQ---AYERILYISCNP 313 (353)
T ss_pred CCCEEEECCCC---CCCcHHHHHHHH---cCCcEEEEEcCH
Confidence 38999886632 111144555544 489999998653
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0027 Score=65.45 Aligned_cols=96 Identities=13% Similarity=0.029 Sum_probs=63.4
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEccc-ccCCC------CCCCee
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAA-ERLPY------PSRAFD 277 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~-~~Lpf------~d~sFD 277 (626)
.++||+||+++|.-+..|+.. .+++++..+.... .+.+.-.+.|+ .+.+..+++ +.|+- ..++||
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~-~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYE-LGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHH-HHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 458999999999888777753 5888888663332 22223334454 355555653 22331 136899
Q ss_pred EEEeccccccccccHHHHHHHHHhcccCCeEEEEE
Q 006905 278 MAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 278 lV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
+|+.-. .......++..+.+.|+|||.+++.
T Consensus 159 ~iFiDa----dK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 159 FIFVDA----DKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred EEEecC----CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 998744 2333367888889999999998885
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0028 Score=63.33 Aligned_cols=124 Identities=15% Similarity=0.107 Sum_probs=73.4
Q ss_pred ccCCceecCCCCCCCCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhh--C--CcEEEeCCccchHHHHHHH
Q 006905 176 YEGDRFRFPGGGTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLS--R--NIITMSFAPRDTHEAQVQF 251 (626)
Q Consensus 176 ~~ge~~~Fp~ggt~F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~--~--~V~avdis~~dls~a~i~~ 251 (626)
..|-.|.+.-...+|..+-..--.++.+.+ .+ +.+|||+-||.|.|+..+++ + .|.++|+.|.. -+.+.+.
T Consensus 70 E~G~~f~~D~~kvyfs~rl~~Er~Ri~~~v--~~--~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a-~~~L~~N 144 (200)
T PF02475_consen 70 ENGIRFKVDLSKVYFSPRLSTERRRIANLV--KP--GEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDA-VEYLKEN 144 (200)
T ss_dssp ETTEEEEEETTTS---GGGHHHHHHHHTC----T--T-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHH-HHHHHHH
T ss_pred eCCEEEEEccceEEEccccHHHHHHHHhcC--Cc--ceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHH-HHHHHHH
Confidence 344445554445666665544444555443 23 45999999999999999888 3 58999998843 3445555
Q ss_pred HHHcCCC--eEEEEcccccCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEE
Q 006905 252 ALERGVP--ALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWI 310 (626)
Q Consensus 252 A~erg~~--~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lv 310 (626)
++.+++. +....+|...+.- .+.||-|+++.. ..-..+|..+.+++|+||.+-
T Consensus 145 i~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~lp-----~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 145 IRLNKVENRIEVINGDAREFLP-EGKFDRVIMNLP-----ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp HHHTT-TTTEEEEES-GGG----TT-EEEEEE--T-----SSGGGGHHHHHHHEEEEEEEE
T ss_pred HHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECCh-----HHHHHHHHHHHHHhcCCcEEE
Confidence 5556654 4556677766654 788999988652 222468889999999999864
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.002 Score=68.57 Aligned_cols=103 Identities=21% Similarity=0.205 Sum_probs=65.8
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh------cc----cceec-cccccCCCCC-Cccce
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER------GL----VGTYT-NWCEAMSTYP-RTYDL 535 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r------gl----i~~~~-~~~e~~~~yp-~t~Dl 535 (626)
...++|||+|||.|+.++++++.+ -+.+|+-+|..+.+++++.+. ++ +.+++ |--+-+...| +.||+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 347889999999999999999874 235666667666788877664 11 12222 1000122344 78999
Q ss_pred eeeccccccCCCC-CCHHHHHHHhhhhccCCcEEEEE
Q 006905 536 IHADSVFSLYKDR-CETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 536 ih~~~~f~~~~~~-c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
|-++......... ---..++..+.|.|+|||.+++.
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 9885432221110 01146788999999999999873
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.005 Score=61.52 Aligned_cols=109 Identities=14% Similarity=0.144 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEccccc
Q 006905 194 ADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAER 268 (626)
Q Consensus 194 a~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~ 268 (626)
+..-+.+|.+-..+-. ++.+|+|||+..|+|+..++++ .|+++|+.|.+... + +.+.++|...
T Consensus 29 Aa~KL~el~~k~~i~~-~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~---------~--V~~iq~d~~~ 96 (205)
T COG0293 29 AAYKLLELNEKFKLFK-PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIP---------G--VIFLQGDITD 96 (205)
T ss_pred HHHHHHHHHHhcCeec-CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCC---------C--ceEEeeeccC
Confidence 3334445554443222 2458999999999999998886 38999998865532 2 4555555433
Q ss_pred CC--------CCCCCeeEEEecccc--------ccccccH--HHHHHHHHhcccCCeEEEEEeC
Q 006905 269 LP--------YPSRAFDMAHCSRCL--------IPWNQFG--GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 269 Lp--------f~d~sFDlV~~~~~l--------~h~~~~~--~~~L~Ei~RvLKPGG~lvis~p 314 (626)
-+ +....+|+|+|-.+- .|..... ..++.-...+|+|||.|++...
T Consensus 97 ~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 97 EDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred ccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 22 234457999974332 1221111 3456667789999999999753
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0029 Score=70.29 Aligned_cols=113 Identities=17% Similarity=0.192 Sum_probs=74.6
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceec-cccccCCCCC---Cccceeeec
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYT-NWCEAMSTYP---RTYDLIHAD 539 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~-~~~e~~~~yp---~t~Dlih~~ 539 (626)
-.+|||+|||+|.++..|++..- .|+.+|.++.+++.+.+. |+ +.+++ |..+.+..++ .+||+|..+
T Consensus 293 ~~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 35799999999999999998743 689999998999877663 33 23333 3332223332 579988762
Q ss_pred cccccCCCCCC-HHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHhCCCeeE
Q 006905 540 SVFSLYKDRCE-TEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 540 ~~f~~~~~~c~-~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~l~w~~~ 592 (626)
-- |-. ...++.++.+ |+|+|.++++-+...+.+-...+..-.|++.
T Consensus 370 PP------r~G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~~~gy~~~ 416 (431)
T TIGR00479 370 PP------RKGCAAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLCKEGYGIT 416 (431)
T ss_pred cC------CCCCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHHHCCeeEE
Confidence 21 212 3567777666 8999999998666655444444445557654
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0067 Score=67.68 Aligned_cols=129 Identities=19% Similarity=0.258 Sum_probs=81.2
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceec-cccccCCC--CC-Cccceeeecc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYT-NWCEAMST--YP-RTYDLIHADS 540 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~-~~~e~~~~--yp-~t~Dlih~~~ 540 (626)
..|||+|||+|.++..|++... .|+.+|.++.++..+.+. |+ +..++ |+-+.+.. ++ .+||+|.++
T Consensus 299 ~~VLDlgcGtG~~sl~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d- 374 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLARQAA---EVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD- 374 (443)
T ss_pred CEEEEEeccCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC-
Confidence 5799999999999999998853 789999999999987764 33 22322 33333322 33 679998762
Q ss_pred ccccCCCCCCHHHHHHHhhhhccCCcEEEEE-cChHHHHHHHHHHHhCCCeeE---EeecCCCCCCcceEEEEE
Q 006905 541 VFSLYKDRCETEDILLEMDRILRPEGGVIFR-DDVDELVKVKRIIDALKWQSQ---IVDHEDGPLEREKLLFAV 610 (626)
Q Consensus 541 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~-d~~~~~~~~~~~~~~l~w~~~---~~~~e~~~~~~e~~l~~~ 610 (626)
. .|..+..++..+.+ |+|++.++++ ++...-..+..+.+ -.|++. .+|.=.....=|-|.+.+
T Consensus 375 ----P-Pr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~~-~gY~l~~i~~~DmFP~T~HvE~v~lL~ 441 (443)
T PRK13168 375 ----P-PRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLVE-AGYRLKRAGMLDMFPHTGHVESMALFE 441 (443)
T ss_pred ----c-CCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHhh-CCcEEEEEEEeccCCCCCcEEEEEEEE
Confidence 1 23344566666666 6999999998 44444555555543 246654 334333222335555444
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0066 Score=63.77 Aligned_cols=100 Identities=16% Similarity=0.155 Sum_probs=66.6
Q ss_pred CCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcC---------CCeEEEEccccc-CCCCC
Q 006905 208 NDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERG---------VPALIGVLAAER-LPYPS 273 (626)
Q Consensus 208 ~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg---------~~~~~~v~d~~~-Lpf~d 273 (626)
..+..++||-||-|.|..+..+++. .++.+++++ ..++.+++.- ..+.+...|... +.-..
T Consensus 73 ah~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~-----~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~ 147 (282)
T COG0421 73 AHPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDP-----AVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCE 147 (282)
T ss_pred hCCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCH-----HHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCC
Confidence 3344579999999999999999987 677888755 4555555431 123444445322 23223
Q ss_pred CCeeEEEeccccccccc----cHHHHHHHHHhcccCCeEEEEEe
Q 006905 274 RAFDMAHCSRCLIPWNQ----FGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 274 ~sFDlV~~~~~l~h~~~----~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
.+||+|++--.= +... ....+++.+.|.|+++|.++...
T Consensus 148 ~~fDvIi~D~td-p~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 148 EKFDVIIVDSTD-PVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred CcCCEEEEcCCC-CCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 489999974321 2101 01689999999999999999973
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0026 Score=69.97 Aligned_cols=123 Identities=17% Similarity=0.145 Sum_probs=77.3
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc----cceec-cccccCCCC---CCccceeee
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL----VGTYT-NWCEAMSTY---PRTYDLIHA 538 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl----i~~~~-~~~e~~~~y---p~t~Dlih~ 538 (626)
.+|||+|||+|+|+.+.+..+. -.|+.+|.++.+++.+.+. |+ +.+++ |..+.+..+ .++||+|-+
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga--~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 5799999999999876555543 2688889998898876543 33 11222 222211122 258999998
Q ss_pred cccc-ccCC-----CCCCHHHHHHHhhhhccCCcEEEEEcC------hHHHHHHHHHHHhCCCeeEEee
Q 006905 539 DSVF-SLYK-----DRCETEDILLEMDRILRPEGGVIFRDD------VDELVKVKRIIDALKWQSQIVD 595 (626)
Q Consensus 539 ~~~f-~~~~-----~~c~~~~~l~E~dRiLRPgG~~i~~d~------~~~~~~~~~~~~~l~w~~~~~~ 595 (626)
+-=+ .... ...++.+++.-.-++|+|||.+++... .+..+.+.+-+..-..+.++..
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l~ 368 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIE 368 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 6332 1110 012455666677899999999998422 2356666666776666766553
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0074 Score=67.75 Aligned_cols=104 Identities=14% Similarity=0.170 Sum_probs=67.7
Q ss_pred CCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCe-EEEEcccccCC-CCCCCeeEEE--
Q 006905 210 GSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVPA-LIGVLAAERLP-YPSRAFDMAH-- 280 (626)
Q Consensus 210 ~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~~-~~~v~d~~~Lp-f~d~sFDlV~-- 280 (626)
.++.+|||+++|.|.=+.++++. .+++.|+++.-+. ...+...+.|+.. .+...|...++ ...+.||.|+
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~-~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVK-VLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHH-HHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 34569999999999777777664 4788888774333 3334444557654 44445555543 2245799999
Q ss_pred --ecccc--c-------cccc--------cHHHHHHHHHhcccCCeEEEEEeC
Q 006905 281 --CSRCL--I-------PWNQ--------FGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 281 --~~~~l--~-------h~~~--------~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
|+..- . .|.. -+..+|..+.+.|||||+++.++-
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC 243 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC 243 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 54321 0 1211 113688999999999999999864
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0016 Score=70.71 Aligned_cols=120 Identities=19% Similarity=0.251 Sum_probs=77.8
Q ss_pred chhhhHHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceeccc
Q 006905 443 FQQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNW 522 (626)
Q Consensus 443 f~~d~~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~ 522 (626)
|.++-..|.+ .++|..+...+.+ +. -++|+|||+|+...+.+.-.. -++..++.+...+..+-+.-.-..+|+-
T Consensus 88 ~~~~~~~~~~-~~~~~~l~~~~~~-~~--~~~~~~~g~~~~~~~i~~f~~--~~~~Gl~~n~~e~~~~~~~~~~~~l~~k 161 (364)
T KOG1269|consen 88 GNSNEMFWIR-HEGIVALRESCFP-GS--KVLDVGTGVGGPSRYIAVFKK--AGVVGLDNNAYEAFRANELAKKAYLDNK 161 (364)
T ss_pred hhHHHHHHHh-hcchHHHhhcCcc-cc--cccccCcCcCchhHHHHHhcc--CCccCCCcCHHHHHHHHHHHHHHHhhhh
Confidence 4444455654 4556655555666 44 688999999999998876532 2567777764444443333321112211
Q ss_pred ccc----C--CCCC-CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 523 CEA----M--STYP-RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 523 ~e~----~--~~yp-~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
|.. | ..++ ++||.+-+..+-.|.+ +...++.|+.|||+|||++|.-
T Consensus 162 ~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~---~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 162 CNFVVADFGKMPFEDNTFDGVRFLEVVCHAP---DLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred cceehhhhhcCCCCccccCcEEEEeecccCC---cHHHHHHHHhcccCCCceEEeH
Confidence 111 1 2344 9999999977777777 4588999999999999999984
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0041 Score=61.27 Aligned_cols=133 Identities=14% Similarity=0.122 Sum_probs=73.4
Q ss_pred cCCceecCCCCCCCCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHH
Q 006905 177 EGDRFRFPGGGTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFAL 253 (626)
Q Consensus 177 ~ge~~~Fp~ggt~F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~ 253 (626)
.|..+..|.+...= ...+..-+.+-.++....-.+.++||+-||+|.++...+.+ .|+.+|.++.... ...+...
T Consensus 9 kgr~l~~p~~~~~R-PT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~-~i~~N~~ 86 (183)
T PF03602_consen 9 KGRKLKTPKGDNTR-PTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIK-IIKKNLE 86 (183)
T ss_dssp TT-EEE-TT--TS--SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHH-HHHHHHH
T ss_pred CCCEecCCCCCCcC-CCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHH-HHHHHHH
Confidence 45556666543322 23334444555555422123568999999999999999988 4777777663332 2222333
Q ss_pred HcCCC--eEEEEccc-ccCC---CCCCCeeEEEeccccccccccH--HHHHHHHH--hcccCCeEEEEEeC
Q 006905 254 ERGVP--ALIGVLAA-ERLP---YPSRAFDMAHCSRCLIPWNQFG--GIYLIEVD--RVLRPGGYWILSGP 314 (626)
Q Consensus 254 erg~~--~~~~v~d~-~~Lp---f~d~sFDlV~~~~~l~h~~~~~--~~~L~Ei~--RvLKPGG~lvis~p 314 (626)
.-+.. ..+...|+ ..++ .....||+|++-.. +.... ..++..+. .+|+++|.+++...
T Consensus 87 ~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPP---Y~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 87 KLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPP---YAKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp HHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--S---TTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred HhCCCcceeeeccCHHHHHHhhcccCCCceEEEECCC---cccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 33432 45555552 2222 24678999999774 33332 55666666 79999999999854
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0026 Score=64.72 Aligned_cols=113 Identities=19% Similarity=0.246 Sum_probs=75.8
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHH----HHHHhcc--cceecccc-ccCCCCC--Cccceeeeccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLG----VIYERGL--VGTYTNWC-EAMSTYP--RTYDLIHADSV 541 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~----~~~~rgl--i~~~~~~~-e~~~~yp--~t~Dlih~~~~ 541 (626)
..+|++|||.|.|-..||+++= -.|+++++...+-+. .+-+.|+ +.++..=+ +-+..++ ++.|-|+. .
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP-~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i--~ 126 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNP-EKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYI--N 126 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCC-CCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEE--E
Confidence 4799999999999999998732 127777777655444 5556666 44443222 2233344 49998886 5
Q ss_pred cc-------cCCCCCCHHHHHHHhhhhccCCcEEEE-EcChHHHHH-HHHHHHh
Q 006905 542 FS-------LYKDRCETEDILLEMDRILRPEGGVIF-RDDVDELVK-VKRIIDA 586 (626)
Q Consensus 542 f~-------~~~~~c~~~~~l~E~dRiLRPgG~~i~-~d~~~~~~~-~~~~~~~ 586 (626)
|+ |.+.|=--+..|.++.|+|+|||.+.+ ||..+..+. ++.....
T Consensus 127 FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~ 180 (227)
T COG0220 127 FPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLEH 180 (227)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHhc
Confidence 66 334443445799999999999999999 566665555 5555444
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0036 Score=66.19 Aligned_cols=117 Identities=18% Similarity=0.228 Sum_probs=68.0
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhh-----------CCcEEEeCCccchHHHHHHHHHHcCCC---eE
Q 006905 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLS-----------RNIITMSFAPRDTHEAQVQFALERGVP---AL 260 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~-----------~~V~avdis~~dls~a~i~~A~erg~~---~~ 260 (626)
....+.+.+++... .+.+|||-+||+|.|...+.+ ..+.+.|+++....-+..+... ++.. ..
T Consensus 32 ~~i~~l~~~~~~~~--~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l-~~~~~~~~~ 108 (311)
T PF02384_consen 32 REIVDLMVKLLNPK--KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL-HGIDNSNIN 108 (311)
T ss_dssp HHHHHHHHHHHTT---TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH-TTHHCBGCE
T ss_pred HHHHHHHHhhhhcc--ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh-hcccccccc
Confidence 44556667776433 345899999999998877655 2577888866444333333332 2322 23
Q ss_pred EEEcccccCC-CC-CCCeeEEEeccccccc--cc------------------cHHHHHHHHHhcccCCeEEEEEeC
Q 006905 261 IGVLAAERLP-YP-SRAFDMAHCSRCLIPW--NQ------------------FGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 261 ~~v~d~~~Lp-f~-d~sFDlV~~~~~l~h~--~~------------------~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+...|....+ +. ...||+|+++..+... .. ....++..+.+.|++||.+++..|
T Consensus 109 i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 109 IIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp EEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 4555543333 22 4789999997655322 10 012578889999999999988865
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0056 Score=60.39 Aligned_cols=135 Identities=20% Similarity=0.291 Sum_probs=83.0
Q ss_pred hhhHHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhh--hhhCCCeEEEEeccCccC---cccHH-HHHHhcc--c
Q 006905 445 QNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAA--ALIDFPVWVMNVVPAEAK---INTLG-VIYERGL--V 516 (626)
Q Consensus 445 ~d~~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa--~l~~~~v~~mnv~~~~~~---~~~l~-~~~~rgl--i 516 (626)
+..+.|.+|+-.-...++.+.. ... +++|+|+|-|-=|- +++.... +|+-+|.. .+.|+ ++.+=|| +
T Consensus 26 ~~~~~~~~Hi~DSL~~~~~~~~-~~~-~~lDiGSGaGfPGipLaI~~p~~---~~~LvEs~~KK~~FL~~~~~~L~L~nv 100 (184)
T PF02527_consen 26 DPEEIWERHILDSLALLPFLPD-FGK-KVLDIGSGAGFPGIPLAIARPDL---QVTLVESVGKKVAFLKEVVRELGLSNV 100 (184)
T ss_dssp SHHHHHHHHHHHHHGGGGCS-C-CCS-EEEEETSTTTTTHHHHHHH-TTS---EEEEEESSHHHHHHHHHHHHHHT-SSE
T ss_pred CHHHHHHHHHHHHHHhhhhhcc-CCc-eEEecCCCCCChhHHHHHhCCCC---cEEEEeCCchHHHHHHHHHHHhCCCCE
Confidence 4458899998876666665555 222 69999999773332 3333333 23333433 22333 4445565 3
Q ss_pred ceeccccccCCCCCCccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh---HHHHHHHHHHHhCCCeeE
Q 006905 517 GTYTNWCEAMSTYPRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV---DELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 517 ~~~~~~~e~~~~yp~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~---~~~~~~~~~~~~l~w~~~ 592 (626)
.++|.-.|. ..++..||+|-| .+-+.+..++.-+.+.|+|||.+++--.. +.+...+...+.+.++..
T Consensus 101 ~v~~~R~E~-~~~~~~fd~v~a-------RAv~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~ 171 (184)
T PF02527_consen 101 EVINGRAEE-PEYRESFDVVTA-------RAVAPLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVL 171 (184)
T ss_dssp EEEES-HHH-TTTTT-EEEEEE-------ESSSSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEE
T ss_pred EEEEeeecc-cccCCCccEEEe-------ehhcCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEe
Confidence 455554444 347799999998 34467777888889999999999997544 455566666666666654
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.00062 Score=68.43 Aligned_cols=89 Identities=21% Similarity=0.294 Sum_probs=53.4
Q ss_pred ceeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHHHh----cc--cceeccccccCCCCC--Cccceeeec
Q 006905 470 YRNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIYER----GL--VGTYTNWCEAMSTYP--RTYDLIHAD 539 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~~~~e~~~~yp--~t~Dlih~~ 539 (626)
--+|||+|||+|-++|.|+.. ++ -.|+.++..+...+.+.++ |+ +.+.+. .....+| ..||.||+.
T Consensus 73 g~~VLeIGtGsGY~aAlla~lvg~~--g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~g--dg~~g~~~~apfD~I~v~ 148 (209)
T PF01135_consen 73 GDRVLEIGTGSGYQAALLAHLVGPV--GRVVSVERDPELAERARRNLARLGIDNVEVVVG--DGSEGWPEEAPFDRIIVT 148 (209)
T ss_dssp T-EEEEES-TTSHHHHHHHHHHSTT--EEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES---GGGTTGGG-SEEEEEES
T ss_pred CCEEEEecCCCcHHHHHHHHhcCcc--ceEEEECccHHHHHHHHHHHHHhccCceeEEEc--chhhccccCCCcCEEEEe
Confidence 457999999999999888753 12 1356777765666655444 32 233442 2234455 679999994
Q ss_pred cccccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 540 SVFSLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 540 ~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
... +.+-.++-+-|||||.+|+-
T Consensus 149 ~a~---------~~ip~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 149 AAV---------PEIPEALLEQLKPGGRLVAP 171 (209)
T ss_dssp SBB---------SS--HHHHHTEEEEEEEEEE
T ss_pred ecc---------chHHHHHHHhcCCCcEEEEE
Confidence 433 22334445569999999984
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0058 Score=62.95 Aligned_cols=118 Identities=16% Similarity=0.113 Sum_probs=70.7
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHc----CCCeEEEEccc
Q 006905 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALER----GVPALIGVLAA 266 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~er----g~~~~~~v~d~ 266 (626)
..|.+.|...........++||=||-|.|..+..+++. .++++++++..+..+..-+.... .....+...|.
T Consensus 60 ~~y~e~l~h~~~~~~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg 139 (246)
T PF01564_consen 60 FIYHEMLVHPPLLLHPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDG 139 (246)
T ss_dssp HHHHHHHHHHHHHHSSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTH
T ss_pred HHHHHHHhhhHhhcCCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhh
Confidence 34555554433333335679999999999999999886 57888886643332221122111 23456666664
Q ss_pred cc-CCCCCC-CeeEEEecccccccccc----HHHHHHHHHhcccCCeEEEEEe
Q 006905 267 ER-LPYPSR-AFDMAHCSRCLIPWNQF----GGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 267 ~~-Lpf~d~-sFDlV~~~~~l~h~~~~----~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
.. +.-..+ .||+|+.-..- +.... ...+++.+.++|+|||.+++..
T Consensus 140 ~~~l~~~~~~~yDvIi~D~~d-p~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 140 RKFLKETQEEKYDVIIVDLTD-PDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp HHHHHTSSST-EEEEEEESSS-TTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHhccCCcccEEEEeCCC-CCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 32 222233 89999973322 21111 1689999999999999999964
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0043 Score=60.57 Aligned_cols=115 Identities=11% Similarity=0.140 Sum_probs=75.0
Q ss_pred eEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHH----HHHhcc---cceec-cccccCCCCCCccceeeeccccc
Q 006905 472 NILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGV----IYERGL---VGTYT-NWCEAMSTYPRTYDLIHADSVFS 543 (626)
Q Consensus 472 ~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~----~~~rgl---i~~~~-~~~e~~~~yp~t~Dlih~~~~f~ 543 (626)
+|||+|||-|.+=..|++.+.- --++++|-++..++. +-.+|+ |.... |.-.. ...+.-||+||--+-+.
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~-~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQ-SKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCC-CCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEeecCcee
Confidence 8999999999999999988642 227888888777763 344555 22211 21111 22368899988655544
Q ss_pred ---cCCC--CCCHHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHhCC
Q 006905 544 ---LYKD--RCETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALK 588 (626)
Q Consensus 544 ---~~~~--~c~~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~l~ 588 (626)
...+ ...+.-.+--++++|+|||.|+|+.-.-..++|.+......
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~~~ 197 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFENFN 197 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhcCC
Confidence 2211 11224467788999999999999976655566666555444
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.011 Score=63.02 Aligned_cols=128 Identities=13% Similarity=0.143 Sum_probs=78.4
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cccceeccccccCCCC----CCccceeeecccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GLVGTYTNWCEAMSTY----PRTYDLIHADSVF 542 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gli~~~~~~~e~~~~y----p~t~Dlih~~~~f 542 (626)
..|||+|||.|.|+..|++++. .|+++|.++.+++.+.+. |+ ...+-.+.....+ ...||+|..+
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~~---~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~d--- 247 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPGM---QLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDLVLVN--- 247 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeEEEEC---
Confidence 5799999999999999999764 799999999999877654 33 1111122222222 2579999885
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEEEcChHH-HHHHHHHHHhCCCeeE---EeecCCCCCCcceEEEEEe
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIFRDDVDE-LVKVKRIIDALKWQSQ---IVDHEDGPLEREKLLFAVK 611 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~~~-~~~~~~~~~~l~w~~~---~~~~e~~~~~~e~~l~~~K 611 (626)
..|..+...+.++-.-++|++.++++-.... ...++.+ . .|++. .+|.=.....=|-|.+.+|
T Consensus 248 ---PPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l-~--~y~~~~~~~~DmFP~T~HvE~v~~l~r 314 (315)
T PRK03522 248 ---PPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL-P--GYRIERVQLFDMFPHTAHYEVLTLLVR 314 (315)
T ss_pred ---CCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc-c--CcEEEEEEEeccCCCCCeEEEEEEEEc
Confidence 2243444444454445789999999855443 3444444 2 46654 3333323223355555544
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0071 Score=60.69 Aligned_cols=119 Identities=14% Similarity=0.118 Sum_probs=61.3
Q ss_pred CCCCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHH---H----HcC
Q 006905 188 TMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFA---L----ERG 256 (626)
Q Consensus 188 t~F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A---~----erg 256 (626)
..+++-....+..+.+.+.+.. ....+|||||.|......+-. ...++++.+. .+..+.... . ..|
T Consensus 21 ~~YGEi~~~~~~~il~~~~l~~--~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~-~~~~a~~~~~~~~~~~~~~g 97 (205)
T PF08123_consen 21 ETYGEISPEFVSKILDELNLTP--DDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPE-LHDLAEELLEELKKRMKHYG 97 (205)
T ss_dssp CCGGGCHHHHHHHHHHHTT--T--T-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHH-HHHHHHHHHHHHHHHHHHCT
T ss_pred cceeecCHHHHHHHHHHhCCCC--CCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechH-HHHHHHHHHHHHHHHHHHhh
Confidence 3455656666666666665544 459999999999655443332 4788888763 333222211 1 122
Q ss_pred C---CeEEEEcccccCCCCC---CCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEE
Q 006905 257 V---PALIGVLAAERLPYPS---RAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWIL 311 (626)
Q Consensus 257 ~---~~~~~v~d~~~Lpf~d---~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvi 311 (626)
. ++.+..+|....++.. ..-|+|+++... +.++....|.++..-||+|-++|-
T Consensus 98 ~~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 98 KRPGKVELIHGDFLDPDFVKDIWSDADVVFVNNTC--FDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp B---EEEEECS-TTTHHHHHHHGHC-SEEEE--TT--T-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred cccccceeeccCccccHhHhhhhcCCCEEEEeccc--cCHHHHHHHHHHHhcCCCCCEEEE
Confidence 2 2334444432222110 246999998765 455556777888889999877653
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.024 Score=59.01 Aligned_cols=93 Identities=8% Similarity=0.003 Sum_probs=63.3
Q ss_pred cCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHc---------CCCeEEEEcccccCCCCCCC
Q 006905 207 LNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALER---------GVPALIGVLAAERLPYPSRA 275 (626)
Q Consensus 207 l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~er---------g~~~~~~v~d~~~Lpf~d~s 275 (626)
...+..++||=||.|.|..++.+++. .|+.+|+++ ..++.+++. ...+.+.. ... .-..++
T Consensus 68 ~~h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~-----~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~--~~~~~~ 139 (262)
T PRK00536 68 CTKKELKEVLIVDGFDLELAHQLFKYDTHVDFVQADE-----KILDSFISFFPHFHEVKNNKNFTHAK-QLL--DLDIKK 139 (262)
T ss_pred hhCCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCH-----HHHHHHHHHCHHHHHhhcCCCEEEee-hhh--hccCCc
Confidence 34455789999999999999999997 577787765 344444431 11222221 111 112368
Q ss_pred eeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 276 FDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 276 FDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
||+|+.-.. ....+++.+.|+|+|||.++...
T Consensus 140 fDVIIvDs~------~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 140 YDLIICLQE------PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CCEEEEcCC------CChHHHHHHHHhcCCCcEEEECC
Confidence 999998542 23678899999999999999964
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.016 Score=64.55 Aligned_cols=100 Identities=20% Similarity=0.220 Sum_probs=69.9
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEcccccCCCC---CCCeeEEEecccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAERLPYP---SRAFDMAHCSRCL 285 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~~Lpf~---d~sFDlV~~~~~l 285 (626)
..++||+=||.|.|+..|+++ .|+++++++..+..++ +.|+.+++. +.+..+++++..-. ...||.|+.....
T Consensus 294 ~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~-~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR 372 (432)
T COG2265 294 GERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQ-ENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDPPR 372 (432)
T ss_pred CCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHH-HHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECCCC
Confidence 458999999999999999976 8999999996665444 455566665 66777776665422 3578999886533
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 006905 286 IPWNQFGGIYLIEVDRVLRPGGYWILSGPPI 316 (626)
Q Consensus 286 ~h~~~~~~~~L~Ei~RvLKPGG~lvis~pp~ 316 (626)
..-...+++.+.+ ++|-..+++|..|.
T Consensus 373 ---~G~~~~~lk~l~~-~~p~~IvYVSCNP~ 399 (432)
T COG2265 373 ---AGADREVLKQLAK-LKPKRIVYVSCNPA 399 (432)
T ss_pred ---CCCCHHHHHHHHh-cCCCcEEEEeCCHH
Confidence 2111355555544 57888999996543
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.015 Score=60.90 Aligned_cols=97 Identities=16% Similarity=0.140 Sum_probs=56.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHH---cCCCeEEE--Ecc--cccCCCCCCCeeE
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALE---RGVPALIG--VLA--AERLPYPSRAFDM 278 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~e---rg~~~~~~--v~d--~~~Lpf~d~sFDl 278 (626)
..++|||+|||.|.....+.+. .++.+|.++. +.++++. ........ ... ....++. ..|+
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~-----~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~DL 105 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPE-----MLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP--PDDL 105 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHH-----HHHHHHHHHhcccccccchhhhhhhcccccCC--CCcE
Confidence 3568999999999655544432 5666666553 4443332 11111100 001 1122332 3499
Q ss_pred EEeccccccccccH-HHHHHHHHhcccCCeEEEEEeCCC
Q 006905 279 AHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILSGPPI 316 (626)
Q Consensus 279 V~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~pp~ 316 (626)
|+++++|....+.. ..+++.+.+.+.+ +|+|..|..
T Consensus 106 vi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt 142 (274)
T PF09243_consen 106 VIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGT 142 (274)
T ss_pred EEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCC
Confidence 99999997776632 5667777777766 888887633
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0014 Score=66.09 Aligned_cols=123 Identities=22% Similarity=0.298 Sum_probs=82.2
Q ss_pred CCceeEEeccCchhhHhhhhhCCCe-EEEEeccCccCcccHHHH----HHhcc----cceec-cccccCCCCC-Cccc-e
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPV-WVMNVVPAEAKINTLGVI----YERGL----VGTYT-NWCEAMSTYP-RTYD-L 535 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v-~~mnv~~~~~~~~~l~~~----~~rgl----i~~~~-~~~e~~~~yp-~t~D-l 535 (626)
.+--+|||.-.|.|-+|..-+++|. .|. -++-.+|.|+.+ +.|+| |-+++ |--|...+++ .+|| +
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~Vi---tvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaI 209 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVI---TVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAI 209 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEE---EEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceE
Confidence 4567899999999999999999987 333 233334566544 34555 34444 4456677788 7899 5
Q ss_pred eeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEE--------cChHHHHHHHHHHHhCCCeeEEe
Q 006905 536 IHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFR--------DDVDELVKVKRIIDALKWQSQIV 594 (626)
Q Consensus 536 ih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~--------d~~~~~~~~~~~~~~l~w~~~~~ 594 (626)
||=--=||+...- =-+.+-.|+.|||||||.++== -..+....+.+.+.+.-....-.
T Consensus 210 iHDPPRfS~AgeL-YseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~ 275 (287)
T COG2521 210 IHDPPRFSLAGEL-YSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKK 275 (287)
T ss_pred eeCCCccchhhhH-hHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeee
Confidence 6765566654421 1156889999999999998752 12355667777777777774433
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.00066 Score=64.39 Aligned_cols=53 Identities=21% Similarity=0.281 Sum_probs=46.4
Q ss_pred cccCCCCCCCeeEEEeccccccccccH-HHHHHHHHhcccCCeEEEEEeCCCCc
Q 006905 266 AERLPYPSRAFDMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILSGPPINW 318 (626)
Q Consensus 266 ~~~Lpf~d~sFDlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~pp~~w 318 (626)
....+|.+++.|+|.|.++++|+..+. ..++++++|+|||||+|-++.|....
T Consensus 38 s~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f 91 (185)
T COG4627 38 SNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKF 91 (185)
T ss_pred hhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcch
Confidence 456789999999999999999987655 68999999999999999999886653
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.018 Score=60.35 Aligned_cols=129 Identities=16% Similarity=0.200 Sum_probs=79.6
Q ss_pred CCceeEEeccCchhhHhhhhhC----CCeEEEEeccCccCcccHHHH----HHhcc---cceec-cccccCCCC-----C
Q 006905 468 GRYRNILDMNAHLGGFAAALID----FPVWVMNVVPAEAKINTLGVI----YERGL---VGTYT-NWCEAMSTY-----P 530 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~----~~v~~mnv~~~~~~~~~l~~~----~~rgl---i~~~~-~~~e~~~~y-----p 530 (626)
..-++||++|+|+|..+.+|+. .+. |+.+|..+...+++ .+-|+ |.+.+ +-.+.+..+ +
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~----V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~ 192 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGC----LVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEG 192 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCE----EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccC
Confidence 3468999999999999998875 232 66667766666655 33444 22332 122222222 3
Q ss_pred CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh------------HHHHHHHHH----HHhCCCeeEEe
Q 006905 531 RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV------------DELVKVKRI----IDALKWQSQIV 594 (626)
Q Consensus 531 ~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~------------~~~~~~~~~----~~~l~w~~~~~ 594 (626)
.+||+|-.+. ++-+...++...-+.|||||.+|+-+.. .....|+++ .+.=++++.+.
T Consensus 193 ~~FD~VFIDa------~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~ll 266 (278)
T PLN02476 193 SSYDFAFVDA------DKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMV 266 (278)
T ss_pred CCCCEEEECC------CHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEE
Confidence 6899998743 2235567888889999999999884210 112234443 44456777765
Q ss_pred ecCCCCCCcceEEEEEec
Q 006905 595 DHEDGPLEREKLLFAVKL 612 (626)
Q Consensus 595 ~~e~~~~~~e~~l~~~K~ 612 (626)
-. .+.+++++|+
T Consensus 267 Pi------gDGl~i~~K~ 278 (278)
T PLN02476 267 PI------GDGMTICRKR 278 (278)
T ss_pred Ee------CCeeEEEEEC
Confidence 43 3678888874
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.024 Score=58.18 Aligned_cols=109 Identities=17% Similarity=0.210 Sum_probs=74.1
Q ss_pred cCCCCCceeEEeccCchhhHhhhhh----CCCeEEEEeccCccCcccHHHHHHh----cccc-eec---cccccCCCCCC
Q 006905 464 LGQSGRYRNILDMNAHLGGFAAALI----DFPVWVMNVVPAEAKINTLGVIYER----GLVG-TYT---NWCEAMSTYPR 531 (626)
Q Consensus 464 ~~~~~~~r~vlD~g~g~G~faa~l~----~~~v~~mnv~~~~~~~~~l~~~~~r----gli~-~~~---~~~e~~~~yp~ 531 (626)
|.+ --.|||.|.|+|.++++|+ +.| .|+..+..++..+.|.+. |+.. +-+ |-++... +.
T Consensus 92 i~p---g~rVlEAGtGSG~lt~~La~~vg~~G----~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~--~~ 162 (256)
T COG2519 92 ISP---GSRVLEAGTGSGALTAYLARAVGPEG----HVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID--EE 162 (256)
T ss_pred CCC---CCEEEEcccCchHHHHHHHHhhCCCc----eEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc--cc
Confidence 555 4469999999999999998 333 466667777777766553 5533 211 3344333 46
Q ss_pred ccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEE-cChHHHHHHHHHHHhCCC
Q 006905 532 TYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFR-DDVDELVKVKRIIDALKW 589 (626)
Q Consensus 532 t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~-d~~~~~~~~~~~~~~l~w 589 (626)
.||.|.. +-=+.-.+|.-++.+|+|||.+++- -..+++.++-+.++..+|
T Consensus 163 ~vDav~L--------Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~ 213 (256)
T COG2519 163 DVDAVFL--------DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGF 213 (256)
T ss_pred ccCEEEE--------cCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 8998887 3223346999999999999999884 455666666665665555
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.021 Score=57.75 Aligned_cols=109 Identities=17% Similarity=0.126 Sum_probs=69.0
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEccc-cc
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAA-ER 268 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~-~~ 268 (626)
..+.+..++.+.+ .++.||||.=+|.-+..++.. .++++|+.+..... ..++.+..|+. +.+.++.+ +.
T Consensus 61 ~g~fl~~li~~~~--ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~-~~~~~k~agv~~KI~~i~g~a~es 137 (237)
T KOG1663|consen 61 KGQFLQMLIRLLN--AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEI-GLELVKLAGVDHKITFIEGPALES 137 (237)
T ss_pred HHHHHHHHHHHhC--CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHH-hHHHHHhccccceeeeeecchhhh
Confidence 3334444444444 348999998777444444332 78999997743332 23444444553 44454442 22
Q ss_pred CC-----CCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEE
Q 006905 269 LP-----YPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 269 Lp-----f~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
|+ ...++||+|+. .||-+....++.++.++||+||.+++.
T Consensus 138 Ld~l~~~~~~~tfDfaFv----DadK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 138 LDELLADGESGTFDFAFV----DADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred HHHHHhcCCCCceeEEEE----ccchHHHHHHHHHHHhhcccccEEEEe
Confidence 22 35789999976 346655578999999999999999996
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0095 Score=72.61 Aligned_cols=119 Identities=14% Similarity=0.100 Sum_probs=78.9
Q ss_pred eeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhcc----------------------cceec-cccccC
Q 006905 471 RNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERGL----------------------VGTYT-NWCEAM 526 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rgl----------------------i~~~~-~~~e~~ 526 (626)
..|||+|||+|-.+.+|+++ +. -.|+.+|.+++.++++.+..- +.+++ ||.+.+
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~--~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLP--SKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 46999999999999999875 22 278999999999987743321 23333 565544
Q ss_pred CCCCCccceeeecccc---------c-----cC--------CCCCCH-------------HHHHHHhhhhccCCcEEEEE
Q 006905 527 STYPRTYDLIHADSVF---------S-----LY--------KDRCET-------------EDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 527 ~~yp~t~Dlih~~~~f---------~-----~~--------~~~c~~-------------~~~l~E~dRiLRPgG~~i~~ 571 (626)
......||+|.++==. + +. ...|-+ ..++.+.-++|||||++++-
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 2111269988875321 0 00 012222 45889999999999999997
Q ss_pred cChHHHHHHH-HHHHhCCCee
Q 006905 572 DDVDELVKVK-RIIDALKWQS 591 (626)
Q Consensus 572 d~~~~~~~~~-~~~~~l~w~~ 591 (626)
-..+.-+.++ +++.+..|+.
T Consensus 278 iG~~q~~~v~~~l~~~~gf~~ 298 (1082)
T PLN02672 278 MGGRPGQAVCERLFERRGFRI 298 (1082)
T ss_pred ECccHHHHHHHHHHHHCCCCe
Confidence 6655566777 5777666654
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.012 Score=63.90 Aligned_cols=107 Identities=19% Similarity=0.268 Sum_probs=68.7
Q ss_pred CCCCCCEEEEeCCCCchHHHHHhhC--C----cEEEeCCccchHHHHHHHHHHcCCCe-EEEEcccccCC--CCC-CCee
Q 006905 208 NDGSIRTAIDTGCGVASWGAYLLSR--N----IITMSFAPRDTHEAQVQFALERGVPA-LIGVLAAERLP--YPS-RAFD 277 (626)
Q Consensus 208 ~~~~~~~VLDIGCGtG~~a~~La~~--~----V~avdis~~dls~a~i~~A~erg~~~-~~~v~d~~~Lp--f~d-~sFD 277 (626)
.+.++.+|||+.++.|.=+.++++. + |+++|+++.-+ ....+...+.|+.+ .....|...++ .+. +.||
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl-~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD 231 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRL-KRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFD 231 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHH-HHHHHHHHHcCCCceEEEecccccccccccccCcCc
Confidence 4444569999999999766666664 2 47899877433 34445555667764 44555655554 222 3599
Q ss_pred EEEe----c--cccc-----cccc----------cHHHHHHHHHhcccCCeEEEEEeCC
Q 006905 278 MAHC----S--RCLI-----PWNQ----------FGGIYLIEVDRVLRPGGYWILSGPP 315 (626)
Q Consensus 278 lV~~----~--~~l~-----h~~~----------~~~~~L~Ei~RvLKPGG~lvis~pp 315 (626)
.|.. + .++. -|.. -+..+|....++|||||.|+.++-.
T Consensus 232 ~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 232 RILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred EEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 9995 2 2220 0111 1137899999999999999998643
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.023 Score=64.79 Aligned_cols=20 Identities=35% Similarity=0.375 Sum_probs=16.9
Q ss_pred CCEEEEeCCCCchHHHHHhh
Q 006905 212 IRTAIDTGCGVASWGAYLLS 231 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~ 231 (626)
..+|||.|||+|.|...++.
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~ 51 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLK 51 (524)
T ss_pred ceEEEeCCCCccHHHHHHHH
Confidence 45899999999988877765
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.031 Score=57.92 Aligned_cols=85 Identities=15% Similarity=0.078 Sum_probs=59.3
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCC
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSR 274 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~ 274 (626)
.++.|.+.+...+ +.+|||||+|.|.++..|+++ .|+++++++.... ...+... ......+..+|+...++++.
T Consensus 18 v~~kIv~~a~~~~--~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~-~L~~~~~-~~~n~~vi~~DaLk~d~~~l 93 (259)
T COG0030 18 VIDKIVEAANISP--GDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAE-VLKERFA-PYDNLTVINGDALKFDFPSL 93 (259)
T ss_pred HHHHHHHhcCCCC--CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHH-HHHHhcc-cccceEEEeCchhcCcchhh
Confidence 4566777665555 458999999999999999997 6888888763222 2211111 22346677788888887754
Q ss_pred -CeeEEEecccc
Q 006905 275 -AFDMAHCSRCL 285 (626)
Q Consensus 275 -sFDlV~~~~~l 285 (626)
.++.|+++.-.
T Consensus 94 ~~~~~vVaNlPY 105 (259)
T COG0030 94 AQPYKVVANLPY 105 (259)
T ss_pred cCCCEEEEcCCC
Confidence 68999998844
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0082 Score=56.61 Aligned_cols=74 Identities=18% Similarity=0.146 Sum_probs=54.0
Q ss_pred CCCEEEEeCCCCchHH--HHHhh-CCcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccc
Q 006905 211 SIRTAIDTGCGVASWG--AYLLS-RNIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a--~~La~-~~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l 285 (626)
.+.+++|+|||.|-+. ..+.+ ..+.++|+++..+ +...+.+.+..+.+.+.+++...+-+..+.||.++.+.-+
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeAL-EIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEAL-EIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHH-HHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 4678999999999554 33333 4789999988433 4455556666677777778877777777899999988755
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.0063 Score=64.94 Aligned_cols=95 Identities=20% Similarity=0.319 Sum_probs=67.8
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccH----HHHHHhcc---cceeccccccCCCCC-Cccceeeeccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTL----GVIYERGL---VGTYTNWCEAMSTYP-RTYDLIHADSV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l----~~~~~rgl---i~~~~~~~e~~~~yp-~t~Dlih~~~~ 541 (626)
-++|||+|||+|-+...-++.|. -+|.+++++ ++. +++.+.|+ |.++++--|.+ ..| .-.|+|-+-++
T Consensus 61 dK~VlDVGcGtGILS~F~akAGA--~~V~aVe~S-~ia~~a~~iv~~N~~~~ii~vi~gkvEdi-~LP~eKVDiIvSEWM 136 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAGA--RKVYAVEAS-SIADFARKIVKDNGLEDVITVIKGKVEDI-ELPVEKVDIIVSEWM 136 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhCc--ceEEEEech-HHHHHHHHHHHhcCccceEEEeecceEEE-ecCccceeEEeehhh
Confidence 56799999999998877777764 366777776 544 36666777 55555544555 567 99999998554
Q ss_pred --cccCCCCCCHHHHHHHhhhhccCCcEEEE
Q 006905 542 --FSLYKDRCETEDILLEMDRILRPEGGVIF 570 (626)
Q Consensus 542 --f~~~~~~c~~~~~l~E~dRiLRPgG~~i~ 570 (626)
|..+++ .+..+|.-=||.|+|||.++=
T Consensus 137 Gy~Ll~Es--MldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 137 GYFLLYES--MLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred hHHHHHhh--hhhhhhhhhhhccCCCceEcc
Confidence 334443 445688888999999998763
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.037 Score=59.21 Aligned_cols=102 Identities=9% Similarity=0.040 Sum_probs=60.7
Q ss_pred CCEEEEeCCCCchHHHHHhhC--------CcEEEeCCccchHHHHHHHHHHcCCCeEE--EEccccc----CCC--CCCC
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--------NIITMSFAPRDTHEAQVQFALERGVPALI--GVLAAER----LPY--PSRA 275 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--------~V~avdis~~dls~a~i~~A~erg~~~~~--~v~d~~~----Lpf--~d~s 275 (626)
+..++|+|||+|.=+..|++. .++++|++...+..+..+.....-..+.+ ..+|..+ ++- ....
T Consensus 77 ~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~ 156 (319)
T TIGR03439 77 GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSR 156 (319)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCC
Confidence 447999999999765555442 37788887755554444443122122332 3344211 322 1234
Q ss_pred eeEEEecc-ccccccccH-HHHHHHHHh-cccCCeEEEEEe
Q 006905 276 FDMAHCSR-CLIPWNQFG-GIYLIEVDR-VLRPGGYWILSG 313 (626)
Q Consensus 276 FDlV~~~~-~l~h~~~~~-~~~L~Ei~R-vLKPGG~lvis~ 313 (626)
..+++.-. ++-.+.... ..+|+++.+ .|+|||.|+|..
T Consensus 157 ~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 157 PTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred ccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 67777644 343333322 578999999 999999999964
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.092 Score=51.88 Aligned_cols=136 Identities=16% Similarity=0.147 Sum_probs=78.2
Q ss_pred cCCceecCCCCCCCCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHH
Q 006905 177 EGDRFRFPGGGTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFAL 253 (626)
Q Consensus 177 ~ge~~~Fp~ggt~F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~ 253 (626)
.|..+.+|.+.+. ....+..-+.+-.++....-.+.++||+=+|+|.++...+.+ .++.+|.+..... ...+...
T Consensus 10 kgr~L~~p~~~~~-RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~-~l~~N~~ 87 (187)
T COG0742 10 KGRKLKTPDGPGT-RPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVK-ILKENLK 87 (187)
T ss_pred cCCcccCCCCCCc-CCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHH-HHHHHHH
Confidence 4566666665332 233344445555665431134669999999999999999998 5677777553222 1222222
Q ss_pred HcC--CCeEEEEccccc-CCCCCC--CeeEEEeccccccccccHHHHHH--HHHhcccCCeEEEEEeC
Q 006905 254 ERG--VPALIGVLAAER-LPYPSR--AFDMAHCSRCLIPWNQFGGIYLI--EVDRVLRPGGYWILSGP 314 (626)
Q Consensus 254 erg--~~~~~~v~d~~~-Lpf~d~--sFDlV~~~~~l~h~~~~~~~~L~--Ei~RvLKPGG~lvis~p 314 (626)
.-+ ....+...|+.. |+.... .||+|+.-.-+..-.-+....+. +-...|+|+|.+++...
T Consensus 88 ~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 88 ALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred HhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 333 345555556443 222223 49999997755211111122222 35578999999999854
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.074 Score=55.21 Aligned_cols=157 Identities=16% Similarity=0.193 Sum_probs=93.1
Q ss_pred hhHHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhcc-------cc
Q 006905 446 NSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERGL-------VG 517 (626)
Q Consensus 446 d~~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rgl-------i~ 517 (626)
.|+-|.+.|..-.+ .... ..--.+||+|||+|..+-.|+.. + -..|+++|-++..+..+.|... |.
T Consensus 129 ETEE~V~~Vid~~~---~~~~-~~~~~ildlgtGSGaIslsll~~L~--~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~ 202 (328)
T KOG2904|consen 129 ETEEWVEAVIDALN---NSEH-SKHTHILDLGTGSGAISLSLLHGLP--QCTVTAIDVSKAAIKLAKENAQRLKLSGRIE 202 (328)
T ss_pred cHHHHHHHHHHHHh---hhhh-cccceEEEecCCccHHHHHHHhcCC--CceEEEEeccHHHHHHHHHHHHHHhhcCceE
Confidence 46788888864222 1111 12227999999999999888754 2 2257888988887777766533 66
Q ss_pred eecc--ccccCCCCC---Cccceeeeccc--cc-----------cCCCC--------CC--HHHHHHHhhhhccCCcEEE
Q 006905 518 TYTN--WCEAMSTYP---RTYDLIHADSV--FS-----------LYKDR--------CE--TEDILLEMDRILRPEGGVI 569 (626)
Q Consensus 518 ~~~~--~~e~~~~yp---~t~Dlih~~~~--f~-----------~~~~~--------c~--~~~~l~E~dRiLRPgG~~i 569 (626)
+.|. =.+.+.++| ..+|+|.++-= ++ .|+++ |. +..+..=.-|.|+|||.++
T Consensus 203 v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~ 282 (328)
T KOG2904|consen 203 VIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQ 282 (328)
T ss_pred EEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEE
Confidence 7663 245566676 99999988632 22 11111 11 1124555679999999999
Q ss_pred EEcC-----hHHHHH-HHHHHHhCCCeeEEeecCCCCCCcceEEEEEe
Q 006905 570 FRDD-----VDELVK-VKRIIDALKWQSQIVDHEDGPLEREKLLFAVK 611 (626)
Q Consensus 570 ~~d~-----~~~~~~-~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K 611 (626)
+.-. ...... |+...+.-.|.+.++.. -.+.+++++..+
T Consensus 283 le~~~~~~~~~lv~~~m~s~~~d~~~~~~v~~D---f~~~~Rfv~i~r 327 (328)
T KOG2904|consen 283 LELVERKEHSYLVRIWMISLKDDSNGKAAVVSD---FAGRPRFVIIHR 327 (328)
T ss_pred EEecccccCcHHHHHHHHhchhhccchhheeec---ccCCcceEEEEe
Confidence 9632 122222 33335555566655431 124566666543
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.018 Score=63.08 Aligned_cols=102 Identities=13% Similarity=0.035 Sum_probs=68.1
Q ss_pred CCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC---CeEEEEccccc-CC---CCCCCeeEEEe
Q 006905 212 IRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV---PALIGVLAAER-LP---YPSRAFDMAHC 281 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~---~~~~~v~d~~~-Lp---f~d~sFDlV~~ 281 (626)
+++|||+=|=||.|+.+.+.. .++.||++...+.-+..++. -+|+ ...+.++|+.. +. -...+||+|+.
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~-LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAE-LNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHH-hcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 569999999999999988875 67788776655544443333 3344 25677777433 32 23448999997
Q ss_pred cccccc------c--cccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 282 SRCLIP------W--NQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 282 ~~~l~h------~--~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
-..-.- | ..+...++....++|+|||.++++..
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~ 337 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSC 337 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 322100 1 11224788999999999999999864
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.02 Score=56.66 Aligned_cols=100 Identities=17% Similarity=0.134 Sum_probs=64.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIP 287 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h 287 (626)
.+++|||+|+|+|-.+..-+.. .|...|+.| ....+..-.+..+|+.+.+...|.. ..+..||+|+.+..+..
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P-~~~~ai~lNa~angv~i~~~~~d~~---g~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDP-WLEQAIRLNAAANGVSILFTHADLI---GSPPAFDLLLAGDLFYN 154 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCCh-HHHHHhhcchhhccceeEEeecccc---CCCcceeEEEeeceecC
Confidence 3679999999999555444443 788889876 3433333345567776666644322 25678999999887622
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 006905 288 WNQFGGIYLIEVDRVLRPGGYWILSGPPI 316 (626)
Q Consensus 288 ~~~~~~~~L~Ei~RvLKPGG~lvis~pp~ 316 (626)
+..-..++. +.+.|+-.|.-++.+.|.
T Consensus 155 -~~~a~~l~~-~~~~l~~~g~~vlvgdp~ 181 (218)
T COG3897 155 -HTEADRLIP-WKDRLAEAGAAVLVGDPG 181 (218)
T ss_pred -chHHHHHHH-HHHHHHhCCCEEEEeCCC
Confidence 222245555 777777777777776543
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.013 Score=58.63 Aligned_cols=134 Identities=19% Similarity=0.266 Sum_probs=90.3
Q ss_pred eEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHH----HHHHhcccc----eecccccc-------CCCCCCccce
Q 006905 472 NILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLG----VIYERGLVG----TYTNWCEA-------MSTYPRTYDL 535 (626)
Q Consensus 472 ~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~----~~~~rgli~----~~~~~~e~-------~~~yp~t~Dl 535 (626)
.||.+|+|+|--+++++.. +- +.--|.|...+.+. .+.+.|+.. +.-|-+.. -..++.+||.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~--l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPH--LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCC--CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 7999999999999999875 21 24577887755543 234566622 11122222 1224589999
Q ss_pred eeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEE------------------------cCh---HHHHHHHHHHHhCC
Q 006905 536 IHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFR------------------------DDV---DELVKVKRIIDALK 588 (626)
Q Consensus 536 ih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~------------------------d~~---~~~~~~~~~~~~l~ 588 (626)
|.|..+++.....|- +.+|.+..|+|+|||.+++= |+. --++.|..++.+-.
T Consensus 106 i~~~N~lHI~p~~~~-~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~G 184 (204)
T PF06080_consen 106 IFCINMLHISPWSAV-EGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHG 184 (204)
T ss_pred eeehhHHHhcCHHHH-HHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCC
Confidence 999888887666544 88999999999999999993 110 12667888888776
Q ss_pred CeeEEeecCCCCCCcceEEEEEe
Q 006905 589 WQSQIVDHEDGPLEREKLLFAVK 611 (626)
Q Consensus 589 w~~~~~~~e~~~~~~e~~l~~~K 611 (626)
+... +.-+-| ...++||++|
T Consensus 185 L~l~--~~~~MP-ANN~~Lvfrk 204 (204)
T PF06080_consen 185 LELE--EDIDMP-ANNLLLVFRK 204 (204)
T ss_pred CccC--cccccC-CCCeEEEEeC
Confidence 6643 222334 2478999987
|
The function of this family is unknown. |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.025 Score=59.93 Aligned_cols=97 Identities=10% Similarity=0.132 Sum_probs=56.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEcccccCCCCCCCeeEEEecccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAERLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~Lpf~d~sFDlV~~~~~l 285 (626)
.++.|||+|||+|.+....+.. .|.+++.+.. .+-+.++...+.+. +.+..+..+++.+| +..|+|++-..-
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~M--AqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG 253 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEM--AQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMG 253 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhHH--HHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccch
Confidence 4678999999999766555554 6788776441 12222222233332 33333446666555 579999984432
Q ss_pred ccccccHHHHH---HHHHhcccCCeEEEEE
Q 006905 286 IPWNQFGGIYL---IEVDRVLRPGGYWILS 312 (626)
Q Consensus 286 ~h~~~~~~~~L---~Ei~RvLKPGG~lvis 312 (626)
.-... +++| --..|.|+|.|..+=.
T Consensus 254 ~mL~N--ERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 254 YMLVN--ERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred hhhhh--HHHHHHHHHHHhhcCCCCcccCc
Confidence 11111 2322 2355999999998654
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.064 Score=57.65 Aligned_cols=91 Identities=15% Similarity=0.120 Sum_probs=58.9
Q ss_pred CCCCEEEEeCCCCchHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccc
Q 006905 210 GSIRTAIDTGCGVASWGAYLLSRN--IITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIP 287 (626)
Q Consensus 210 ~~~~~VLDIGCGtG~~a~~La~~~--V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h 287 (626)
.++.++|||||++|.|+..|.+++ |+++|..+.+. . ......+.....+..+..-+.+.+|+|+|-.+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~------~-L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv--- 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQ------S-LMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV--- 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCH------h-hhCCCCEEEEeccCcccCCCCCCCCEEEEecc---
Confidence 346799999999999999999996 66666543211 1 12223355555554443222678999999554
Q ss_pred ccccHHHHHHHHHhcccCC--eEEEEE
Q 006905 288 WNQFGGIYLIEVDRVLRPG--GYWILS 312 (626)
Q Consensus 288 ~~~~~~~~L~Ei~RvLKPG--G~lvis 312 (626)
..+...+.-+.+.|..| ..+|+.
T Consensus 280 --e~P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 280 --EKPARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred --cCHHHHHHHHHHHHhcCcccEEEEE
Confidence 45667777777777665 355554
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.11 Score=52.41 Aligned_cols=93 Identities=17% Similarity=0.170 Sum_probs=59.3
Q ss_pred CCEEEEeCCCCchHHHHHh----hCCcEEEeCCccchHHHHHH-HHHHcCCC-eEEEEcccccCCCCCCCeeEEEecccc
Q 006905 212 IRTAIDTGCGVASWGAYLL----SRNIITMSFAPRDTHEAQVQ-FALERGVP-ALIGVLAAERLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La----~~~V~avdis~~dls~a~i~-~A~erg~~-~~~~v~d~~~Lpf~d~sFDlV~~~~~l 285 (626)
..+++|||+|.|.-+.-|+ +.+++-+|-...- .++++ ...+-+++ +.+....++.+.-...-||+|+|..+.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk--~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKK--IAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchH--HHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc
Confidence 4689999999996555544 2366666654432 23333 34455776 555555566665321119999985533
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEE
Q 006905 286 IPWNQFGGIYLIEVDRVLRPGGYWIL 311 (626)
Q Consensus 286 ~h~~~~~~~~L~Ei~RvLKPGG~lvi 311 (626)
....++.-....||+||.++.
T Consensus 146 -----~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 146 -----SLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred -----chHHHHHHHHHhcccCCcchh
Confidence 346677778899999998865
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.025 Score=56.73 Aligned_cols=130 Identities=16% Similarity=0.212 Sum_probs=79.3
Q ss_pred CCceeEEeccCchhhHhhhhhCC---CeEEEEeccCccCcccHHHH----HHhcc---cceec-cccccCCCC-----CC
Q 006905 468 GRYRNILDMNAHLGGFAAALIDF---PVWVMNVVPAEAKINTLGVI----YERGL---VGTYT-NWCEAMSTY-----PR 531 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~---~v~~mnv~~~~~~~~~l~~~----~~rgl---i~~~~-~~~e~~~~y-----p~ 531 (626)
.+-++||.+|+++|--|.+|+.. +- .|+-++..+...+++ ..-|+ |.+.+ +..+.+..+ +.
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g---~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~ 120 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDG---KITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEG 120 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTS---EEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTT
T ss_pred cCCceEEEeccccccHHHHHHHhhcccc---eEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCC
Confidence 34789999999999888888742 22 355556665566655 34455 44444 333333332 25
Q ss_pred ccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh----------------HHHHHHHHHHHhCCCeeEEee
Q 006905 532 TYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV----------------DELVKVKRIIDALKWQSQIVD 595 (626)
Q Consensus 532 t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~----------------~~~~~~~~~~~~l~w~~~~~~ 595 (626)
+||+|-.+. ++-+....+..+-+.|||||.+|+-+.. .+.+-.+.+.+.=+.++.+..
T Consensus 121 ~fD~VFiDa------~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~llp 194 (205)
T PF01596_consen 121 QFDFVFIDA------DKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLLP 194 (205)
T ss_dssp SEEEEEEES------TGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEEC
T ss_pred ceeEEEEcc------cccchhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEEE
Confidence 899998744 2335567777888999999999986321 112222334555567777664
Q ss_pred cCCCCCCcceEEEEEec
Q 006905 596 HEDGPLEREKLLFAVKL 612 (626)
Q Consensus 596 ~e~~~~~~e~~l~~~K~ 612 (626)
. .+.|++++|+
T Consensus 195 i------gdGl~l~~K~ 205 (205)
T PF01596_consen 195 I------GDGLTLARKR 205 (205)
T ss_dssp S------TTEEEEEEE-
T ss_pred e------CCeeEEEEEC
Confidence 3 3678999884
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.02 Score=60.47 Aligned_cols=138 Identities=14% Similarity=0.203 Sum_probs=78.9
Q ss_pred hchhhhHHHHHHHH--HHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc-----
Q 006905 442 IFQQNSELWKKRLS--YYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG----- 514 (626)
Q Consensus 442 ~f~~d~~~w~~~v~--~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg----- 514 (626)
.|..+-+.|.+.|- .|. .+.+-|+|||||-||=....-+-++ --++.+|..+--++-+..|=
T Consensus 97 i~lRnfNNwIKs~LI~~y~---------~~~~~~~~LgCGKGGDLlKw~kAgI--~~~igiDIAevSI~qa~~RYrdm~~ 165 (389)
T KOG1975|consen 97 IFLRNFNNWIKSVLINLYT---------KRGDDVLDLGCGKGGDLLKWDKAGI--GEYIGIDIAEVSINQARKRYRDMKN 165 (389)
T ss_pred eehhhhhHHHHHHHHHHHh---------ccccccceeccCCcccHhHhhhhcc--cceEeeehhhccHHHHHHHHHHHHh
Confidence 35555566766542 222 3366699999999985433333332 23556666544444443332
Q ss_pred ----------ccc---eeccccccCCCCC-CccceeeeccccccC-CCCCCHHHHHHHhhhhccCCcEEEEEcC--hHHH
Q 006905 515 ----------LVG---TYTNWCEAMSTYP-RTYDLIHADSVFSLY-KDRCETEDILLEMDRILRPEGGVIFRDD--VDEL 577 (626)
Q Consensus 515 ----------li~---~~~~~~e~~~~yp-~t~Dlih~~~~f~~~-~~~c~~~~~l~E~dRiLRPgG~~i~~d~--~~~~ 577 (626)
+|. +.-..-+.+. ++ ..||+|-|+-.|++. .......-.|.-+-+-|||||+||=+-+ ..++
T Consensus 166 r~~~~~f~a~f~~~Dc~~~~l~d~~e-~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii 244 (389)
T KOG1975|consen 166 RFKKFIFTAVFIAADCFKERLMDLLE-FKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVII 244 (389)
T ss_pred hhhcccceeEEEEeccchhHHHHhcc-CCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHH
Confidence 111 0001112222 34 449999998888743 3323334588899999999999999844 3466
Q ss_pred HHHHHHHHhCCCeeE
Q 006905 578 VKVKRIIDALKWQSQ 592 (626)
Q Consensus 578 ~~~~~~~~~l~w~~~ 592 (626)
.+++.. ...+|.-.
T Consensus 245 ~rlr~~-e~~~~gNd 258 (389)
T KOG1975|consen 245 KRLRAG-EVERFGND 258 (389)
T ss_pred HHHHhc-cchhhcce
Confidence 677665 33455433
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.043 Score=56.83 Aligned_cols=82 Identities=20% Similarity=0.271 Sum_probs=55.3
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCC----eEEEEcccccCC
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVP----ALIGVLAAERLP 270 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~----~~~~v~d~~~Lp 270 (626)
.+++|.+-.++.+ ...||++|-|||.++..|++. .|+++++++.++.+-.... .|.+ ..+..+|....+
T Consensus 46 v~~~I~~ka~~k~--tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv---~gtp~~~kLqV~~gD~lK~d 120 (315)
T KOG0820|consen 46 VIDQIVEKADLKP--TDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRV---QGTPKSGKLQVLHGDFLKTD 120 (315)
T ss_pred HHHHHHhccCCCC--CCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHh---cCCCccceeeEEecccccCC
Confidence 3445555554554 448999999999999999997 7889999886665433222 2333 345556655555
Q ss_pred CCCCCeeEEEecccc
Q 006905 271 YPSRAFDMAHCSRCL 285 (626)
Q Consensus 271 f~d~sFDlV~~~~~l 285 (626)
+| .||.++++.-.
T Consensus 121 ~P--~fd~cVsNlPy 133 (315)
T KOG0820|consen 121 LP--RFDGCVSNLPY 133 (315)
T ss_pred Cc--ccceeeccCCc
Confidence 43 59999997744
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.056 Score=56.25 Aligned_cols=110 Identities=15% Similarity=0.091 Sum_probs=74.8
Q ss_pred chhhhHHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh------cc-
Q 006905 443 FQQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER------GL- 515 (626)
Q Consensus 443 f~~d~~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r------gl- 515 (626)
-+.|...+++.+.|=. -+.- +.-++||=+|.|-||.++.+++.+- +|+-+|..+.+++++.+- ++
T Consensus 51 te~dEfiYHEmLvHpp----l~~h-~~pk~VLIiGGGDGg~~REvLkh~~---~v~mVeID~~Vv~~~k~~lP~~~~~~~ 122 (262)
T PRK00536 51 FKNFLHIESELLAHMG----GCTK-KELKEVLIVDGFDLELAHQLFKYDT---HVDFVQADEKILDSFISFFPHFHEVKN 122 (262)
T ss_pred ecchhhhHHHHHHHHH----HhhC-CCCCeEEEEcCCchHHHHHHHCcCC---eeEEEECCHHHHHHHHHHCHHHHHhhc
Confidence 4455566666555422 1233 6689999999999999999999973 677777776787777662 11
Q ss_pred ---cceeccccccCCCCCCccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 516 ---VGTYTNWCEAMSTYPRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 516 ---i~~~~~~~e~~~~yp~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
+.++ .+ ......++||+|-.+.+|+ +.....+.|.|+|||.++..
T Consensus 123 DpRv~l~-~~--~~~~~~~~fDVIIvDs~~~--------~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 123 NKNFTHA-KQ--LLDLDIKKYDLIICLQEPD--------IHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred CCCEEEe-eh--hhhccCCcCCEEEEcCCCC--------hHHHHHHHHhcCCCcEEEEC
Confidence 1111 11 0111237899999987655 45557789999999999995
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.045 Score=57.32 Aligned_cols=126 Identities=20% Similarity=0.276 Sum_probs=85.5
Q ss_pred CCceeEEeccCchhhHhhhh-hCCCeEEEEeccCccCcccH----HHHHHhcccce---eccccccCCCCC---Ccccee
Q 006905 468 GRYRNILDMNAHLGGFAAAL-IDFPVWVMNVVPAEAKINTL----GVIYERGLVGT---YTNWCEAMSTYP---RTYDLI 536 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l-~~~~v~~mnv~~~~~~~~~l----~~~~~rgli~~---~~~~~e~~~~yp---~t~Dli 536 (626)
++--.||||-||.|..---- .+.+--..+|.=.|-++..+ ..|.+|||-++ .+.-|-...+|- -..+|+
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 66778999999999753222 22222122455555554444 48999999443 333333333453 567899
Q ss_pred eeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh--HHHHHHHHHHHhC----CCeeEE
Q 006905 537 HADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV--DELVKVKRIIDAL----KWQSQI 593 (626)
Q Consensus 537 h~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~--~~~~~~~~~~~~l----~w~~~~ 593 (626)
-.+++|....+.-.+..-|.=+.++|.|||++|++-.. -.++.|...+.+. -|-.+.
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRr 276 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRR 276 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEe
Confidence 99999999998766777888999999999999999754 3567777777663 576663
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.044 Score=59.90 Aligned_cols=95 Identities=8% Similarity=0.070 Sum_probs=66.7
Q ss_pred CEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEcccccCC-CCCCCeeEEEecccc
Q 006905 213 RTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAERLP-YPSRAFDMAHCSRCL 285 (626)
Q Consensus 213 ~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~~Lp-f~d~sFDlV~~~~~l 285 (626)
.+|||+-||+|..+.+++.+ .|+++|+++.... ...+.++.+++. +.+...|+..+- .....||+|..-. +
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~-~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVE-SIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHH-HHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 47999999999999999875 3789999884443 333344444543 455555644332 2235799998744 2
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 286 IPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 286 ~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
. .+..++..+.+.+++||++.++.
T Consensus 124 ---G-s~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 ---G-TPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred ---C-CcHHHHHHHHHhcccCCEEEEEe
Confidence 2 23679999999999999999983
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.0074 Score=60.85 Aligned_cols=99 Identities=14% Similarity=0.244 Sum_probs=74.7
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh---cccceeccccccCCCCC-Cccceeeeccccc
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER---GLVGTYTNWCEAMSTYP-RTYDLIHADSVFS 543 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r---gli~~~~~~~e~~~~yp-~t~Dlih~~~~f~ 543 (626)
...-.++|+||+.|..+..|...+| -.++-+|.|-.|++-..+- +++-.+-.--|-|.+|- +++|||-++...
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~v--ekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlsl- 147 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGV--EKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSL- 147 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcch--hheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhh-
Confidence 3466799999999999999999985 4566678887888877665 45444433336677675 999999875443
Q ss_pred cCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 544 LYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 544 ~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
||.+ +++.-|....-+|||.|.||-+
T Consensus 148 HW~N--dLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 148 HWTN--DLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhhc--cCchHHHHHHHhcCCCccchhH
Confidence 4443 6688889999999999999875
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.019 Score=55.91 Aligned_cols=100 Identities=22% Similarity=0.290 Sum_probs=57.4
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHH---HHHHhcc------cc-eeccccccC--CCC-CCccc
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLG---VIYERGL------VG-TYTNWCEAM--STY-PRTYD 534 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~---~~~~rgl------i~-~~~~~~e~~--~~y-p~t~D 534 (626)
.+-++||++|||.|-.|.+++.. .....|+-+|.++ .++ .+.++.. +. ...+|.+.. ... ++.||
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~-~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKL-FGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred cCCceEEEECCccchhHHHHHhc-cCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 34678999999999555555444 0112566677664 544 3444321 22 334898754 112 37899
Q ss_pred eeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 535 LIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 535 lih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
+|.++.++-... ..+.++.=++++|.|+|.+++..
T Consensus 122 ~IlasDv~Y~~~---~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 122 VILASDVLYDEE---LFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp EEEEES--S-GG---GHHHHHHHHHHHBTT-TTEEEEE
T ss_pred EEEEecccchHH---HHHHHHHHHHHHhCCCCEEEEEe
Confidence 999987776533 45778888999999999988864
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.037 Score=57.28 Aligned_cols=71 Identities=8% Similarity=0.101 Sum_probs=50.6
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-cceeccccccCCCCC-Cccceeeeccccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-VGTYTNWCEAMSTYP-RTYDLIHADSVFS 543 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-i~~~~~~~e~~~~yp-~t~Dlih~~~~f~ 543 (626)
-.+|||+|||.|.++..|++++. .|+.+|.++.+++.+.++-- .+-+.-.+..+..++ ..||.|.++--|.
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~Vv~NlPy~ 102 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNKVVSNLPYQ 102 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceEEEEcCCcc
Confidence 47899999999999999999864 68889999889998877531 121222234455555 4589888865543
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.088 Score=56.79 Aligned_cols=101 Identities=14% Similarity=0.155 Sum_probs=63.4
Q ss_pred CCceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhcc-c---------ceec-cccccCCCCCCccce
Q 006905 468 GRYRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERGL-V---------GTYT-NWCEAMSTYPRTYDL 535 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rgl-i---------~~~~-~~~e~~~~yp~t~Dl 535 (626)
...++||-+|+|.|+.++.+++. ++ .+|+-+|..+.+++++.+.-- . .++. |=-+-+..-++.||+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~--~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDv 179 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTV--EKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDV 179 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCC--CeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccE
Confidence 34688999999999999988875 34 466777777789988876531 1 1111 100111112478999
Q ss_pred eeeccccccCC-CCCC---HHHHHH-HhhhhccCCcEEEEE
Q 006905 536 IHADSVFSLYK-DRCE---TEDILL-EMDRILRPEGGVIFR 571 (626)
Q Consensus 536 ih~~~~f~~~~-~~c~---~~~~l~-E~dRiLRPgG~~i~~ 571 (626)
|-++ ++.-.. .-+. -...+. .+.|.|+|||.+++.
T Consensus 180 Ii~D-~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 180 IIGD-LADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred EEec-CCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 9986 333111 0110 124555 789999999999874
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.03 Score=55.96 Aligned_cols=98 Identities=12% Similarity=0.072 Sum_probs=59.3
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceec-cccccCCCCCCccceeeeccccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYT-NWCEAMSTYPRTYDLIHADSVFS 543 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~-~~~e~~~~yp~t~Dlih~~~~f~ 543 (626)
.+|||+|||+|.++..++.++. -.|+.+|.++..+..+.+. |+ +.+++ |+.+.+......||+|-++-=|-
T Consensus 55 ~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~ 132 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFR 132 (199)
T ss_pred CEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCC
Confidence 3799999999999986555543 2678888887777755442 22 22333 22222211125799998855442
Q ss_pred cCCCCCCHHHHHHHhh--hhccCCcEEEEEcCh
Q 006905 544 LYKDRCETEDILLEMD--RILRPEGGVIFRDDV 574 (626)
Q Consensus 544 ~~~~~c~~~~~l~E~d--RiLRPgG~~i~~d~~ 574 (626)
. . ..+.++.-+. .+|+|+|.+++.-..
T Consensus 133 ~---g-~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 133 K---G-LLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred C---C-hHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 1 1 1234444443 468999999998544
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.042 Score=59.63 Aligned_cols=121 Identities=15% Similarity=0.115 Sum_probs=60.0
Q ss_pred CCCCCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCC-eEEEE
Q 006905 187 GTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVP-ALIGV 263 (626)
Q Consensus 187 gt~F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~-~~~~v 263 (626)
++.|..........+...+.........+||+-||+|.|+..|++. .|+++++.+..+.. +.+.|..+++. +.+..
T Consensus 172 ~sFfQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~-A~~Na~~N~i~n~~f~~ 250 (352)
T PF05958_consen 172 GSFFQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVED-ARENAKLNGIDNVEFIR 250 (352)
T ss_dssp TS---SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHH-HHHHHHHTT--SEEEEE
T ss_pred CcCccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHH-HHHHHHHcCCCcceEEE
Confidence 3445444443333333333322222237999999999999999996 78899887755543 33445555654 55655
Q ss_pred cccccCC----------------CCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 264 LAAERLP----------------YPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 264 ~d~~~Lp----------------f~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++++++. .....+|+|+.-...-... ..++..+. ++.=.+++|..
T Consensus 251 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~---~~~~~~~~---~~~~ivYvSCn 311 (352)
T PF05958_consen 251 GDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLD---EKVIELIK---KLKRIVYVSCN 311 (352)
T ss_dssp --SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SC---HHHHHHHH---HSSEEEEEES-
T ss_pred eeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCch---HHHHHHHh---cCCeEEEEECC
Confidence 5443321 1223689997754331211 33444443 34556667744
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.2 Score=51.21 Aligned_cols=131 Identities=18% Similarity=0.207 Sum_probs=83.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEE-EEcccccCC---CCCCCeeEEEecc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPALI-GVLAAERLP---YPSRAFDMAHCSR 283 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~~~-~v~d~~~Lp---f~d~sFDlV~~~~ 283 (626)
.++.+||||+-||.|+..|+++ .|.++|+.-..++. -.+....+.. ...++..+. +. +..|+|+|--
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~-----kLR~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~Dv 152 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHW-----KLRNDPRVIVLERTNVRYLTPEDFT-EKPDLIVIDV 152 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCH-----hHhcCCcEEEEecCChhhCCHHHcc-cCCCeEEEEe
Confidence 3679999999999999999997 68899986644443 2233332222 222233332 22 3678999977
Q ss_pred ccccccccHHHHHHHHHhcccCCeEEEEEeCCCCcccc----cccccchhhhhHHHHHHHHHHHHhhchhhh
Q 006905 284 CLIPWNQFGGIYLIEVDRVLRPGGYWILSGPPINWKKH----ARGWQRTKEDLNKEQTAIENVAKSLCWEKI 351 (626)
Q Consensus 284 ~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~pp~~w~~~----~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v 351 (626)
+++. ...+|..+..+|+|+|.++.-.-|..-..+ -.+-.+..+.......++++.++..+|...
T Consensus 153 SFIS----L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~ 220 (245)
T COG1189 153 SFIS----LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVK 220 (245)
T ss_pred ehhh----HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEe
Confidence 6633 477899999999999999987644321111 112334444445556678888888877554
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.059 Score=54.57 Aligned_cols=147 Identities=19% Similarity=0.215 Sum_probs=91.9
Q ss_pred HHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHH----hcc---cceec--ccc
Q 006905 454 LSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYE----RGL---VGTYT--NWC 523 (626)
Q Consensus 454 v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~----rgl---i~~~~--~~~ 523 (626)
...|..++-.+ ...++||.+|.+.|--|..|+.- +- ---++.+|..+++.++|.+ -|+ |-.+. |+-
T Consensus 47 ~g~~L~~L~~~---~~~k~iLEiGT~~GySal~mA~~l~~-~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal 122 (219)
T COG4122 47 TGALLRLLARL---SGPKRILEIGTAIGYSALWMALALPD-DGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDAL 122 (219)
T ss_pred HHHHHHHHHHh---cCCceEEEeecccCHHHHHHHhhCCC-CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHH
Confidence 34455544333 34788999999999777777542 10 1136777777777776543 344 23343 666
Q ss_pred ccCCC-CCCccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEE---------cC-----hHHHHHHHHHHHhCC
Q 006905 524 EAMST-YPRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFR---------DD-----VDELVKVKRIIDALK 588 (626)
Q Consensus 524 e~~~~-yp~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~---------d~-----~~~~~~~~~~~~~l~ 588 (626)
+.++. ...+||+|..+. ++-+.+..+.+.-+.|||||.+|+- ++ ......++....-+.
T Consensus 123 ~~l~~~~~~~fDliFIDa------dK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~ 196 (219)
T COG4122 123 DVLSRLLDGSFDLVFIDA------DKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLL 196 (219)
T ss_pred HHHHhccCCCccEEEEeC------ChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHh
Confidence 77774 679999988622 3446678999999999999999883 11 234555666666555
Q ss_pred CeeEEeecCCCCCCcceEEEEEec
Q 006905 589 WQSQIVDHEDGPLEREKLLFAVKL 612 (626)
Q Consensus 589 w~~~~~~~e~~~~~~e~~l~~~K~ 612 (626)
++-+. ++.--| ..+.++++.|.
T Consensus 197 ~~~~~-~t~~lP-~gDGl~v~~k~ 218 (219)
T COG4122 197 EDPRY-DTVLLP-LGDGLLLSRKR 218 (219)
T ss_pred hCcCc-eeEEEe-cCCceEEEeec
Confidence 54332 111112 23789999885
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.017 Score=60.29 Aligned_cols=65 Identities=14% Similarity=0.125 Sum_probs=47.0
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc---cceeccccccCCCCC-Cc--cceeeecc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL---VGTYTNWCEAMSTYP-RT--YDLIHADS 540 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl---i~~~~~~~e~~~~yp-~t--~Dlih~~~ 540 (626)
-.+|||+|||+|.++.+|++++. .|+.+|.++.+++.+.++.- +.+++ .++..++ .. +|.|.++-
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~~~v~~i~---~D~~~~~~~~~~~~~vv~Nl 113 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAEDNLTIIE---GDALKVDLSELQPLKVVANL 113 (272)
T ss_pred cCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhccCceEEEE---ChhhcCCHHHcCcceEEEeC
Confidence 45799999999999999999864 78999999999999877631 23333 3344443 22 57777753
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.011 Score=61.44 Aligned_cols=115 Identities=20% Similarity=0.268 Sum_probs=74.1
Q ss_pred chhhh-HHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceecc
Q 006905 443 FQQNS-ELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTN 521 (626)
Q Consensus 443 f~~d~-~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~ 521 (626)
|.++. ..|.+ |..... .... +. .++|+|||.| .++...+- .-+++-|.+..-++.+...|--.+.
T Consensus 25 fs~tr~~~Wp~-v~qfl~---~~~~-gs--v~~d~gCGng---ky~~~~p~--~~~ig~D~c~~l~~~ak~~~~~~~~-- 90 (293)
T KOG1331|consen 25 FSATRAAPWPM-VRQFLD---SQPT-GS--VGLDVGCGNG---KYLGVNPL--CLIIGCDLCTGLLGGAKRSGGDNVC-- 90 (293)
T ss_pred ccccccCccHH-HHHHHh---ccCC-cc--eeeecccCCc---ccCcCCCc--ceeeecchhhhhccccccCCCceee--
Confidence 55555 56664 333222 2333 33 4999999998 34444431 1456667765555555555531111
Q ss_pred ccccCC-CCC-CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 522 WCEAMS-TYP-RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 522 ~~e~~~-~yp-~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
.|.++. +++ .+||..-+..+.+|+..++....+|.|+-|+|||||...+.
T Consensus 91 ~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 91 RADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred hhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 122222 244 99999999999999999999999999999999999996653
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.0083 Score=57.54 Aligned_cols=102 Identities=19% Similarity=0.278 Sum_probs=58.7
Q ss_pred CCEEEEeCCCCchHHHHHhhCCcEEEeCCccchHHHHHHHHH---HcCC--CeE-EEEcc----cccCCCCCCCeeEEEe
Q 006905 212 IRTAIDTGCGVASWGAYLLSRNIITMSFAPRDTHEAQVQFAL---ERGV--PAL-IGVLA----AERLPYPSRAFDMAHC 281 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~~V~avdis~~dls~a~i~~A~---erg~--~~~-~~v~d----~~~Lpf~d~sFDlV~~ 281 (626)
++.||++|.|--.++..|....+..-++-..|.++..++..+ .++. ... ..++. ..+......+||+|+|
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 468999999976666666554222112211222333333222 2221 001 10110 1112233568999999
Q ss_pred ccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 282 SRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 282 ~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+.|+ -+.+....+++-|.+.|+|.|..++..|
T Consensus 110 ADCl-FfdE~h~sLvdtIk~lL~p~g~Al~fsP 141 (201)
T KOG3201|consen 110 ADCL-FFDEHHESLVDTIKSLLRPSGRALLFSP 141 (201)
T ss_pred ccch-hHHHHHHHHHHHHHHHhCcccceeEecC
Confidence 9998 4444447889999999999999888876
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.2 Score=53.96 Aligned_cols=89 Identities=17% Similarity=0.199 Sum_probs=65.7
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceeccccccCCCC--CCccceeeeccccccCCC
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTY--PRTYDLIHADSVFSLYKD 547 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~y--p~t~Dlih~~~~f~~~~~ 547 (626)
-.+|||+||..|||+-.|++++. .|+++|.. .+-+.+.+-+.+-.+.. ..|..- ++.+|+|.|+.+
T Consensus 212 g~~vlDLGAsPGGWT~~L~~rG~---~V~AVD~g-~l~~~L~~~~~V~h~~~--d~fr~~p~~~~vDwvVcDmv------ 279 (357)
T PRK11760 212 GMRAVDLGAAPGGWTYQLVRRGM---FVTAVDNG-PMAQSLMDTGQVEHLRA--DGFKFRPPRKNVDWLVCDMV------ 279 (357)
T ss_pred CCEEEEeCCCCcHHHHHHHHcCC---EEEEEech-hcCHhhhCCCCEEEEec--cCcccCCCCCCCCEEEEecc------
Confidence 45799999999999999999986 78999976 56666677775443332 333434 478999999544
Q ss_pred CCCHHHHHHHhhhhccCC--cEEEEE
Q 006905 548 RCETEDILLEMDRILRPE--GGVIFR 571 (626)
Q Consensus 548 ~c~~~~~l~E~dRiLRPg--G~~i~~ 571 (626)
|....++.=|-+.|..| ..+|+.
T Consensus 280 -e~P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 280 -EKPARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred -cCHHHHHHHHHHHHhcCcccEEEEE
Confidence 44556777788888877 577886
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.038 Score=55.45 Aligned_cols=100 Identities=22% Similarity=0.253 Sum_probs=62.5
Q ss_pred HHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-------cceeccccccC
Q 006905 454 LSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-------VGTYTNWCEAM 526 (626)
Q Consensus 454 v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-------i~~~~~~~e~~ 526 (626)
|..+..++. +.+ --.||++|||+|--||.|++..- .|+.++.. ..|.-...+.| +.+.| ....
T Consensus 61 vA~m~~~L~-~~~---g~~VLEIGtGsGY~aAvla~l~~---~V~siEr~-~~L~~~A~~~L~~lg~~nV~v~~--gDG~ 130 (209)
T COG2518 61 VARMLQLLE-LKP---GDRVLEIGTGSGYQAAVLARLVG---RVVSIERI-EELAEQARRNLETLGYENVTVRH--GDGS 130 (209)
T ss_pred HHHHHHHhC-CCC---CCeEEEECCCchHHHHHHHHHhC---eEEEEEEc-HHHHHHHHHHHHHcCCCceEEEE--CCcc
Confidence 555555443 444 47899999999988888877632 66777766 44443333333 23333 1333
Q ss_pred CCCC--CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 527 STYP--RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 527 ~~yp--~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
.-|| .-||.|+........ +..|+ +-|+|||.+|+=.
T Consensus 131 ~G~~~~aPyD~I~Vtaaa~~v------P~~Ll---~QL~~gGrlv~Pv 169 (209)
T COG2518 131 KGWPEEAPYDRIIVTAAAPEV------PEALL---DQLKPGGRLVIPV 169 (209)
T ss_pred cCCCCCCCcCEEEEeeccCCC------CHHHH---HhcccCCEEEEEE
Confidence 4477 899999985554433 33343 4699999999853
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.039 Score=58.12 Aligned_cols=102 Identities=13% Similarity=0.084 Sum_probs=62.2
Q ss_pred CCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC---CeEEEEccccc-CC--CCCCCeeEEEec
Q 006905 212 IRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV---PALIGVLAAER-LP--YPSRAFDMAHCS 282 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~---~~~~~v~d~~~-Lp--f~d~sFDlV~~~ 282 (626)
+++|||+=|=||.|+.+.+.. .|+.||.+...+..+..+++. +++ ...+...|+.. +. -..+.||+|++-
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~l-Ng~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD 202 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAAL-NGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD 202 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHH-TT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence 459999999999999987775 467777766555544444333 343 35666666432 22 124689999983
Q ss_pred cccc-----cccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 283 RCLI-----PWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 283 ~~l~-----h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
..-. ....+...++..+.++|+|||.+++...
T Consensus 203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 2210 1112225688899999999999988753
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.068 Score=56.37 Aligned_cols=79 Identities=20% Similarity=0.326 Sum_probs=51.9
Q ss_pred CCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCCCcccccccccchhhhhHHHHHHHHHHHHhhchhhhcc
Q 006905 274 RAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPPINWKKHARGWQRTKEDLNKEQTAIENVAKSLCWEKIKE 353 (626)
Q Consensus 274 ~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~pp~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v~~ 353 (626)
++||+|+..+.+ .-..+.-.++..|..+|||||+++=.+|-.+......+- +....+.-..+.+..+++.++|+.+.+
T Consensus 258 ~~~d~VvTcfFI-DTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~-~~~~siEls~edl~~v~~~~GF~~~ke 335 (369)
T KOG2798|consen 258 GSYDVVVTCFFI-DTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGV-ENEMSIELSLEDLKRVASHRGFEVEKE 335 (369)
T ss_pred CccceEEEEEEe-echHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCC-cccccccccHHHHHHHHHhcCcEEEEe
Confidence 469999876533 444444689999999999999999888744322211111 112223334566778889999988776
Q ss_pred c
Q 006905 354 K 354 (626)
Q Consensus 354 ~ 354 (626)
.
T Consensus 336 ~ 336 (369)
T KOG2798|consen 336 R 336 (369)
T ss_pred e
Confidence 5
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.026 Score=59.55 Aligned_cols=122 Identities=16% Similarity=0.216 Sum_probs=79.7
Q ss_pred hchhhhHHHHHHHHHHHHhhhhcCCCCCceeEEeccCchh----hHhhhhhCC-Ce--EEEEeccCccCcccHHHHHHhc
Q 006905 442 IFQQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLG----GFAAALIDF-PV--WVMNVVPAEAKINTLGVIYERG 514 (626)
Q Consensus 442 ~f~~d~~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G----~faa~l~~~-~v--~~mnv~~~~~~~~~l~~~~~rg 514 (626)
.|--|...|..-.+.. .. .. + .-.|...||.+| +.|..|.+. +. +-..|+++|.+.+.|+.|.+ |
T Consensus 95 ~FFRd~~~f~~L~~~~---~~--~~-~-~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~-G 166 (287)
T PRK10611 95 AFFREAHHFPILAEHA---RR--RS-G-EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARS-G 166 (287)
T ss_pred CccCCcHHHHHHHHHH---Hh--cC-C-CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHh-C
Confidence 3666666666533321 11 11 2 357999999999 455555553 11 23479999999888876543 2
Q ss_pred ccc---------------------------------------eeccccccCCCCC--CccceeeeccccccCCCCCCHHH
Q 006905 515 LVG---------------------------------------TYTNWCEAMSTYP--RTYDLIHADSVFSLYKDRCETED 553 (626)
Q Consensus 515 li~---------------------------------------~~~~~~e~~~~yp--~t~Dlih~~~~f~~~~~~c~~~~ 553 (626)
..+ ..|+..+ ..|| ..||+|.|..+|.+... -....
T Consensus 167 ~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~--~~~~~~~~fD~I~cRNvliyF~~-~~~~~ 243 (287)
T PRK10611 167 IYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLA--KQWAVPGPFDAIFCRNVMIYFDK-TTQER 243 (287)
T ss_pred CCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCC--CCCccCCCcceeeHhhHHhcCCH-HHHHH
Confidence 110 1222222 1244 89999999999987754 35578
Q ss_pred HHHHhhhhccCCcEEEEEcCh
Q 006905 554 ILLEMDRILRPEGGVIFRDDV 574 (626)
Q Consensus 554 ~l~E~dRiLRPgG~~i~~d~~ 574 (626)
++..+.+.|+|||++++....
T Consensus 244 vl~~l~~~L~pgG~L~lG~sE 264 (287)
T PRK10611 244 ILRRFVPLLKPDGLLFAGHSE 264 (287)
T ss_pred HHHHHHHHhCCCcEEEEeCcc
Confidence 999999999999999887544
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.063 Score=60.41 Aligned_cols=96 Identities=20% Similarity=0.360 Sum_probs=59.9
Q ss_pred eeEEeccCchhhHhhhhhCC----CeEEEEeccCccCcccHHHH---HHh-ccc--ceec-cccccC-CCCCCccceee-
Q 006905 471 RNILDMNAHLGGFAAALIDF----PVWVMNVVPAEAKINTLGVI---YER-GLV--GTYT-NWCEAM-STYPRTYDLIH- 537 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~----~v~~mnv~~~~~~~~~l~~~---~~r-gli--~~~~-~~~e~~-~~yp~t~Dlih- 537 (626)
..||||.||.||=+.+|++. + .|+..|.+..-+... ++| |+- -+.+ |- ..+ ..+|..||.|.
T Consensus 115 ~~VLD~CAAPGgKTt~la~~l~~~g----~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~-~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 115 QRVLDMAAAPGSKTTQIAALMNNQG----AIVANEYSASRVKVLHANISRCGVSNVALTHFDG-RVFGAALPETFDAILL 189 (470)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCC----EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCch-hhhhhhchhhcCeEEE
Confidence 47999999999988887653 4 377777776655544 344 431 1222 11 112 23568899998
Q ss_pred ---eccccccCCC-----CCC---H-------HHHHHHhhhhccCCcEEEEE
Q 006905 538 ---ADSVFSLYKD-----RCE---T-------EDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 538 ---~~~~f~~~~~-----~c~---~-------~~~l~E~dRiLRPgG~~i~~ 571 (626)
|++.=..-++ +-. + ..+|...-+.|||||++|.+
T Consensus 190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYS 241 (470)
T PRK11933 190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYS 241 (470)
T ss_pred cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 5543221111 001 1 24888899999999999997
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.17 Score=51.19 Aligned_cols=97 Identities=18% Similarity=0.206 Sum_probs=66.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCC--C--CCCCeeEEEe
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLP--Y--PSRAFDMAHC 281 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lp--f--~d~sFDlV~~ 281 (626)
++.+||-+|+++|+...++.+- .|.++++++. .-...++.|.+|. ++.-...|+. .| | --+..|+|++
T Consensus 73 ~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r-~~rdL~~la~~R~-NIiPIl~DAr-~P~~Y~~lv~~VDvI~~ 149 (229)
T PF01269_consen 73 PGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPR-SMRDLLNLAKKRP-NIIPILEDAR-HPEKYRMLVEMVDVIFQ 149 (229)
T ss_dssp TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHH-HHHHHHHHHHHST-TEEEEES-TT-SGGGGTTTS--EEEEEE
T ss_pred CCCEEEEecccCCCccchhhhccCCCCcEEEEEecch-hHHHHHHHhccCC-ceeeeeccCC-ChHHhhcccccccEEEe
Confidence 3569999999999888877763 5789999994 4456777887774 3333344443 33 1 1347999998
Q ss_pred ccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 282 SRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 282 ~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
--+ -+++...++.++...||+||+++++.
T Consensus 150 DVa---Qp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 150 DVA---QPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp E-S---STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCC---ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 553 23333678888999999999999974
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.1 Score=52.36 Aligned_cols=108 Identities=15% Similarity=0.176 Sum_probs=65.5
Q ss_pred HHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC----CeEEEEccc-c
Q 006905 196 AYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV----PALIGVLAA-E 267 (626)
Q Consensus 196 ~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~----~~~~~v~d~-~ 267 (626)
.+...+++.+. ..+++||.||-|-|.....+.++ .-..++-.| + ..+..+..|- ++....+-- .
T Consensus 89 piMha~A~ai~---tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp-~----V~krmr~~gw~ek~nViil~g~WeD 160 (271)
T KOG1709|consen 89 PIMHALAEAIS---TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHP-D----VLKRMRDWGWREKENVIILEGRWED 160 (271)
T ss_pred HHHHHHHHHHh---hCCceEEEeccchHHHHHHHhhcCCcceEEEecCH-H----HHHHHHhcccccccceEEEecchHh
Confidence 45555555554 23568999999999888888776 334445444 3 3333333331 222222221 1
Q ss_pred cCC-CCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEE
Q 006905 268 RLP-YPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 268 ~Lp-f~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
.++ ++|+.||-|+----- ..-++...+..-+.|+|||+|.|-+-
T Consensus 161 vl~~L~d~~FDGI~yDTy~-e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 161 VLNTLPDKHFDGIYYDTYS-ELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred hhccccccCcceeEeechh-hHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 223 568899999864322 23334567888999999999998663
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.21 Score=50.96 Aligned_cols=116 Identities=21% Similarity=0.255 Sum_probs=82.7
Q ss_pred CceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-cceeccccccCCCCC----Cccceeeeccccc
Q 006905 469 RYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-VGTYTNWCEAMSTYP----RTYDLIHADSVFS 543 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-i~~~~~~~e~~~~yp----~t~Dlih~~~~f~ 543 (626)
.-+++||+|+-+|||.-.|+++++- -|.++|-..++|.--+.... +-++-. +....--| .-.|++.|+-.|-
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~gAk--~VyavDVG~~Ql~~kLR~d~rV~~~E~-tN~r~l~~~~~~~~~d~~v~DvSFI 155 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRGAK--HVYAVDVGYGQLHWKLRNDPRVIVLER-TNVRYLTPEDFTEKPDLIVIDVSFI 155 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcCCc--EEEEEEccCCccCHhHhcCCcEEEEec-CChhhCCHHHcccCCCeEEEEeehh
Confidence 3577999999999999999999773 57788877777775555554 111110 00111112 3567999977776
Q ss_pred cCCCCCCHHHHHHHhhhhccCCcEEEEE-------------------cC---hHHHHHHHHHHHhCCCeeEE
Q 006905 544 LYKDRCETEDILLEMDRILRPEGGVIFR-------------------DD---VDELVKVKRIIDALKWQSQI 593 (626)
Q Consensus 544 ~~~~~c~~~~~l~E~dRiLRPgG~~i~~-------------------d~---~~~~~~~~~~~~~l~w~~~~ 593 (626)
. +..+|-.+..+|.|+|-++.. |+ ..++.++.+.++.+.|.+.-
T Consensus 156 S------L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~g 221 (245)
T COG1189 156 S------LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKG 221 (245)
T ss_pred h------HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEee
Confidence 3 456899999999999988874 32 35688999999999999873
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.33 Score=49.08 Aligned_cols=152 Identities=21% Similarity=0.211 Sum_probs=89.5
Q ss_pred chhhhHHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhh--hCCCeEEEEeccCccCc---ccHH-HHHHhcc-
Q 006905 443 FQQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAAL--IDFPVWVMNVVPAEAKI---NTLG-VIYERGL- 515 (626)
Q Consensus 443 f~~d~~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l--~~~~v~~mnv~~~~~~~---~~l~-~~~~rgl- 515 (626)
..+..+.|.+|+-.-..+...+.. . -.+++|+|+|-|-=|-=| +.... +|+-+|.-. +.|+ ++.|=||
T Consensus 43 ~~~~~e~~~rHilDSl~~~~~~~~-~-~~~~~DIGSGaGfPGipLAI~~p~~---~vtLles~~Kk~~FL~~~~~eL~L~ 117 (215)
T COG0357 43 IRDPEELWQRHILDSLVLLPYLDG-K-AKRVLDIGSGAGFPGIPLAIAFPDL---KVTLLESLGKKIAFLREVKKELGLE 117 (215)
T ss_pred CCCHHHHHHHHHHHHhhhhhcccc-c-CCEEEEeCCCCCCchhhHHHhccCC---cEEEEccCchHHHHHHHHHHHhCCC
Confidence 344578999998755554443322 1 478999999988544433 33333 344444321 2333 3344455
Q ss_pred -cceeccccccCCCCC--Cc-cceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEE---EcChHHHHHHHHHHHhCC
Q 006905 516 -VGTYTNWCEAMSTYP--RT-YDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIF---RDDVDELVKVKRIIDALK 588 (626)
Q Consensus 516 -i~~~~~~~e~~~~yp--~t-~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~---~d~~~~~~~~~~~~~~l~ 588 (626)
+.++| .+..+|. .. ||+|-| .+-+++..++.=.-..||+||.++. .-..+.+..+++....+.
T Consensus 118 nv~i~~---~RaE~~~~~~~~~D~vts-------RAva~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~ 187 (215)
T COG0357 118 NVEIVH---GRAEEFGQEKKQYDVVTS-------RAVASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLG 187 (215)
T ss_pred CeEEeh---hhHhhcccccccCcEEEe-------ehccchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhc
Confidence 34555 4555554 23 999998 2334555555555799999999753 445567888888888888
Q ss_pred CeeEEeecCCCCC-CcceEEEE
Q 006905 589 WQSQIVDHEDGPL-EREKLLFA 609 (626)
Q Consensus 589 w~~~~~~~e~~~~-~~e~~l~~ 609 (626)
+....+..-.-|. ..++.|+.
T Consensus 188 ~~~~~~~~~~~p~~~~~r~l~i 209 (215)
T COG0357 188 GQVEKVFSLTVPELDGERHLVI 209 (215)
T ss_pred CcEEEEEEeecCCCCCceEEEE
Confidence 8887554333332 23444443
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.18 Score=55.15 Aligned_cols=109 Identities=10% Similarity=0.102 Sum_probs=69.4
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc----c--cceeccccccCCC-CCCccceeeeccccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG----L--VGTYTNWCEAMST-YPRTYDLIHADSVFS 543 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg----l--i~~~~~~~e~~~~-yp~t~Dlih~~~~f~ 543 (626)
++|||++||+|.|+..|+.++. .|+.+|.++..++.+.+.- + +..+..=.+.+.. .-..||+|..+==
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~~---~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPP-- 309 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPDT---QLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPP-- 309 (374)
T ss_pred CEEEEccCCccHHHHHHhhcCC---eEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCC--
Confidence 5799999999999999998754 7899999988988777643 2 1222211111111 1145898877422
Q ss_pred cCCCCCCH-HHHHHHhhhhccCCcEEEEEcChH-HHHHHHHHHHhCCCeeE
Q 006905 544 LYKDRCET-EDILLEMDRILRPEGGVIFRDDVD-ELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 544 ~~~~~c~~-~~~l~E~dRiLRPgG~~i~~d~~~-~~~~~~~~~~~l~w~~~ 592 (626)
|..+ +.++..+. -++|++.++++-... ....++.+ -.|+++
T Consensus 310 ----r~G~~~~~l~~l~-~~~p~~ivyvsc~p~TlaRDl~~L---~gy~l~ 352 (374)
T TIGR02085 310 ----RRGIGKELCDYLS-QMAPKFILYSSCNAQTMAKDIAEL---SGYQIE 352 (374)
T ss_pred ----CCCCcHHHHHHHH-hcCCCeEEEEEeCHHHHHHHHHHh---cCceEE
Confidence 2222 44544454 379999999986654 45555555 247665
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.44 Score=49.61 Aligned_cols=106 Identities=17% Similarity=0.190 Sum_probs=66.7
Q ss_pred HHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEcccccCC
Q 006905 198 IDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAERLP 270 (626)
Q Consensus 198 i~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~Lp 270 (626)
+..|..+|...+|. +||+-|.|+|++..+++.. .+...|+.. +..+.+.+.-++.+++ +.+..-|....-
T Consensus 94 ia~I~~~L~i~PGs--vV~EsGTGSGSlShaiaraV~ptGhl~tfefH~-~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~G 170 (314)
T KOG2915|consen 94 IAMILSMLEIRPGS--VVLESGTGSGSLSHAIARAVAPTGHLYTFEFHE-TRAEKALEEFREHGIGDNVTVTHRDVCGSG 170 (314)
T ss_pred HHHHHHHhcCCCCC--EEEecCCCcchHHHHHHHhhCcCcceEEEEecH-HHHHHHHHHHHHhCCCcceEEEEeecccCC
Confidence 34567777766655 9999999999999888875 577777744 2222222223344543 455555655554
Q ss_pred CC--CCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEE
Q 006905 271 YP--SRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 271 f~--d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
|. +..+|.|+.-..- + -.++--++.+||-+|.-+.+
T Consensus 171 F~~ks~~aDaVFLDlPa-P-----w~AiPha~~~lk~~g~r~cs 208 (314)
T KOG2915|consen 171 FLIKSLKADAVFLDLPA-P-----WEAIPHAAKILKDEGGRLCS 208 (314)
T ss_pred ccccccccceEEEcCCC-h-----hhhhhhhHHHhhhcCceEEe
Confidence 43 6789999874422 3 44555566688887754444
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.042 Score=56.58 Aligned_cols=66 Identities=9% Similarity=0.084 Sum_probs=46.7
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc----cceeccccccCCCCC-Cccc---eeeec
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL----VGTYTNWCEAMSTYP-RTYD---LIHAD 539 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl----i~~~~~~~e~~~~yp-~t~D---lih~~ 539 (626)
..-.+|||+|||.|.+++.|+++.- .|+.+|.++.+++.+.++-- +.+++ .++..+| ..|| +|.++
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~~~~v~v~~---~D~~~~~~~~~d~~~~vvsN 101 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSLYERLEVIE---GDALKVDLPDFPKQLKVVSN 101 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCcCCcEEEEE---CchhcCChhHcCCcceEEEc
Confidence 3457899999999999999998864 48888888889888776521 22333 3445555 4577 66664
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.16 Score=54.84 Aligned_cols=116 Identities=12% Similarity=0.055 Sum_probs=79.4
Q ss_pred CCCCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCC--eEEE
Q 006905 188 TMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVP--ALIG 262 (626)
Q Consensus 188 t~F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~--~~~~ 262 (626)
.+|..+-..=-.++.++.. . +.+|||+=+|.|.|+..++.. .|.++|+.|.... ...+.++.+++. +...
T Consensus 169 v~Fsprl~~ER~Rva~~v~--~--GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~-~L~eNi~LN~v~~~v~~i 243 (341)
T COG2520 169 VYFSPRLSTERARVAELVK--E--GETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVE-YLKENIRLNKVEGRVEPI 243 (341)
T ss_pred eEECCCchHHHHHHHhhhc--C--CCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHH-HHHHHHHhcCccceeeEE
Confidence 4455544433334555442 2 459999999999999988886 3888999884333 344444455554 4456
Q ss_pred EcccccCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 263 VLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 263 v~d~~~Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
.+|....+...+.||-|+.+..- ....++....+.|++||.+.+-.
T Consensus 244 ~gD~rev~~~~~~aDrIim~~p~-----~a~~fl~~A~~~~k~~g~iHyy~ 289 (341)
T COG2520 244 LGDAREVAPELGVADRIIMGLPK-----SAHEFLPLALELLKDGGIIHYYE 289 (341)
T ss_pred eccHHHhhhccccCCEEEeCCCC-----cchhhHHHHHHHhhcCcEEEEEe
Confidence 77877776555889999986632 33678888999999999998854
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.039 Score=58.04 Aligned_cols=106 Identities=19% Similarity=0.219 Sum_probs=66.4
Q ss_pred CCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEE-cccccC-C-CCCCCeeEE
Q 006905 208 NDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVPALIGV-LAAERL-P-YPSRAFDMA 279 (626)
Q Consensus 208 ~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~~~~~v-~d~~~L-p-f~d~sFDlV 279 (626)
.+.++..|||+.+|.|.=+.++++. .+++.|+++.-+. ...+.+.+.|+...... .|.... + .....||.|
T Consensus 82 ~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~-~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~V 160 (283)
T PF01189_consen 82 DPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLK-RLKENLKRLGVFNVIVINADARKLDPKKPESKFDRV 160 (283)
T ss_dssp TTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHH-HHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEE
T ss_pred cccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHH-HHHHHHHhcCCceEEEEeeccccccccccccccchh
Confidence 3444668999999999777776664 5888999774333 33344455566544333 454443 2 233469999
Q ss_pred Ee----ccc--ccccc---------------ccHHHHHHHHHhcc----cCCeEEEEEeC
Q 006905 280 HC----SRC--LIPWN---------------QFGGIYLIEVDRVL----RPGGYWILSGP 314 (626)
Q Consensus 280 ~~----~~~--l~h~~---------------~~~~~~L~Ei~RvL----KPGG~lvis~p 314 (626)
+. +.. +..-+ .-+..+|..+.+.| ||||+++.++-
T Consensus 161 lvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 161 LVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp EEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred hcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 95 222 11100 00126899999999 99999999863
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.13 Score=55.12 Aligned_cols=100 Identities=15% Similarity=0.163 Sum_probs=73.0
Q ss_pred CceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceeccccccCCCCCCccceeeeccccccCCCC
Q 006905 469 RYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYPRTYDLIHADSVFSLYKDR 548 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~yp~t~Dlih~~~~f~~~~~~ 548 (626)
.+...+|+|+|.|.....+..+--+ +-.+..|.+ -.++.+-.-+ .|+-|--|..|-+-| .=|+|...+++++|.+.
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~fp~-ik~infdlp-~v~~~a~~~~-~gV~~v~gdmfq~~P-~~daI~mkWiLhdwtDe 252 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKYPH-IKGINFDLP-FVLAAAPYLA-PGVEHVAGDMFQDTP-KGDAIWMKWILHDWTDE 252 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhCCC-CceeecCHH-HHHhhhhhhc-CCcceecccccccCC-CcCeEEEEeecccCChH
Confidence 5888999999999999998774111 233333443 2233332222 456666678888877 33599999999999985
Q ss_pred CCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 549 CETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 549 c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
+...+|.-.-.-|+|||.+|+-|.
T Consensus 253 -dcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 253 -DCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred -HHHHHHHHHHHhCCCCCEEEEEec
Confidence 778899999999999999999765
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.48 Score=48.24 Aligned_cols=39 Identities=18% Similarity=0.003 Sum_probs=26.7
Q ss_pred eEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh
Q 006905 472 NILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER 513 (626)
Q Consensus 472 ~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r 513 (626)
.|||-=||+|+.+.+-.+.+. |...++.++.-.+++.+|
T Consensus 166 ~vlDpf~Gsgtt~~aa~~~~r---~~~g~e~~~~y~~~~~~r 204 (227)
T PRK13699 166 IVLDPFAGSGSTCVAALQSGR---RYIGIELLEQYHRAGQQR 204 (227)
T ss_pred EEEeCCCCCCHHHHHHHHcCC---CEEEEecCHHHHHHHHHH
Confidence 599998888887766655544 455666666666666555
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.15 Score=52.61 Aligned_cols=114 Identities=16% Similarity=0.263 Sum_probs=69.1
Q ss_pred hcCCCCCceeEEeccCchhhHhhhhhC----CCeEEEEeccCccCcccHHHHHH----hcc---cceec-cccc-cCC-C
Q 006905 463 QLGQSGRYRNILDMNAHLGGFAAALID----FPVWVMNVVPAEAKINTLGVIYE----RGL---VGTYT-NWCE-AMS-T 528 (626)
Q Consensus 463 ~~~~~~~~r~vlD~g~g~G~faa~l~~----~~v~~mnv~~~~~~~~~l~~~~~----rgl---i~~~~-~~~e-~~~-~ 528 (626)
.|.+ | -.||+.|.|.|+++.+|+. .|- |.-.+.++...+.|.+ .|+ +.+.| |.|+ .|. .
T Consensus 37 ~i~p-G--~~VlEaGtGSG~lt~~l~r~v~p~G~----v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~ 109 (247)
T PF08704_consen 37 DIRP-G--SRVLEAGTGSGSLTHALARAVGPTGH----VYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE 109 (247)
T ss_dssp T--T-T---EEEEE--TTSHHHHHHHHHHTTTSE----EEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT
T ss_pred CCCC-C--CEEEEecCCcHHHHHHHHHHhCCCeE----EEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc
Confidence 3666 4 4599999999999999974 342 4444555555554433 344 44555 7774 452 2
Q ss_pred CCCccceeeeccccccCCCCCCHHHHHHHhhhhc-cCCcEEEE-EcChHHHHHHHHHHHhCCCee
Q 006905 529 YPRTYDLIHADSVFSLYKDRCETEDILLEMDRIL-RPEGGVIF-RDDVDELVKVKRIIDALKWQS 591 (626)
Q Consensus 529 yp~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiL-RPgG~~i~-~d~~~~~~~~~~~~~~l~w~~ 591 (626)
....+|.|.. .+. +.-.++--+.++| ||||.+.+ +-..+.+.++-.-++...|.-
T Consensus 110 ~~~~~DavfL-----Dlp---~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~ 166 (247)
T PF08704_consen 110 LESDFDAVFL-----DLP---DPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTD 166 (247)
T ss_dssp -TTSEEEEEE-----ESS---SGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEE
T ss_pred ccCcccEEEE-----eCC---CHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCee
Confidence 3467887665 332 2234888899999 99999876 566677677766677777754
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.075 Score=56.29 Aligned_cols=44 Identities=16% Similarity=0.270 Sum_probs=31.0
Q ss_pred HHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccch
Q 006905 199 DDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDT 244 (626)
Q Consensus 199 ~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dl 244 (626)
+.+.+.+...+ +..+||.+||.|.++..+++. .|+++|.++..+
T Consensus 9 ~Evl~~L~~~p--g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al 57 (296)
T PRK00050 9 DEVVDALAIKP--DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAI 57 (296)
T ss_pred HHHHHhhCCCC--CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHH
Confidence 34444444333 458999999999999999886 377777766433
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.16 Score=55.58 Aligned_cols=78 Identities=19% Similarity=0.248 Sum_probs=45.0
Q ss_pred CCEEEEeCCCCchHHHHHhhC-------------------CcEEEeCCccchHHHHHHHHHH-------------cCCCe
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-------------------NIITMSFAPRDTHEAQVQFALE-------------RGVPA 259 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-------------------~V~avdis~~dls~a~i~~A~e-------------rg~~~ 259 (626)
..+|+|+|||+|..+..+... .+..-|+-..|.+.-...+... .+...
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 457999999999665444221 2444566556665544443211 11111
Q ss_pred EEEEc--c-cccCCCCCCCeeEEEeccccccccc
Q 006905 260 LIGVL--A-AERLPYPSRAFDMAHCSRCLIPWNQ 290 (626)
Q Consensus 260 ~~~v~--d-~~~Lpf~d~sFDlV~~~~~l~h~~~ 290 (626)
.+..+ . ...--||+++.+++|++.++ ||..
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~sl-HWLS 176 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSL-HWLS 176 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccc-eecc
Confidence 22211 1 22233789999999999999 7754
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.22 Score=51.62 Aligned_cols=101 Identities=15% Similarity=0.093 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHH---cCCCeEEEEccccc
Q 006905 194 ADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALE---RGVPALIGVLAAER 268 (626)
Q Consensus 194 a~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~e---rg~~~~~~v~d~~~ 268 (626)
....++.|.+.+.... ...|||||.|.|.++..|++. .+++++.++. ..+...+ ....+.+...|...
T Consensus 15 ~~~~~~~Iv~~~~~~~--~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~-----~~~~L~~~~~~~~~~~vi~~D~l~ 87 (262)
T PF00398_consen 15 DPNIADKIVDALDLSE--GDTVLEIGPGPGALTRELLKRGKRVIAVEIDPD-----LAKHLKERFASNPNVEVINGDFLK 87 (262)
T ss_dssp HHHHHHHHHHHHTCGT--TSEEEEESSTTSCCHHHHHHHSSEEEEEESSHH-----HHHHHHHHCTTCSSEEEEES-TTT
T ss_pred CHHHHHHHHHhcCCCC--CCEEEEeCCCCccchhhHhcccCcceeecCcHh-----HHHHHHHHhhhcccceeeecchhc
Confidence 3556677777776553 558999999999999999886 6888988662 3333333 23456777788777
Q ss_pred CCCCC---CCeeEEEeccccccccccHHHHHHHHHhcccC
Q 006905 269 LPYPS---RAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRP 305 (626)
Q Consensus 269 Lpf~d---~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKP 305 (626)
+..+. +.-..|+++.. +.- ...++..+...-+.
T Consensus 88 ~~~~~~~~~~~~~vv~NlP---y~i-s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 88 WDLYDLLKNQPLLVVGNLP---YNI-SSPILRKLLELYRF 123 (262)
T ss_dssp SCGGGHCSSSEEEEEEEET---GTG-HHHHHHHHHHHGGG
T ss_pred cccHHhhcCCceEEEEEec---ccc-hHHHHHHHhhcccc
Confidence 77554 45667777653 321 25566666664344
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.24 Score=52.49 Aligned_cols=94 Identities=15% Similarity=0.247 Sum_probs=47.7
Q ss_pred cHHHHHHHHHHhhccCCCC---CCEEEEeCCCCchHHHHHh----hCCcEEEeCCccchHHHHHHHHHHcCCC--eEEEE
Q 006905 193 GADAYIDDIGKLINLNDGS---IRTAIDTGCGVASWGAYLL----SRNIITMSFAPRDTHEAQVQFALERGVP--ALIGV 263 (626)
Q Consensus 193 ga~~yi~~L~~ll~l~~~~---~~~VLDIGCGtG~~a~~La----~~~V~avdis~~dls~a~i~~A~erg~~--~~~~v 263 (626)
+.-.|+..|.++|...... ..++||||+|...+-..|. .-.++++|+++..+..++.......++. +.+..
T Consensus 81 ~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~ 160 (299)
T PF05971_consen 81 NRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRK 160 (299)
T ss_dssp HHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE
T ss_pred hhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEE
Confidence 4567888888888744322 4589999999884433333 3388999998876666555554432433 33332
Q ss_pred cc-ccc----CCCCCCCeeEEEeccccc
Q 006905 264 LA-AER----LPYPSRAFDMAHCSRCLI 286 (626)
Q Consensus 264 ~d-~~~----Lpf~d~sFDlV~~~~~l~ 286 (626)
.. ... +-.++..||+.+|+.-++
T Consensus 161 ~~~~~~i~~~i~~~~e~~dftmCNPPFy 188 (299)
T PF05971_consen 161 QKNPDNIFDGIIQPNERFDFTMCNPPFY 188 (299)
T ss_dssp --ST-SSTTTSTT--S-EEEEEE-----
T ss_pred cCCccccchhhhcccceeeEEecCCccc
Confidence 22 111 112346899999999663
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.22 Score=52.02 Aligned_cols=130 Identities=18% Similarity=0.271 Sum_probs=83.8
Q ss_pred chhhhHHHHHHHHHHHHhhhhcCCCCCceeEEeccCchh----hHhhhhhCCCe----EEEEeccCccCcccHHHHH---
Q 006905 443 FQQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLG----GFAAALIDFPV----WVMNVVPAEAKINTLGVIY--- 511 (626)
Q Consensus 443 f~~d~~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G----~faa~l~~~~v----~~mnv~~~~~~~~~l~~~~--- 511 (626)
|--|..+|..--++-...+-.-.. ++.-+|.-+||++| +.|-.|.+... +.+.|.++|.+...|+.|.
T Consensus 71 FFR~~~~f~~l~~~v~p~l~~~~~-~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~ 149 (268)
T COG1352 71 FFRDPEHFEELRDEVLPELVKRKK-GRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGI 149 (268)
T ss_pred hccCcHHHHHHHHHHHHHHHhhcc-CCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCC
Confidence 555666666433221111111112 24667999999999 56666666532 5679999999977777442
Q ss_pred -H-----hcccc---------------------------eeccccccCCCCCCccceeeeccccccCCCCCCHHHHHHHh
Q 006905 512 -E-----RGLVG---------------------------TYTNWCEAMSTYPRTYDLIHADSVFSLYKDRCETEDILLEM 558 (626)
Q Consensus 512 -~-----rgli~---------------------------~~~~~~e~~~~yp~t~Dlih~~~~f~~~~~~c~~~~~l~E~ 558 (626)
. +|+.. -+|+.-+.-. +++-||+|-|-.|+-+.... .-..++..+
T Consensus 150 Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCRNVLIYFd~~-~q~~il~~f 227 (268)
T COG1352 150 YPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFCRNVLIYFDEE-TQERILRRF 227 (268)
T ss_pred CChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc-ccCCCCEEEEcceEEeeCHH-HHHHHHHHH
Confidence 1 34311 1232222222 66889999999998876532 346799999
Q ss_pred hhhccCCcEEEEEcChH
Q 006905 559 DRILRPEGGVIFRDDVD 575 (626)
Q Consensus 559 dRiLRPgG~~i~~d~~~ 575 (626)
...|+|||++++-.+..
T Consensus 228 ~~~L~~gG~LflG~sE~ 244 (268)
T COG1352 228 ADSLKPGGLLFLGHSET 244 (268)
T ss_pred HHHhCCCCEEEEccCcc
Confidence 99999999999976554
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.1 Score=53.36 Aligned_cols=103 Identities=10% Similarity=0.106 Sum_probs=62.2
Q ss_pred CceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-----cc-ee----c------------------
Q 006905 469 RYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-----VG-TY----T------------------ 520 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-----i~-~~----~------------------ 520 (626)
.---+||+||..|-..+.++++ .-.-.|+++|..+..++.|.+.-= ++ +. |
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~-F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKD-FGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred CcceeEeccCCcchhHHHHHHh-hccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 3445999999999999999886 111246777777555555544321 00 00 0
Q ss_pred --------cc---------cccCCCCC-Cccceeeeccccc--cCCC-CCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 521 --------NW---------CEAMSTYP-RTYDLIHADSVFS--LYKD-RCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 521 --------~~---------~e~~~~yp-~t~Dlih~~~~f~--~~~~-~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
-| ...|...- +-||+|-|-.+=- |+.+ ...+-..+.-+.|.|+|||++|+--
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred ccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence 00 00111122 5688888833311 3322 2456778999999999999999963
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.45 Score=51.88 Aligned_cols=101 Identities=14% Similarity=0.075 Sum_probs=70.3
Q ss_pred CEEEEeCCCCchHHHHHhhCC-------------------------------------------cEEEeCCccchHHHHH
Q 006905 213 RTAIDTGCGVASWGAYLLSRN-------------------------------------------IITMSFAPRDTHEAQV 249 (626)
Q Consensus 213 ~~VLDIGCGtG~~a~~La~~~-------------------------------------------V~avdis~~dls~a~i 249 (626)
..++|-=||+|++....+-.. +.++|+++..+.. +.
T Consensus 193 ~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~-Ak 271 (381)
T COG0116 193 EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG-AK 271 (381)
T ss_pred CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH-HH
Confidence 579999999998887655432 5699998866654 44
Q ss_pred HHHHHcCCC--eEEEEcccccCCCCCCCeeEEEecccccc-cccc-----H-HHHHHHHHhcccCCeEEEEEeC
Q 006905 250 QFALERGVP--ALIGVLAAERLPYPSRAFDMAHCSRCLIP-WNQF-----G-GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 250 ~~A~erg~~--~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h-~~~~-----~-~~~L~Ei~RvLKPGG~lvis~p 314 (626)
..|++.|+. +.|.++|+..++-+-+.+|+|+||...-. .... . ..+...+.+.++--+.++++++
T Consensus 272 ~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 272 ANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 456666775 77888888888744478999999884311 1111 1 2445567788888888988865
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.66 Score=48.56 Aligned_cols=118 Identities=17% Similarity=0.205 Sum_probs=73.9
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccH---HHHHHhcc-------cceeccccccCCC-----------
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTL---GVIYERGL-------VGTYTNWCEAMST----------- 528 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l---~~~~~rgl-------i~~~~~~~e~~~~----------- 528 (626)
--+||==|||.|..|-.++.+|. .+-+.+.|--|| .+++.... ....|.||...+.
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~G~---~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKLGY---AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhccc---eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 34699999999999999999987 445555553332 34444321 1233333222211
Q ss_pred -----------------------CC-----CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEE--------Ec
Q 006905 529 -----------------------YP-----RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIF--------RD 572 (626)
Q Consensus 529 -----------------------yp-----~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~--------~d 572 (626)
|+ ++||.|-..-..... -++-+.|..|.++|||||++|= .+
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA---~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~ 210 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTA---ENIIEYIETIEHLLKPGGYWINFGPLLYHFEP 210 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeech---HHHHHHHHHHHHHhccCCEEEecCCccccCCC
Confidence 22 255544442111111 2577899999999999997764 23
Q ss_pred C-------hH-HHHHHHHHHHhCCCeeEE
Q 006905 573 D-------VD-ELVKVKRIIDALKWQSQI 593 (626)
Q Consensus 573 ~-------~~-~~~~~~~~~~~l~w~~~~ 593 (626)
. .+ .+++|+.+++.+-|++..
T Consensus 211 ~~~~~~~sveLs~eEi~~l~~~~GF~~~~ 239 (270)
T PF07942_consen 211 MSIPNEMSVELSLEEIKELIEKLGFEIEK 239 (270)
T ss_pred CCCCCCcccCCCHHHHHHHHHHCCCEEEE
Confidence 2 23 489999999999999864
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.3 Score=52.63 Aligned_cols=80 Identities=16% Similarity=0.174 Sum_probs=41.4
Q ss_pred CCCCCEEEEeCCCCchHHHHHhhC--------------------CcEEEeCCccchHHHHHHHHHHc-----CCCeE-EE
Q 006905 209 DGSIRTAIDTGCGVASWGAYLLSR--------------------NIITMSFAPRDTHEAQVQFALER-----GVPAL-IG 262 (626)
Q Consensus 209 ~~~~~~VLDIGCGtG~~a~~La~~--------------------~V~avdis~~dls~a~i~~A~er-----g~~~~-~~ 262 (626)
....-+|+|+||..|..+..+.+. .|.--|+-..|.+.-...+.... ..+.. ..
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 344568999999999666554332 24556777777765444333221 12222 22
Q ss_pred Ecc-cccCCCCCCCeeEEEecccccccc
Q 006905 263 VLA-AERLPYPSRAFDMAHCSRCLIPWN 289 (626)
Q Consensus 263 v~d-~~~Lpf~d~sFDlV~~~~~l~h~~ 289 (626)
+.. ...--||+++.|+++++.++ ||.
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~al-HWL 120 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYAL-HWL 120 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-T-TB-
T ss_pred cCchhhhccCCCCceEEEEEechh-hhc
Confidence 222 33333789999999999999 664
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.19 Score=48.63 Aligned_cols=69 Identities=22% Similarity=0.197 Sum_probs=41.2
Q ss_pred EEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccC-C-CCCCC-eeEEEecc
Q 006905 214 TAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERL-P-YPSRA-FDMAHCSR 283 (626)
Q Consensus 214 ~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~L-p-f~d~s-FDlV~~~~ 283 (626)
+|||+.||.|..+..+++. .|+++|+++..+. -....|+-.|+ .+.+..+|...+ + +..+. ||+|+++.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~-~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLE-CAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHH-HHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHH-HHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 7999999999999999997 5999999774433 23334545565 367777774332 2 12222 89999866
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.089 Score=55.70 Aligned_cols=67 Identities=13% Similarity=0.247 Sum_probs=48.3
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc---cceeccccccCCCCC-Cccceeeeccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL---VGTYTNWCEAMSTYP-RTYDLIHADSV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~~~~e~~~~yp-~t~Dlih~~~~ 541 (626)
-.+|||+|||.|.++..|++.+. .|+.+|.++++++.+.++ |+ +.+++ .++..++ ..||.|.++.-
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~~~---~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~---~Dal~~~~~~~d~VvaNlP 110 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQLAK---KVIAIEIDPRMVAELKKRFQNSPLASKLEVIE---GDALKTEFPYFDVCVANVP 110 (294)
T ss_pred cCEEEEecCchHHHHHHHHHhCC---cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEE---CCHhhhcccccCEEEecCC
Confidence 45799999999999999998754 688899998899887764 22 23343 3444444 57898887543
Q ss_pred c
Q 006905 542 F 542 (626)
Q Consensus 542 f 542 (626)
+
T Consensus 111 Y 111 (294)
T PTZ00338 111 Y 111 (294)
T ss_pred c
Confidence 3
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.18 Score=50.08 Aligned_cols=100 Identities=14% Similarity=0.084 Sum_probs=54.8
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchH-------HHHHHHHHHcCCCeEEEEc-ccccCC-------CC
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTH-------EAQVQFALERGVPALIGVL-AAERLP-------YP 272 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls-------~a~i~~A~erg~~~~~~v~-d~~~Lp-------f~ 272 (626)
+.+|+|+=-|.|.|+..+... + .+..+.|.++. +.+...+++......-... ..-.++ .+
T Consensus 49 g~tVid~~PGgGy~TrI~s~~vgp~G-~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~~~ 127 (238)
T COG4798 49 GATVIDLIPGGGYFTRIFSPAVGPKG-KVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDLVP 127 (238)
T ss_pred CCEEEEEecCCccHhhhhchhcCCce-eEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcccccc
Confidence 559999999999999988775 3 34455443331 1111112121111100000 011122 12
Q ss_pred CCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 273 SRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 273 d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
..++|.++.+.-+ | ......+..++++.|||||.+++..+
T Consensus 128 ~~~~yhdmh~k~i-~-~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 128 TAQNYHDMHNKNI-H-PATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred cchhhhhhhcccc-C-cchHHHHHHHHHHhcCCCcEEEEEec
Confidence 3345554444433 3 23337899999999999999999754
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.19 Score=49.65 Aligned_cols=85 Identities=14% Similarity=0.187 Sum_probs=59.6
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc--cceeccccccCCCCCCccceeeeccccccCCC
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL--VGTYTNWCEAMSTYPRTYDLIHADSVFSLYKD 547 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl--i~~~~~~~e~~~~yp~t~Dlih~~~~f~~~~~ 547 (626)
-++|+|+|||+|.+|-+.+-.|.- .|..+|..+..++++.+..- .|-+--.|.+.+.+..-+|.+-.+-=|.....
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa~--~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPFG~~~r 123 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGAS--RVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPFGSQRR 123 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCCc--EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCCccccc
Confidence 456999999999887666555432 46677777778776654332 23333345677888899998888888887777
Q ss_pred CCCHHHHHH
Q 006905 548 RCETEDILL 556 (626)
Q Consensus 548 ~c~~~~~l~ 556 (626)
+.|.++++.
T Consensus 124 haDr~Fl~~ 132 (198)
T COG2263 124 HADRPFLLK 132 (198)
T ss_pred cCCHHHHHH
Confidence 778777653
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.39 Score=50.31 Aligned_cols=121 Identities=13% Similarity=0.138 Sum_probs=74.3
Q ss_pred CCceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHH--hcccceecc-ccccCCC--CC-Cccceeeecc
Q 006905 468 GRYRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYE--RGLVGTYTN-WCEAMST--YP-RTYDLIHADS 540 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~--rgli~~~~~-~~e~~~~--yp-~t~Dlih~~~ 540 (626)
-.-++|||+|||.|...-+..+. + -.-.++.+|.++.|++++.. ++.....+. |-..+.. -+ ...|||-++.
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~ 110 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASY 110 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEeh
Confidence 34678999999999765555432 1 13478889999888885322 222222221 2121221 11 3449999999
Q ss_pred ccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh-----HHHHHHHHHHHhCCCeeE
Q 006905 541 VFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV-----DELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 541 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~-----~~~~~~~~~~~~l~w~~~ 592 (626)
+++.+.+ -....++..+=+-+.+ ++||-|+- +.+..+++.+....+.+.
T Consensus 111 ~L~EL~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~ 164 (274)
T PF09243_consen 111 VLNELPS-AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAHVV 164 (274)
T ss_pred hhhcCCc-hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCceE
Confidence 9998876 4566677777555555 88886543 467777777755554443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.97 Score=42.28 Aligned_cols=96 Identities=15% Similarity=0.004 Sum_probs=52.9
Q ss_pred CCCCEEEEeCCCCchHHHHHhh-----C---CcEEEeCCccchHHHHHHHHHHcCCC----eEEEEcccccCCCCCCCee
Q 006905 210 GSIRTAIDTGCGVASWGAYLLS-----R---NIITMSFAPRDTHEAQVQFALERGVP----ALIGVLAAERLPYPSRAFD 277 (626)
Q Consensus 210 ~~~~~VLDIGCGtG~~a~~La~-----~---~V~avdis~~dls~a~i~~A~erg~~----~~~~v~d~~~Lpf~d~sFD 277 (626)
.+...|+|+|||.|.++..|+. . .|+++|..+... +...+.+.+.+.. ..+...+..... .....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLV-ESAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHH-HHHHHHHHHhcchhhccchhhccchhhhc-ccCCCe
Confidence 3466899999999999999888 3 678888766433 3333344333311 122221111111 144566
Q ss_pred EEEeccccccccccH-HHHHHHHHhcccCCeEEEEEeC
Q 006905 278 MAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 278 lV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+++.- |--.+. ..+|+-+.+ |+-.+++..|
T Consensus 102 ~~vgL----HaCG~Ls~~~l~~~~~---~~~~~l~~vp 132 (141)
T PF13679_consen 102 ILVGL----HACGDLSDRALRLFIR---PNARFLVLVP 132 (141)
T ss_pred EEEEe----ecccchHHHHHHHHHH---cCCCEEEEcC
Confidence 66653 444444 455555555 6655555444
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.54 Score=51.06 Aligned_cols=106 Identities=12% Similarity=0.036 Sum_probs=65.8
Q ss_pred EEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc------cceec-cccccCCC------CC---------
Q 006905 473 ILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL------VGTYT-NWCEAMST------YP--------- 530 (626)
Q Consensus 473 vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl------i~~~~-~~~e~~~~------yp--------- 530 (626)
|||++||+|.|+.+|++..- .|+.+|.++.+++.+.+.-- +.++. |.-+.+.. ++
T Consensus 201 vlDl~~G~G~~sl~la~~~~---~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
T TIGR02143 201 LLELYCGNGNFSLALAQNFR---RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS 277 (353)
T ss_pred EEEEeccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence 99999999999999987743 68999999999988876532 12222 11110110 10
Q ss_pred CccceeeeccccccCCCCCCH-HHHHHHhhhhccCCcEEEEEc-ChHHHHHHHHHHHhCCCeeE
Q 006905 531 RTYDLIHADSVFSLYKDRCET-EDILLEMDRILRPEGGVIFRD-DVDELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 531 ~t~Dlih~~~~f~~~~~~c~~-~~~l~E~dRiLRPgG~~i~~d-~~~~~~~~~~~~~~l~w~~~ 592 (626)
..||+|.. ... |..+ +.++.- |++|++.++++= +......++.+.++ |++.
T Consensus 278 ~~~d~v~l-----DPP-R~G~~~~~l~~---l~~~~~ivYvsC~p~tlaRDl~~L~~~--Y~l~ 330 (353)
T TIGR02143 278 YNCSTIFV-----DPP-RAGLDPDTCKL---VQAYERILYISCNPETLKANLEQLSET--HRVE 330 (353)
T ss_pred CCCCEEEE-----CCC-CCCCcHHHHHH---HHcCCcEEEEEcCHHHHHHHHHHHhcC--cEEE
Confidence 12576555 333 3333 344443 456999999984 44456667766655 7765
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.055 Score=47.68 Aligned_cols=93 Identities=16% Similarity=0.135 Sum_probs=37.8
Q ss_pred EEeCCCCchHHHHHhhC-------CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEccccc-CC-CCCCCeeEEEeccc
Q 006905 216 IDTGCGVASWGAYLLSR-------NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAER-LP-YPSRAFDMAHCSRC 284 (626)
Q Consensus 216 LDIGCGtG~~a~~La~~-------~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~-Lp-f~d~sFDlV~~~~~ 284 (626)
||||+..|..+..+++. .++++|..+. .+...+..++.+. .+.+..++... ++ +++++||+|+.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~--~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG--DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc--ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence 68998899777776653 3778887653 1122222322222 35566555332 22 33578999997542
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEE
Q 006905 285 LIPWNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 285 l~h~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
|-.+.....+..+.+.|+|||.+++-
T Consensus 79 --H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 79 --HSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred --CCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 33333467889999999999999885
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.4 Score=50.00 Aligned_cols=102 Identities=14% Similarity=0.093 Sum_probs=49.7
Q ss_pred CCCEEEEeCCCCc--hHHHHHhh-----CCcEEEeCCccchHHHHHHHHHHcCCC--eEEEEcccccCC--CC----CCC
Q 006905 211 SIRTAIDTGCGVA--SWGAYLLS-----RNIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAERLP--YP----SRA 275 (626)
Q Consensus 211 ~~~~VLDIGCGtG--~~a~~La~-----~~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~Lp--f~----d~s 275 (626)
.++..||||||-= ......++ ..|..+|.+|.-+..+..-+ ..... ..+..+|..+.. +. .+-
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL--~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~ 145 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALL--ADNPRGRTAYVQADLRDPEAILAHPEVRGL 145 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHH--TT-TTSEEEEEE--TT-HHHHHCSHHHHCC
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhh--cCCCCccEEEEeCCCCCHHHHhcCHHHHhc
Confidence 3678999999953 23333433 27899999874333222111 12222 456666643211 00 112
Q ss_pred ee-----EEEeccccccccc--cHHHHHHHHHhcccCCeEEEEEeC
Q 006905 276 FD-----MAHCSRCLIPWNQ--FGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 276 FD-----lV~~~~~l~h~~~--~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+| .|+...++|+..+ ++..++..+...|.||.+|+|+..
T Consensus 146 lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 146 LDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp --TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred CCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 22 3444555655544 447899999999999999999853
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.84 Score=49.10 Aligned_cols=102 Identities=16% Similarity=0.196 Sum_probs=53.5
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC---eEEEEcccccCCCC-CCCeeEEEec
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVP---ALIGVLAAERLPYP-SRAFDMAHCS 282 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~---~~~~v~d~~~Lpf~-d~sFDlV~~~ 282 (626)
..+|||+|.|.|.-...+-+- .++.++.++ .+.+---..+..-... ..-......+++++ ...|++|+..
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp-~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~ 192 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASP-ALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVL 192 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCH-HHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhh
Confidence 457999999998655444332 333344333 1211111122111110 00011113355554 3457777765
Q ss_pred cccccccccH--HHHHHHHHhcccCCeEEEEEeC
Q 006905 283 RCLIPWNQFG--GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 283 ~~l~h~~~~~--~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.-|.|....- ...++.+..+++|||.|+|..+
T Consensus 193 ~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 193 DELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred hhhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 5554432211 2478889999999999999865
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.33 Score=53.38 Aligned_cols=123 Identities=20% Similarity=0.193 Sum_probs=81.0
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc----ccceeccc--cccCCCC---C---Cccceee
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG----LVGTYTNW--CEAMSTY---P---RTYDLIH 537 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg----li~~~~~~--~e~~~~y---p---~t~Dlih 537 (626)
-+.|||+=|.+|||+-+.+.-|. -.|+.+|.+...|+.+.+.- +-+.-|.| ...|.-+ - .+||+|-
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 46799999999999999888876 25777899988888776653 32222433 2223322 2 3999998
Q ss_pred ecc-ccccCCCC-----CCHHHHHHHhhhhccCCcEEEEEcC------hHHHHHHHHHHHhCCCeeEEe
Q 006905 538 ADS-VFSLYKDR-----CETEDILLEMDRILRPEGGVIFRDD------VDELVKVKRIIDALKWQSQIV 594 (626)
Q Consensus 538 ~~~-~f~~~~~~-----c~~~~~l~E~dRiLRPgG~~i~~d~------~~~~~~~~~~~~~l~w~~~~~ 594 (626)
.+= .|...+.. =+...++...-+||+|||.++++-. ...+..|.+-+..+.=..++.
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~~ 364 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQEI 364 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhcCCcEEEe
Confidence 742 34433221 1334688999999999999999742 345666666666664444444
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=91.62 E-value=0.61 Score=47.37 Aligned_cols=132 Identities=16% Similarity=0.285 Sum_probs=78.6
Q ss_pred ceeEEeccCchhhHhhhhhC----CC-eEEEEeccCccCcccHHHHHHhc-ccceeccccccCCCCCCcccee--eeccc
Q 006905 470 YRNILDMNAHLGGFAAALID----FP-VWVMNVVPAEAKINTLGVIYERG-LVGTYTNWCEAMSTYPRTYDLI--HADSV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~----~~-v~~mnv~~~~~~~~~l~~~~~rg-li~~~~~~~e~~~~yp~t~Dli--h~~~~ 541 (626)
-..||-+||..|+...++.+ .| |+.+...|.-.. +.+.++-.|- +|.++.| ..+|..|-.+ ..+-+
T Consensus 74 gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~r-dL~~la~~R~NIiPIl~D-----Ar~P~~Y~~lv~~VDvI 147 (229)
T PF01269_consen 74 GSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMR-DLLNLAKKRPNIIPILED-----ARHPEKYRMLVEMVDVI 147 (229)
T ss_dssp T-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHH-HHHHHHHHSTTEEEEES------TTSGGGGTTTS--EEEE
T ss_pred CCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHH-HHHHHhccCCceeeeecc-----CCChHHhhcccccccEE
Confidence 45799999999999988864 33 567777777664 7777887774 4677766 4455333211 12333
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEEc----------ChHHHHHHHHHHHhCCCeeE-EeecCCCCCCcceEEEE
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFRD----------DVDELVKVKRIIDALKWQSQ-IVDHEDGPLEREKLLFA 609 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d----------~~~~~~~~~~~~~~l~w~~~-~~~~e~~~~~~e~~l~~ 609 (626)
|......-..+-+++-++.-||+||+++|.- +.++...-.+.++.-..+.. ..+.| |+.++.++|.
T Consensus 148 ~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~Le--Py~~dH~~vv 224 (229)
T PF01269_consen 148 FQDVAQPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLE--PYERDHAMVV 224 (229)
T ss_dssp EEE-SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-T--TTSTTEEEEE
T ss_pred EecCCChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChheEeccC--CCCCCcEEEE
Confidence 4443344344567888899999999999962 22333333333444445543 44455 5556655554
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.57 E-value=0.56 Score=49.41 Aligned_cols=120 Identities=13% Similarity=0.140 Sum_probs=73.7
Q ss_pred cCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceeccccc-------------cCCCCC
Q 006905 464 LGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCE-------------AMSTYP 530 (626)
Q Consensus 464 ~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e-------------~~~~yp 530 (626)
+.. +..|.||=+|-|.||.++.+++.+- +-.++-++..+..++++.+.= +..|.++. -...++
T Consensus 72 ~ah-~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l--~~~~~~~~dpRv~i~i~Dg~~~v~~~~ 147 (282)
T COG0421 72 LAH-PNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYL--PEPSGGADDPRVEIIIDDGVEFLRDCE 147 (282)
T ss_pred hhC-CCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhc--cCcccccCCCceEEEeccHHHHHHhCC
Confidence 344 5568999999999999999998852 335555566556777665543 44442222 112256
Q ss_pred CccceeeeccccccCCCCCCH-HHHHHHhhhhccCCcEEEEEcC-h----HHHHHHHHHHHhC
Q 006905 531 RTYDLIHADSVFSLYKDRCET-EDILLEMDRILRPEGGVIFRDD-V----DELVKVKRIIDAL 587 (626)
Q Consensus 531 ~t~Dlih~~~~f~~~~~~c~~-~~~l~E~dRiLRPgG~~i~~d~-~----~~~~~~~~~~~~l 587 (626)
++||+|-.+.-=......-.. ........|.|+|+|.++..-. . +.+..+.+..+++
T Consensus 148 ~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~v 210 (282)
T COG0421 148 EKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRV 210 (282)
T ss_pred CcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhh
Confidence 799999873321110100011 4577788999999999999711 1 3344555555666
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.39 E-value=0.37 Score=48.11 Aligned_cols=111 Identities=17% Similarity=0.183 Sum_probs=56.5
Q ss_pred eEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----------c-c--cceeccccccCCCCCCccceeee
Q 006905 472 NILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----------G-L--VGTYTNWCEAMSTYPRTYDLIHA 538 (626)
Q Consensus 472 ~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----------g-l--i~~~~~~~e~~~~yp~t~Dlih~ 538 (626)
..-|+||||||+-..|..+-- -.-+.+.+.-...-..+-|| | + |++++..|--| .|+-|..-..
T Consensus 63 efaDIGCGyGGLlv~Lsp~fP-dtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~--lpn~f~kgqL 139 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFP-DTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKF--LPNFFEKGQL 139 (249)
T ss_pred eEEeeccCccchhhhccccCc-cceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhh--ccchhhhccc
Confidence 468999999999888876510 01133333321122222222 1 1 56666544332 2544442222
Q ss_pred ccc---ccc--CC-----CCCCHHHHHHHhhhhccCCcEEEE-EcChHHHHHHHHHHH
Q 006905 539 DSV---FSL--YK-----DRCETEDILLEMDRILRPEGGVIF-RDDVDELVKVKRIID 585 (626)
Q Consensus 539 ~~~---f~~--~~-----~~c~~~~~l~E~dRiLRPgG~~i~-~d~~~~~~~~~~~~~ 585 (626)
+-. |.. .+ .|---..+|.|.--+||+||.++. +|-++...-+.+.+.
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~elh~wm~~~~e 197 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVKELHEWMVKHLE 197 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHHHHHHHHHHHHH
Confidence 222 221 11 111113588999999999999886 455554444444433
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.33 E-value=0.67 Score=49.76 Aligned_cols=74 Identities=14% Similarity=0.159 Sum_probs=46.9
Q ss_pred CCceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHh-----cc---cceec--cccccCCCC--C-Ccc
Q 006905 468 GRYRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYER-----GL---VGTYT--NWCEAMSTY--P-RTY 533 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~r-----gl---i~~~~--~~~e~~~~y--p-~t~ 533 (626)
+.-.+|||+|||.|+.+..|+.+ .-| +++++|.++..++.+.+. ++ |.+.+ +-...|..+ + ..|
T Consensus 113 ~~~~~vLDIGtGag~I~~lLa~~~~~~--~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~f 190 (321)
T PRK11727 113 GANVRVLDIGVGANCIYPLIGVHEYGW--RFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERF 190 (321)
T ss_pred CCCceEEEecCCccHHHHHHHhhCCCC--EEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCce
Confidence 45677999999999998888654 224 688888887777765532 23 22222 111112222 3 689
Q ss_pred ceeeeccccc
Q 006905 534 DLIHADSVFS 543 (626)
Q Consensus 534 Dlih~~~~f~ 543 (626)
|+|-|+==|-
T Consensus 191 DlivcNPPf~ 200 (321)
T PRK11727 191 DATLCNPPFH 200 (321)
T ss_pred EEEEeCCCCc
Confidence 9999976655
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=91.22 E-value=2.5 Score=43.57 Aligned_cols=164 Identities=13% Similarity=0.075 Sum_probs=92.9
Q ss_pred chhhhHHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCC-eEEEEeccCccCcccHHHHHHhcc------
Q 006905 443 FQQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFP-VWVMNVVPAEAKINTLGVIYERGL------ 515 (626)
Q Consensus 443 f~~d~~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~-v~~mnv~~~~~~~~~l~~~~~rgl------ 515 (626)
.+.|...+++.+.+..-++ . ...++||=+|.|.|+.++.|++.+ + .+|+-+|..+..++++.+---
T Consensus 55 ~e~de~~y~e~l~h~~~~~----~-~~p~~VLiiGgG~G~~~~ell~~~~~--~~i~~VEiD~~Vv~~a~~~f~~~~~~~ 127 (246)
T PF01564_consen 55 SERDEFIYHEMLVHPPLLL----H-PNPKRVLIIGGGDGGTARELLKHPPV--ESITVVEIDPEVVELARKYFPEFSEGL 127 (246)
T ss_dssp ETTTHHHHHHHHHHHHHHH----S-SST-EEEEEESTTSHHHHHHTTSTT---SEEEEEES-HHHHHHHHHHTHHHHTTG
T ss_pred EEechHHHHHHHhhhHhhc----C-CCcCceEEEcCCChhhhhhhhhcCCc--ceEEEEecChHHHHHHHHhchhhcccc
Confidence 4556566666665433322 2 358999999999999999999886 4 355566666678887755310
Q ss_pred ----cceec-cccccCCCCCC-ccceeeeccccccCCC-CCCHHHHHHHhhhhccCCcEEEEEc-----ChHHHHHHHHH
Q 006905 516 ----VGTYT-NWCEAMSTYPR-TYDLIHADSVFSLYKD-RCETEDILLEMDRILRPEGGVIFRD-----DVDELVKVKRI 583 (626)
Q Consensus 516 ----i~~~~-~~~e~~~~yp~-t~Dlih~~~~f~~~~~-~c~~~~~l~E~dRiLRPgG~~i~~d-----~~~~~~~~~~~ 583 (626)
+.+++ |=-+-+...++ +||+|-.+..-..... .---...+..+.|.|+|||.+++.- ..+....+.+.
T Consensus 128 ~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~t 207 (246)
T PF01564_consen 128 DDPRVRIIIGDGRKFLKETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKT 207 (246)
T ss_dssp GSTTEEEEESTHHHHHHTSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHH
T ss_pred CCCceEEEEhhhHHHHHhccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHH
Confidence 11222 11111234566 9999987333211110 0111568899999999999999862 23455666666
Q ss_pred HHhCCCeeEEeecCCC--CCCcceEEEEEecc
Q 006905 584 IDALKWQSQIVDHEDG--PLEREKLLFAVKLY 613 (626)
Q Consensus 584 ~~~l~w~~~~~~~e~~--~~~~e~~l~~~K~~ 613 (626)
++...-.+..+-.--- +..---++++.|..
T Consensus 208 l~~~F~~v~~~~~~vP~~~~~~~~~~~~s~~~ 239 (246)
T PF01564_consen 208 LRSVFPQVKPYTAYVPSYGSGWWSFASASKDI 239 (246)
T ss_dssp HHTTSSEEEEEEEECTTSCSSEEEEEEEESST
T ss_pred HHHhCCceEEEEEEcCeecccceeEEEEeCCC
Confidence 6666666554321111 11123466666654
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.05 E-value=0.22 Score=49.07 Aligned_cols=92 Identities=20% Similarity=0.151 Sum_probs=61.1
Q ss_pred CEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHc----C-CCeEEEEcccccCCCCCCCeeEEEecccc
Q 006905 213 RTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALER----G-VPALIGVLAAERLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 213 ~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~er----g-~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l 285 (626)
.++.|+|+|+|.++...++. .|++++.+|. ....|.++ | .+..+.++|+....| ...|+|+|-..=
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk-----~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlD 106 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPK-----RARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLD 106 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcH-----HHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhh
Confidence 37999999999777665554 7899988663 33344444 2 245667777777777 468999994421
Q ss_pred cc-ccccHHHHHHHHHhcccCCeEEEE
Q 006905 286 IP-WNQFGGIYLIEVDRVLRPGGYWIL 311 (626)
Q Consensus 286 ~h-~~~~~~~~L~Ei~RvLKPGG~lvi 311 (626)
.- ..+.....+..+...||-.+.++=
T Consensus 107 TaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 107 TALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred HHhhcccccHHHHHHHHHhhcCCcccc
Confidence 11 122235677777788888888764
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=90.92 E-value=1.7 Score=42.18 Aligned_cols=95 Identities=20% Similarity=0.233 Sum_probs=61.7
Q ss_pred eCCCCchHHHHHhhC-----CcEEEeCCccch-------HHHHHHHHHHcCCCeEEEEcccccCC----CCCCCeeEEEe
Q 006905 218 TGCGVASWGAYLLSR-----NIITMSFAPRDT-------HEAQVQFALERGVPALIGVLAAERLP----YPSRAFDMAHC 281 (626)
Q Consensus 218 IGCGtG~~a~~La~~-----~V~avdis~~dl-------s~a~i~~A~erg~~~~~~v~d~~~Lp----f~d~sFDlV~~ 281 (626)
||=|.=+|+..|++. ++++++++..+. ....++..++.|+.+.+. .|+..+. ...+.||.|+-
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~-VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHG-VDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccC-CCCCcccccccccCCcCCEEEE
Confidence 566777888888875 577777754321 112233334566655554 3655554 35678999999
Q ss_pred ccccccccc-----------cH-HHHHHHHHhcccCCeEEEEEe
Q 006905 282 SRCLIPWNQ-----------FG-GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 282 ~~~l~h~~~-----------~~-~~~L~Ei~RvLKPGG~lvis~ 313 (626)
++....... .. ..+|..+.++|+++|.+.|+.
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl 125 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTL 125 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 886433110 01 368899999999999999985
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.89 E-value=0.43 Score=47.98 Aligned_cols=90 Identities=20% Similarity=0.224 Sum_probs=58.7
Q ss_pred ceeEEeccCchhhHhhhhh----CCCeEEEEeccCccCcccHHHH----------------HHhcccceeccccccCCCC
Q 006905 470 YRNILDMNAHLGGFAAALI----DFPVWVMNVVPAEAKINTLGVI----------------YERGLVGTYTNWCEAMSTY 529 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~----~~~v~~mnv~~~~~~~~~l~~~----------------~~rgli~~~~~~~e~~~~y 529 (626)
--+.||+|.|+|-+.+.++ ..+. |+++++..++.++.. +++|=+.+.-+-| ..-|
T Consensus 83 G~s~LdvGsGSGYLt~~~~~mvg~~g~---~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDg--r~g~ 157 (237)
T KOG1661|consen 83 GASFLDVGSGSGYLTACFARMVGATGG---NVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDG--RKGY 157 (237)
T ss_pred CcceeecCCCccHHHHHHHHHhcCCCc---cccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCc--cccC
Confidence 3468999999998776554 3344 568888776665533 3344333222211 1225
Q ss_pred C--CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 530 P--RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 530 p--~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
| .-||-||+. .....+..|+=-.|+|||.+++--.
T Consensus 158 ~e~a~YDaIhvG---------Aaa~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 158 AEQAPYDAIHVG---------AAASELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred CccCCcceEEEc---------cCccccHHHHHHhhccCCeEEEeec
Confidence 5 889999992 3446788888889999999998643
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=90.77 E-value=0.77 Score=47.71 Aligned_cols=82 Identities=17% Similarity=0.254 Sum_probs=46.6
Q ss_pred CCccceeeeccccc-cCCCCCCHHHHHHHhhhhccCCcEEEEEcCh---------------H-HHHHHHHHHHhCCCeeE
Q 006905 530 PRTYDLIHADSVFS-LYKDRCETEDILLEMDRILRPEGGVIFRDDV---------------D-ELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 530 p~t~Dlih~~~~f~-~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~---------------~-~~~~~~~~~~~l~w~~~ 592 (626)
|+.||.|-+...+. ...++-.....|..|-+.|||||++|+..-. . ..+.|++.++.--..+.
T Consensus 156 p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~ 235 (256)
T PF01234_consen 156 PPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDIE 235 (256)
T ss_dssp -SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTTEEEE
T ss_pred ccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcCCEEE
Confidence 56799887744333 2233334456999999999999999996211 0 13455566666666665
Q ss_pred EeecCCCCCC--cceEEEEEe
Q 006905 593 IVDHEDGPLE--REKLLFAVK 611 (626)
Q Consensus 593 ~~~~e~~~~~--~e~~l~~~K 611 (626)
.........+ ..=+++|||
T Consensus 236 ~~~~~~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 236 DLEKQSKVSDYEGMFFLVARK 256 (256)
T ss_dssp EEEG-TTTB---EEEEEEEEE
T ss_pred ecccccCcCCCCcEEEEEEeC
Confidence 5443222222 233455555
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.74 E-value=0.47 Score=48.27 Aligned_cols=108 Identities=13% Similarity=0.196 Sum_probs=64.0
Q ss_pred CceecCCCC-CCCCCcHHHHHHHHHHhhccCC----CCCCEEEEeCCCCchHH----HHHhhCCcEEEeCCccchHHHHH
Q 006905 179 DRFRFPGGG-TMFPNGADAYIDDIGKLINLND----GSIRTAIDTGCGVASWG----AYLLSRNIITMSFAPRDTHEAQV 249 (626)
Q Consensus 179 e~~~Fp~gg-t~F~~ga~~yi~~L~~ll~l~~----~~~~~VLDIGCGtG~~a----~~La~~~V~avdis~~dls~a~i 249 (626)
.++.+|.+- ----.|...|+..|+++|.... +...++||||.|.--+- .+.-.-.+++.|+++..++.++.
T Consensus 41 ~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ 120 (292)
T COG3129 41 RYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKA 120 (292)
T ss_pred eEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHH
Confidence 456666542 1123567789999999997432 34568999998876332 22233367888888877776665
Q ss_pred HHHHHcCCC--eEEEEc-cccc-CC---CCCCCeeEEEeccccc
Q 006905 250 QFALERGVP--ALIGVL-AAER-LP---YPSRAFDMAHCSRCLI 286 (626)
Q Consensus 250 ~~A~erg~~--~~~~v~-d~~~-Lp---f~d~sFDlV~~~~~l~ 286 (626)
......+.. +.+... +... ++ -..+.||++.|+..+|
T Consensus 121 ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh 164 (292)
T COG3129 121 IISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFH 164 (292)
T ss_pred HHHcCcchhhheeEEeccCccccccccccccceeeeEecCCCcc
Confidence 555443332 222211 1111 11 1256899999999763
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=90.58 E-value=1.7 Score=47.46 Aligned_cols=107 Identities=14% Similarity=0.170 Sum_probs=65.0
Q ss_pred eEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceeccccccC-CCC---------------
Q 006905 472 NILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYTNWCEAM-STY--------------- 529 (626)
Q Consensus 472 ~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~~~~e~~-~~y--------------- 529 (626)
.|||++||+|+|+.+|++..- .|+.+|.++.+++.+.+. |+ +.+++.=.+.+ ...
T Consensus 209 ~vLDl~~G~G~~sl~la~~~~---~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~ 285 (362)
T PRK05031 209 DLLELYCGNGNFTLALARNFR---RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLK 285 (362)
T ss_pred eEEEEeccccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccccc
Confidence 499999999999999987633 688999998999877764 32 22222111111 000
Q ss_pred CCccceeeeccccccCCCCCC-HHHHHHHhhhhccCCcEEEEEcChHH-HHHHHHHHHhCCCeeE
Q 006905 530 PRTYDLIHADSVFSLYKDRCE-TEDILLEMDRILRPEGGVIFRDDVDE-LVKVKRIIDALKWQSQ 592 (626)
Q Consensus 530 p~t~Dlih~~~~f~~~~~~c~-~~~~l~E~dRiLRPgG~~i~~d~~~~-~~~~~~~~~~l~w~~~ 592 (626)
...||+|-.+ .. |-. .+.++. .|++|++.++++=.... ...++.+.+ .|++.
T Consensus 286 ~~~~D~v~lD-----PP-R~G~~~~~l~---~l~~~~~ivyvSC~p~tlarDl~~L~~--gY~l~ 339 (362)
T PRK05031 286 SYNFSTIFVD-----PP-RAGLDDETLK---LVQAYERILYISCNPETLCENLETLSQ--THKVE 339 (362)
T ss_pred CCCCCEEEEC-----CC-CCCCcHHHHH---HHHccCCEEEEEeCHHHHHHHHHHHcC--CcEEE
Confidence 0147887762 21 222 134443 44458999999855544 444666654 57665
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=90.51 E-value=1.1 Score=48.30 Aligned_cols=108 Identities=15% Similarity=0.151 Sum_probs=70.7
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc----cc---eeccccccCCCCC-Cccceeeecccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL----VG---TYTNWCEAMSTYP-RTYDLIHADSVF 542 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl----i~---~~~~~~e~~~~yp-~t~Dlih~~~~f 542 (626)
-+|||==||+|||.-..-=.|+ ++++.|....|+.-+. ..| |. ++-.|--...++| .++|.|-++-=.
T Consensus 199 ~~vlDPFcGTGgiLiEagl~G~---~viG~Did~~mv~gak-~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDPPY 274 (347)
T COG1041 199 ELVLDPFCGTGGILIEAGLMGA---RVIGSDIDERMVRGAK-INLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDPPY 274 (347)
T ss_pred CEeecCcCCccHHHHhhhhcCc---eEeecchHHHHHhhhh-hhhhhhCcCceeEEEecccccCCCCCCccceEEecCCC
Confidence 3799999999999655444455 8999999988877532 222 11 2222223334466 569999987655
Q ss_pred ccCC--CCCC----HHHHHHHhhhhccCCcEEEEEcChHHHHHHHH
Q 006905 543 SLYK--DRCE----TEDILLEMDRILRPEGGVIFRDDVDELVKVKR 582 (626)
Q Consensus 543 ~~~~--~~c~----~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~ 582 (626)
.... .+-. +...|.++.++|++||++++--+.+....+++
T Consensus 275 Grst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~~~~~~~ 320 (347)
T COG1041 275 GRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDPRHELEE 320 (347)
T ss_pred CcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcchhhHhh
Confidence 5322 2222 45688999999999999999776544444443
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.39 E-value=0.36 Score=54.14 Aligned_cols=66 Identities=26% Similarity=0.356 Sum_probs=46.6
Q ss_pred HHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEcccc
Q 006905 199 DDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAE 267 (626)
Q Consensus 199 ~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~ 267 (626)
..+.+.+.+.. ...+||+-||||.++..+++. .|+++++++.+... +...|..+|+. +.|.++-++
T Consensus 373 s~i~e~~~l~~--~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~d-A~~nA~~NgisNa~Fi~gqaE 441 (534)
T KOG2187|consen 373 STIGEWAGLPA--DKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVED-AEKNAQINGISNATFIVGQAE 441 (534)
T ss_pred HHHHHHhCCCC--CcEEEEEeecCCceehhhhccccceeeeecChhhcch-hhhcchhcCccceeeeecchh
Confidence 34455554444 358999999999999999997 89999998865543 44456666764 667666333
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.26 E-value=3.8 Score=41.17 Aligned_cols=98 Identities=16% Similarity=0.148 Sum_probs=65.9
Q ss_pred CCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCC----CCCCCeeEEEe
Q 006905 210 GSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLP----YPSRAFDMAHC 281 (626)
Q Consensus 210 ~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lp----f~d~sFDlV~~ 281 (626)
..+.+||=+|+.+|+...+..+- .+.++++++.... ..+..|.+|.- +.-...|+ +.| .--+..|+|++
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~r-eLl~~a~~R~N-i~PIL~DA-~~P~~Y~~~Ve~VDviy~ 151 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMR-ELLDVAEKRPN-IIPILEDA-RKPEKYRHLVEKVDVIYQ 151 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHH-HHHHHHHhCCC-ceeeeccc-CCcHHhhhhcccccEEEE
Confidence 34569999999999887777763 3889999996554 56777776642 11122333 333 12346899987
Q ss_pred ccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 282 SRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 282 ~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
--+= +++...+..++...||+||+++++.
T Consensus 152 DVAQ---p~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 152 DVAQ---PNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred ecCC---chHHHHHHHHHHHhcccCCeEEEEE
Confidence 4421 2223677888999999999888864
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=90.18 E-value=0.31 Score=45.66 Aligned_cols=60 Identities=15% Similarity=0.183 Sum_probs=42.5
Q ss_pred HHHHHHHhhhhcC----CCCCceeEEeccCchhhHhhhhhC-----CCeEEEEeccCccCcccHHHHHHhc
Q 006905 453 RLSYYKTMNNQLG----QSGRYRNILDMNAHLGGFAAALID-----FPVWVMNVVPAEAKINTLGVIYERG 514 (626)
Q Consensus 453 ~v~~y~~~~~~~~----~~~~~r~vlD~g~g~G~faa~l~~-----~~v~~mnv~~~~~~~~~l~~~~~rg 514 (626)
.|.++..++..+. .......|+|+|||-|-++..|+. . ...+|+.+|..+..++.+.+|-
T Consensus 5 Ei~~~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~--~~~~v~~iD~~~~~~~~a~~~~ 73 (141)
T PF13679_consen 5 EIERMAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSS--PNLRVLGIDCNESLVESAQKRA 73 (141)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcC--CCCeEEEEECCcHHHHHHHHHH
Confidence 3555555554321 125688999999999999999988 4 3348888998877777666554
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=89.96 E-value=7.8 Score=39.93 Aligned_cols=115 Identities=17% Similarity=0.157 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhhccCCCCCCEEEEeCCCCc-hHHHHHhh--CCcEEEeCCccchHHHHHHHHHHcCCCeEEEEccc-ccC
Q 006905 194 ADAYIDDIGKLINLNDGSIRTAIDTGCGVA-SWGAYLLS--RNIITMSFAPRDTHEAQVQFALERGVPALIGVLAA-ERL 269 (626)
Q Consensus 194 a~~yi~~L~~ll~l~~~~~~~VLDIGCGtG-~~a~~La~--~~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~-~~L 269 (626)
++..+.+..-+.....-.+++||=+|=..- +++..|.. ..|+++|++..-+ ....+.|.+.|+++.....|. ..|
T Consensus 27 ~eT~~~Ra~~~~~~gdL~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll-~fI~~~a~~~gl~i~~~~~DlR~~L 105 (243)
T PF01861_consen 27 PETTLRRAALMAERGDLEGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLL-DFINRVAEEEGLPIEAVHYDLRDPL 105 (243)
T ss_dssp HHHHHHHHHHHHHTT-STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHH-HHHHHHHHHHT--EEEE---TTS--
T ss_pred HHHHHHHHHHHHhcCcccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHH-HHHHHHHHHcCCceEEEEecccccC
Confidence 344444444444444445779999986655 55655544 3899999987433 345567788899887777774 335
Q ss_pred CC-CCCCeeEEEeccccccccccH-HHHHHHHHhcccCCe-EEEEE
Q 006905 270 PY-PSRAFDMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGG-YWILS 312 (626)
Q Consensus 270 pf-~d~sFDlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG-~lvis 312 (626)
|- -.++||++++.. ++.... ..++......||.-| ..+++
T Consensus 106 P~~~~~~fD~f~TDP---PyT~~G~~LFlsRgi~~Lk~~g~~gy~~ 148 (243)
T PF01861_consen 106 PEELRGKFDVFFTDP---PYTPEGLKLFLSRGIEALKGEGCAGYFG 148 (243)
T ss_dssp -TTTSS-BSEEEE------SSHHHHHHHHHHHHHTB-STT-EEEEE
T ss_pred CHHHhcCCCEEEeCC---CCCHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 52 247899999977 444333 678888888998766 44443
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=89.95 E-value=2.4 Score=48.37 Aligned_cols=143 Identities=14% Similarity=0.128 Sum_probs=83.2
Q ss_pred CceeEEeccCchhhHhhhhhCCC-------eEEEEeccCccCcccHHHHHHh----c-c-cceec-c-ccccCC---CCC
Q 006905 469 RYRNILDMNAHLGGFAAALIDFP-------VWVMNVVPAEAKINTLGVIYER----G-L-VGTYT-N-WCEAMS---TYP 530 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~-------v~~mnv~~~~~~~~~l~~~~~r----g-l-i~~~~-~-~~e~~~---~yp 530 (626)
...+|||-+||.|+|..+++++- -...|+...|..+..+..+..+ + + +.+.+ + .|..+. .+.
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 34579999999999999887531 1346889999887777766543 1 1 11121 1 222221 233
Q ss_pred CccceeeeccccccCCC--------------------------------CCC-----------HHHHHHH-hhhhccCCc
Q 006905 531 RTYDLIHADSVFSLYKD--------------------------------RCE-----------TEDILLE-MDRILRPEG 566 (626)
Q Consensus 531 ~t~Dlih~~~~f~~~~~--------------------------------~c~-----------~~~~l~E-~dRiLRPgG 566 (626)
..||+|-++==|...+. .|+ ...++.| ..++|+|||
T Consensus 111 ~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~~G 190 (524)
T TIGR02987 111 DLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANKNG 190 (524)
T ss_pred CcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCCCC
Confidence 68999888765553221 111 1124556 489999999
Q ss_pred EEEEEcCh-----HHHHHHHH-HHHhCCCeeEEeecCC------CCCCcceEEEEEec
Q 006905 567 GVIFRDDV-----DELVKVKR-IIDALKWQSQIVDHED------GPLEREKLLFAVKL 612 (626)
Q Consensus 567 ~~i~~d~~-----~~~~~~~~-~~~~l~w~~~~~~~e~------~~~~~e~~l~~~K~ 612 (626)
++.+=-+. ..-..+++ +++..+.... ++-++ +-..+-.|++.+|.
T Consensus 191 ~~~~I~P~s~l~~~~~~~lR~~ll~~~~i~~I-~~f~~~~~lF~~v~~~~~i~~l~k~ 247 (524)
T TIGR02987 191 YVSIISPASWLGDKTGENLREYIFNNRLINCI-QYFQEEAKLFSGVNQATSIIHLNSG 247 (524)
T ss_pred EEEEEEChHHhcCccHHHHHHHHHhCCeeEEE-EECCccccCcCCCCcceEEEEEECC
Confidence 98874333 22345665 4565555543 33322 22334567777764
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=89.85 E-value=0.22 Score=52.75 Aligned_cols=69 Identities=12% Similarity=0.012 Sum_probs=48.4
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc----ccceeccccccCCCCC-C---ccceeeec
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG----LVGTYTNWCEAMSTYP-R---TYDLIHAD 539 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg----li~~~~~~~e~~~~yp-~---t~Dlih~~ 539 (626)
.+++|++||.||++.++++..=-...|+++|.++.++..+.++- =+-.+|+....+..+. . ++|.|.++
T Consensus 21 ~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~D 97 (296)
T PRK00050 21 GIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEGLGKVDGILLD 97 (296)
T ss_pred CEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcCCCccCEEEEC
Confidence 37999999999999999976200136999999999999988762 2456664333332232 3 78987764
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.76 E-value=1.2 Score=48.06 Aligned_cols=93 Identities=18% Similarity=0.201 Sum_probs=61.0
Q ss_pred CCCCEEEEeCCC-CchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccc
Q 006905 210 GSIRTAIDTGCG-VASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 210 ~~~~~VLDIGCG-tG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l 285 (626)
+++.+|+=+|+| .|..+..+++. .|+++|. ++...+.|++.|....+.-.+.....--.+.||+|+..-.
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~-----~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~- 238 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITR-----SEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG- 238 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeC-----ChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-
Confidence 345588888877 34777777773 6777766 4456778888876554432222222211224999987442
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 006905 286 IPWNQFGGIYLIEVDRVLRPGGYWILSGPP 315 (626)
Q Consensus 286 ~h~~~~~~~~L~Ei~RvLKPGG~lvis~pp 315 (626)
...+....+.||+||.+++.+.+
T Consensus 239 -------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 -------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -------hhhHHHHHHHHhcCCEEEEECCC
Confidence 34677888999999999999854
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.44 E-value=1.7 Score=47.90 Aligned_cols=108 Identities=18% Similarity=0.240 Sum_probs=66.0
Q ss_pred cCCCCCCEEEEeCCCCchH----HHHHhhCC-cEEEeCCccchHHHHHHHHHHcCCCeEE-EEcccccCC---CCCCCee
Q 006905 207 LNDGSIRTAIDTGCGVASW----GAYLLSRN-IITMSFAPRDTHEAQVQFALERGVPALI-GVLAAERLP---YPSRAFD 277 (626)
Q Consensus 207 l~~~~~~~VLDIGCGtG~~----a~~La~~~-V~avdis~~dls~a~i~~A~erg~~~~~-~v~d~~~Lp---f~d~sFD 277 (626)
+.+.++.+|||+.+..|.= ++.|...+ |.+.|....- -....+.+.+.|+...+ ...|...+| |+. +||
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r-~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fD 314 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENR-LKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFD 314 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHH-HHHHHHHHHHhCCCceEEEccCcccccccccCc-ccc
Confidence 4566677999999999943 33334444 5566664422 23344455566776554 334555554 444 899
Q ss_pred EEE----ecc--ccc-----ccc----------ccHHHHHHHHHhcccCCeEEEEEeCCC
Q 006905 278 MAH----CSR--CLI-----PWN----------QFGGIYLIEVDRVLRPGGYWILSGPPI 316 (626)
Q Consensus 278 lV~----~~~--~l~-----h~~----------~~~~~~L~Ei~RvLKPGG~lvis~pp~ 316 (626)
-|. |+. ++. -+. .-+.++|......+++||+|+.++-.+
T Consensus 315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred eeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 998 444 110 000 011478888999999999999986433
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.26 E-value=3.8 Score=42.99 Aligned_cols=211 Identities=13% Similarity=0.054 Sum_probs=0.0
Q ss_pred CCCCCeeEEEecccccc---------------ccccHHHHHHHHHhcccCCeEEEEEeCCCCcccccccccchhhhhHHH
Q 006905 271 YPSRAFDMAHCSRCLIP---------------WNQFGGIYLIEVDRVLRPGGYWILSGPPINWKKHARGWQRTKEDLNKE 335 (626)
Q Consensus 271 f~d~sFDlV~~~~~l~h---------------~~~~~~~~L~Ei~RvLKPGG~lvis~pp~~w~~~~~~w~~~~e~l~~~ 335 (626)
+++++||+|++.....- +.+....+|.++.|+|||||.+++. ...+.+...
T Consensus 23 l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~--------------~~~~~~~~~ 88 (284)
T PRK11524 23 IPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM--------------NSTENMPFI 88 (284)
T ss_pred cccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE--------------cCchhhhHH
Q ss_pred HHHHHHHHHhhchhhhcccccEEEEeccCccccccccccCCCCCCCCCCCCCCchhhhhccccccccccCCccccccCCc
Q 006905 336 QTAIENVAKSLCWEKIKEKGDIAIWRKPINHLNCKTNQKLSQNPPFCPVQDPDKAWYTQMGTCLTRLPEVSSDRETAGGE 415 (626)
Q Consensus 336 ~~~ie~l~~~l~w~~v~~~~~~aiw~KP~~~~~c~~~~~~~~~p~~C~~~~~d~~wy~~l~~ci~~~p~~~~~~~~~~~~ 415 (626)
...++ ..+.-.+..||+|+.........-.....+-++-..+ ...|+.....+..+..............
T Consensus 89 ~~~~~---------~~f~~~~~iiW~k~~~~~~~~~~~~~~~e~i~~~~K~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 158 (284)
T PRK11524 89 DLYCR---------KLFTIKSRIVWSYDSSGVQAKKYFGSMYEPILMMVKD-AKNYTFNGDAILVEAKTGAKRALIDYRK 158 (284)
T ss_pred HHHHh---------cCcceEEEEEEEeCCCCCcccCcCCCCccEEEEEEcC-cccccccHHHhcccccccchhccccccc
Q ss_pred cccCCcccccCCCccccCcccCCChhhc-hhhhHHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEE
Q 006905 416 LAKWPQRLNAVPPRISKGTVKGITPEIF-QQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWV 494 (626)
Q Consensus 416 ~~~wp~rl~~~p~~~~~~~~~~~~~~~f-~~d~~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~ 494 (626)
...-+-.....|..+..-...+...+.+ .+-++.=..-+++...+...-+. .|||-=||+|+-+.+-.+.+-
T Consensus 159 ~~~~~~~~~~~~~~vw~~~~~~~~~~~~~~HPt~kP~~L~erlI~~~S~~GD-----~VLDPF~GSGTT~~AA~~lgR-- 231 (284)
T PRK11524 159 NPPQPYNTQKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGD-----IVLDPFAGSFTTGAVAKASGR-- 231 (284)
T ss_pred cccccCCCCCCCCCEEEeCCccccccccccCcccChHHHHHHHHHHhCCCCC-----EEEECCCCCcHHHHHHHHcCC--
Q ss_pred EEeccCccCcccHHHHHHh
Q 006905 495 MNVVPAEAKINTLGVIYER 513 (626)
Q Consensus 495 mnv~~~~~~~~~l~~~~~r 513 (626)
+.++++.++.-.+++.+|
T Consensus 232 -~~IG~Ei~~~Y~~~a~~R 249 (284)
T PRK11524 232 -KFIGIEINSEYIKMGLRR 249 (284)
T ss_pred -CEEEEeCCHHHHHHHHHH
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.11 E-value=0.43 Score=52.42 Aligned_cols=91 Identities=16% Similarity=0.194 Sum_probs=58.5
Q ss_pred eeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHh----ccc--ceec-cccccCCCCCCccceeeecccc
Q 006905 471 RNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYER----GLV--GTYT-NWCEAMSTYPRTYDLIHADSVF 542 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~r----gli--~~~~-~~~e~~~~yp~t~Dlih~~~~f 542 (626)
.+|||++||+|.++..++.. ++ -.|+.+|.+++.++.+.+. |+- .+++ |..+-+.. ...||+|..+- |
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~--~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~-~~~fD~V~lDP-~ 134 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGV--EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE-ERKFDVVDIDP-F 134 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh-cCCCCEEEECC-C
Confidence 36999999999999998654 42 3577788887777766543 231 1233 21111111 45799999853 3
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
+ +. ..+|...-+.+||||.+.++
T Consensus 135 ---G--s~-~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 ---G--SP-APFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ---C--Cc-HHHHHHHHHHhcCCCEEEEE
Confidence 1 11 34555546778999999997
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=88.93 E-value=0.2 Score=45.27 Aligned_cols=39 Identities=28% Similarity=0.520 Sum_probs=27.5
Q ss_pred CeeEEEecccc--ccc--cccH-HHHHHHHHhcccCCeEEEEEe
Q 006905 275 AFDMAHCSRCL--IPW--NQFG-GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 275 sFDlV~~~~~l--~h~--~~~~-~~~L~Ei~RvLKPGG~lvis~ 313 (626)
.||+|.|.-+. +|. .++. ..+|+.+.+.|+|||.|++.-
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 48999995543 232 2222 579999999999999999983
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=88.86 E-value=0.6 Score=49.30 Aligned_cols=125 Identities=17% Similarity=0.192 Sum_probs=70.4
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccc----eecc-ccccCCCC------CCccceeeec
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVG----TYTN-WCEAMSTY------PRTYDLIHAD 539 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~----~~~~-~~e~~~~y------p~t~Dlih~~ 539 (626)
++|||+=|-+|||+.+-+.-|. ..|+.+|.|...|+.+.+.--+. .-|. +++..-.| .+.||+|-++
T Consensus 125 krvLnlFsYTGgfsv~Aa~gGA--~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD 202 (286)
T PF10672_consen 125 KRVLNLFSYTGGFSVAAAAGGA--KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD 202 (286)
T ss_dssp CEEEEET-TTTHHHHHHHHTTE--SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred CceEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence 5899999999999998877776 25778899988888776653211 1111 12211111 2689998864
Q ss_pred c-ccccCCC--CCCHHHHHHHhhhhccCCcEEEEEcC------hHHHHHHHHHHHhCCCeeEEeecC
Q 006905 540 S-VFSLYKD--RCETEDILLEMDRILRPEGGVIFRDD------VDELVKVKRIIDALKWQSQIVDHE 597 (626)
Q Consensus 540 ~-~f~~~~~--~c~~~~~l~E~dRiLRPgG~~i~~d~------~~~~~~~~~~~~~l~w~~~~~~~e 597 (626)
= .|..... .=+...++.-.-++|+|||.+++.-. ...++.+++-+..++---+....+
T Consensus 203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~~a~~~~~~~~~~~p~ 269 (286)
T PF10672_consen 203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAEAAREVEFIERLGQPP 269 (286)
T ss_dssp -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHHHHHHCEEEEEEE---
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHHhCccceEeeeecccc
Confidence 2 2321110 01334577778899999999988632 123455555565544444443333
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=88.65 E-value=0.51 Score=48.78 Aligned_cols=96 Identities=11% Similarity=0.117 Sum_probs=55.9
Q ss_pred CCceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHH----HHhcc---cceec-cccccCCC------CCCc
Q 006905 468 GRYRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVI----YERGL---VGTYT-NWCEAMST------YPRT 532 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~----~~rgl---i~~~~-~~~e~~~~------yp~t 532 (626)
..-++||.+|+++|--|.+|+.- +- -.-|+.++..+....++ .+-|+ |.+.+ +..+.+.. +..+
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~-~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPE-DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCC-CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 34678999999999766666532 10 01245555554555543 33454 33333 22222222 3469
Q ss_pred cceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEE
Q 006905 533 YDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIF 570 (626)
Q Consensus 533 ~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~ 570 (626)
||+|-.+.- +-.....+...-+.|||||.+|+
T Consensus 157 fD~iFiDad------K~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 157 FDFIFVDAD------KDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred ccEEEecCC------HHHhHHHHHHHHHhcCCCeEEEE
Confidence 999988432 22344566666789999999887
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=88.27 E-value=3.9 Score=44.45 Aligned_cols=116 Identities=20% Similarity=0.236 Sum_probs=64.3
Q ss_pred HHHHHHHhhc---cCCCCCCEEEEeCCCCchHHHHHhhC--------CcEEEeCCccchHHHHHHHHHHcC-CC-eEEEE
Q 006905 197 YIDDIGKLIN---LNDGSIRTAIDTGCGVASWGAYLLSR--------NIITMSFAPRDTHEAQVQFALERG-VP-ALIGV 263 (626)
Q Consensus 197 yi~~L~~ll~---l~~~~~~~VLDIGCGtG~~a~~La~~--------~V~avdis~~dls~a~i~~A~erg-~~-~~~~v 263 (626)
|......+++ +.-.++.+|||+.+..|+=++.|.+. .+++-|+++.-++ ++.....+- .+ ..+..
T Consensus 138 ~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~--~L~~q~~~l~~~~~~v~~ 215 (375)
T KOG2198|consen 138 YRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLN--MLVHQLKRLPSPNLLVTN 215 (375)
T ss_pred hhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHH--HHHHHHhccCCcceeeec
Confidence 3344455554 33344569999999999877777663 3566677553332 222222321 11 12222
Q ss_pred cccccCC---------CCCCCeeEEEe-ccccc------------c-cc--------ccHHHHHHHHHhcccCCeEEEEE
Q 006905 264 LAAERLP---------YPSRAFDMAHC-SRCLI------------P-WN--------QFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 264 ~d~~~Lp---------f~d~sFDlV~~-~~~l~------------h-~~--------~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
.++...| .....||-|.| ..|-. . |. .-+-.+|..-.|+||+||.++.|
T Consensus 216 ~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYS 295 (375)
T KOG2198|consen 216 HDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYS 295 (375)
T ss_pred ccceeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEe
Confidence 2222222 23346999997 11100 0 11 11136889999999999999998
Q ss_pred eC
Q 006905 313 GP 314 (626)
Q Consensus 313 ~p 314 (626)
+-
T Consensus 296 TC 297 (375)
T KOG2198|consen 296 TC 297 (375)
T ss_pred cc
Confidence 64
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=88.25 E-value=0.86 Score=41.98 Aligned_cols=32 Identities=19% Similarity=0.392 Sum_probs=24.9
Q ss_pred EEEEeCCCCchHHHHHhhC----CcEEEeCCccchH
Q 006905 214 TAIDTGCGVASWGAYLLSR----NIITMSFAPRDTH 245 (626)
Q Consensus 214 ~VLDIGCGtG~~a~~La~~----~V~avdis~~dls 245 (626)
++||+|||.|.++..++.. .+++++..+....
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~ 36 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYE 36 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHH
Confidence 4899999999999888875 3777777764443
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.12 E-value=0.82 Score=45.76 Aligned_cols=100 Identities=20% Similarity=0.184 Sum_probs=52.1
Q ss_pred CEEEEeCCCCchHHHHHhhC----CcEEEeCCc--cchHHHHHHHHHHcC----CC-eEEEEcc-cccCC--CCCCC-ee
Q 006905 213 RTAIDTGCGVASWGAYLLSR----NIITMSFAP--RDTHEAQVQFALERG----VP-ALIGVLA-AERLP--YPSRA-FD 277 (626)
Q Consensus 213 ~~VLDIGCGtG~~a~~La~~----~V~avdis~--~dls~a~i~~A~erg----~~-~~~~v~d-~~~Lp--f~d~s-FD 277 (626)
-.+.|||||.|.+...|+.. -+.+++|-- .|.-.+.++..+... .+ +.....+ ..-+| |..+. +-
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLsk 141 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSK 141 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccccc
Confidence 36999999999999999887 456666522 122333444333211 11 1111111 11222 11111 22
Q ss_pred EEEecccccccc-------ccHHHHHHHHHhcccCCeEEEEEe
Q 006905 278 MAHCSRCLIPWN-------QFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 278 lV~~~~~l~h~~-------~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+.++..-- |+- .-...++.+..-+|++||.++...
T Consensus 142 mff~fpdp-Hfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 142 MFFLFPDP-HFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred ceeecCCh-hHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 22232221 111 111468899999999999999873
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.66 E-value=2.6 Score=45.73 Aligned_cols=100 Identities=18% Similarity=0.110 Sum_probs=63.7
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHH--c-C----CCeEEEEcccccC-CCCCCCeeEE
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALE--R-G----VPALIGVLAAERL-PYPSRAFDMA 279 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~e--r-g----~~~~~~v~d~~~L-pf~d~sFDlV 279 (626)
-+++|=+|.|.|--++.|.+. .++-+|++|.+++-+..+.... + + ..+.+..-|+..+ .-..+.||.|
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~v 369 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVV 369 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEE
Confidence 468999999999999999886 5788888776555333222211 1 1 1233444343332 2335589999
Q ss_pred EeccccccccccH-------HHHHHHHHhcccCCeEEEEEeC
Q 006905 280 HCSRCLIPWNQFG-------GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 280 ~~~~~l~h~~~~~-------~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+.-. +-+..+ ..+..-+.|.|+++|.+++...
T Consensus 370 IVDl---~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 370 IVDL---PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred EEeC---CCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 8733 111111 3677888999999999999753
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.32 E-value=0.16 Score=48.68 Aligned_cols=41 Identities=29% Similarity=0.363 Sum_probs=35.5
Q ss_pred CCccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 530 PRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 530 p~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
|+|.|+|-|.++..|+.-+ .-...+.|-.|+|||||++-|.
T Consensus 45 dns~d~iyaeHvlEHlt~~-Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 45 DNSVDAIYAEHVLEHLTYD-EGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred CcchHHHHHHHHHHHHhHH-HHHHHHHHHHHHhCcCcEEEEE
Confidence 6999999999999987653 3357899999999999999986
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=87.13 E-value=2.1 Score=43.30 Aligned_cols=108 Identities=15% Similarity=0.262 Sum_probs=72.8
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceeccccccCCCC-----C-Cccceeeecccccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTY-----P-RTYDLIHADSVFSL 544 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~y-----p-~t~Dlih~~~~f~~ 544 (626)
-.+||+||=....+.. ..+ | .+|+++|.. .+-+-|.+ .+|... + ..||+|.++.|+.+
T Consensus 53 lrlLEVGals~~N~~s--~~~-~-fdvt~IDLn-s~~~~I~q-----------qDFm~rplp~~~~e~FdvIs~SLVLNf 116 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS--TSG-W-FDVTRIDLN-SQHPGILQ-----------QDFMERPLPKNESEKFDVISLSLVLNF 116 (219)
T ss_pred ceEEeecccCCCCccc--ccC-c-eeeEEeecC-CCCCCcee-----------eccccCCCCCCcccceeEEEEEEEEee
Confidence 4699999874433222 222 2 369999987 33232222 233333 2 79999999999998
Q ss_pred CCCCCCHHHHHHHhhhhccCCcE-----EEEEcCh-------H-HHHHHHHHHHhCCCeeEEe
Q 006905 545 YKDRCETEDILLEMDRILRPEGG-----VIFRDDV-------D-ELVKVKRIIDALKWQSQIV 594 (626)
Q Consensus 545 ~~~~c~~~~~l~E~dRiLRPgG~-----~i~~d~~-------~-~~~~~~~~~~~l~w~~~~~ 594 (626)
..+--..-..|.-..+.|||+|. ++|--+. . ..+.++.|+.+|.....-.
T Consensus 117 VP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~ 179 (219)
T PF11968_consen 117 VPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKY 179 (219)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEE
Confidence 87644556789999999999999 5553221 1 2568889999999986643
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=87.13 E-value=2.1 Score=45.93 Aligned_cols=98 Identities=8% Similarity=0.063 Sum_probs=60.5
Q ss_pred eEEeccCchhhHhhhhhC----CCeEEEEeccCccCcccHHHHHHhcccc-----eeccccccCCC---------CCCcc
Q 006905 472 NILDMNAHLGGFAAALID----FPVWVMNVVPAEAKINTLGVIYERGLVG-----TYTNWCEAMST---------YPRTY 533 (626)
Q Consensus 472 ~vlD~g~g~G~faa~l~~----~~v~~mnv~~~~~~~~~l~~~~~rgli~-----~~~~~~e~~~~---------yp~t~ 533 (626)
.++|+|||.|.=.+.|++ .+. ....+|+|.|.+.|+.+.++-.-. .++..|..|.. .+...
T Consensus 79 ~lIELGsG~~~Kt~~LL~aL~~~~~-~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~ 157 (319)
T TIGR03439 79 MLVELGSGNLRKVGILLEALERQKK-SVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRP 157 (319)
T ss_pred EEEEECCCchHHHHHHHHHHHhcCC-CceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCc
Confidence 699999999987665543 211 127899999999998877654311 11122333311 11122
Q ss_pred ce-eeeccccccCCCCCCHHHHHHHhhh-hccCCcEEEEE
Q 006905 534 DL-IHADSVFSLYKDRCETEDILLEMDR-ILRPEGGVIFR 571 (626)
Q Consensus 534 Dl-ih~~~~f~~~~~~c~~~~~l~E~dR-iLRPgG~~i~~ 571 (626)
.+ ++-...|.+.... ....+|.+|.+ .|+|||.++|.
T Consensus 158 r~~~flGSsiGNf~~~-ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 158 TTILWLGSSIGNFSRP-EAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred cEEEEeCccccCCCHH-HHHHHHHHHHHhhCCCCCEEEEe
Confidence 32 3333455554432 33579999999 99999999995
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=86.93 E-value=0.74 Score=46.08 Aligned_cols=108 Identities=12% Similarity=0.134 Sum_probs=55.0
Q ss_pred hchhhhHHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhC--CCeEEEEeccCccCcccHHH---HHHh-cc
Q 006905 442 IFQQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALID--FPVWVMNVVPAEAKINTLGV---IYER-GL 515 (626)
Q Consensus 442 ~f~~d~~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~--~~v~~mnv~~~~~~~~~l~~---~~~r-gl 515 (626)
.|.......+.++.. .+.+ -.+|+||-||.|.|+-.+++ ++. .|.+.|..+...+. +.++ ++
T Consensus 83 yfs~rl~~Er~Ri~~------~v~~---~e~VlD~faGIG~f~l~~ak~~~~~---~V~A~d~Np~a~~~L~~Ni~lNkv 150 (200)
T PF02475_consen 83 YFSPRLSTERRRIAN------LVKP---GEVVLDMFAGIGPFSLPIAKHGKAK---RVYAVDLNPDAVEYLKENIRLNKV 150 (200)
T ss_dssp ---GGGHHHHHHHHT------C--T---T-EEEETT-TTTTTHHHHHHHT-SS---EEEEEES-HHHHHHHHHHHHHTT-
T ss_pred EEccccHHHHHHHHh------cCCc---ceEEEEccCCccHHHHHHhhhcCcc---EEEEecCCHHHHHHHHHHHHHcCC
Confidence 344444455555532 2334 46899999999999999987 554 46666665444432 2222 22
Q ss_pred ---cceeccccccCCCCCCccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEE
Q 006905 516 ---VGTYTNWCEAMSTYPRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVI 569 (626)
Q Consensus 516 ---i~~~~~~~e~~~~yp~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i 569 (626)
|-.++.=|..|.. ...||-|.+ .+...+ ...|.+..+++|+||.+=
T Consensus 151 ~~~i~~~~~D~~~~~~-~~~~drvim-----~lp~~~--~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 151 ENRIEVINGDAREFLP-EGKFDRVIM-----NLPESS--LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp TTTEEEEES-GGG----TT-EEEEEE-------TSSG--GGGHHHHHHHEEEEEEEE
T ss_pred CCeEEEEcCCHHHhcC-ccccCEEEE-----CChHHH--HHHHHHHHHHhcCCcEEE
Confidence 2233321222322 478886655 222211 357888899999999863
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=86.75 E-value=0.48 Score=45.72 Aligned_cols=42 Identities=24% Similarity=0.351 Sum_probs=34.0
Q ss_pred CCCeeEEEeccccccccc-------cH---HHHHHHHHhcccCCeEEEEEeC
Q 006905 273 SRAFDMAHCSRCLIPWNQ-------FG---GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 273 d~sFDlV~~~~~l~h~~~-------~~---~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.++||.+.|..+++|..- ++ ...+.++.++|||||.|+++.|
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vP 112 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVP 112 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEee
Confidence 468999999888877531 11 4789999999999999999876
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=86.69 E-value=0.37 Score=48.27 Aligned_cols=89 Identities=24% Similarity=0.359 Sum_probs=62.5
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceec--cccccCCCCCCc---cceeeecccc
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYT--NWCEAMSTYPRT---YDLIHADSVF 542 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~--~~~e~~~~yp~t---~Dlih~~~~f 542 (626)
..--++||+|||-|-..-.|+..= -.|-+++.|..|....-..+. .++. +|- +| ||+|-|-.++
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~kk~y-nVl~~~ew~-------~t~~k~dli~clNlL 179 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKKKNY-NVLTEIEWL-------QTDVKLDLILCLNLL 179 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhhcCC-ceeeehhhh-------hcCceeehHHHHHHH
Confidence 445789999999999888876541 125566677666666666665 2221 222 44 9999994444
Q ss_pred ccCCCCCCHH-HHHHHhhhhccC-CcEEEEE
Q 006905 543 SLYKDRCETE-DILLEMDRILRP-EGGVIFR 571 (626)
Q Consensus 543 ~~~~~~c~~~-~~l~E~dRiLRP-gG~~i~~ 571 (626)
+||.-+ .+|.++.-||+| .|.+|+.
T Consensus 180 ----DRc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 180 ----DRCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred ----HhhcChHHHHHHHHHHhccCCCcEEEE
Confidence 577655 588899999999 9999986
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=86.65 E-value=4 Score=38.61 Aligned_cols=81 Identities=19% Similarity=0.253 Sum_probs=45.3
Q ss_pred cEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCC-C-CCCCeeEEEeccccccccccH--------HHHHHHHHh
Q 006905 234 IITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLP-Y-PSRAFDMAHCSRCLIPWNQFG--------GIYLIEVDR 301 (626)
Q Consensus 234 V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lp-f-~d~sFDlV~~~~~l~h~~~~~--------~~~L~Ei~R 301 (626)
|.+.|+-...+......+. +.+. .+.+...+=+.+. + +.+.+|+|+.|....+-.+.. -.++..+.+
T Consensus 2 VyaFDIQ~~Ai~~T~~rL~-~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 2 VYAFDIQEEAIENTRERLE-EAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEES-HHHHHHHHHHHH-HTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHHH-hcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 5677876544443333333 2333 2444443323333 2 235899999988765543321 378999999
Q ss_pred cccCCeEEEEEeCC
Q 006905 302 VLRPGGYWILSGPP 315 (626)
Q Consensus 302 vLKPGG~lvis~pp 315 (626)
+|+|||.+.+...+
T Consensus 81 lL~~gG~i~iv~Y~ 94 (140)
T PF06962_consen 81 LLKPGGIITIVVYP 94 (140)
T ss_dssp HEEEEEEEEEEE--
T ss_pred hhccCCEEEEEEeC
Confidence 99999999998753
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=86.21 E-value=1.7 Score=46.48 Aligned_cols=129 Identities=18% Similarity=0.196 Sum_probs=68.2
Q ss_pred HHhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHH----hcc---cceeccccccCCCCC
Q 006905 458 KTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYE----RGL---VGTYTNWCEAMSTYP 530 (626)
Q Consensus 458 ~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~----rgl---i~~~~~~~e~~~~yp 530 (626)
..++.+-.. -.-|.|||+|||.|-+...-+.-|. -.|-+++++ +|-+.+.. ..| |.+.-+=-|.. ..|
T Consensus 167 ~Ail~N~sD-F~~kiVlDVGaGSGILS~FAaqAGA--~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdi-eLP 241 (517)
T KOG1500|consen 167 RAILENHSD-FQDKIVLDVGAGSGILSFFAAQAGA--KKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDI-ELP 241 (517)
T ss_pred HHHHhcccc-cCCcEEEEecCCccHHHHHHHHhCc--ceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccc-cCc
Confidence 344554444 5578899999999976544443333 135566777 77664422 111 22222111221 257
Q ss_pred CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC-------hHHHHHHHHHHHhCCCeeE
Q 006905 531 RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDD-------VDELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 531 ~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~-------~~~~~~~~~~~~~l~w~~~ 592 (626)
.-.|+|-+--+=..+-+.-.++..| -..|.|+|.|...=+-. .+..--++..-+.+-|--.
T Consensus 242 Ek~DviISEPMG~mL~NERMLEsYl-~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnFWyQq 309 (517)
T KOG1500|consen 242 EKVDVIISEPMGYMLVNERMLESYL-HARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANFWYQQ 309 (517)
T ss_pred hhccEEEeccchhhhhhHHHHHHHH-HHHhhcCCCCcccCcccceeecccchHHHHHHHHhhhhhhhhh
Confidence 8889887632211222211223222 34599999998865421 1333455666677777543
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.05 E-value=0.57 Score=45.28 Aligned_cols=116 Identities=19% Similarity=0.261 Sum_probs=73.0
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCc---ccHHHHHHhcc----cceec---cccccCCCC-CCccceeee
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKI---NTLGVIYERGL----VGTYT---NWCEAMSTY-PRTYDLIHA 538 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~---~~l~~~~~rgl----i~~~~---~~~e~~~~y-p~t~Dlih~ 538 (626)
-|.||.+|+|+-|.|.-|+...+-+-.|--+|+.+ ..++-+..+.. -..-| .|-.+.+.- -.|||+|.|
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 46799999999999999876544333444445432 23444444442 11101 222333333 379999998
Q ss_pred ccccccCCCCCCH-----HHHHHHhhhhccCCcEEEEEcCh--HHHHHHHHHHHhCCCeeEE
Q 006905 539 DSVFSLYKDRCET-----EDILLEMDRILRPEGGVIFRDDV--DELVKVKRIIDALKWQSQI 593 (626)
Q Consensus 539 ~~~f~~~~~~c~~-----~~~l~E~dRiLRPgG~~i~~d~~--~~~~~~~~~~~~l~w~~~~ 593 (626)
+.|.. +.++.-+.+.|||.|..++..+. +.+++..+.+...-..+.+
T Consensus 110 --------ADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~gf~v~l 163 (201)
T KOG3201|consen 110 --------ADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVGFTVCL 163 (201)
T ss_pred --------ccchhHHHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhceeEEEe
Confidence 45543 46888899999999999987654 5677777766665554443
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=85.73 E-value=0.79 Score=49.30 Aligned_cols=99 Identities=20% Similarity=0.184 Sum_probs=55.4
Q ss_pred EEeccCchhhHhhhhhCCCeEE--EEeccCccCcccHHHH--HHhcccceeccc-----cccCCCCC--Cccceeeeccc
Q 006905 473 ILDMNAHLGGFAAALIDFPVWV--MNVVPAEAKINTLGVI--YERGLVGTYTNW-----CEAMSTYP--RTYDLIHADSV 541 (626)
Q Consensus 473 vlD~g~g~G~faa~l~~~~v~~--mnv~~~~~~~~~l~~~--~~rgli~~~~~~-----~e~~~~yp--~t~Dlih~~~~ 541 (626)
+||+|+|.|..+-| ..++|- -+++-++.++....++ .++..+....+| -+..+.+| ..|+|+-+..-
T Consensus 117 iLDvG~GPgtgl~A--~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~e 194 (484)
T COG5459 117 ILDVGAGPGTGLWA--LNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLDE 194 (484)
T ss_pred hhccCCCCchhhhh--hcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhhh
Confidence 99999999976444 444451 1233333442222222 234444444455 34455566 88887665433
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
+-+-+..=.+...+...=-+|+|||.++|-+.
T Consensus 195 Ll~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 195 LLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred hccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 33333322344455556678999999999764
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=85.65 E-value=2.2 Score=42.34 Aligned_cols=90 Identities=17% Similarity=0.200 Sum_probs=52.2
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEc-cccc--------CCCCCCCee
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVPALIGVL-AAER--------LPYPSRAFD 277 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~~~~~v~-d~~~--------Lpf~d~sFD 277 (626)
+.+|||+||..|+|+.-..++ -|.++|+-.. ..-.|.. +..+ |..+ ...|+...|
T Consensus 70 ~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~---------~p~~Ga~--~i~~~dvtdp~~~~ki~e~lp~r~Vd 138 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI---------EPPEGAT--IIQGNDVTDPETYRKIFEALPNRPVD 138 (232)
T ss_pred CCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec---------cCCCCcc--cccccccCCHHHHHHHHHhCCCCccc
Confidence 569999999999999888776 3667776321 1122321 1111 1110 013567899
Q ss_pred EEEeccccccc----cccH------HHHHHHHHhcccCCeEEEEE
Q 006905 278 MAHCSRCLIPW----NQFG------GIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 278 lV~~~~~l~h~----~~~~------~~~L~Ei~RvLKPGG~lvis 312 (626)
+|++-..-..- .+.. ..+|.-....++|+|.|+.-
T Consensus 139 vVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK 183 (232)
T KOG4589|consen 139 VVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK 183 (232)
T ss_pred EEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE
Confidence 99985432111 0100 23444555678899999986
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=85.61 E-value=4.5 Score=40.65 Aligned_cols=115 Identities=18% Similarity=0.125 Sum_probs=66.8
Q ss_pred EEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcc-cccCCCCCCCeeEEEecccccc
Q 006905 215 AIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV--PALIGVLA-AERLPYPSRAFDMAHCSRCLIP 287 (626)
Q Consensus 215 VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d-~~~Lpf~d~sFDlV~~~~~l~h 287 (626)
|.||||--|.++.+|.++ .++++|+.+.-+..+....+ ..+. .+.+..+| ...++ +.+..|.|+.+..=
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~-~~~l~~~i~~rlgdGL~~l~-~~e~~d~ivIAGMG-- 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIA-KYGLEDRIEVRLGDGLEVLK-PGEDVDTIVIAGMG-- 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHH-HTT-TTTEEEEE-SGGGG---GGG---EEEEEEE---
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH-HcCCcccEEEEECCcccccC-CCCCCCEEEEecCC--
Confidence 689999999999999997 58899998866655554444 3443 35556666 34443 22237888765532
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeCCCCcccccccccchhhhhHHHHHHHHHHHHhhchhhhcc
Q 006905 288 WNQFGGIYLIEVDRVLRPGGYWILSGPPINWKKHARGWQRTKEDLNKEQTAIENVAKSLCWEKIKE 353 (626)
Q Consensus 288 ~~~~~~~~L~Ei~RvLKPGG~lvis~pp~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v~~ 353 (626)
. .--...|.+....++..-.|++.-. . ....++..+...+|..+.+
T Consensus 77 G-~lI~~ILe~~~~~~~~~~~lILqP~-~------------------~~~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 77 G-ELIIEILEAGPEKLSSAKRLILQPN-T------------------HAYELRRWLYENGFEIIDE 122 (205)
T ss_dssp H-HHHHHHHHHTGGGGTT--EEEEEES-S-------------------HHHHHHHHHHTTEEEEEE
T ss_pred H-HHHHHHHHhhHHHhccCCeEEEeCC-C------------------ChHHHHHHHHHCCCEEEEe
Confidence 1 1114667777777777677887621 0 1234666777778866644
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=85.43 E-value=5.9 Score=41.68 Aligned_cols=100 Identities=10% Similarity=0.142 Sum_probs=53.6
Q ss_pred CCEEEEeCCCCchHHHHHhhC------CcEEEeCCccchHHHHHHHHH---HcCCCeEEEEcccccCCCCCCCeeEEEec
Q 006905 212 IRTAIDTGCGVASWGAYLLSR------NIITMSFAPRDTHEAQVQFAL---ERGVPALIGVLAAERLPYPSRAFDMAHCS 282 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~------~V~avdis~~dls~a~i~~A~---erg~~~~~~v~d~~~Lpf~d~sFDlV~~~ 282 (626)
.++|+=||+|.=-++..+... .++.+|+++.....+ .+... ..+....+..+|....+..-..||+|+.+
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a-~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELA-RRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHH-HHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHH-HHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 469999999987666655442 366778866333222 12222 12344677777766666555689999976
Q ss_pred cccccccc-cHHHHHHHHHhcccCCeEEEEEe
Q 006905 283 RCLIPWNQ-FGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 283 ~~l~h~~~-~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
... .... +-..+|..+.+.++||..+++..
T Consensus 200 alV-g~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 200 ALV-GMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp TT--S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hhc-ccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 644 3222 33789999999999999999974
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=85.15 E-value=0.99 Score=45.96 Aligned_cols=91 Identities=16% Similarity=0.288 Sum_probs=57.1
Q ss_pred CCEEEEeCCCCchHHHHHhhC-------------CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCC--------
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-------------NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLP-------- 270 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-------------~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lp-------- 270 (626)
..+++|+.+..|+|...|.++ .++++|+-+... -.| +...++|.....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP---------I~G--V~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP---------IEG--VIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc---------cCc--eEEeecccCCHhHHHHHHHH
Confidence 458999999999999888764 277888755211 112 233344432221
Q ss_pred CCCCCeeEEEecccc-----ccccccH-----HHHHHHHHhcccCCeEEEEEe
Q 006905 271 YPSRAFDMAHCSRCL-----IPWNQFG-----GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 271 f~d~sFDlV~~~~~l-----~h~~~~~-----~~~L~Ei~RvLKPGG~lvis~ 313 (626)
|.....|+|+|-.+- |.+.+.. ..+|.-..++|||||.|+--.
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKi 163 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKI 163 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhh
Confidence 445689999995542 2221111 245666789999999998753
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=85.01 E-value=0.71 Score=46.35 Aligned_cols=132 Identities=22% Similarity=0.304 Sum_probs=70.6
Q ss_pred ceeEEeccCchhhHhhhhhCC---C--eEEEEeccCccCcccHHHHHHhcccc---eeccccccCCCCC-Cccceeeecc
Q 006905 470 YRNILDMNAHLGGFAAALIDF---P--VWVMNVVPAEAKINTLGVIYERGLVG---TYTNWCEAMSTYP-RTYDLIHADS 540 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~---~--v~~mnv~~~~~~~~~l~~~~~rgli~---~~~~~~e~~~~yp-~t~Dlih~~~ 540 (626)
.-.|+|+||-.||+.-.++++ . |...-+.|++..++ +.+=+|-|. +....-|. .+ ..+|+|-++.
T Consensus 46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~---V~~iq~d~~~~~~~~~l~~~---l~~~~~DvV~sD~ 119 (205)
T COG0293 46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPG---VIFLQGDITDEDTLEKLLEA---LGGAPVDVVLSDM 119 (205)
T ss_pred CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCC---ceEEeeeccCccHHHHHHHH---cCCCCcceEEecC
Confidence 446999999999998877654 2 56666777766533 222122111 11111111 23 3368777655
Q ss_pred ccccCCCC-------CCHHHHHHHh-hhhccCCcEEEEE-----cChHHHHHHHHHHHhCCCeeEEeecCC-CCCCcceE
Q 006905 541 VFSLYKDR-------CETEDILLEM-DRILRPEGGVIFR-----DDVDELVKVKRIIDALKWQSQIVDHED-GPLEREKL 606 (626)
Q Consensus 541 ~f~~~~~~-------c~~~~~l~E~-dRiLRPgG~~i~~-----d~~~~~~~~~~~~~~l~w~~~~~~~e~-~~~~~e~~ 606 (626)
.=.....+ -.+..+.+|| .++|+|||.|++- +..+.+..+++.++.+. ++-... -+..+|-.
T Consensus 120 ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~v~----~~KP~aSR~~S~E~y 195 (205)
T COG0293 120 APNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKVK----IFKPKASRKRSREIY 195 (205)
T ss_pred CCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhhceeE----EecCccccCCCceEE
Confidence 43211111 1122355666 5799999999995 34456666666655443 322111 11235777
Q ss_pred EEEEe
Q 006905 607 LFAVK 611 (626)
Q Consensus 607 l~~~K 611 (626)
++|.+
T Consensus 196 ~v~~~ 200 (205)
T COG0293 196 LVAKG 200 (205)
T ss_pred EEEec
Confidence 77754
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=84.96 E-value=0.34 Score=43.81 Aligned_cols=60 Identities=18% Similarity=0.223 Sum_probs=34.8
Q ss_pred cceeeeccccc--cCCC-CCCHHHHHHHhhhhccCCcEEEEEcC--------hHHHHHHHHHHHhCCCeeE
Q 006905 533 YDLIHADSVFS--LYKD-RCETEDILLEMDRILRPEGGVIFRDD--------VDELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 533 ~Dlih~~~~f~--~~~~-~c~~~~~l~E~dRiLRPgG~~i~~d~--------~~~~~~~~~~~~~l~w~~~ 592 (626)
||+|-|-.|-- |+.+ ...+..++..|.+.|||||.+|+--+ ......+.+-.++|.+.-.
T Consensus 2 yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP~ 72 (110)
T PF06859_consen 2 YDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKLRPD 72 (110)
T ss_dssp EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH----GG
T ss_pred ccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEEChH
Confidence 88888822211 2221 24566789999999999999999532 2234566666777776543
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=84.83 E-value=2.2 Score=43.48 Aligned_cols=89 Identities=13% Similarity=0.123 Sum_probs=49.0
Q ss_pred ccCCCCC-Cccceeeeccccc----cCCCC--------CCHHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHhCCCe
Q 006905 524 EAMSTYP-RTYDLIHADSVFS----LYKDR--------CETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQ 590 (626)
Q Consensus 524 e~~~~yp-~t~Dlih~~~~f~----~~~~~--------c~~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~l~w~ 590 (626)
|-+..+| ++.|||-++==+. ....+ .-++.++.|+.|||||||.+++--....+..+...++...|.
T Consensus 11 e~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~~~~~~~al~~~GF~ 90 (227)
T PRK13699 11 DVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFS 90 (227)
T ss_pred HHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccccHHHHHHHHHHCCCE
Confidence 4455677 8888877762211 00010 113468999999999999998642222233444455555554
Q ss_pred eE---EeecCCC------CCCcceEEEEEec
Q 006905 591 SQ---IVDHEDG------PLEREKLLFAVKL 612 (626)
Q Consensus 591 ~~---~~~~e~~------~~~~e~~l~~~K~ 612 (626)
.. +-+..+. ....|.++++.|.
T Consensus 91 l~~~IiW~K~~~~~~~~~~~~~E~i~~~~k~ 121 (227)
T PRK13699 91 VVGHLVFTKNYTSKAAYVGYRHECAYILAKG 121 (227)
T ss_pred EeeEEEEECCCCCCCCCCccceeEEEEEECC
Confidence 33 2222211 1234788888875
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=84.68 E-value=8.7 Score=38.70 Aligned_cols=135 Identities=17% Similarity=0.288 Sum_probs=89.4
Q ss_pred ceeEEeccCchhhHhhhhhCC---C-eEEEEeccCccCcccHHHHHHhc-ccceeccccccCCCCCCcccee--eecccc
Q 006905 470 YRNILDMNAHLGGFAAALIDF---P-VWVMNVVPAEAKINTLGVIYERG-LVGTYTNWCEAMSTYPRTYDLI--HADSVF 542 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~---~-v~~mnv~~~~~~~~~l~~~~~rg-li~~~~~~~e~~~~yp~t~Dli--h~~~~f 542 (626)
-..||=+||-.|+-..+..+- | ++.+-++|.-.. ..|.++-+|- ++.++-| ..+|.+|-.+ |.+.+|
T Consensus 77 g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~r-eLl~~a~~R~Ni~PIL~D-----A~~P~~Y~~~Ve~VDviy 150 (231)
T COG1889 77 GSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMR-ELLDVAEKRPNIIPILED-----ARKPEKYRHLVEKVDVIY 150 (231)
T ss_pred CCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHH-HHHHHHHhCCCceeeecc-----cCCcHHhhhhcccccEEE
Confidence 446999999999999888653 5 688889988886 8888888875 5777776 5677655432 334445
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEEE----------cChHHHHHHHHHHHhCCCeeE-EeecCCCCCCcceEEEEEe
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIFR----------DDVDELVKVKRIIDALKWQSQ-IVDHEDGPLEREKLLFAVK 611 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~~----------d~~~~~~~~~~~~~~l~w~~~-~~~~e~~~~~~e~~l~~~K 611 (626)
.....+-..+-+..-++.-|++||++++. |+.++..+-.+.+..=..++. ..+.| |..++-++|..|
T Consensus 151 ~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~Le--Pye~DH~~i~~~ 228 (231)
T COG1889 151 QDVAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVDLE--PYEKDHALIVAK 228 (231)
T ss_pred EecCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEEeccC--CcccceEEEEEe
Confidence 55445444455778889999999999885 444554433333333334443 33444 666777777665
Q ss_pred c
Q 006905 612 L 612 (626)
Q Consensus 612 ~ 612 (626)
.
T Consensus 229 ~ 229 (231)
T COG1889 229 Y 229 (231)
T ss_pred e
Confidence 3
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=84.29 E-value=15 Score=36.52 Aligned_cols=144 Identities=13% Similarity=0.172 Sum_probs=75.9
Q ss_pred hhhHHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCC---CeEEEEeccCccCcc----cHHHHHHhcc-c
Q 006905 445 QNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDF---PVWVMNVVPAEAKIN----TLGVIYERGL-V 516 (626)
Q Consensus 445 ~d~~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~---~v~~mnv~~~~~~~~----~l~~~~~rgl-i 516 (626)
||+..=-.-++.=.+. |.. -....+|++|||+|-..+.|++. ++. .+.+|..+. |++.+.-.+. |
T Consensus 23 EDTFlLlDaLekd~~e---L~~-~~~~i~lEIG~GSGvvstfL~~~i~~~~~---~latDiNp~A~~~Tl~TA~~n~~~~ 95 (209)
T KOG3191|consen 23 EDTFLLLDALEKDAAE---LKG-HNPEICLEIGCGSGVVSTFLASVIGPQAL---YLATDINPEALEATLETARCNRVHI 95 (209)
T ss_pred chhhHHHHHHHHHHHH---Hhh-cCceeEEEecCCcchHHHHHHHhcCCCce---EEEecCCHHHHHHHHHHHHhcCCcc
Confidence 4555544444432222 222 23567999999999999999875 332 334454433 3333433332 2
Q ss_pred ceec-cccccCCCCCCccceeeecccc--------------ccCC----CCCCHHHHHHHhhhhccCCcEEEEEcC-hHH
Q 006905 517 GTYT-NWCEAMSTYPRTYDLIHADSVF--------------SLYK----DRCETEDILLEMDRILRPEGGVIFRDD-VDE 576 (626)
Q Consensus 517 ~~~~-~~~e~~~~yp~t~Dlih~~~~f--------------~~~~----~~c~~~~~l~E~dRiLRPgG~~i~~d~-~~~ 576 (626)
.++. |.-..+. +++.|++.-+-=+ +.|. .|--+..+|--++-||-|-|.+++--- ...
T Consensus 96 ~~V~tdl~~~l~--~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~ 173 (209)
T KOG3191|consen 96 DVVRTDLLSGLR--NESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANK 173 (209)
T ss_pred ceeehhHHhhhc--cCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcC
Confidence 2221 2222222 2666654322211 1111 111234577778888899999998432 223
Q ss_pred HHHHHHHHHhCCCeeEEeecC
Q 006905 577 LVKVKRIIDALKWQSQIVDHE 597 (626)
Q Consensus 577 ~~~~~~~~~~l~w~~~~~~~e 597 (626)
..+|-++++.-.|..++....
T Consensus 174 p~ei~k~l~~~g~~~~~~~~R 194 (209)
T KOG3191|consen 174 PKEILKILEKKGYGVRIAMQR 194 (209)
T ss_pred HHHHHHHHhhcccceeEEEEE
Confidence 445555777888888765433
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=83.72 E-value=1.7 Score=39.33 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=25.4
Q ss_pred CCEEEEeCCCCchHHHHHhhCCcEEEeCCc
Q 006905 212 IRTAIDTGCGVASWGAYLLSRNIITMSFAP 241 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~~V~avdis~ 241 (626)
.....|||||+|-+..-|.+.+..+.+++.
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~ 88 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGYPGWGIDA 88 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCCCcccccc
Confidence 457999999999999999998888877733
|
; GO: 0008168 methyltransferase activity |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=82.74 E-value=0.78 Score=44.48 Aligned_cols=112 Identities=17% Similarity=0.263 Sum_probs=57.6
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-------cceec-cccccCCCCC--Cccceeeec-
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-------VGTYT-NWCEAMSTYP--RTYDLIHAD- 539 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-------i~~~~-~~~e~~~~yp--~t~Dlih~~- 539 (626)
++|+|+-||.||-+-.++...- .|+.+|..+..+..+....- |-.++ ||-+-..... ..||.|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~---~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD---RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 4799999999999999999853 68888888778876655432 22333 4444444443 238998864
Q ss_pred ----------cccccCC--CCCCHHHHHHHhhhhccCCcEEEEE-cChHHHHHHHHHHHhCC
Q 006905 540 ----------SVFSLYK--DRCETEDILLEMDRILRPEGGVIFR-DDVDELVKVKRIIDALK 588 (626)
Q Consensus 540 ----------~~f~~~~--~~c~~~~~l~E~dRiLRPgG~~i~~-d~~~~~~~~~~~~~~l~ 588 (626)
.+|.... ...++.+++..+-++-+ -+++- -...-+..|.+++..+.
T Consensus 78 PWGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t~---nv~l~LPRn~dl~ql~~~~~~l~ 136 (163)
T PF09445_consen 78 PWGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKITP---NVVLFLPRNSDLNQLSQLTRELF 136 (163)
T ss_dssp -BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH-S----EEEEEETTB-HHHHHHT----T
T ss_pred CCCCccccccCccCHHHccCCCCHHHHHHHHHhhCC---CEEEEeCCCCCHHHHHHHhcccc
Confidence 2454422 22356677777666642 23332 22223455555544443
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=81.46 E-value=1.7 Score=42.53 Aligned_cols=120 Identities=13% Similarity=0.214 Sum_probs=67.1
Q ss_pred CCceeEEeccCchhhHh--hhhhCCCeE------EEEeccCccCcccHHHHHHhc----c---cceeccc-cccCCCCCC
Q 006905 468 GRYRNILDMNAHLGGFA--AALIDFPVW------VMNVVPAEAKINTLGVIYERG----L---VGTYTNW-CEAMSTYPR 531 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~fa--a~l~~~~v~------~mnv~~~~~~~~~l~~~~~rg----l---i~~~~~~-~e~~~~yp~ 531 (626)
..-..|||==||+|++. |++...++. ...+.+.|..++++..+.+.- + |.... | ...+...+.
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~-~D~~~l~~~~~ 105 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQ-WDARELPLPDG 105 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE---GGGGGGTTS
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEe-cchhhcccccC
Confidence 33457999999999997 344333331 123668888888887655432 2 12221 1 122222238
Q ss_pred ccceeeeccccccCCC-C----CCHHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHhCCCeeE
Q 006905 532 TYDLIHADSVFSLYKD-R----CETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 532 t~Dlih~~~~f~~~~~-~----c~~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~l~w~~~ 592 (626)
++|.|-++-=|..-.. . -....++.|+.|+|+|...++++...+. .+.+....|+..
T Consensus 106 ~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~~~----~~~~~~~~~~~~ 167 (179)
T PF01170_consen 106 SVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNREL----EKALGLKGWRKR 167 (179)
T ss_dssp BSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCCCH----HHHHTSTTSEEE
T ss_pred CCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHH----HHHhcchhhceE
Confidence 9999999766653211 0 1123478999999999666667766643 444444466654
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=81.37 E-value=2.9 Score=40.84 Aligned_cols=108 Identities=11% Similarity=0.091 Sum_probs=70.7
Q ss_pred hhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccce-----ec-cccccCCCCC-Cc
Q 006905 460 MNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGT-----YT-NWCEAMSTYP-RT 532 (626)
Q Consensus 460 ~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~-----~~-~~~e~~~~yp-~t 532 (626)
++..+.+ .+--+||.+|.|+|-|..+++++++---++..++.+++......++ ..++ -. +.-......+ .-
T Consensus 40 M~s~I~p-esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~-~p~~~ii~gda~~l~~~l~e~~gq~ 117 (194)
T COG3963 40 MASVIDP-ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL-YPGVNIINGDAFDLRTTLGEHKGQF 117 (194)
T ss_pred HHhccCc-ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh-CCCccccccchhhHHHHHhhcCCCe
Confidence 3445667 7778999999999999999999988766788888776665543332 1111 11 1111223345 77
Q ss_pred cceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEE
Q 006905 533 YDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIF 570 (626)
Q Consensus 533 ~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~ 570 (626)
||.|-|..=|-...-+ ---.+|.+.---|++||-++-
T Consensus 118 ~D~viS~lPll~~P~~-~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 118 FDSVISGLPLLNFPMH-RRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred eeeEEeccccccCcHH-HHHHHHHHHHHhcCCCCeEEE
Confidence 8888774444333211 124688888888999998875
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.34 E-value=16 Score=38.02 Aligned_cols=101 Identities=17% Similarity=0.222 Sum_probs=61.7
Q ss_pred CCEEEEeCCCCchHHHHHhhC--------CcEEEeCCccchHHHHHHHHHHc-CCCeEEEEccc----ccCCCCCCCeeE
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--------NIITMSFAPRDTHEAQVQFALER-GVPALIGVLAA----ERLPYPSRAFDM 278 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--------~V~avdis~~dls~a~i~~A~er-g~~~~~~v~d~----~~Lpf~d~sFDl 278 (626)
.-+.+|+|.|+..=++.|.+. .++.+|++..-+.....+...+. ++++.-..++. ..+| ...=-+
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~--~~~~Rl 156 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP--RGGRRL 156 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc--CCCeEE
Confidence 448999999999777776653 57788887755555554444443 44444333331 2233 222222
Q ss_pred -EEeccccccccccH-HHHHHHHHhcccCCeEEEEEeC
Q 006905 279 -AHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 279 -V~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++..-++-.+.+++ ..+|..+..+|+||-+|++-..
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvD 194 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVD 194 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEecc
Confidence 22333343444433 6899999999999999999643
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.19 E-value=2 Score=45.33 Aligned_cols=103 Identities=17% Similarity=0.142 Sum_probs=61.4
Q ss_pred CCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHH-----cCCCeEEEEccccc-C-CCCCCCeeE
Q 006905 210 GSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALE-----RGVPALIGVLAAER-L-PYPSRAFDM 278 (626)
Q Consensus 210 ~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~e-----rg~~~~~~v~d~~~-L-pf~d~sFDl 278 (626)
...+++|=||-|.|.+......+ ++.-++++. ++.+...++... .+..+.+..+|... + ....++||+
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~-~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDE-NVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhH-HHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 34678999999999888776665 455555533 222222222211 12345555556222 1 234789999
Q ss_pred EEeccc--cccccc-cHHHHHHHHHhcccCCeEEEEEe
Q 006905 279 AHCSRC--LIPWNQ-FGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 279 V~~~~~--l~h~~~-~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
|+.--. ..+-.. ....++..+.+.||+||++++.+
T Consensus 199 ii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 199 IITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 996322 111100 11467888999999999999975
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=80.42 E-value=6.3 Score=44.76 Aligned_cols=100 Identities=16% Similarity=0.078 Sum_probs=61.7
Q ss_pred CCEEEEeCCCCchHHHHHhh------C--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecc
Q 006905 212 IRTAIDTGCGVASWGAYLLS------R--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSR 283 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~------~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~ 283 (626)
...|+=+|+|.|-+.....+ + .+.+++-.|..+.--+-..-+.-.-.+++...|...++-|....|++++-.
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSEL 447 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSEL 447 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHHh
Confidence 44678899999966544332 3 566666666433211111111112346677778888885568899999744
Q ss_pred ccccccccH--HHHHHHHHhcccCCeEEEEE
Q 006905 284 CLIPWNQFG--GIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 284 ~l~h~~~~~--~~~L~Ei~RvLKPGG~lvis 312 (626)
|--+.++. ...|.-+-+.|||.|..|=+
T Consensus 448 -LGSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 448 -LGSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred -hccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 32333333 68999999999999876543
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=80.23 E-value=1.2 Score=43.89 Aligned_cols=98 Identities=14% Similarity=0.044 Sum_probs=58.3
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----ccc---ceec-cccccCCCC--C-Cccceeeec
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GLV---GTYT-NWCEAMSTY--P-RTYDLIHAD 539 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gli---~~~~-~~~e~~~~y--p-~t~Dlih~~ 539 (626)
.+|||++||+|++|..+++++.- .|+.+|.+...++.+.+. |+- .++. |--+.+..+ . ..||+|-.+
T Consensus 51 ~~vLDLfaGsG~lglea~srga~--~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEALSRGAK--VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CEEEEecCCCcHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 46999999999999999999762 577888877677655432 221 1221 111111112 1 237887775
Q ss_pred cccccCCCCCCHHHHHHHh--hhhccCCcEEEEEcCh
Q 006905 540 SVFSLYKDRCETEDILLEM--DRILRPEGGVIFRDDV 574 (626)
Q Consensus 540 ~~f~~~~~~c~~~~~l~E~--dRiLRPgG~~i~~d~~ 574 (626)
==|.. -..+.+|.-+ ..+|+++|.+|+....
T Consensus 129 PPy~~----~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 129 PPFFN----GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred cCCCC----CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 55542 1234443322 4589999988886443
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=80.06 E-value=2.7 Score=44.37 Aligned_cols=145 Identities=15% Similarity=0.181 Sum_probs=75.1
Q ss_pred CCceeEEeccCchhhHhhhhhCC------CeEEEEeccCccCcccHHHHHHhccc---cee--c-cccccCCCCC----C
Q 006905 468 GRYRNILDMNAHLGGFAAALIDF------PVWVMNVVPAEAKINTLGVIYERGLV---GTY--T-NWCEAMSTYP----R 531 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~------~v~~mnv~~~~~~~~~l~~~~~rgli---~~~--~-~~~e~~~~yp----~ 531 (626)
..-.+|+|-.||.|+|-.+..++ ...-.++.+.|..+.+..++.-+-++ +.- + .+...|.... .
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~ 124 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQ 124 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST-
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence 44567999999999997777652 01123788888887777766543221 111 1 1233344322 5
Q ss_pred ccceeeeccccccC--CC-----CC----------CHH-HHHHHhhhhccCCcEEEEEcChH------HHHHHHH-HHHh
Q 006905 532 TYDLIHADSVFSLY--KD-----RC----------ETE-DILLEMDRILRPEGGVIFRDDVD------ELVKVKR-IIDA 586 (626)
Q Consensus 532 t~Dlih~~~~f~~~--~~-----~c----------~~~-~~l~E~dRiLRPgG~~i~~d~~~------~~~~~~~-~~~~ 586 (626)
.||+|-++-=|... .. .. ..+ ..+.-+-+.|++||.+++--+.. .-.++++ |++.
T Consensus 125 ~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~ll~~ 204 (311)
T PF02384_consen 125 KFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKYLLEN 204 (311)
T ss_dssp -EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHHHHHH
T ss_pred ccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchHHHHHHHHHhh
Confidence 89999988777744 11 00 112 25566889999999865532222 2345655 4554
Q ss_pred CCCeeEEeecC---CCCCCcceEEEEEec
Q 006905 587 LKWQSQIVDHE---DGPLEREKLLFAVKL 612 (626)
Q Consensus 587 l~w~~~~~~~e---~~~~~~e~~l~~~K~ 612 (626)
-.-+..+.-.. .+...+--|||.+|.
T Consensus 205 ~~i~aVI~Lp~~~F~~t~v~t~ilil~k~ 233 (311)
T PF02384_consen 205 GYIEAVISLPSNLFKPTGVPTSILILNKK 233 (311)
T ss_dssp EEEEEEEE--TTSSSSSSS-EEEEEEEES
T ss_pred chhhEEeecccceecccCcCceEEEEeec
Confidence 44443332111 112345667887774
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 626 | |||
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 5e-07 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 8e-07 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 8e-07 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 2e-06 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 4e-06 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 1e-05 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 2e-05 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 3e-05 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 4e-05 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 4e-05 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 5e-05 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 1e-04 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 1e-04 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 1e-04 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-04 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 2e-04 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 4e-04 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 4e-04 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 5e-04 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 5e-04 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 5e-04 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 6e-04 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 7e-04 |
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 5e-07
Identities = 31/181 (17%), Positives = 55/181 (30%), Gaps = 15/181 (8%)
Query: 191 PNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSRNIITMSFAPR----DTHE 246
G A + L D + +T +D GCG Y A + D E
Sbjct: 24 KEGLKAAGEWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEH------GAKKVLGIDLSE 77
Query: 247 AQVQFALERGVPALIGVLA--AERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLR 304
+ A + ++ E + A+++ S L F I +V L+
Sbjct: 78 RMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDI-CKKVYINLK 136
Query: 305 PGGYWILSGP-PINWKKHARGWQRTKEDLNKEQTAIENVAKSLCWEKIKEKGDIAIWRKP 363
G +I S P+ + W E NK ++ D+ + +
Sbjct: 137 SSGSFIFSVEHPVFTADGRQDWYT-DETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRT 195
Query: 364 I 364
+
Sbjct: 196 V 196
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 8e-07
Identities = 28/153 (18%), Positives = 54/153 (35%), Gaps = 22/153 (14%)
Query: 186 GGTMFPNGADAY----------IDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSRNII 235
G +++ + Y ++ I L+NL GS D G G + L ++ +
Sbjct: 1 GMSIYNSIGKQYSQTRVPDIRIVNAIINLLNLPKGS--VIADIGAGTGGYSVALANQGLF 58
Query: 236 TMSFAPRDTHEAQVQFALER-GVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGI 294
+ + Q A+ V G AE L P ++ D + ++
Sbjct: 59 VYAV---EPSIVMRQQAVVHPQVEWFTGY--AENLALPDKSVDGVISILAIHHFSHLEK- 112
Query: 295 YLIEVDRVLRPGGYWILSGPPINWKKHARGWQR 327
E+ R++R G +L+ + + R W
Sbjct: 113 SFQEMQRIIRDGTIVLLT---FDIRLAQRIWLY 142
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 8e-07
Identities = 32/184 (17%), Positives = 57/184 (30%), Gaps = 20/184 (10%)
Query: 217 DTGCGVASWGAYLLSRNI----ITMSFAPRDTHEAQVQFALERGVPALIGVLA--AERLP 270
D GCG L + +S E +Q ERG + + LP
Sbjct: 59 DVGCGDGYGTYKLSRTGYKAVGVDIS-------EVMIQKGKERGEGPDLSFIKGDLSSLP 111
Query: 271 YPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPPINWKKHARGWQRTKE 330
+ + F+ L + L E+ RVL+ GY ++ K + R
Sbjct: 112 FENEQFEAIMAINSLEWTEEPLRA-LNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYG 170
Query: 331 DLNKEQTAIENVAKSLC----WEKIKEKG--DIAIWRKPINHLNCKTNQKLSQNPPFCPV 384
T + + L ++ + G + K + L+ Q L+ F
Sbjct: 171 KDVVCNTMMPWEFEQLVKEQGFKVVDGIGVYKRGVNEKMLGQLSTDLQQSLTFLWVFMLK 230
Query: 385 QDPD 388
+ +
Sbjct: 231 RHKE 234
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 2e-06
Identities = 29/145 (20%), Positives = 46/145 (31%), Gaps = 14/145 (9%)
Query: 190 FPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSRNIITMSFAPR----DTH 245
G D + L + +D GCG + + A D
Sbjct: 22 SIEGLDGAAEWPALRAMLPEVGGLRIVDLGCGFGWFCRWAHEH------GASYVLGLDLS 75
Query: 246 EAQVQFALERGVPALIGVL--AAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVL 303
E + A G I ++L P +FD+A S + + + V + L
Sbjct: 76 EKMLARARAAGPDTGITYERADLDKLHLPQDSFDLA-YSSLALHYVEDVARLFRTVHQAL 134
Query: 304 RPGGYWILSGP-PINWKKHARGWQR 327
PGG+++ S PI GW
Sbjct: 135 SPGGHFVFSTEHPIYMAPARPGWAI 159
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 4e-06
Identities = 24/159 (15%), Positives = 44/159 (27%), Gaps = 26/159 (16%)
Query: 194 ADAYIDDIGKLIN-----------LNDGSIRTAIDTGCGVASWGAYLLSRNIITMSFAPR 242
+G +I+ G +D G G W +L S
Sbjct: 13 TFDAEALLGTVISAEDPDRVLIEPWATGVDGVILDVGSGTGRWTGHLASLGHQIEGL--- 69
Query: 243 DTHEAQVQFALER--GVPALIGVLAAERLPYPSRAFDMAHCSRCLI--PWNQFGGIYLIE 298
+ V+ A + V G L + + LI + L+
Sbjct: 70 EPATRLVELARQTHPSVTFHHG--TITDLSDSPKRWAGLLAWYSLIHMGPGELPDA-LVA 126
Query: 299 VDRVLRPGGYWILS---GPPINWKKHARG--WQRTKEDL 332
+ + GG ++S GP + H ++ +L
Sbjct: 127 LRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPEL 165
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 36/165 (21%), Positives = 59/165 (35%), Gaps = 27/165 (16%)
Query: 180 RFRFPGGGTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NI-- 234
+ G + D D++ L+++ G +D GCG+ L + +
Sbjct: 32 YWEDAGADVSVDDATDRLTDEMIALLDVRSGD--RVLDVGCGIGKPAVRLATARDVRVTG 89
Query: 235 ITMSFAPRDTHEAQVQFALER----GVPALIGVLA--AERLPYPSRAFDMAHCSRCLIPW 288
I++S QV A R G+ + A LP+ +FD L
Sbjct: 90 ISIS-------RPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESLHHM 142
Query: 289 NQFGGIYLIEVDRVLRPGGY-----WILSGPPINW-KKHARGWQR 327
G L E+ RVLRPGG ++L P K+ ++
Sbjct: 143 PDRGR-ALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRA 186
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 2e-05
Identities = 24/128 (18%), Positives = 40/128 (31%), Gaps = 21/128 (16%)
Query: 204 LINLNDGSIRTAIDTGCGVASWGAYLLSRNIITMSFAPR------DTHEAQVQFALERGV 257
L D +D GCG + P D + ++ A +R
Sbjct: 78 LRERLDDKATAVLDIGCGEGYYTHAFADA-------LPEITTFGLDVSKVAIKAAAKRYP 130
Query: 258 PALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPPIN 317
V ++ RLP+ + D E+ RV++PGG+ I + P
Sbjct: 131 QVTFCVASSHRLPFSDTSMDAIIRIYAPCKAE--------ELARVVKPGGWVITATPGPR 182
Query: 318 WKKHARGW 325
+G
Sbjct: 183 HLMELKGL 190
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 3e-05
Identities = 21/133 (15%), Positives = 45/133 (33%), Gaps = 26/133 (19%)
Query: 197 YIDDIGKLIN-LNDGSIRTAIDTGCGVASWGAYLLSRNIITMSFAPR-------DTHEAQ 248
++ + + + +G +D GCG G Y D +
Sbjct: 2 SLERPEEYLPNIFEGKKGVIVDYGCGN---GFY-------CKYLLEFATKLYCIDINVIA 51
Query: 249 VQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGY 308
++ E+ ++I + ++ P + D + + EV R+L+ G
Sbjct: 52 LKEVKEK-FDSVITL--SDPKEIPDNSVDFILFANSF-HDMDDKQHVISEVKRILKDDGR 107
Query: 309 WILSGPPINWKKH 321
I+ I+W+K
Sbjct: 108 VII----IDWRKE 116
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 4e-05
Identities = 25/178 (14%), Positives = 52/178 (29%), Gaps = 20/178 (11%)
Query: 186 GGTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPR 242
T+F ++I + G+ ID G G + L + +I + F+
Sbjct: 21 SKTLFAPIYPIIAENIINRFGITAGTC---IDIGSGPGALSIALAKQSDFSIRALDFSKH 77
Query: 243 DTHEAQVQFALERGVPALIGVLA--AERLPYPSRAFDMAHCSRCLIPWN-----QFGGIY 295
A + + + I ++ +P D+ SR + +
Sbjct: 78 MNEIAL-KNIADANLNDRIQIVQGDVHNIPIEDNYADLI-VSRGSV-FFWEDVATA---- 130
Query: 296 LIEVDRVLRPGGYWILSGPPINWKKHARGWQRTKEDLNKEQTAIENVAKSLCWEKIKE 353
E+ R+L+ GG + G N + + E+ +
Sbjct: 131 FREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQN 188
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 4e-05
Identities = 31/146 (21%), Positives = 54/146 (36%), Gaps = 21/146 (14%)
Query: 188 TMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSRNIITMSFAPRDTHEA 247
F AY+ ++ + L ++ G G + L + + S E
Sbjct: 26 RWFLVHRFAYLSELQAVKCLLPEG--RGVEIGVGTGRFAVPLKIKIGVEPS-------ER 76
Query: 248 QVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSR--CLIP-WNQFGGIYLIEVDRVLR 304
+ A +RGV L G AE LP +FD A C + + L E R+L+
Sbjct: 77 MAEIARKRGVFVLKGT--AENLPLKDESFDFALMVTTICFVDDPERA----LKEAYRILK 130
Query: 305 PGGYWILSGPPINW---KKHARGWQR 327
GGY I+ +++ + ++
Sbjct: 131 KGGYLIVGIVDRESFLGREYEKNKEK 156
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 5e-05
Identities = 22/138 (15%), Positives = 44/138 (31%), Gaps = 32/138 (23%)
Query: 191 PNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSRNIITMSFAPR-------- 242
P +A + + L D + D GCG G T+ A
Sbjct: 28 PGSPEATRKAVSFINELTDDA--KIADIGCG---TGG-------QTLFLADYVKGQITGI 75
Query: 243 DTHEAQVQFALER----GVPALIGVLAA--ERLPYPSRAFDM--AHCSRCLIPWNQFGGI 294
D ++ E + + + LP+ + D+ + + I + +
Sbjct: 76 DLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFERG--- 132
Query: 295 YLIEVDRVLRPGGYWILS 312
+ E + L+ GG+ +S
Sbjct: 133 -MNEWSKYLKKGGFIAVS 149
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 1e-04
Identities = 18/121 (14%), Positives = 42/121 (34%), Gaps = 7/121 (5%)
Query: 217 DTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPS 273
D G G + + + +A+ F+ E I +LP+
Sbjct: 29 DCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAE-NFSRENNFKLNISKGDIRKLPFKD 87
Query: 274 RAFDMAHCSRCL--IPWNQFGGIYLIEVDRVLRPGGYWILSGPPINWKKHARGWQRTKED 331
+ + + + N + E+ RVL+PGG ++ +++ +G + + +
Sbjct: 88 ESMSFVYSYGTIFHMRKNDVKE-AIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGE 146
Query: 332 L 332
Sbjct: 147 F 147
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 1e-04
Identities = 23/128 (17%), Positives = 40/128 (31%), Gaps = 32/128 (25%)
Query: 201 IGKLINLNDGSIRTAIDTGCGVASWGAYLLSRNIITMSFAPR--------DTHEAQVQFA 252
+ + NL + S D GCG TM A D +
Sbjct: 38 LSFIDNLTEKS--LIADIGCGTG----------GQTMVLAGHVTGQVTGLDFLSGFIDIF 85
Query: 253 LER----GVPALIGVLA--AERLPYPSRAFDMAHCSRCL--IPWNQFGGIYLIEVDRVLR 304
G+ + + + LP+ + D+ + I + + L E + L+
Sbjct: 86 NRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAIYNIGFERG----LNEWRKYLK 141
Query: 305 PGGYWILS 312
GGY +S
Sbjct: 142 KGGYLAVS 149
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 1e-04
Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 4/121 (3%)
Query: 214 TAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPY 271
+ G +L S + + + +A+ Q A E+GV
Sbjct: 32 KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAK-QLAQEKGVKITTVQSNLADFDI 90
Query: 272 PSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPPINWKKHARGWQRTKED 331
+ A++ C +P + +V + L+PGG +IL G ++ G + +
Sbjct: 91 VADAWEGIVSIFCHLPSSLRQQ-LYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDL 149
Query: 332 L 332
L
Sbjct: 150 L 150
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 2e-04
Identities = 68/565 (12%), Positives = 153/565 (27%), Gaps = 185/565 (32%)
Query: 166 VEKAVQNWIRYEGDRFRFPGGGTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVAS- 224
++ + + G F T+ + + +++ +N + + I T S
Sbjct: 51 IDHIIMSKDAVSGTLRLF---WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107
Query: 225 -WGAYLLSRN-------IITMSFAPRDTHEAQVQFAL-----ERGVPALIG-------VL 264
Y+ R+ + R +++ AL + V + G +
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV-LIDGVLGSGKTWV 166
Query: 265 AAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGG--------YWILSGPPI 316
A + ++ + +C + I+ + + P + +
Sbjct: 167 ALDVC----LSYKV----QCKMD----FKIFWLNLKNCNSPETVLEMLQKLLYQIDP--- 211
Query: 317 NWKKHARGWQRTKEDLNKEQTAIENVAKSLCWEKIKEKGDIA--IW-RKPINHLN--CKT 371
NW + K ++ Q + + L + + + + K N N CK
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRL---LKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268
Query: 372 NQKLSQNPPFCPVQDPDKAWYTQMGTCLTRLPEVSSDRETAG---GE----LAKW----P 420
L + K + T +S D + E L K+ P
Sbjct: 269 ---L--------LTTRFKQVTDFLSAATTT--HISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 421 QRLNAVPPRISKGT--VKGITPEIFQQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMN- 477
Q L P + I E + W +K +N + I++ +
Sbjct: 316 QDL---PREVLTTNPRRLSIIAESIRDGLATWD----NWKHVNCD-----KLTTIIESSL 363
Query: 478 AHL--GGFAAALIDFPVWVMNVVPAEAKI--NTLGVIYERGLVGTYTNWCEAMSTYPR-- 531
L + V+ P A I L +I W + + +
Sbjct: 364 NVLEPAEYRKMFDRLSVF-----PPSAHIPTILLSLI-----------WFDVIKSDVMVV 407
Query: 532 -----TYDLIHAD------SVFSLYKD-RCETED------ILLEMDRILR---------- 563
Y L+ S+ S+Y + + + E+ +++ I +
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 564 PEGGVIF-----------RDDVDEL------------VKVKR--------------IIDA 586
+ + L K++ +
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 587 LKWQSQIVDHEDGPLEREKLLFAVK 611
++ I D++ + E+L+ A+
Sbjct: 528 KFYKPYICDNDP---KYERLVNAIL 549
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 2e-04
Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 9/119 (7%)
Query: 194 ADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQV 249
A+ + G+ ++ GCG+ + L I ++ +P +A+
Sbjct: 22 AETLEKLLHHDTVYPPGA--KVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKAR- 78
Query: 250 QFALERGVPALIGVLA-AERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGG 307
+ + G+ + + A LP+ +FD L L + +VL+PGG
Sbjct: 79 ENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEA-LKSLKKVLKPGG 136
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 4e-04
Identities = 16/109 (14%), Positives = 31/109 (28%), Gaps = 4/109 (3%)
Query: 208 NDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPALIGVL 264
N A+D G G+ LL + + +A+ E
Sbjct: 76 NKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCC 135
Query: 265 AAERLPYPSRAFDMAHCSRCLIPW-NQFGGIYLIEVDRVLRPGGYWILS 312
+ ++D+ + +Q +L LRP G ++
Sbjct: 136 GLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIK 184
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 4e-04
Identities = 25/157 (15%), Positives = 45/157 (28%), Gaps = 35/157 (22%)
Query: 191 PNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSRNIITMSFAPR-------D 243
P+ + + +L L ++ GCG G F P+ D
Sbjct: 32 PDPELTFDLWLSRL--LTPQ--TRVLEAGCGH---GPD-------AARFGPQAARWAAYD 77
Query: 244 THEAQVQFALERGVPA-LIGVLAAERLPYPSRA-FDMAHCSRCLIPWNQFGGIYLIEVDR 301
++ A A + LP A F + R ++ +
Sbjct: 78 FSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRRGPTSV-------ILRLPE 130
Query: 302 VLRPGGYWILSGPPINWKKHAR-----GWQRTKEDLN 333
+ P +++ GP +N + GW ED
Sbjct: 131 LAAPDAHFLYVGPRLNVPEVPERLAAVGWDIVAEDHV 167
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 5e-04
Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 16/136 (11%)
Query: 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSRNI----ITMSFAPRDTHEAQVQ 250
+ I+ + L+ +D CGV + L + +S E ++
Sbjct: 22 RSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDIS-------EDMIR 74
Query: 251 FALER----GVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQF-GGIYLIEVDRVLRP 305
A E V A +L + + FD ++ + EV RVL+P
Sbjct: 75 KAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKP 134
Query: 306 GGYWILSGPPINWKKH 321
G +I+ +
Sbjct: 135 SGKFIMYFTDLRELLP 150
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 5e-04
Identities = 22/133 (16%), Positives = 40/133 (30%), Gaps = 16/133 (12%)
Query: 188 TMFPNGADAYI--------DDIGKLIN-LNDGSIRTAIDTGCGVASWGAYLLSR---NII 235
+ + Y+ D+ KL+ +D G A + ++
Sbjct: 5 KIHHHHHHMYVTSQIHAKGSDLAKLMQIAALKGNEEVLDVATGGGHV-ANAFAPFVKKVV 63
Query: 236 TMSFAPRDTHEAQVQFALERGVPALIGVLA-AERLPYPSRAFDMAHCSRCLIPWNQFGGI 294
A+ F G + V AE++P+ F + C +
Sbjct: 64 AFDLTEDILKVAR-AFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASF 122
Query: 295 YLIEVDRVLRPGG 307
+ E RVL+ GG
Sbjct: 123 -VSEAYRVLKKGG 134
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 5e-04
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 252 ALERGVPALIGVLA-AERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGG 307
A E+GV + AE LP+P +FD+ C ++ + EV RVL+ G
Sbjct: 63 AQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRK-AVREVARVLKQDG 118
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 6e-04
Identities = 28/150 (18%), Positives = 49/150 (32%), Gaps = 16/150 (10%)
Query: 167 EKAVQNWIRYEGDRFRFPGGGTMFPNGADAYIDDIGKLI-NLNDGSIRTAIDTGCGVASW 225
KA++ W GG + D I+ I +L A+D G G+
Sbjct: 51 GKALEYWRTVPATVSGVLGG---MDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRI 107
Query: 226 GAYLLSR--NIITMSFAPRDTHEAQVQFALER--GVPALIGVLA-AERLPYPSRAFDMAH 280
LL++ + + + ++ A G+P +LA E P +D+
Sbjct: 108 TKNLLTKLYATTDLL----EPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIV 163
Query: 281 CSRCL--IPWNQFGGIYLIEVDRVLRPGGY 308
+ F + + L P GY
Sbjct: 164 IQWTAIYLTDADFVK-FFKHCQQALTPNGY 192
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 7e-04
Identities = 26/142 (18%), Positives = 44/142 (30%), Gaps = 29/142 (20%)
Query: 185 GGGTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSRNI---------- 234
G + G +A I I LN+ S +D G G G I
Sbjct: 32 GENYISSGGLEA-TKKILSDIELNENS--KVLDIGSG---LGG--GCMYINEKYGAHTHG 83
Query: 235 ITMSFAPRDTHEAQVQFALER-GVPALIGVLA--AERLPYPSRAFDMAHCSRCLIPWN-Q 290
I + V A ER I A +P FD+ + ++ + +
Sbjct: 84 IDIC-------SNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAILALSLE 136
Query: 291 FGGIYLIEVDRVLRPGGYWILS 312
+ + L+P G +++
Sbjct: 137 NKNKLFQKCYKWLKPTGTLLIT 158
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 626 | |||
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.51 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.46 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.44 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.43 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.43 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.41 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.41 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.4 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.4 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.39 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.39 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.39 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.39 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.38 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.38 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.38 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.37 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.37 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.36 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.36 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.36 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.35 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.35 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.35 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.34 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.34 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.34 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.33 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.33 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.32 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.32 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.32 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.32 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.32 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.31 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.31 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.31 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.31 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.3 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.3 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.3 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.3 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.3 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.3 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.29 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.29 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.28 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.27 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.27 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.27 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.26 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.26 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.26 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.26 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.25 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.25 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.25 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.25 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.24 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.24 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.24 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.23 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.23 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.23 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.22 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.22 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.22 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.22 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.22 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.22 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.21 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.21 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.21 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.2 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.2 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.2 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.2 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.2 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.19 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.19 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.18 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.17 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.17 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.17 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.17 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.16 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.16 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.15 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.14 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.14 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.13 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.13 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.13 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.13 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.12 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.12 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.12 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.12 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.12 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.12 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.12 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.12 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.12 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.11 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.11 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.11 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.11 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.11 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.11 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.11 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.11 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.1 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.1 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.1 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.1 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.09 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.09 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.09 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.09 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.08 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.08 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.08 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.07 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.07 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.07 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.06 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.06 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.06 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.06 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.05 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.05 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.05 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.05 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.05 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.04 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.04 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.04 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.04 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.04 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.04 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.03 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.03 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.03 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.03 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.03 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.03 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.03 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.03 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.02 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.02 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.02 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.02 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.01 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.01 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.01 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.01 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.01 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.01 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.0 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.0 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.0 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.0 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.0 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.0 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.0 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.0 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.0 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.0 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.0 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.0 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.0 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.0 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.0 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 98.99 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 98.99 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 98.99 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 98.99 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.99 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 98.99 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 98.99 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 98.98 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 98.98 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 98.98 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 98.98 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 98.98 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 98.98 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 98.97 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 98.97 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 98.97 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 98.97 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 98.97 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 98.97 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 98.97 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 98.97 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 98.97 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 98.97 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 98.96 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 98.96 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 98.96 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 98.96 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 98.96 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 98.96 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 98.96 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 98.96 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 98.95 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 98.95 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 98.95 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 98.95 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 98.95 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 98.95 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 98.95 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 98.94 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 98.94 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 98.94 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 98.94 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 98.93 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 98.93 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 98.93 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 98.93 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 98.93 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.93 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 98.93 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 98.92 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 98.92 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 98.92 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 98.92 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 98.92 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.91 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 98.91 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 98.91 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 98.91 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 98.91 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 98.91 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 98.91 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.91 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 98.91 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.89 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 98.89 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 98.88 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 98.88 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 98.88 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.87 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 98.87 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 98.87 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 98.87 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.87 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 98.87 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 98.87 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 98.86 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 98.86 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.86 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 98.85 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 98.85 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 98.85 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 98.85 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 98.85 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 98.85 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 98.85 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 98.85 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 98.84 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 98.84 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 98.84 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 98.84 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 98.83 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 98.82 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 98.82 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 98.82 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.81 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 98.81 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 98.81 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 98.81 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 98.81 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.81 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 98.81 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 98.81 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.8 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 98.8 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 98.8 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 98.8 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 98.79 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.77 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.77 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 98.77 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.77 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 98.77 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.77 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 98.77 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.76 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.76 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.76 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.76 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.76 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 98.75 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 98.75 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 98.75 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.75 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.75 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.75 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 98.74 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 98.74 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 98.74 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.74 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 98.73 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.73 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 98.73 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 98.73 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 98.72 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.71 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.71 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 98.71 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.7 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.7 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.7 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.7 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 98.7 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 98.7 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 98.69 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.69 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 98.69 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.69 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 98.69 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 98.69 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.68 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.68 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 98.68 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 98.67 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.67 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.67 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 98.67 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 98.67 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 98.67 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 98.66 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 98.66 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.66 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.65 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 98.64 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.64 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 98.64 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.63 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.63 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 98.62 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.62 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 98.62 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 98.62 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.62 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 98.61 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.6 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.6 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 98.6 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 98.6 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.6 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.59 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.59 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 98.59 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 98.59 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.59 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.59 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 98.58 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 98.58 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.58 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 98.57 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.57 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 98.56 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.56 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 98.56 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 98.56 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 98.56 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 98.55 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 98.55 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 98.55 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 98.54 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 98.54 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.53 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.53 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 98.53 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 98.53 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.52 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 98.52 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.52 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.52 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.52 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 98.51 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 98.5 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.5 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.49 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 98.49 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 98.49 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.49 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.49 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 98.48 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 98.48 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.47 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.47 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 98.46 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.46 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 98.46 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.45 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.44 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.44 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.43 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.43 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.42 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.42 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.42 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.41 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.41 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.41 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.41 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 98.41 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.41 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.4 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.4 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.4 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.4 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.39 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.39 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 98.39 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.39 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.39 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 98.39 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 98.39 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.39 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.38 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.38 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.38 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.38 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.38 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.38 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.37 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.37 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 98.37 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.37 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.36 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.36 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 98.35 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.34 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.34 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 98.33 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.33 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.33 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.32 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.32 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 98.32 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.32 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.3 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.29 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.29 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.29 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.29 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.29 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.28 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.28 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.28 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.27 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.26 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.26 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.24 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.24 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.23 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.22 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.21 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.21 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.2 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 98.2 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.19 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.18 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.18 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.18 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.15 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.14 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.14 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.13 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.13 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 98.13 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.13 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.12 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.1 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.09 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.09 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.08 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.07 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.06 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.05 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.02 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 97.99 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 97.98 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 97.95 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 97.94 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 97.93 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 97.92 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 97.92 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 97.92 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 97.91 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 97.9 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.88 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 97.88 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 97.86 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 97.84 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 97.82 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 97.82 |
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-14 Score=148.29 Aligned_cols=107 Identities=23% Similarity=0.317 Sum_probs=84.4
Q ss_pred HHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCC
Q 006905 196 AYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPS 273 (626)
Q Consensus 196 ~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d 273 (626)
+.++.|.+..+ ...+|||||||+|.++..|+++ .|+++|+++ .|++.|++ ...+.+.+++++.+|+++
T Consensus 28 ~l~~~l~~~~~----~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~-----~ml~~a~~-~~~v~~~~~~~e~~~~~~ 97 (257)
T 4hg2_A 28 ALFRWLGEVAP----ARGDALDCGCGSGQASLGLAEFFERVHAVDPGE-----AQIRQALR-HPRVTYAVAPAEDTGLPP 97 (257)
T ss_dssp HHHHHHHHHSS----CSSEEEEESCTTTTTHHHHHTTCSEEEEEESCH-----HHHHTCCC-CTTEEEEECCTTCCCCCS
T ss_pred HHHHHHHHhcC----CCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcH-----Hhhhhhhh-cCCceeehhhhhhhcccC
Confidence 34444444432 2458999999999999999997 567776654 56666543 346788889999999999
Q ss_pred CCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 274 RAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 274 ~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++||+|+|+.++ ||.+ ...++.|+.|+|||||.|++...
T Consensus 98 ~sfD~v~~~~~~-h~~~-~~~~~~e~~rvLkpgG~l~~~~~ 136 (257)
T 4hg2_A 98 ASVDVAIAAQAM-HWFD-LDRFWAELRRVARPGAVFAAVTY 136 (257)
T ss_dssp SCEEEEEECSCC-TTCC-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcccEEEEeeeh-hHhh-HHHHHHHHHHHcCCCCEEEEEEC
Confidence 999999999999 6665 57899999999999999999754
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.8e-13 Score=136.35 Aligned_cols=110 Identities=16% Similarity=0.260 Sum_probs=85.5
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCCCCCCCe
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLPYPSRAF 276 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lpf~d~sF 276 (626)
.+.+.+... ++.+|||||||+|.++..|+++ .++++|+++.++..+.. .+.+.+. .+.+.++|...+|+++++|
T Consensus 28 ~l~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~-~~~~~~~~~v~~~~~d~~~l~~~~~~f 104 (260)
T 1vl5_A 28 KLMQIAALK--GNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARA-FIEGNGHQQVEYVQGDAEQMPFTDERF 104 (260)
T ss_dssp HHHHHHTCC--SCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHH-HHHHTTCCSEEEEECCC-CCCSCTTCE
T ss_pred HHHHHhCCC--CCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHH-HHHhcCCCceEEEEecHHhCCCCCCCE
Confidence 445555433 3559999999999999999887 68888887755544332 2333444 4778888999999999999
Q ss_pred eEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 277 DMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 277 DlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
|+|+|+.+++|+. ++..+|.++.|+|||||+|++..
T Consensus 105 D~V~~~~~l~~~~-d~~~~l~~~~r~LkpgG~l~~~~ 140 (260)
T 1vl5_A 105 HIVTCRIAAHHFP-NPASFVSEAYRVLKKGGQLLLVD 140 (260)
T ss_dssp EEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEEhhhhHhcC-CHHHHHHHHHHHcCCCCEEEEEE
Confidence 9999999997775 46899999999999999999974
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.7e-13 Score=130.08 Aligned_cols=99 Identities=17% Similarity=0.103 Sum_probs=83.7
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWN 289 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~ 289 (626)
+.+|||||||+|.++..|+++ .++++|+++ .+++.++++...+.+..+|...+++++++||+|++..+++|+.
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~-----~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 116 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPAT-----RLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMG 116 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTCCEEEECCCH-----HHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCC
T ss_pred CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCH-----HHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCC
Confidence 457999999999999999987 577777654 5666777776678888889888999899999999999998876
Q ss_pred -ccHHHHHHHHHhcccCCeEEEEEeCC
Q 006905 290 -QFGGIYLIEVDRVLRPGGYWILSGPP 315 (626)
Q Consensus 290 -~~~~~~L~Ei~RvLKPGG~lvis~pp 315 (626)
++...+|+++.++|||||++++..+.
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~i~~~~ 143 (203)
T 3h2b_A 117 PGELPDALVALRMAVEDGGGLLMSFFS 143 (203)
T ss_dssp TTTHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence 35589999999999999999998743
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=4.1e-13 Score=137.08 Aligned_cols=112 Identities=17% Similarity=0.129 Sum_probs=81.6
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC------CcEEEeCCccchHHHHHHHHHHcC--CCeEEEEcccccCCC
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR------NIITMSFAPRDTHEAQVQFALERG--VPALIGVLAAERLPY 271 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~------~V~avdis~~dls~a~i~~A~erg--~~~~~~v~d~~~Lpf 271 (626)
.+..++.....++.+|||||||+|.++..|+++ .|+++|+++.++..+..+.. ..+ .++.+..+|...+|+
T Consensus 59 ~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~-~~~~~~~v~~~~~D~~~~~~ 137 (261)
T 4gek_A 59 MIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHID-AYKAPTPVDVIEGDIRDIAI 137 (261)
T ss_dssp HHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHH-TSCCSSCEEEEESCTTTCCC
T ss_pred HHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHH-hhccCceEEEeecccccccc
Confidence 334444322334569999999999999999875 47888887765554443332 223 357788888888887
Q ss_pred CCCCeeEEEeccccccccccH-HHHHHHHHhcccCCeEEEEEeC
Q 006905 272 PSRAFDMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 272 ~d~sFDlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+ .||+|+++.+++++.... ..+|+++.|+|||||.|+++..
T Consensus 138 ~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~ 179 (261)
T 4gek_A 138 E--NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK 179 (261)
T ss_dssp C--SEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred c--ccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEec
Confidence 4 599999999996665432 5789999999999999999753
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.43 E-value=2e-13 Score=133.50 Aligned_cols=101 Identities=8% Similarity=-0.036 Sum_probs=75.2
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHH------------cCCCeEEEEcccccCCCCC-CCe
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALE------------RGVPALIGVLAAERLPYPS-RAF 276 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~e------------rg~~~~~~v~d~~~Lpf~d-~sF 276 (626)
+.+|||+|||+|.++..|+++ .|+++|+++.++..+..+.... ....+.+.++|+..+++++ ++|
T Consensus 23 ~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~f 102 (203)
T 1pjz_A 23 GARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHC 102 (203)
T ss_dssp TCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHHSE
T ss_pred CCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccCCCE
Confidence 458999999999999999987 4777777665444332221100 1235778888999998775 899
Q ss_pred eEEEeccccccccccH-HHHHHHHHhcccCCeEEEEE
Q 006905 277 DMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 277 DlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis 312 (626)
|+|++..+++|+.... ..+++++.|+|||||++++.
T Consensus 103 D~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~ 139 (203)
T 1pjz_A 103 AAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI 139 (203)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred EEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 9999998887776432 57999999999999985544
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-12 Score=130.80 Aligned_cols=117 Identities=16% Similarity=0.119 Sum_probs=90.9
Q ss_pred cHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccc
Q 006905 193 GADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAE 267 (626)
Q Consensus 193 ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~ 267 (626)
.....++.+.+.+...+ +.+|||||||+|.++..|++. .++++|+++.++..+.. .+...++ .+.+..+|..
T Consensus 20 ~~~~~~~~l~~~~~~~~--~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~-~~~~~~~~~~v~~~~~d~~ 96 (256)
T 1nkv_A 20 FTEEKYATLGRVLRMKP--GTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKR-RAEELGVSERVHFIHNDAA 96 (256)
T ss_dssp CCHHHHHHHHHHTCCCT--TCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEESCCT
T ss_pred CCHHHHHHHHHhcCCCC--CCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHH-HHHhcCCCcceEEEECChH
Confidence 34556666777665443 459999999999999998875 68888888765554333 3334454 3788888988
Q ss_pred cCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 268 RLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 268 ~Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.+++ +++||+|+|..+++|+.+ ...+|+++.|+|||||++++..+
T Consensus 97 ~~~~-~~~fD~V~~~~~~~~~~~-~~~~l~~~~r~LkpgG~l~~~~~ 141 (256)
T 1nkv_A 97 GYVA-NEKCDVAACVGATWIAGG-FAGAEELLAQSLKPGGIMLIGEP 141 (256)
T ss_dssp TCCC-SSCEEEEEEESCGGGTSS-SHHHHHHHTTSEEEEEEEEEEEE
T ss_pred hCCc-CCCCCEEEECCChHhcCC-HHHHHHHHHHHcCCCeEEEEecC
Confidence 8888 889999999999977654 68999999999999999999864
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.41 E-value=9e-13 Score=130.54 Aligned_cols=97 Identities=21% Similarity=0.185 Sum_probs=81.0
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHc--CCCeEEEEcccccCCCCCCCeeEEEecccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALER--GVPALIGVLAAERLPYPSRAFDMAHCSRCLIP 287 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~er--g~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h 287 (626)
+.+|||||||+|.++..|+++ .++++|+++ .+++.++++ ...+.+...|...+++++++||+|++..+++|
T Consensus 54 ~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~-----~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 128 (242)
T 3l8d_A 54 EAEVLDVGCGDGYGTYKLSRTGYKAVGVDISE-----VMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEW 128 (242)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCEEEEEESCH-----HHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTS
T ss_pred CCeEEEEcCCCCHHHHHHHHcCCeEEEEECCH-----HHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhh
Confidence 458999999999999999988 466666644 566666665 34577888899999999999999999999977
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 288 WNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 288 ~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+. ++..++.++.++|||||++++..+
T Consensus 129 ~~-~~~~~l~~~~~~L~pgG~l~i~~~ 154 (242)
T 3l8d_A 129 TE-EPLRALNEIKRVLKSDGYACIAIL 154 (242)
T ss_dssp SS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cc-CHHHHHHHHHHHhCCCeEEEEEEc
Confidence 74 568999999999999999999864
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.7e-12 Score=126.68 Aligned_cols=144 Identities=14% Similarity=0.156 Sum_probs=98.4
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCCCCC
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLPYPS 273 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lpf~d 273 (626)
.+.+.+.... +.+|||+|||+|.++..+++. .++++|+++..+..+..... ..+. .+.+...|...+++++
T Consensus 28 ~~~~~~~~~~--~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~~d~~~~~~~~ 104 (219)
T 3dh0_A 28 KVLKEFGLKE--GMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVN-KLGLKNVEVLKSEENKIPLPD 104 (219)
T ss_dssp HHHHHHTCCT--TCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHH-HHTCTTEEEEECBTTBCSSCS
T ss_pred HHHHHhCCCC--CCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHH-HcCCCcEEEEecccccCCCCC
Confidence 3444444333 458999999999999888765 58888887765554443333 3343 4778888898999999
Q ss_pred CCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCCCcccccccccchhhhhHHHHHHHHHHHHhhchhhhc
Q 006905 274 RAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPPINWKKHARGWQRTKEDLNKEQTAIENVAKSLCWEKIK 352 (626)
Q Consensus 274 ~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~pp~~w~~~~~~w~~~~e~l~~~~~~ie~l~~~l~w~~v~ 352 (626)
++||+|+++.+++|+. +...++.++.|+|||||.+++............ ..... .....+..+++..+|+.+.
T Consensus 105 ~~fD~v~~~~~l~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~----~~~~~-~~~~~~~~~l~~~Gf~~~~ 177 (219)
T 3dh0_A 105 NTVDFIFMAFTFHELS-EPLKFLEELKRVAKPFAYLAIIDWKKEERDKGP----PPEEV-YSEWEVGLILEDAGIRVGR 177 (219)
T ss_dssp SCEEEEEEESCGGGCS-SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSC----CGGGS-CCHHHHHHHHHHTTCEEEE
T ss_pred CCeeEEEeehhhhhcC-CHHHHHHHHHHHhCCCeEEEEEEecccccccCC----chhcc-cCHHHHHHHHHHCCCEEEE
Confidence 9999999999997775 468999999999999999999863221111000 00000 1124466667777776553
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-12 Score=131.09 Aligned_cols=115 Identities=17% Similarity=0.234 Sum_probs=89.1
Q ss_pred cHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcC---CCeEEEEccc
Q 006905 193 GADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERG---VPALIGVLAA 266 (626)
Q Consensus 193 ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg---~~~~~~v~d~ 266 (626)
+.....+.+.+.+... ++.+|||||||+|.++..|+++ .++++|+++ .+++.++++. ..+.+...|.
T Consensus 39 ~~~~~~~~~~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~-----~~~~~a~~~~~~~~~~~~~~~d~ 111 (266)
T 3ujc_A 39 GGLEATKKILSDIELN--ENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICS-----NIVNMANERVSGNNKIIFEANDI 111 (266)
T ss_dssp THHHHHHHHTTTCCCC--TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCH-----HHHHHHHHTCCSCTTEEEEECCT
T ss_pred chHHHHHHHHHhcCCC--CCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCH-----HHHHHHHHHhhcCCCeEEEECcc
Confidence 3444445555554333 3559999999999999999886 566776654 5666676654 4577888898
Q ss_pred ccCCCCCCCeeEEEecccccccc-ccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 267 ERLPYPSRAFDMAHCSRCLIPWN-QFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 267 ~~Lpf~d~sFDlV~~~~~l~h~~-~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
..+|+++++||+|++..+++|+. .+...+|.++.|+|||||.+++..+
T Consensus 112 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (266)
T 3ujc_A 112 LTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDY 160 (266)
T ss_dssp TTCCCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccCCCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 88999999999999999997774 3458999999999999999999864
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.8e-13 Score=135.14 Aligned_cols=99 Identities=15% Similarity=0.177 Sum_probs=80.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcC---CCeEEEEcccccCCCCCCCeeEEEeccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERG---VPALIGVLAAERLPYPSRAFDMAHCSRC 284 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg---~~~~~~v~d~~~Lpf~d~sFDlV~~~~~ 284 (626)
.+.+|||||||+|.++..|+++ .++++|+++. +++.++++. ..+.+...|...+++++++||+|+|..+
T Consensus 93 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~-----~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 167 (254)
T 1xtp_A 93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKH-----MLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWT 167 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHH-----HHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESC
T ss_pred CCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHH-----HHHHHHHHhccCCceEEEEccHHHCCCCCCCeEEEEEcch
Confidence 4569999999999999998876 4788888664 444554443 3467778888889998899999999999
Q ss_pred cccccc-cHHHHHHHHHhcccCCeEEEEEeC
Q 006905 285 LIPWNQ-FGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 285 l~h~~~-~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++|+.+ +...+|.++.|+|||||++++..+
T Consensus 168 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 198 (254)
T 1xtp_A 168 AIYLTDADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 988754 348999999999999999999864
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2e-12 Score=128.92 Aligned_cols=110 Identities=23% Similarity=0.294 Sum_probs=86.2
Q ss_pred HHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCCCCCCCee
Q 006905 201 IGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLPYPSRAFD 277 (626)
Q Consensus 201 L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lpf~d~sFD 277 (626)
+.+.+.... +.+|||||||+|.++..+++. .++++|+++.++..+... +...+. .+.+.+.|...+|+++++||
T Consensus 13 ~~~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~v~~~~~d~~~~~~~~~~fD 89 (239)
T 1xxl_A 13 MIKTAECRA--EHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSF-AQEKGVENVRFQQGTAESLPFPDDSFD 89 (239)
T ss_dssp HHHHHTCCT--TCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH-HHHHTCCSEEEEECBTTBCCSCTTCEE
T ss_pred HHHHhCcCC--CCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHH-HHHcCCCCeEEEecccccCCCCCCcEE
Confidence 444444443 559999999999999999887 688888877555443333 333343 47788888889999999999
Q ss_pred EEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 278 MAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 278 lV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+|+|..+++|+.+ ...+|.++.|+|||||++++..+
T Consensus 90 ~v~~~~~l~~~~~-~~~~l~~~~~~LkpgG~l~~~~~ 125 (239)
T 1xxl_A 90 IITCRYAAHHFSD-VRKAVREVARVLKQDGRFLLVDH 125 (239)
T ss_dssp EEEEESCGGGCSC-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEECCchhhccC-HHHHHHHHHHHcCCCcEEEEEEc
Confidence 9999999977764 68999999999999999999753
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.4e-12 Score=130.21 Aligned_cols=117 Identities=18% Similarity=0.155 Sum_probs=90.6
Q ss_pred HHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEccccc
Q 006905 194 ADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAER 268 (626)
Q Consensus 194 a~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~ 268 (626)
.......+.+.+. ...++.+|||||||+|.++..+++. .++++|+++..+..+.. .+...+++ +.+...|...
T Consensus 30 ~~~~~~~~l~~l~-~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~ 107 (267)
T 3kkz_A 30 SPEVTLKALSFID-NLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNR-NARQSGLQNRVTGIVGSMDD 107 (267)
T ss_dssp CHHHHHHHHTTCC-CCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEECCTTS
T ss_pred CHHHHHHHHHhcc-cCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHH-HHHHcCCCcCcEEEEcChhh
Confidence 3445555555554 1234569999999999999999986 68888887755544333 33344543 7888889999
Q ss_pred CCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 269 LPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 269 Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+|+++++||+|+|..+++|+ +...+++++.++|||||++++..+
T Consensus 108 ~~~~~~~fD~i~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~ 151 (267)
T 3kkz_A 108 LPFRNEELDLIWSEGAIYNI--GFERGLNEWRKYLKKGGYLAVSEC 151 (267)
T ss_dssp CCCCTTCEEEEEESSCGGGT--CHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred CCCCCCCEEEEEEcCCceec--CHHHHHHHHHHHcCCCCEEEEEEe
Confidence 99999999999999999777 468999999999999999999864
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.9e-12 Score=125.47 Aligned_cols=115 Identities=17% Similarity=0.232 Sum_probs=87.7
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccC
Q 006905 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERL 269 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~L 269 (626)
....+.+.+.+... ..+|||+|||+|.++..|+++ .++++|+++..+..+... +...+. .+.+...|...+
T Consensus 30 ~~~~~~~~~~~~~~---~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~-~~~~~~~~~~~~~~~d~~~~ 105 (219)
T 3dlc_A 30 PIIAENIINRFGIT---AGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKN-IADANLNDRIQIVQGDVHNI 105 (219)
T ss_dssp HHHHHHHHHHHCCC---EEEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEEECBTTBC
T ss_pred HHHHHHHHHhcCCC---CCEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHH-HHhccccCceEEEEcCHHHC
Confidence 33444555555433 228999999999999999885 678888877555443332 223343 477888899999
Q ss_pred CCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 270 PYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 270 pf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++++++||+|+++.+++|+ .+...+|.++.|+|||||++++...
T Consensus 106 ~~~~~~~D~v~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l~~~~~ 149 (219)
T 3dlc_A 106 PIEDNYADLIVSRGSVFFW-EDVATAFREIYRILKSGGKTYIGGG 149 (219)
T ss_dssp SSCTTCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCcccccEEEECchHhhc-cCHHHHHHHHHHhCCCCCEEEEEec
Confidence 9999999999999999777 4568999999999999999999864
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-12 Score=131.53 Aligned_cols=115 Identities=24% Similarity=0.372 Sum_probs=87.3
Q ss_pred HHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCC
Q 006905 196 AYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLP 270 (626)
Q Consensus 196 ~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lp 270 (626)
...+.+.+.+... ++.+|||||||+|.++..++++ .++++|+++..+..+.. .+...+. .+.+..+|...+|
T Consensus 48 ~~~~~l~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~ 124 (273)
T 3bus_A 48 RLTDEMIALLDVR--SGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANA-RATAAGLANRVTFSYADAMDLP 124 (273)
T ss_dssp HHHHHHHHHSCCC--TTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEECCTTSCC
T ss_pred HHHHHHHHhcCCC--CCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHH-HHHhcCCCcceEEEECccccCC
Confidence 3444555555433 3559999999999999999874 67888887754443332 2333444 3778888888999
Q ss_pred CCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 271 YPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 271 f~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+++++||+|++..+++|+.+ ...+|.++.|+|||||++++..+
T Consensus 125 ~~~~~fD~v~~~~~l~~~~~-~~~~l~~~~~~L~pgG~l~i~~~ 167 (273)
T 3bus_A 125 FEDASFDAVWALESLHHMPD-RGRALREMARVLRPGGTVAIADF 167 (273)
T ss_dssp SCTTCEEEEEEESCTTTSSC-HHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCCCCccEEEEechhhhCCC-HHHHHHHHHHHcCCCeEEEEEEe
Confidence 99999999999999977654 58999999999999999999864
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-12 Score=133.46 Aligned_cols=116 Identities=16% Similarity=0.243 Sum_probs=89.1
Q ss_pred HHHHHHHHHhh----ccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcc
Q 006905 195 DAYIDDIGKLI----NLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV--PALIGVLA 265 (626)
Q Consensus 195 ~~yi~~L~~ll----~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d 265 (626)
....+.+.+.+ ... ++.+|||||||+|.++..|++. .++++|+++.++..+... +...+. .+.+..+|
T Consensus 64 ~~~~~~l~~~l~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~d 140 (297)
T 2o57_A 64 LRTDEWLASELAMTGVLQ--RQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEY-NNQAGLADNITVKYGS 140 (297)
T ss_dssp HHHHHHHHHHHHHTTCCC--TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHH-HHHHTCTTTEEEEECC
T ss_pred HHHHHHHHHHhhhccCCC--CCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHH-HHhcCCCcceEEEEcC
Confidence 33445555555 333 3559999999999999999875 578888877555433322 223343 47788889
Q ss_pred cccCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 266 AERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 266 ~~~Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
...+|+++++||+|++..+++|+.+ ...+|.++.|+|||||+|++..+
T Consensus 141 ~~~~~~~~~~fD~v~~~~~l~~~~~-~~~~l~~~~~~LkpgG~l~~~~~ 188 (297)
T 2o57_A 141 FLEIPCEDNSYDFIWSQDAFLHSPD-KLKVFQECARVLKPRGVMAITDP 188 (297)
T ss_dssp TTSCSSCTTCEEEEEEESCGGGCSC-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccCCCCCCCEeEEEecchhhhcCC-HHHHHHHHHHHcCCCeEEEEEEe
Confidence 9999999999999999999988765 68999999999999999999864
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.9e-12 Score=129.46 Aligned_cols=117 Identities=15% Similarity=0.154 Sum_probs=89.7
Q ss_pred HHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEccccc
Q 006905 194 ADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAER 268 (626)
Q Consensus 194 a~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~ 268 (626)
.......+.+.+.. ..++.+|||||||+|.++..+++. .++++|+++..+..+. +.+...++. +.+...|...
T Consensus 30 ~~~~~~~~l~~l~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~-~~~~~~~~~~~~~~~~~d~~~ 107 (257)
T 3f4k_A 30 SPEATRKAVSFINE-LTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFN-ENAVKANCADRVKGITGSMDN 107 (257)
T ss_dssp CHHHHHHHHTTSCC-CCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEECCTTS
T ss_pred CHHHHHHHHHHHhc-CCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHH-HHHHHcCCCCceEEEECChhh
Confidence 34455555555531 123458999999999999999886 6888888875554433 333344544 7788889999
Q ss_pred CCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 269 LPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 269 Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+|+++++||+|+|..+++|. +...++.++.|+|||||++++..+
T Consensus 108 ~~~~~~~fD~v~~~~~l~~~--~~~~~l~~~~~~L~pgG~l~~~~~ 151 (257)
T 3f4k_A 108 LPFQNEELDLIWSEGAIYNI--GFERGMNEWSKYLKKGGFIAVSEA 151 (257)
T ss_dssp CSSCTTCEEEEEEESCSCCC--CHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCCCCCCEEEEEecChHhhc--CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 99999999999999999777 468999999999999999999864
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.37 E-value=5.2e-13 Score=132.96 Aligned_cols=113 Identities=14% Similarity=0.160 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccC--
Q 006905 194 ADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERL-- 269 (626)
Q Consensus 194 a~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~L-- 269 (626)
.....+.+...++... ++.+|||||||+|.++..|++. .++++|++ +.+++.++++ +.+...|...+
T Consensus 25 ~~~~~~~~~~~l~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s-----~~~~~~a~~~---~~~~~~d~~~~~~ 95 (240)
T 3dli_A 25 RELVKARLRRYIPYFK-GCRRVLDIGCGRGEFLELCKEEGIESIGVDIN-----EDMIKFCEGK---FNVVKSDAIEYLK 95 (240)
T ss_dssp HHHHHHHHGGGGGGTT-TCSCEEEETCTTTHHHHHHHHHTCCEEEECSC-----HHHHHHHHTT---SEEECSCHHHHHH
T ss_pred HHHHHHHHHHHHhhhc-CCCeEEEEeCCCCHHHHHHHhCCCcEEEEECC-----HHHHHHHHhh---cceeeccHHHHhh
Confidence 4445555555554322 2458999999999999999886 56666664 4566677666 56666776654
Q ss_pred CCCCCCeeEEEecccccccccc-HHHHHHHHHhcccCCeEEEEEeCC
Q 006905 270 PYPSRAFDMAHCSRCLIPWNQF-GGIYLIEVDRVLRPGGYWILSGPP 315 (626)
Q Consensus 270 pf~d~sFDlV~~~~~l~h~~~~-~~~~L~Ei~RvLKPGG~lvis~pp 315 (626)
|+++++||+|+|..+++|+... ...+|.++.|+|||||++++..+.
T Consensus 96 ~~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 142 (240)
T 3dli_A 96 SLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPN 142 (240)
T ss_dssp TSCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEEC
T ss_pred hcCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 7889999999999999887642 389999999999999999998754
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.37 E-value=5.3e-12 Score=123.58 Aligned_cols=115 Identities=11% Similarity=0.088 Sum_probs=83.3
Q ss_pred HHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC------CeEEEEcc
Q 006905 196 AYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV------PALIGVLA 265 (626)
Q Consensus 196 ~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~------~~~~~v~d 265 (626)
...+.+.+.+.... ..+|||||||+|.++..|+++ .++++|+++.++..+..+.. ..+. .+.+...|
T Consensus 16 ~~~~~l~~~l~~~~--~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~~~v~~~~~d 92 (219)
T 3jwg_A 16 QRLGTVVAVLKSVN--AKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLK-IDRLPEMQRKRISLFQSS 92 (219)
T ss_dssp HHHHHHHHHHHHTT--CCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHT-GGGSCHHHHTTEEEEECC
T ss_pred HHHHHHHHHHhhcC--CCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHH-hhccccccCcceEEEeCc
Confidence 33445555554333 458999999999999999875 57888887654443332221 1122 46788888
Q ss_pred cccCCCCCCCeeEEEeccccccccccH-HHHHHHHHhcccCCeEEEEEe
Q 006905 266 AERLPYPSRAFDMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 266 ~~~Lpf~d~sFDlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~ 313 (626)
...+++++++||+|+|..+++|+.+.. ..+++++.++|||||.++...
T Consensus 93 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 141 (219)
T 3jwg_A 93 LVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTP 141 (219)
T ss_dssp SSSCCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred ccccccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEcc
Confidence 878888888999999999998875432 689999999999999666553
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.36 E-value=3.3e-12 Score=127.88 Aligned_cols=96 Identities=18% Similarity=0.180 Sum_probs=78.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHc----CCCeEEEEcccccCCCCCCCeeEEEeccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALER----GVPALIGVLAAERLPYPSRAFDMAHCSRC 284 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~er----g~~~~~~v~d~~~Lpf~d~sFDlV~~~~~ 284 (626)
++.+|||||||+|.++..|+++ .++++|+++ .+++.++++ ...+.+...|...+|+++++||+|+++.+
T Consensus 39 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~-----~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 113 (263)
T 2yqz_A 39 EEPVFLELGVGTGRIALPLIARGYRYIALDADA-----AMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHL 113 (263)
T ss_dssp SCCEEEEETCTTSTTHHHHHTTTCEEEEEESCH-----HHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESC
T ss_pred CCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCH-----HHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCc
Confidence 3569999999999999999887 567777755 444455444 34577888898899999999999999999
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEE
Q 006905 285 LIPWNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 285 l~h~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
++|+. +...++.++.|+|||||.+++.
T Consensus 114 l~~~~-~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 114 WHLVP-DWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp GGGCT-THHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhcC-CHHHHHHHHHHHCCCCcEEEEE
Confidence 95554 5689999999999999999997
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.5e-12 Score=125.60 Aligned_cols=96 Identities=13% Similarity=0.124 Sum_probs=77.7
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCCCCCCCeeEEEeccccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLPYPSRAFDMAHCSRCLIPW 288 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~ 288 (626)
+.+|||||||+|.++..|+++ .++++|+++ .+++.++++.. .+.+..+|...++++ ++||+|+|..+++|+
T Consensus 46 ~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~-----~~~~~a~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~ 119 (220)
T 3hnr_A 46 FGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSR-----EMRMIAKEKLPKEFSITEGDFLSFEVP-TSIDTIVSTYAFHHL 119 (220)
T ss_dssp CSEEEEECCTTSHHHHHHHHTTCEEEEECSCH-----HHHHHHHHHSCTTCCEESCCSSSCCCC-SCCSEEEEESCGGGS
T ss_pred CCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCH-----HHHHHHHHhCCCceEEEeCChhhcCCC-CCeEEEEECcchhcC
Confidence 558999999999999999987 456666644 55666665533 566777888888888 899999999999777
Q ss_pred cccHHH--HHHHHHhcccCCeEEEEEeC
Q 006905 289 NQFGGI--YLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 289 ~~~~~~--~L~Ei~RvLKPGG~lvis~p 314 (626)
.+ +.. +|.++.|+|||||.+++..+
T Consensus 120 ~~-~~~~~~l~~~~~~LkpgG~l~i~~~ 146 (220)
T 3hnr_A 120 TD-DEKNVAIAKYSQLLNKGGKIVFADT 146 (220)
T ss_dssp CH-HHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred Ch-HHHHHHHHHHHHhcCCCCEEEEEec
Confidence 65 444 99999999999999999864
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.36 E-value=9.9e-13 Score=131.02 Aligned_cols=104 Identities=13% Similarity=0.135 Sum_probs=78.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIP 287 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h 287 (626)
+..+|||||||+|.++..|+++ .++++|+++.++..+...........+.+...|...+++++++||+|++..+++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 158 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGH 158 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhhh
Confidence 3569999999999999998876 5788888665443332222111122356777888888888889999999999977
Q ss_pred ccccH-HHHHHHHHhcccCCeEEEEEeC
Q 006905 288 WNQFG-GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 288 ~~~~~-~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+.+.. ..+|.++.|+|||||++++..+
T Consensus 159 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 186 (241)
T 2ex4_A 159 LTDQHLAEFLRRCKGSLRPNGIIVIKDN 186 (241)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 76532 4899999999999999999764
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2.1e-12 Score=127.56 Aligned_cols=97 Identities=15% Similarity=0.096 Sum_probs=79.2
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCCCCCCCeeEEEeccccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLPYPSRAFDMAHCSRCLIPW 288 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~ 288 (626)
+.+|||||||+|.++..|+++ .++++|+++ .+++.|+++.. .+.+...|...+ +++++||+|+|..+++|+
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~-----~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~ 116 (250)
T 2p7i_A 43 PGNLLELGSFKGDFTSRLQEHFNDITCVEASE-----EAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVLEHI 116 (250)
T ss_dssp SSCEEEESCTTSHHHHHHTTTCSCEEEEESCH-----HHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCGGGC
T ss_pred CCcEEEECCCCCHHHHHHHHhCCcEEEEeCCH-----HHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHHHhh
Confidence 447999999999999999887 677777755 45556655533 577778887777 467899999999999777
Q ss_pred cccHHHHHHHHH-hcccCCeEEEEEeCC
Q 006905 289 NQFGGIYLIEVD-RVLRPGGYWILSGPP 315 (626)
Q Consensus 289 ~~~~~~~L~Ei~-RvLKPGG~lvis~pp 315 (626)
.+ +..+|+++. |+|||||++++..+.
T Consensus 117 ~~-~~~~l~~~~~~~LkpgG~l~i~~~~ 143 (250)
T 2p7i_A 117 DD-PVALLKRINDDWLAEGGRLFLVCPN 143 (250)
T ss_dssp SS-HHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred cC-HHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 54 689999999 999999999998753
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.4e-12 Score=129.62 Aligned_cols=97 Identities=13% Similarity=0.070 Sum_probs=76.4
Q ss_pred CCEEEEeCCCCchHHHHHhhCC--cEEEeCCccchHHHHHHHHHHc----------------------CCCeEEEEcccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSRN--IITMSFAPRDTHEAQVQFALER----------------------GVPALIGVLAAE 267 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~~--V~avdis~~dls~a~i~~A~er----------------------g~~~~~~v~d~~ 267 (626)
+.+|||+|||+|..+..|++++ |+++|+++.++ +.|+++ +..+.+.++|+.
T Consensus 69 ~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i-----~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~ 143 (252)
T 2gb4_A 69 GLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGI-----REFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIF 143 (252)
T ss_dssp SCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHH-----HHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTT
T ss_pred CCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHH-----HHHHHhcccccccccccccccccccccCCCceEEEECccc
Confidence 4589999999999999999985 67777766444 444322 245788889998
Q ss_pred cCCCCC-CCeeEEEeccccccccccH-HHHHHHHHhcccCCeEEEEEe
Q 006905 268 RLPYPS-RAFDMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 268 ~Lpf~d-~sFDlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~ 313 (626)
.+++++ ++||+|++..++++..... ..++.++.|+|||||.|++.+
T Consensus 144 ~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~ 191 (252)
T 2gb4_A 144 DLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAV 191 (252)
T ss_dssp TGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 888764 8999999998887776433 679999999999999997643
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.35 E-value=5.4e-12 Score=124.99 Aligned_cols=99 Identities=16% Similarity=0.127 Sum_probs=76.5
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcC------CCeEEEEcccccCCCCCCCeeEEEecc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERG------VPALIGVLAAERLPYPSRAFDMAHCSR 283 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg------~~~~~~v~d~~~Lpf~d~sFDlV~~~~ 283 (626)
..+|||||||+|.++..|++. .++++|+++. +++.++++. ..+.+.++|...++ ++++||+|+++.
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~-----~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~ 140 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMASPERFVVGLDISES-----ALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYV 140 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCBTTEEEEEECSCHH-----HHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEES
T ss_pred CCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHH-----HHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEECh
Confidence 348999999999999999887 4677777654 444444332 23678888887777 456999999999
Q ss_pred ccccccc-cHHHHHHHHHhcccCCeEEEEEeCCC
Q 006905 284 CLIPWNQ-FGGIYLIEVDRVLRPGGYWILSGPPI 316 (626)
Q Consensus 284 ~l~h~~~-~~~~~L~Ei~RvLKPGG~lvis~pp~ 316 (626)
+++++.. +...++.++.++|||||+|++...+.
T Consensus 141 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 174 (235)
T 3lcc_A 141 FFCAIEPEMRPAWAKSMYELLKPDGELITLMYPI 174 (235)
T ss_dssp STTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred hhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecc
Confidence 9977753 34889999999999999999987544
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.6e-12 Score=127.55 Aligned_cols=98 Identities=17% Similarity=0.172 Sum_probs=81.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcC--CCeEEEEcccccCCCCCCCeeEEEecccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERG--VPALIGVLAAERLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg--~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l 285 (626)
.+.+|||||||+|.++..|++. .++++|+++ .+++.++++. ..+.+..+|...+++++++||+|+|+.++
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~-----~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 118 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSE-----RMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLAL 118 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCH-----HHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEEEESCG
T ss_pred CCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCH-----HHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEEEchhh
Confidence 4569999999999999999987 466777755 4555565543 45778888999999999999999999999
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 286 IPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 286 ~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+|+ .+...+|+++.|+|||||.++++.+
T Consensus 119 ~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 146 (253)
T 3g5l_A 119 HYI-ASFDDICKKVYINLKSSGSFIFSVE 146 (253)
T ss_dssp GGC-SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhh-hhHHHHHHHHHHHcCCCcEEEEEeC
Confidence 776 5579999999999999999999853
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.34 E-value=2.9e-12 Score=129.39 Aligned_cols=98 Identities=26% Similarity=0.425 Sum_probs=80.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEeccccccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPW 288 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~ 288 (626)
.+.+|||||||+|.++..|++. .++++|+++ .+++.++++.... +...|...+|+++++||+|++..+++|+
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~-----~~l~~a~~~~~~~-~~~~d~~~~~~~~~~fD~v~~~~~~~~~ 127 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSK-----EMLEVAREKGVKN-VVEAKAEDLPFPSGAFEAVLALGDVLSY 127 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCH-----HHHHHHHHHTCSC-EEECCTTSCCSCTTCEEEEEECSSHHHH
T ss_pred CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCH-----HHHHHHHhhcCCC-EEECcHHHCCCCCCCEEEEEEcchhhhc
Confidence 4568999999999999999987 466666654 5556666554332 6677888899989999999999888888
Q ss_pred cccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 289 NQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 289 ~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
..+...+|.++.|+|||||.+++..+
T Consensus 128 ~~~~~~~l~~~~~~LkpgG~l~~~~~ 153 (260)
T 2avn_A 128 VENKDKAFSEIRRVLVPDGLLIATVD 153 (260)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccHHHHHHHHHHHcCCCeEEEEEeC
Confidence 76689999999999999999999865
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=4.3e-12 Score=127.91 Aligned_cols=110 Identities=14% Similarity=0.164 Sum_probs=84.0
Q ss_pred HHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCC
Q 006905 198 IDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSRN--IITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRA 275 (626)
Q Consensus 198 i~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~~--V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~s 275 (626)
.+.+.+++........+|||||||+|.++..|++++ ++++|+++ .+++.|+++...+.+..+|...+++ +++
T Consensus 37 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~-----~~~~~a~~~~~~~~~~~~d~~~~~~-~~~ 110 (263)
T 3pfg_A 37 AADLAALVRRHSPKAASLLDVACGTGMHLRHLADSFGTVEGLELSA-----DMLAIARRRNPDAVLHHGDMRDFSL-GRR 110 (263)
T ss_dssp HHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTSSEEEEEESCH-----HHHHHHHHHCTTSEEEECCTTTCCC-SCC
T ss_pred HHHHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCH-----HHHHHHHhhCCCCEEEECChHHCCc-cCC
Confidence 334444443222234689999999999999999874 66666654 5666776665567888889888887 789
Q ss_pred eeEEEecc-ccccccc--cHHHHHHHHHhcccCCeEEEEEe
Q 006905 276 FDMAHCSR-CLIPWNQ--FGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 276 FDlV~~~~-~l~h~~~--~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
||+|+|.. +++|+.. +...+|.++.++|||||+|++..
T Consensus 111 fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 111 FSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEP 151 (263)
T ss_dssp EEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred cCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 99999998 8877653 44789999999999999999973
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.9e-12 Score=129.57 Aligned_cols=109 Identities=18% Similarity=0.166 Sum_probs=86.5
Q ss_pred HHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCC
Q 006905 196 AYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPS 273 (626)
Q Consensus 196 ~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d 273 (626)
.+.+.+.+.+.... +.+|||||||+|.++..|++. .++++|+++ .+++.++++. .+.+.+.|...+|+++
T Consensus 21 ~~~~~l~~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~-----~~~~~a~~~~-~~~~~~~d~~~~~~~~ 92 (261)
T 3ege_A 21 RIVNAIINLLNLPK--GSVIADIGAGTGGYSVALANQGLFVYAVEPSI-----VMRQQAVVHP-QVEWFTGYAENLALPD 92 (261)
T ss_dssp HHHHHHHHHHCCCT--TCEEEEETCTTSHHHHHHHTTTCEEEEECSCH-----HHHHSSCCCT-TEEEECCCTTSCCSCT
T ss_pred HHHHHHHHHhCCCC--CCEEEEEcCcccHHHHHHHhCCCEEEEEeCCH-----HHHHHHHhcc-CCEEEECchhhCCCCC
Confidence 45566666665433 569999999999999999987 466666654 5555554444 6788888999999999
Q ss_pred CCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 274 RAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 274 ~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++||+|+|..+++|+ .+...+++++.|+|| ||++++..+
T Consensus 93 ~~fD~v~~~~~l~~~-~~~~~~l~~~~~~Lk-gG~~~~~~~ 131 (261)
T 3ege_A 93 KSVDGVISILAIHHF-SHLEKSFQEMQRIIR-DGTIVLLTF 131 (261)
T ss_dssp TCBSEEEEESCGGGC-SSHHHHHHHHHHHBC-SSCEEEEEE
T ss_pred CCEeEEEEcchHhhc-cCHHHHHHHHHHHhC-CcEEEEEEc
Confidence 999999999999777 456999999999999 998888654
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.33 E-value=5.6e-12 Score=122.51 Aligned_cols=98 Identities=23% Similarity=0.279 Sum_probs=80.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR-NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWN 289 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~-~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~ 289 (626)
++.+|||||||+|.++..+ .. .++++|+++ .+++.++++...+.+...|...+|+++++||+|++..+++|..
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-~~~~v~~vD~s~-----~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 109 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-PYPQKVGVEPSE-----AMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVE 109 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-CCSEEEEECCCH-----HHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCS
T ss_pred CCCeEEEECCCCCHhHHhC-CCCeEEEEeCCH-----HHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcC
Confidence 4669999999999999988 44 678887765 4555666554456777788888999999999999999997765
Q ss_pred ccHHHHHHHHHhcccCCeEEEEEeCC
Q 006905 290 QFGGIYLIEVDRVLRPGGYWILSGPP 315 (626)
Q Consensus 290 ~~~~~~L~Ei~RvLKPGG~lvis~pp 315 (626)
++..++.++.|+|||||.++++.+.
T Consensus 110 -~~~~~l~~~~~~L~pgG~l~i~~~~ 134 (211)
T 2gs9_A 110 -DVERVLLEARRVLRPGGALVVGVLE 134 (211)
T ss_dssp -CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -CHHHHHHHHHHHcCCCCEEEEEecC
Confidence 5689999999999999999998753
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=9.8e-12 Score=118.96 Aligned_cols=109 Identities=15% Similarity=0.242 Sum_probs=82.9
Q ss_pred HHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCCCCCCCee
Q 006905 201 IGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLPYPSRAFD 277 (626)
Q Consensus 201 L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lpf~d~sFD 277 (626)
+.+.+.... +.+|||+|||+|.++..|++. .++++|+++..+..+.... ...+. .+.+...|...+++ +++||
T Consensus 24 l~~~~~~~~--~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~~d~~~~~~-~~~~D 99 (199)
T 2xvm_A 24 VLEAVKVVK--PGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIK-SIENLDNLHTRVVDLNNLTF-DRQYD 99 (199)
T ss_dssp HHHHTTTSC--SCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-HHHTCTTEEEEECCGGGCCC-CCCEE
T ss_pred HHHHhhccC--CCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHH-HhCCCCCcEEEEcchhhCCC-CCCce
Confidence 444444333 459999999999999999887 5788888775554443332 23344 57788888888888 78999
Q ss_pred EEEeccccccccc-cHHHHHHHHHhcccCCeEEEEEe
Q 006905 278 MAHCSRCLIPWNQ-FGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 278 lV~~~~~l~h~~~-~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+|+++.+++|+.. +...++.++.++|||||++++..
T Consensus 100 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 136 (199)
T 2xvm_A 100 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA 136 (199)
T ss_dssp EEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 9999999977753 34889999999999999988864
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.4e-12 Score=129.49 Aligned_cols=112 Identities=19% Similarity=0.131 Sum_probs=83.9
Q ss_pred HHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCC-CCCCC
Q 006905 201 IGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLP-YPSRA 275 (626)
Q Consensus 201 L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lp-f~d~s 275 (626)
+.+++......+.+|||||||+|.++..|++. .++++|+++.++..+... +...++ .+.+..+|...++ +++++
T Consensus 58 l~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~ 136 (285)
T 4htf_A 58 LDRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQA-AEAKGVSDNMQFIHCAAQDVASHLETP 136 (285)
T ss_dssp HHHHHHHTCSSCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHC-CCGGGEEEEESCGGGTGGGCSSC
T ss_pred HHHHHHhcCCCCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHH-HHhcCCCcceEEEEcCHHHhhhhcCCC
Confidence 44444433333568999999999999999987 577777776544433322 223343 3677888888887 78899
Q ss_pred eeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 276 FDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 276 FDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
||+|+|..+++|+. ++..+|.++.|+|||||++++..+
T Consensus 137 fD~v~~~~~l~~~~-~~~~~l~~~~~~LkpgG~l~~~~~ 174 (285)
T 4htf_A 137 VDLILFHAVLEWVA-DPRSVLQTLWSVLRPGGVLSLMFY 174 (285)
T ss_dssp EEEEEEESCGGGCS-CHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ceEEEECchhhccc-CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 99999999997765 468999999999999999999854
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.32 E-value=7e-12 Score=123.82 Aligned_cols=118 Identities=19% Similarity=0.241 Sum_probs=89.2
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCC
Q 006905 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYP 272 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~ 272 (626)
....+.+.+++.....+..+|||+|||+|.++..|++. .++++|+++.++..+..+. ...+..+.+...|...++++
T Consensus 21 ~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~ 99 (246)
T 1y8c_A 21 KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKF-RSQGLKPRLACQDISNLNIN 99 (246)
T ss_dssp HHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHH-HHTTCCCEEECCCGGGCCCS
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHH-hhcCCCeEEEecccccCCcc
Confidence 44556666666544334569999999999999999887 5778888775554433332 23344677888888888877
Q ss_pred CCCeeEEEecc-cccccc--ccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 273 SRAFDMAHCSR-CLIPWN--QFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 273 d~sFDlV~~~~-~l~h~~--~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++||+|+++. +++|+. .+...+|.++.++|||||.++++.+
T Consensus 100 -~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (246)
T 1y8c_A 100 -RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp -CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred -CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 8899999998 997774 3457899999999999999999754
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=3.8e-12 Score=124.18 Aligned_cols=99 Identities=14% Similarity=0.305 Sum_probs=78.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcC---CCeEEEEcccccCCCCCCCeeEEEecccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERG---VPALIGVLAAERLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg---~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l 285 (626)
...+|||||||+|.++..|++. .++++|+++. +++.++++. ..+.+...|...++ ++++||+|+|+.++
T Consensus 51 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~-----~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l 124 (216)
T 3ofk_A 51 AVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPR-----AIGRACQRTKRWSHISWAATDILQFS-TAELFDLIVVAEVL 124 (216)
T ss_dssp SEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHH-----HHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEEEEEEESCG
T ss_pred CCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHH-----HHHHHHHhcccCCCeEEEEcchhhCC-CCCCccEEEEccHH
Confidence 3568999999999999999987 5777777654 444554432 25678888888888 67899999999999
Q ss_pred ccccccH--HHHHHHHHhcccCCeEEEEEeCC
Q 006905 286 IPWNQFG--GIYLIEVDRVLRPGGYWILSGPP 315 (626)
Q Consensus 286 ~h~~~~~--~~~L~Ei~RvLKPGG~lvis~pp 315 (626)
+|+.+.. ..+|.++.++|||||+++++.+.
T Consensus 125 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 125 YYLEDMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp GGSSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred HhCCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 7776432 57899999999999999998653
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.2e-12 Score=124.37 Aligned_cols=98 Identities=19% Similarity=0.217 Sum_probs=76.8
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWN 289 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~ 289 (626)
+.+|||||||+|.++..|+++ .++++|+++ .+++.++++. .+.+..++...++ ++++||+|+|+.+++|+.
T Consensus 44 ~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~-----~~~~~a~~~~-~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~ 116 (211)
T 3e23_A 44 GAKILELGCGAGYQAEAMLAAGFDVDATDGSP-----ELAAEASRRL-GRPVRTMLFHQLD-AIDAYDAVWAHACLLHVP 116 (211)
T ss_dssp TCEEEESSCTTSHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHH-TSCCEECCGGGCC-CCSCEEEEEECSCGGGSC
T ss_pred CCcEEEECCCCCHHHHHHHHcCCeEEEECCCH-----HHHHHHHHhc-CCceEEeeeccCC-CCCcEEEEEecCchhhcC
Confidence 458999999999999999987 566777655 4555555441 2345566777888 788999999999998876
Q ss_pred c-cHHHHHHHHHhcccCCeEEEEEeCCC
Q 006905 290 Q-FGGIYLIEVDRVLRPGGYWILSGPPI 316 (626)
Q Consensus 290 ~-~~~~~L~Ei~RvLKPGG~lvis~pp~ 316 (626)
. +...+|+++.|+|||||++++..++.
T Consensus 117 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 144 (211)
T 3e23_A 117 RDELADVLKLIWRALKPGGLFYASYKSG 144 (211)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEcCC
Confidence 3 34789999999999999999986543
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.6e-12 Score=126.72 Aligned_cols=107 Identities=18% Similarity=0.165 Sum_probs=84.0
Q ss_pred HHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCC
Q 006905 199 DDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSR 274 (626)
Q Consensus 199 ~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~ 274 (626)
..+.+.+.. ..+.+|||||||+|.++..++++ .++++|+++ .+++.++++...+.+...|...++ +++
T Consensus 23 ~~l~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~-----~~~~~a~~~~~~~~~~~~d~~~~~-~~~ 94 (259)
T 2p35_A 23 RDLLAQVPL--ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDD-----DMLEKAADRLPNTNFGKADLATWK-PAQ 94 (259)
T ss_dssp HHHHTTCCC--SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCH-----HHHHHHHHHSTTSEEEECCTTTCC-CSS
T ss_pred HHHHHhcCC--CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCH-----HHHHHHHHhCCCcEEEECChhhcC-ccC
Confidence 344444433 23458999999999999988875 688888765 455566655556788888988888 788
Q ss_pred CeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 275 AFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 275 sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+||+|+++.+++|+ .+...+|.++.|+|||||++++..+
T Consensus 95 ~fD~v~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l~~~~~ 133 (259)
T 2p35_A 95 KADLLYANAVFQWV-PDHLAVLSQLMDQLESGGVLAVQMP 133 (259)
T ss_dssp CEEEEEEESCGGGS-TTHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred CcCEEEEeCchhhC-CCHHHHHHHHHHhcCCCeEEEEEeC
Confidence 99999999999555 5578999999999999999999864
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-11 Score=121.05 Aligned_cols=102 Identities=21% Similarity=0.294 Sum_probs=79.6
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWN 289 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~ 289 (626)
..+|||+|||+|.++..++++ .++++|+++..+..+... ....+..+.+...|...+++++++||+|+++.+++++.
T Consensus 39 ~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~ 117 (227)
T 1ve3_A 39 RGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREY-AKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFE 117 (227)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCC
T ss_pred CCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHH-HHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHhCC
Confidence 568999999999999999887 578888877554433332 23334567888888888888888999999998843332
Q ss_pred -ccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 290 -QFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 290 -~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.+...++.++.++|||||.+++..+
T Consensus 118 ~~~~~~~l~~~~~~L~~gG~l~~~~~ 143 (227)
T 1ve3_A 118 PLELNQVFKEVRRVLKPSGKFIMYFT 143 (227)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 3447899999999999999999864
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.31 E-value=7.1e-12 Score=122.65 Aligned_cols=114 Identities=15% Similarity=0.116 Sum_probs=83.1
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC------CeEEEEccc
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV------PALIGVLAA 266 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~------~~~~~v~d~ 266 (626)
..+.+.+.+.... ..+|||||||+|.++..|+++ .++++|+++.++..+..+. ...+. .+.+..+|.
T Consensus 17 ~~~~l~~~l~~~~--~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~-~~~~~~~~~~~~v~~~~~d~ 93 (217)
T 3jwh_A 17 RMNGVVAALKQSN--ARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERL-DRLRLPRNQWERLQLIQGAL 93 (217)
T ss_dssp HHHHHHHHHHHTT--CCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHH-TTCCCCHHHHTTEEEEECCT
T ss_pred HHHHHHHHHHhcC--CCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHH-HHhcCCcccCcceEEEeCCc
Confidence 3445555555443 458999999999999999875 5788888775444333222 12222 477778888
Q ss_pred ccCCCCCCCeeEEEeccccccccccH-HHHHHHHHhcccCCeEEEEEe
Q 006905 267 ERLPYPSRAFDMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 267 ~~Lpf~d~sFDlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~ 313 (626)
..+++++++||+|+|+.+++|+.+.. ..+++++.|+|||||.+++..
T Consensus 94 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 94 TYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp TSCCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred ccccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 77777778999999999998775422 789999999999999777753
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.31 E-value=1e-11 Score=122.67 Aligned_cols=113 Identities=12% Similarity=0.170 Sum_probs=84.6
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC---CeEEEEcccc
Q 006905 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV---PALIGVLAAE 267 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~---~~~~~v~d~~ 267 (626)
....+.+.+++.. ..++.+|||||||+|.++..+++. .++++|+++ .+++.++++.. .+.+...|..
T Consensus 29 ~~~~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~-----~~~~~a~~~~~~~~~~~~~~~d~~ 102 (234)
T 3dtn_A 29 DDFYGVSVSIASV-DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSE-----KMLEIAKNRFRGNLKVKYIEADYS 102 (234)
T ss_dssp HHHHHHHHHTCCC-SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCH-----HHHHHHHHHTCSCTTEEEEESCTT
T ss_pred HHHHHHHHHHhhc-CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCH-----HHHHHHHHhhccCCCEEEEeCchh
Confidence 3344455555542 234569999999999999999886 567777765 44445544421 5778888998
Q ss_pred cCCCCCCCeeEEEeccccccccccH-HHHHHHHHhcccCCeEEEEEeC
Q 006905 268 RLPYPSRAFDMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 268 ~Lpf~d~sFDlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.++++ ++||+|++..+++|+.+.. ..+|+++.|+|||||.+++..+
T Consensus 103 ~~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 149 (234)
T 3dtn_A 103 KYDFE-EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADL 149 (234)
T ss_dssp TCCCC-SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccCCC-CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 88887 8999999999997775432 3699999999999999999864
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.7e-11 Score=116.86 Aligned_cols=103 Identities=13% Similarity=0.107 Sum_probs=73.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCC-CCCCCeeEEEeccccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLP-YPSRAFDMAHCSRCLI 286 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lp-f~d~sFDlV~~~~~l~ 286 (626)
++.+|||+|||+|.++..|+++ .|+++|+++.++..+..+.. +.+. .+.+...+...++ +.+++||+|+++....
T Consensus 22 ~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~ 100 (185)
T 3mti_A 22 DESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLS-DLGIENTELILDGHENLDHYVREPIRAAIFNLGYL 100 (185)
T ss_dssp TTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHH-HHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC--
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHH-HcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCCC
Confidence 4569999999999999999986 68888888866654443333 3343 4566665555543 4578899999874332
Q ss_pred cc--------cccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 287 PW--------NQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 287 h~--------~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+. ......++.++.|+|||||.+++...
T Consensus 101 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 136 (185)
T 3mti_A 101 PSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY 136 (185)
T ss_dssp ---------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence 32 22335789999999999999999864
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=9.8e-12 Score=129.06 Aligned_cols=101 Identities=16% Similarity=0.143 Sum_probs=82.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEcccccCCCCCCCeeEEEecccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAERLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~Lpf~d~sFDlV~~~~~l 285 (626)
++.+|||||||+|.++..|+++ .++++|+++.++..+.. .+...++. +.+..+|...+|+++++||+|++..++
T Consensus 117 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 195 (312)
T 3vc1_A 117 PDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNR-RARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNEST 195 (312)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEESCG
T ss_pred CCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-HHHHcCCCCceEEEECChhcCCCCCCCEeEEEECCch
Confidence 3569999999999999999876 67888887755543332 33344543 788888999999999999999999999
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 286 IPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 286 ~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+|+ + ...+|.++.|+|||||++++..+
T Consensus 196 ~~~-~-~~~~l~~~~~~LkpgG~l~~~~~ 222 (312)
T 3vc1_A 196 MYV-D-LHDLFSEHSRFLKVGGRYVTITG 222 (312)
T ss_dssp GGS-C-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhC-C-HHHHHHHHHHHcCCCcEEEEEEc
Confidence 777 3 79999999999999999999864
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.30 E-value=6.7e-12 Score=127.87 Aligned_cols=105 Identities=14% Similarity=0.180 Sum_probs=81.7
Q ss_pred HHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeE
Q 006905 201 IGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDM 278 (626)
Q Consensus 201 L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDl 278 (626)
+.+.+... ++.+|||||||+|.++..|++. .++++|+++ .+++.++++...+.+.++|...+|+ +++||+
T Consensus 49 l~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~-----~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~ 120 (279)
T 3ccf_A 49 LLQLLNPQ--PGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAA-----TMIEKARQNYPHLHFDVADARNFRV-DKPLDA 120 (279)
T ss_dssp HHHHHCCC--TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHCTTSCEEECCTTTCCC-SSCEEE
T ss_pred HHHHhCCC--CCCEEEEecCCCCHHHHHHHhCCCeEEEEECCH-----HHHHHHHhhCCCCEEEECChhhCCc-CCCcCE
Confidence 44444433 3558999999999999999886 566776655 5555666554456777888888887 579999
Q ss_pred EEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 279 AHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 279 V~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
|+++.+++|+ .++..+|.++.|+|||||++++..+
T Consensus 121 v~~~~~l~~~-~d~~~~l~~~~~~LkpgG~l~~~~~ 155 (279)
T 3ccf_A 121 VFSNAMLHWV-KEPEAAIASIHQALKSGGRFVAEFG 155 (279)
T ss_dssp EEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEcchhhhC-cCHHHHHHHHHHhcCCCcEEEEEec
Confidence 9999999555 4578999999999999999999864
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=8.9e-12 Score=120.97 Aligned_cols=108 Identities=12% Similarity=0.088 Sum_probs=83.2
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcC-CCeEEEEcccccCCCCCCCe
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERG-VPALIGVLAAERLPYPSRAF 276 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg-~~~~~~v~d~~~Lpf~d~sF 276 (626)
.+.+.+.. ...+.+|||||||+|.++..|+++ .++++|+++ .+++.+++.+ ..+.+...|...+ +++++|
T Consensus 36 ~~~~~l~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~-----~~~~~a~~~~~~~~~~~~~d~~~~-~~~~~~ 108 (218)
T 3ou2_A 36 AALERLRA-GNIRGDVLELASGTGYWTRHLSGLADRVTALDGSA-----EMIAEAGRHGLDNVEFRQQDLFDW-TPDRQW 108 (218)
T ss_dssp HHHHHHTT-TTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCH-----HHHHHHGGGCCTTEEEEECCTTSC-CCSSCE
T ss_pred HHHHHHhc-CCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCH-----HHHHHHHhcCCCCeEEEecccccC-CCCCce
Confidence 44444432 122458999999999999999887 566666644 5666666666 4577888888777 788999
Q ss_pred eEEEecccccccccc-HHHHHHHHHhcccCCeEEEEEeC
Q 006905 277 DMAHCSRCLIPWNQF-GGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 277 DlV~~~~~l~h~~~~-~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
|+|+|+.+++|+.+. ...+|+++.|+|||||.+++..+
T Consensus 109 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 147 (218)
T 3ou2_A 109 DAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDV 147 (218)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 999999999777653 27899999999999999999864
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.9e-12 Score=130.07 Aligned_cols=118 Identities=15% Similarity=0.186 Sum_probs=87.2
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcC----CCeEEEEccccc
Q 006905 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERG----VPALIGVLAAER 268 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg----~~~~~~v~d~~~ 268 (626)
..+.+.+.+.+.... ..+|||||||+|.++..|+++ .++++|+++.++..+..+....+. ..+.+...+...
T Consensus 43 ~~~~~~l~~~l~~~~--~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~ 120 (293)
T 3thr_A 43 AEYKAWLLGLLRQHG--CHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT 120 (293)
T ss_dssp HHHHHHHHHHHHHTT--CCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG
T ss_pred HHHHHHHHHHhcccC--CCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhh
Confidence 556666777766543 458999999999999999998 577888776555443332211111 235566777777
Q ss_pred CC---CCCCCeeEEEec-cccccccc------cHHHHHHHHHhcccCCeEEEEEeC
Q 006905 269 LP---YPSRAFDMAHCS-RCLIPWNQ------FGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 269 Lp---f~d~sFDlV~~~-~~l~h~~~------~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++ +++++||+|+|. .+++|+.+ +...+|+++.|+|||||+|++..+
T Consensus 121 ~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 121 LDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp HHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 77 888999999998 88877765 147899999999999999999865
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.7e-11 Score=117.68 Aligned_cols=135 Identities=14% Similarity=0.080 Sum_probs=92.4
Q ss_pred cCCceecCCCCCCCCCcHHHHHHHHHHhhcc-CCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHH
Q 006905 177 EGDRFRFPGGGTMFPNGADAYIDDIGKLINL-NDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFA 252 (626)
Q Consensus 177 ~ge~~~Fp~ggt~F~~ga~~yi~~L~~ll~l-~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A 252 (626)
.|..+..|. ..+....+...+.+.+.+.. ...++.+|||+|||+|.++..++++ .++++|+++.++..+..+.
T Consensus 11 ~g~~l~~~~--~~~rp~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~- 87 (189)
T 3p9n_A 11 GGRRIAVPP--RGTRPTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNI- 87 (189)
T ss_dssp TTCEEECCS--CCC---CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHH-
T ss_pred CCcEecCCC--CCCccCcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHH-
Confidence 345555655 22333445555566665542 1233568999999999999977775 4889999886665444433
Q ss_pred HHcCC-CeEEEEcccccCC--CCCCCeeEEEeccccccccccHHHHHHHHHh--cccCCeEEEEEeC
Q 006905 253 LERGV-PALIGVLAAERLP--YPSRAFDMAHCSRCLIPWNQFGGIYLIEVDR--VLRPGGYWILSGP 314 (626)
Q Consensus 253 ~erg~-~~~~~v~d~~~Lp--f~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~R--vLKPGG~lvis~p 314 (626)
...+. .+.+..+|...++ +++++||+|+++..+++...+...++.++.+ +|+|||.+++..+
T Consensus 88 ~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~ 154 (189)
T 3p9n_A 88 EALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERA 154 (189)
T ss_dssp HHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred HHcCCCceEEEEccHHHHHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEec
Confidence 33444 5777888866653 4578999999998774443555889999999 9999999999864
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.29 E-value=8e-12 Score=126.61 Aligned_cols=102 Identities=19% Similarity=0.313 Sum_probs=81.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCCCCCCCeeEEEecccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lpf~d~sFDlV~~~~~l 285 (626)
++.+|||||||+|.++..++++ .++++|+++..+..+... +...++ .+.+...|...+++++++||+|+++.++
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 115 (276)
T 3mgg_A 37 PGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKAREN-TEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVL 115 (276)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHH-HHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESCG
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEcccccCCCCCCCeeEEEEechh
Confidence 4569999999999999999876 578888877555433332 333444 4778888888999999999999999999
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 286 IPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 286 ~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+|+.+ +..++.++.|+|||||++++..+
T Consensus 116 ~~~~~-~~~~l~~~~~~L~pgG~l~~~~~ 143 (276)
T 3mgg_A 116 EHLQS-PEEALKSLKKVLKPGGTITVIEG 143 (276)
T ss_dssp GGCSC-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhcCC-HHHHHHHHHHHcCCCcEEEEEEc
Confidence 77654 68999999999999999999864
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.29 E-value=8.9e-12 Score=128.35 Aligned_cols=112 Identities=14% Similarity=0.161 Sum_probs=84.9
Q ss_pred HHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhh---C--CcEEEeCCccchHHHHHHHHHH--cCCCeEEEEccccc
Q 006905 196 AYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLS---R--NIITMSFAPRDTHEAQVQFALE--RGVPALIGVLAAER 268 (626)
Q Consensus 196 ~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~---~--~V~avdis~~dls~a~i~~A~e--rg~~~~~~v~d~~~ 268 (626)
.+.+.|..+.. .++.+|||||||+|.++..|++ . .++++|+++.++..+....... ....+.+.++|...
T Consensus 24 ~~~~~l~~~~~---~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 100 (299)
T 3g5t_A 24 DFYKMIDEYHD---GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDD 100 (299)
T ss_dssp HHHHHHHHHCC---SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTC
T ss_pred HHHHHHHHHhc---CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHh
Confidence 34444554432 3466999999999999999994 3 6788888775554433332221 14467888899988
Q ss_pred CCCCC------CCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEE
Q 006905 269 LPYPS------RAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 269 Lpf~d------~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
+++++ ++||+|+|+.+++|+ +...++.++.|+|||||.|++.
T Consensus 101 ~~~~~~~~~~~~~fD~V~~~~~l~~~--~~~~~l~~~~~~LkpgG~l~i~ 148 (299)
T 3g5t_A 101 FKFLGADSVDKQKIDMITAVECAHWF--DFEKFQRSAYANLRKDGTIAIW 148 (299)
T ss_dssp CGGGCTTTTTSSCEEEEEEESCGGGS--CHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCccccccccCCCeeEEeHhhHHHHh--CHHHHHHHHHHhcCCCcEEEEE
Confidence 88877 899999999999666 6799999999999999999994
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.6e-11 Score=121.45 Aligned_cols=107 Identities=18% Similarity=0.256 Sum_probs=83.8
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCCCCCC
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLPYPSR 274 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lpf~d~ 274 (626)
.+.+++... ++.+|||||||+|.++..++++ .++++|+++ .+++.++++.. .+.+...|...++++++
T Consensus 34 ~l~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~-----~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~ 106 (243)
T 3bkw_A 34 ALRAMLPEV--GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSE-----KMLARARAAGPDTGITYERADLDKLHLPQD 106 (243)
T ss_dssp HHHHHSCCC--TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCH-----HHHHHHHHTSCSSSEEEEECCGGGCCCCTT
T ss_pred HHHHhcccc--CCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCH-----HHHHHHHHhcccCCceEEEcChhhccCCCC
Confidence 345555432 3568999999999999999887 456666644 56666666543 46777888888888889
Q ss_pred CeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 275 AFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 275 sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+||+|++..+++|+. +...+|.++.++|||||+++++.+
T Consensus 107 ~fD~v~~~~~l~~~~-~~~~~l~~~~~~L~pgG~l~~~~~ 145 (243)
T 3bkw_A 107 SFDLAYSSLALHYVE-DVARLFRTVHQALSPGGHFVFSTE 145 (243)
T ss_dssp CEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CceEEEEeccccccc-hHHHHHHHHHHhcCcCcEEEEEeC
Confidence 999999999997765 568999999999999999999863
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-11 Score=126.35 Aligned_cols=100 Identities=13% Similarity=0.186 Sum_probs=76.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCCCCCCCeeEEEecccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lpf~d~sFDlV~~~~~l 285 (626)
++.+|||||||+|.++..+++. .++++|+++..+..+.. .+...+. .+.+...|...+| ++||+|++..++
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~---~~fD~v~~~~~l 139 (287)
T 1kpg_A 64 PGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQ-LVANSENLRSKRVLLAGWEQFD---EPVDRIVSIGAF 139 (287)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHH-HHHTCCCCSCEEEEESCGGGCC---CCCSEEEEESCG
T ss_pred CcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHH-HHHhcCCCCCeEEEECChhhCC---CCeeEEEEeCch
Confidence 3569999999999999998853 67788876644433222 2222233 4677777877766 789999999999
Q ss_pred cccc-ccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 286 IPWN-QFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 286 ~h~~-~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+|+. .+...+|.++.|+|||||.+++..+
T Consensus 140 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 169 (287)
T 1kpg_A 140 EHFGHERYDAFFSLAHRLLPADGVMLLHTI 169 (287)
T ss_dssp GGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred hhcChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 8885 3458999999999999999999864
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=5.8e-13 Score=143.85 Aligned_cols=115 Identities=14% Similarity=0.162 Sum_probs=85.4
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCCCeEE---EEcccccCCC
Q 006905 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSRNIITMSFAPRDTHEAQVQFALERGVPALI---GVLAAERLPY 271 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~~V~avdis~~dls~a~i~~A~erg~~~~~---~v~d~~~Lpf 271 (626)
..+.+.+.+.+... ++.+|||||||+|.++..|++++..++.+ |+++.+++.|++++.+... ...+...+|+
T Consensus 93 ~~~~~~l~~~~~~~--~~~~VLDiGcG~G~~~~~l~~~g~~v~gv---D~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 167 (416)
T 4e2x_A 93 AMLARDFLATELTG--PDPFIVEIGCNDGIMLRTIQEAGVRHLGF---EPSSGVAAKAREKGIRVRTDFFEKATADDVRR 167 (416)
T ss_dssp HHHHHHHHHTTTCS--SSCEEEEETCTTTTTHHHHHHTTCEEEEE---CCCHHHHHHHHTTTCCEECSCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC--CCCEEEEecCCCCHHHHHHHHcCCcEEEE---CCCHHHHHHHHHcCCCcceeeechhhHhhccc
Confidence 33444555554433 35599999999999999999985444433 4455677788887765442 1233556677
Q ss_pred CCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 006905 272 PSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPP 315 (626)
Q Consensus 272 ~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~pp 315 (626)
++++||+|+++.+++|+. ++..+|+++.|+|||||+|++..+.
T Consensus 168 ~~~~fD~I~~~~vl~h~~-d~~~~l~~~~r~LkpgG~l~i~~~~ 210 (416)
T 4e2x_A 168 TEGPANVIYAANTLCHIP-YVQSVLEGVDALLAPDGVFVFEDPY 210 (416)
T ss_dssp HHCCEEEEEEESCGGGCT-THHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCCEEEEEECChHHhcC-CHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 789999999999998886 5799999999999999999998653
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.3e-11 Score=142.56 Aligned_cols=122 Identities=16% Similarity=0.170 Sum_probs=78.9
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc----cceec-cccccCCCCCCccceeeeccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL----VGTYT-NWCEAMSTYPRTYDLIHADSV 541 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl----i~~~~-~~~e~~~~yp~t~Dlih~~~~ 541 (626)
.+|||+|||+|+|+.+++..+. -.|+.+|.++.+++.+.++ |+ +.+++ |..+-+.....+||+|.++--
T Consensus 541 ~~VLDlg~GtG~~sl~aa~~ga--~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP 618 (703)
T 3v97_A 541 KDFLNLFSYTGSATVHAGLGGA--RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPP 618 (703)
T ss_dssp CEEEEESCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCC
T ss_pred CcEEEeeechhHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCc
Confidence 3699999999999999988765 2588999999999988765 33 12222 221111223479999998652
Q ss_pred -cccCC-------CCCCHHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHhCCCeeEEe
Q 006905 542 -FSLYK-------DRCETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQIV 594 (626)
Q Consensus 542 -f~~~~-------~~c~~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~l~w~~~~~ 594 (626)
|.... ..-+...++.++-|+|+|||+++++-.......-.+.+....++...+
T Consensus 619 ~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~~~~~l~~~g~~~~~i 679 (703)
T 3v97_A 619 TFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLGLKAQEI 679 (703)
T ss_dssp SBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCCCHHHHHHTTEEEEEC
T ss_pred cccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccCHHHHHHcCCceeee
Confidence 22111 112446789999999999999999865422122234455566664443
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=5.2e-12 Score=129.93 Aligned_cols=102 Identities=9% Similarity=-0.006 Sum_probs=70.8
Q ss_pred CCCEEEEeCCCCchHHHH----HhhC--Cc----EEEeCCccchHHHHHHHHHHcCCC-e--EEEEcccccCC------C
Q 006905 211 SIRTAIDTGCGVASWGAY----LLSR--NI----ITMSFAPRDTHEAQVQFALERGVP-A--LIGVLAAERLP------Y 271 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~----La~~--~V----~avdis~~dls~a~i~~A~erg~~-~--~~~v~d~~~Lp------f 271 (626)
++.+|||||||+|.++.. ++.+ ++ +++|+++.++..+..+.+...+++ + .+...+.+.++ +
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 131 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK 131 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence 456899999999976543 3332 33 788887766654443333222332 2 23344444443 6
Q ss_pred CCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 272 PSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 272 ~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
++++||+|+|+.+++|+. ++..+|+++.|+|||||+|++..
T Consensus 132 ~~~~fD~V~~~~~l~~~~-d~~~~l~~~~r~LkpgG~l~i~~ 172 (292)
T 2aot_A 132 ELQKWDFIHMIQMLYYVK-DIPATLKFFHSLLGTNAKMLIIV 172 (292)
T ss_dssp CCCCEEEEEEESCGGGCS-CHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCceeEEEEeeeeeecC-CHHHHHHHHHHHcCCCcEEEEEE
Confidence 788999999999996654 57999999999999999999975
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.26 E-value=6.2e-11 Score=112.32 Aligned_cols=134 Identities=13% Similarity=0.123 Sum_probs=90.9
Q ss_pred cCCceecCCCCCCCCCc-HHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHH
Q 006905 177 EGDRFRFPGGGTMFPNG-ADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFAL 253 (626)
Q Consensus 177 ~ge~~~Fp~ggt~F~~g-a~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~ 253 (626)
.+..+.|......|... .+...+.+.+.+... ++.+|||+|||+|.++..+++. .++++|+++..+..+... +.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~-~~ 95 (194)
T 1dus_A 19 RGKKLKFKTDSGVFSYGKVDKGTKILVENVVVD--KDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKEN-IK 95 (194)
T ss_dssp TTEEEEEEEETTSTTTTSCCHHHHHHHHHCCCC--TTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH-HH
T ss_pred CCCceEEEeCCCcCCccccchHHHHHHHHcccC--CCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHH-HH
Confidence 34445553333333333 224445566666543 3558999999999999999876 678888877555443332 23
Q ss_pred HcCCC---eEEEEcccccCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 254 ERGVP---ALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 254 erg~~---~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
..+.+ +.+...|... ++++++||+|+++..+++.......++.++.++|+|||.+++..+
T Consensus 96 ~~~~~~~~~~~~~~d~~~-~~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 158 (194)
T 1dus_A 96 LNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp HTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HcCCCccceEEEECchhc-ccccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 33544 6777777655 345778999999988754344457899999999999999999865
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.3e-11 Score=117.60 Aligned_cols=102 Identities=16% Similarity=0.164 Sum_probs=78.9
Q ss_pred CCEEEEeCCCCchH-HHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEeccccccc
Q 006905 212 IRTAIDTGCGVASW-GAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPW 288 (626)
Q Consensus 212 ~~~VLDIGCGtG~~-a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~ 288 (626)
..+|||+|||+|.+ ...++.. .++++|+++.++..+... +...+..+.+...|...+++++++||+|++..+++|+
T Consensus 24 ~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 102 (209)
T 2p8j_A 24 DKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENF-SRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFHM 102 (209)
T ss_dssp CSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHH-HHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGGGS
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHH-HHhcCCceEEEECchhhCCCCCCceeEEEEcChHHhC
Confidence 45899999999987 4444444 588888877655544333 2334456677788888899988999999999999787
Q ss_pred c-ccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 289 N-QFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 289 ~-~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
. .+...++.++.|+|||||++++..+
T Consensus 103 ~~~~~~~~l~~~~~~LkpgG~l~~~~~ 129 (209)
T 2p8j_A 103 RKNDVKEAIDEIKRVLKPGGLACINFL 129 (209)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 4 3458899999999999999999864
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.6e-11 Score=118.02 Aligned_cols=136 Identities=17% Similarity=0.192 Sum_probs=102.3
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceeccccccC---CCCC-CccceeeeccccccC
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAM---STYP-RTYDLIHADSVFSLY 545 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~---~~yp-~t~Dlih~~~~f~~~ 545 (626)
-.+|||+|||.|.++..|++.+. +|+.+|.++.+++.+.+++.+.....-.+.+ ...+ .+||+|.+..++. .
T Consensus 53 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-~ 128 (227)
T 3e8s_A 53 PERVLDLGCGEGWLLRALADRGI---EAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALL-H 128 (227)
T ss_dssp CSEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-S
T ss_pred CCEEEEeCCCCCHHHHHHHHCCC---EEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhh-h
Confidence 37899999999999999999976 7999999999999999997655544222333 2234 5699999998888 3
Q ss_pred CCCCCHHHHHHHhhhhccCCcEEEEEcCh--------------------------------HHHHHHHHHHHhCCCeeEE
Q 006905 546 KDRCETEDILLEMDRILRPEGGVIFRDDV--------------------------------DELVKVKRIIDALKWQSQI 593 (626)
Q Consensus 546 ~~~c~~~~~l~E~dRiLRPgG~~i~~d~~--------------------------------~~~~~~~~~~~~l~w~~~~ 593 (626)
.+...+|.++.|+|||||++++.+.. -....+.++++.-.+++.-
T Consensus 129 ---~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 205 (227)
T 3e8s_A 129 ---QDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLVS 205 (227)
T ss_dssp ---SCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEEE
T ss_pred ---hhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEEE
Confidence 36689999999999999999997531 0468889999999998875
Q ss_pred eecCCCCC---CcceEEEEEec
Q 006905 594 VDHEDGPL---EREKLLFAVKL 612 (626)
Q Consensus 594 ~~~e~~~~---~~e~~l~~~K~ 612 (626)
+.....+. ...-+++++|+
T Consensus 206 ~~~~~~~~~~~~~~~~~va~k~ 227 (227)
T 3e8s_A 206 LQEPQHPQSAVPQSLLMVAERH 227 (227)
T ss_dssp EECCCCTTCSSCSCEEEEEEEC
T ss_pred EecCCCCCCCCceeEEEEeecC
Confidence 43321111 13456777774
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.25 E-value=3.2e-11 Score=123.51 Aligned_cols=116 Identities=16% Similarity=0.152 Sum_probs=86.3
Q ss_pred HHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCC
Q 006905 196 AYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLP 270 (626)
Q Consensus 196 ~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lp 270 (626)
.++..+.+.+. ...++.+|||||||+|.++..|++. .++++|+++..+..+.. .+...+..+.+.+.|...++
T Consensus 8 ~~~~~~~~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~v~~~~~d~~~~~ 85 (284)
T 3gu3_A 8 DYVSFLVNTVW-KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARE-LFRLLPYDSEFLEGDATEIE 85 (284)
T ss_dssp HHHHHHHHTTS-CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHH-HHHSSSSEEEEEESCTTTCC
T ss_pred HHHHHHHHHHh-ccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHhcCCceEEEEcchhhcC
Confidence 44444554442 1223569999999999999999875 57888887754443322 22233446778888888888
Q ss_pred CCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 006905 271 YPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPP 315 (626)
Q Consensus 271 f~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~pp 315 (626)
++ ++||+|++..+++|+. +...++.++.|+|||||++++..+.
T Consensus 86 ~~-~~fD~v~~~~~l~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 86 LN-DKYDIAICHAFLLHMT-TPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp CS-SCEEEEEEESCGGGCS-SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cC-CCeeEEEECChhhcCC-CHHHHHHHHHHHcCCCCEEEEEecc
Confidence 84 6999999999997665 4689999999999999999998775
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.8e-11 Score=125.53 Aligned_cols=118 Identities=17% Similarity=0.200 Sum_probs=82.3
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHH-------cCCCeEEEEccc
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALE-------RGVPALIGVLAA 266 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~e-------rg~~~~~~v~d~ 266 (626)
.++.+.+.+.....+..+|||||||+|.++..+++. .++++|+++.++..+..+.... ....+.+.++|.
T Consensus 20 l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~ 99 (313)
T 3bgv_A 20 LIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADS 99 (313)
T ss_dssp HHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCT
T ss_pred HHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecc
Confidence 334444444333223568999999999999988864 6888998876665544433322 112467788887
Q ss_pred ccCC----CC--CCCeeEEEecccccccccc---HHHHHHHHHhcccCCeEEEEEeC
Q 006905 267 ERLP----YP--SRAFDMAHCSRCLIPWNQF---GGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 267 ~~Lp----f~--d~sFDlV~~~~~l~h~~~~---~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
..++ ++ +++||+|+|+.++++...+ ...+|.++.|+|||||+|+++.+
T Consensus 100 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 156 (313)
T 3bgv_A 100 SKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP 156 (313)
T ss_dssp TTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 7775 54 4589999999988443132 36899999999999999999865
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.5e-11 Score=125.11 Aligned_cols=110 Identities=15% Similarity=0.141 Sum_probs=81.1
Q ss_pred HHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEcccccCCCCC
Q 006905 199 DDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAERLPYPS 273 (626)
Q Consensus 199 ~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~Lpf~d 273 (626)
+.+.+.+... ++.+|||||||+|.++..|+++ .++++|+++.++..+.. .+...+++ +.+...|...+ +
T Consensus 62 ~~~~~~~~~~--~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~---~ 135 (302)
T 3hem_A 62 KLALDKLNLE--PGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKA-MFDEVDSPRRKEVRIQGWEEF---D 135 (302)
T ss_dssp HHHHHTTCCC--TTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHH-HHHHSCCSSCEEEEECCGGGC---C
T ss_pred HHHHHHcCCC--CcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHH-HHHhcCCCCceEEEECCHHHc---C
Confidence 3444444333 3559999999999999999886 57888887755543332 23344543 66777787665 6
Q ss_pred CCeeEEEecccccccccc--------HHHHHHHHHhcccCCeEEEEEeC
Q 006905 274 RAFDMAHCSRCLIPWNQF--------GGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 274 ~sFDlV~~~~~l~h~~~~--------~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++||+|++..+++|+.+. ...++.++.|+|||||.+++...
T Consensus 136 ~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 184 (302)
T 3hem_A 136 EPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI 184 (302)
T ss_dssp CCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred CCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 899999999999887542 26899999999999999999754
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.25 E-value=4e-11 Score=122.42 Aligned_cols=100 Identities=11% Similarity=0.139 Sum_probs=80.2
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWN 289 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~ 289 (626)
+.+|||+|||+|.++..|+++ .++++|+++..+..+.. .+...+..+.+...|...+++ +++||+|+++.+++|+.
T Consensus 121 ~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~~~ 198 (286)
T 3m70_A 121 PCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNE-TKEKENLNISTALYDINAANI-QENYDFIVSTVVFMFLN 198 (286)
T ss_dssp SCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHTTCCEEEEECCGGGCCC-CSCEEEEEECSSGGGSC
T ss_pred CCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHH-HHHHcCCceEEEEeccccccc-cCCccEEEEccchhhCC
Confidence 458999999999999999987 57888887755544333 333456678888889888887 78999999999997775
Q ss_pred cc-HHHHHHHHHhcccCCeEEEEEe
Q 006905 290 QF-GGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 290 ~~-~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
.. ...++.++.++|||||++++..
T Consensus 199 ~~~~~~~l~~~~~~LkpgG~l~i~~ 223 (286)
T 3m70_A 199 RERVPSIIKNMKEHTNVGGYNLIVA 223 (286)
T ss_dssp GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 43 3689999999999999988864
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.24 E-value=9.9e-12 Score=116.62 Aligned_cols=94 Identities=17% Similarity=0.197 Sum_probs=76.8
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWN 289 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~ 289 (626)
+.+|||+|||+|.++..+++. .++++|+++ .+++.++++...+.+...| +++++++||+|+++.+++|+.
T Consensus 18 ~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~-----~~~~~a~~~~~~v~~~~~d---~~~~~~~~D~v~~~~~l~~~~ 89 (170)
T 3i9f_A 18 KGVIVDYGCGNGFYCKYLLEFATKLYCIDINV-----IALKEVKEKFDSVITLSDP---KEIPDNSVDFILFANSFHDMD 89 (170)
T ss_dssp CEEEEEETCTTCTTHHHHHTTEEEEEEECSCH-----HHHHHHHHHCTTSEEESSG---GGSCTTCEEEEEEESCSTTCS
T ss_pred CCeEEEECCCCCHHHHHHHhhcCeEEEEeCCH-----HHHHHHHHhCCCcEEEeCC---CCCCCCceEEEEEccchhccc
Confidence 458999999999999999987 567776654 5566666655556776655 778889999999999997775
Q ss_pred ccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 290 QFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 290 ~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+...+++++.|+|||||++++...
T Consensus 90 -~~~~~l~~~~~~L~pgG~l~~~~~ 113 (170)
T 3i9f_A 90 -DKQHVISEVKRILKDDGRVIIIDW 113 (170)
T ss_dssp -CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -CHHHHHHHHHHhcCCCCEEEEEEc
Confidence 568999999999999999999864
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.4e-11 Score=119.06 Aligned_cols=100 Identities=25% Similarity=0.332 Sum_probs=78.8
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHc----CC------CeEEEEcccccCCCCCCCeeEE
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALER----GV------PALIGVLAAERLPYPSRAFDMA 279 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~er----g~------~~~~~v~d~~~Lpf~d~sFDlV 279 (626)
+.+|||+|||+|.++..++++ .++++|+++ .+++.++++ +. .+.+...+...+++++++||+|
T Consensus 31 ~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 105 (235)
T 3sm3_A 31 DDEILDIGCGSGKISLELASKGYSVTGIDINS-----EAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFA 105 (235)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEE
T ss_pred CCeEEEECCCCCHHHHHHHhCCCeEEEEECCH-----HHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEE
Confidence 458999999999999999987 566777755 444455442 33 3567788888899989999999
Q ss_pred EeccccccccccH--HHHHHHHHhcccCCeEEEEEeCCC
Q 006905 280 HCSRCLIPWNQFG--GIYLIEVDRVLRPGGYWILSGPPI 316 (626)
Q Consensus 280 ~~~~~l~h~~~~~--~~~L~Ei~RvLKPGG~lvis~pp~ 316 (626)
+++.+++|+.+.. ..+++++.|+|||||++++..+..
T Consensus 106 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (235)
T 3sm3_A 106 VMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQ 144 (235)
T ss_dssp EEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred EEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCc
Confidence 9999997776432 289999999999999999986533
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.4e-11 Score=117.46 Aligned_cols=97 Identities=18% Similarity=0.226 Sum_probs=77.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEccccc--CCCCCCCeeEEEeccccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAER--LPYPSRAFDMAHCSRCLI 286 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~--Lpf~d~sFDlV~~~~~l~ 286 (626)
+..+|||+|||+|.++..+++. .++++|+ ++.+++.++++.. .+...|... +++++++||+|+++.+++
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~-----~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~v~~~~~l~ 104 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIKENGTRVSGIEA-----FPEAAEQAKEKLD--HVVLGDIETMDMPYEEEQFDCVIFGDVLE 104 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHHTTTCEEEEEES-----SHHHHHHHHTTSS--EEEESCTTTCCCCSCTTCEEEEEEESCGG
T ss_pred CCCcEEEeCCCCCHHHHHHHhcCCeEEEEeC-----CHHHHHHHHHhCC--cEEEcchhhcCCCCCCCccCEEEECChhh
Confidence 4569999999999999999887 4556665 4456667766543 455667655 678889999999999997
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeCC
Q 006905 287 PWNQFGGIYLIEVDRVLRPGGYWILSGPP 315 (626)
Q Consensus 287 h~~~~~~~~L~Ei~RvLKPGG~lvis~pp 315 (626)
|+.+ +..++.++.++|+|||++++..+.
T Consensus 105 ~~~~-~~~~l~~~~~~L~~gG~l~~~~~~ 132 (230)
T 3cc8_A 105 HLFD-PWAVIEKVKPYIKQNGVILASIPN 132 (230)
T ss_dssp GSSC-HHHHHHHTGGGEEEEEEEEEEEEC
T ss_pred hcCC-HHHHHHHHHHHcCCCCEEEEEeCC
Confidence 7764 589999999999999999998754
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.23 E-value=5.6e-11 Score=122.93 Aligned_cols=101 Identities=16% Similarity=0.108 Sum_probs=77.7
Q ss_pred CCCEEEEeCCCCchHHHHHh--hC---CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEcccccCCCCCCCeeEEEecc
Q 006905 211 SIRTAIDTGCGVASWGAYLL--SR---NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAERLPYPSRAFDMAHCSR 283 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La--~~---~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~Lpf~d~sFDlV~~~~ 283 (626)
++.+|||||||+|.++..|+ .. .++++|+++..+..+.. .+...+.. +.+..+|...++++ ++||+|+++.
T Consensus 118 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~ 195 (305)
T 3ocj_A 118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATR-LAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSNG 195 (305)
T ss_dssp TTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHH-HHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECCS
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHH-HHHhcCCCCceEEEECchhcCCcc-CCeEEEEECC
Confidence 35689999999999999985 22 68888887754443322 22233433 77888899899987 8999999999
Q ss_pred ccccccccHH--HHHHHHHhcccCCeEEEEEe
Q 006905 284 CLIPWNQFGG--IYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 284 ~l~h~~~~~~--~~L~Ei~RvLKPGG~lvis~ 313 (626)
+++|+.+... .++.++.|+|||||+|++..
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 227 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKPGGALVTSF 227 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 9977765432 48999999999999999986
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.23 E-value=2.9e-11 Score=118.74 Aligned_cols=94 Identities=22% Similarity=0.265 Sum_probs=78.4
Q ss_pred CCEEEEeCCCCchHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSRNIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQF 291 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~~ 291 (626)
+.+|||||||+|.++..++.+ +++|+++ .+++.++++ .+.+...+...+++++++||+|++..+++|+. +
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~--~~vD~s~-----~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~-~ 117 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK--IGVEPSE-----RMAEIARKR--GVFVLKGTAENLPLKDESFDFALMVTTICFVD-D 117 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC--EEEESCH-----HHHHHHHHT--TCEEEECBTTBCCSCTTCEEEEEEESCGGGSS-C
T ss_pred CCcEEEeCCCCCHHHHHHHHH--hccCCCH-----HHHHHHHhc--CCEEEEcccccCCCCCCCeeEEEEcchHhhcc-C
Confidence 458999999999999999887 7787755 455666666 45677778888898889999999999997764 5
Q ss_pred HHHHHHHHHhcccCCeEEEEEeCC
Q 006905 292 GGIYLIEVDRVLRPGGYWILSGPP 315 (626)
Q Consensus 292 ~~~~L~Ei~RvLKPGG~lvis~pp 315 (626)
+..+|.++.++|+|||.+++..+.
T Consensus 118 ~~~~l~~~~~~L~pgG~l~i~~~~ 141 (219)
T 1vlm_A 118 PERALKEAYRILKKGGYLIVGIVD 141 (219)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHcCCCcEEEEEEeC
Confidence 689999999999999999998653
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.23 E-value=8.8e-12 Score=126.52 Aligned_cols=114 Identities=16% Similarity=0.097 Sum_probs=77.8
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHc-C-------------------
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALER-G------------------- 256 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~er-g------------------- 256 (626)
.+.+++.....++.+|||||||+|.++..++.. .|+++|+++.++..+......+. +
T Consensus 44 ~~~~~~~~~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~ 123 (263)
T 2a14_A 44 CLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGR 123 (263)
T ss_dssp HHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGG
T ss_pred HHHHHhcCCCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcc
Confidence 444554333334568999999999887766654 48899998876665433211100 0
Q ss_pred ---------CCeE-EEEccccc-CCCC---CCCeeEEEecccccccc---ccHHHHHHHHHhcccCCeEEEEEe
Q 006905 257 ---------VPAL-IGVLAAER-LPYP---SRAFDMAHCSRCLIPWN---QFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 257 ---------~~~~-~~v~d~~~-Lpf~---d~sFDlV~~~~~l~h~~---~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
..+. +.++|... .|++ .++||+|+++.+++|.. ++...+++++.|+|||||+|++++
T Consensus 124 ~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~ 197 (263)
T 2a14_A 124 WEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV 197 (263)
T ss_dssp HHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhhHHHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 0122 56677555 3443 67899999999997653 233689999999999999999986
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.2e-11 Score=117.74 Aligned_cols=98 Identities=22% Similarity=0.261 Sum_probs=77.4
Q ss_pred CCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcC---CCeEEEEcccccCCCCCCCeeEEEecccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERG---VPALIGVLAAERLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg---~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l 285 (626)
..+|||+|||+|.++..+++. .++++|+++.. ++.++++. ..+.+.+.|...+++++++||+|+++.++
T Consensus 43 ~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~-----~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~ 117 (215)
T 2pxx_A 43 EDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVV-----VAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTL 117 (215)
T ss_dssp TCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHH-----HHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHH
T ss_pred CCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHH-----HHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcch
Confidence 458999999999999999886 57888886644 44444332 34677788888889888999999998877
Q ss_pred cccc--------------ccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 286 IPWN--------------QFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 286 ~h~~--------------~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++.. .+...++.++.|+|||||.+++..+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 160 (215)
T 2pxx_A 118 DALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS 160 (215)
T ss_dssp HHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred hhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence 5543 2337899999999999999999865
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.4e-11 Score=118.68 Aligned_cols=97 Identities=13% Similarity=0.153 Sum_probs=76.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecc-cccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSR-CLIP 287 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~-~l~h 287 (626)
+..+|||+|||+|.++..|+++ .++++|+++ .+++.++++...+.+...|...+++ +++||+|+|.. +++|
T Consensus 40 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~-----~~~~~a~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~ 113 (239)
T 3bxo_A 40 EASSLLDVACGTGTHLEHFTKEFGDTAGLELSE-----DMLTHARKRLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGY 113 (239)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHHSEEEEEESCH-----HHHHHHHHHCTTCEEEECCTTTCCC-SSCEEEEEECTTGGGG
T ss_pred CCCeEEEecccCCHHHHHHHHhCCcEEEEeCCH-----HHHHHHHHhCCCCEEEECCHHHccc-CCCCcEEEEcCchHhh
Confidence 3568999999999999999886 477777755 4555666665557788888888887 67899999755 7766
Q ss_pred cc--ccHHHHHHHHHhcccCCeEEEEEe
Q 006905 288 WN--QFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 288 ~~--~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
.. .+...+|+++.++|||||.+++..
T Consensus 114 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (239)
T 3bxo_A 114 LKTTEELGAAVASFAEHLEPGGVVVVEP 141 (239)
T ss_dssp CCSHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred cCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 64 334789999999999999999974
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.8e-11 Score=117.83 Aligned_cols=105 Identities=19% Similarity=0.183 Sum_probs=77.4
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccC---CCCC-
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSRN--IITMSFAPRDTHEAQVQFALERGVPALIGVLAAERL---PYPS- 273 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~~--V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~L---pf~d- 273 (626)
.+.+.+.... +.+|||||||+|.++..|++.+ ++++|++ +.+++.++++ ....+...+...+ ++..
T Consensus 43 ~~~~~~~~~~--~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s-----~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~ 114 (227)
T 3e8s_A 43 AILLAILGRQ--PERVLDLGCGEGWLLRALADRGIEAVGVDGD-----RTLVDAARAA-GAGEVHLASYAQLAEAKVPVG 114 (227)
T ss_dssp HHHHHHHHTC--CSEEEEETCTTCHHHHHHHTTTCEEEEEESC-----HHHHHHHHHT-CSSCEEECCHHHHHTTCSCCC
T ss_pred HHHHHhhcCC--CCEEEEeCCCCCHHHHHHHHCCCEEEEEcCC-----HHHHHHHHHh-cccccchhhHHhhcccccccC
Confidence 3444443333 3689999999999999999874 5666664 4566677766 3344555565544 5444
Q ss_pred CCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 274 RAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 274 ~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++||+|+|+.+++ ..+...+++++.++|||||++++..+
T Consensus 115 ~~fD~v~~~~~l~--~~~~~~~l~~~~~~L~pgG~l~~~~~ 153 (227)
T 3e8s_A 115 KDYDLICANFALL--HQDIIELLSAMRTLLVPGGALVIQTL 153 (227)
T ss_dssp CCEEEEEEESCCC--SSCCHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCccEEEECchhh--hhhHHHHHHHHHHHhCCCeEEEEEec
Confidence 4599999999995 55568999999999999999999875
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.3e-11 Score=126.72 Aligned_cols=102 Identities=5% Similarity=-0.028 Sum_probs=72.8
Q ss_pred CCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCC-------eEEEEccc------ccC--CCCC
Q 006905 212 IRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVP-------ALIGVLAA------ERL--PYPS 273 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~-------~~~~v~d~------~~L--pf~d 273 (626)
+.+|||||||+|..+..++.. .|+++|+++.++..+..+.. +.+.. +.+.+.+. ..+ ++++
T Consensus 49 ~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~-~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 49 KRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYN-KLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp CCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHH-HHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHH-hccccccccccccchhhhhcccchhhhhhhccccC
Confidence 568999999999765555443 58999998877766554433 33322 34555554 323 4667
Q ss_pred CCeeEEEecccccccc--ccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 274 RAFDMAHCSRCLIPWN--QFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 274 ~sFDlV~~~~~l~h~~--~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++||+|+|..++|+.. .+...+|+++.|+|||||+|+++.+
T Consensus 128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 8999999999885432 2347899999999999999999865
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=5e-11 Score=116.25 Aligned_cols=85 Identities=21% Similarity=0.281 Sum_probs=72.5
Q ss_pred CCEEEEeCCCCchHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSRNIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQF 291 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~~ 291 (626)
..+|||||||+|.++..++ ..++++|+++. .+.+..+|...+|+++++||+|+++.++ |+ .+
T Consensus 68 ~~~vLDiG~G~G~~~~~l~-~~v~~~D~s~~---------------~~~~~~~d~~~~~~~~~~fD~v~~~~~l-~~-~~ 129 (215)
T 2zfu_A 68 SLVVADFGCGDCRLASSIR-NPVHCFDLASL---------------DPRVTVCDMAQVPLEDESVDVAVFCLSL-MG-TN 129 (215)
T ss_dssp TSCEEEETCTTCHHHHHCC-SCEEEEESSCS---------------STTEEESCTTSCSCCTTCEEEEEEESCC-CS-SC
T ss_pred CCeEEEECCcCCHHHHHhh-ccEEEEeCCCC---------------CceEEEeccccCCCCCCCEeEEEEehhc-cc-cC
Confidence 4589999999999998885 68999999884 2345667888889989999999999999 44 55
Q ss_pred HHHHHHHHHhcccCCeEEEEEeC
Q 006905 292 GGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 292 ~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
...+|.++.++|+|||++++...
T Consensus 130 ~~~~l~~~~~~L~~gG~l~i~~~ 152 (215)
T 2zfu_A 130 IRDFLEEANRVLKPGGLLKVAEV 152 (215)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHHHHHHhCCCCeEEEEEEc
Confidence 78999999999999999999864
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.22 E-value=4.4e-11 Score=115.36 Aligned_cols=99 Identities=18% Similarity=0.192 Sum_probs=76.4
Q ss_pred EEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccccc-c
Q 006905 214 TAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWN-Q 290 (626)
Q Consensus 214 ~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~-~ 290 (626)
+|||||||+|.++..|++. .++++|+++.++..+... ....+..+.+...|...+++++++||+|+++.. |+. .
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~--~~~~~ 108 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQL-AQEKGVKITTVQSNLADFDIVADAWEGIVSIFC--HLPSS 108 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHH-HHHHTCCEEEECCBTTTBSCCTTTCSEEEEECC--CCCHH
T ss_pred CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHH-HHhcCCceEEEEcChhhcCCCcCCccEEEEEhh--cCCHH
Confidence 8999999999999999987 567777766544433322 223355777888888888888899999999653 443 3
Q ss_pred cHHHHHHHHHhcccCCeEEEEEeCC
Q 006905 291 FGGIYLIEVDRVLRPGGYWILSGPP 315 (626)
Q Consensus 291 ~~~~~L~Ei~RvLKPGG~lvis~pp 315 (626)
+...++.++.++|||||++++..+.
T Consensus 109 ~~~~~l~~~~~~L~pgG~l~~~~~~ 133 (202)
T 2kw5_A 109 LRQQLYPKVYQGLKPGGVFILEGFA 133 (202)
T ss_dssp HHHHHHHHHHTTCCSSEEEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEec
Confidence 4478999999999999999998753
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.4e-11 Score=123.43 Aligned_cols=113 Identities=13% Similarity=0.066 Sum_probs=78.0
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEccccc--C
Q 006905 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAER--L 269 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~--L 269 (626)
..+.+.+.+.+. ..+.+|||||||+|..+.++++. .++++|+++.++..+ .+.+...+....+..++.+. .
T Consensus 47 ~~~m~~~a~~~~---~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a-~~~~~~~~~~~~~~~~~a~~~~~ 122 (236)
T 3orh_A 47 TPYMHALAAAAS---SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRL-RDWAPRQTHKVIPLKGLWEDVAP 122 (236)
T ss_dssp HHHHHHHHHHHT---TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHH-HHHGGGCSSEEEEEESCHHHHGG
T ss_pred HHHHHHHHHhhc---cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHH-HHHHhhCCCceEEEeehHHhhcc
Confidence 345555666553 23568999999999999999886 577888876444322 22333345556666666543 3
Q ss_pred CCCCCCeeEEEe-----ccccccccccHHHHHHHHHhcccCCeEEEEE
Q 006905 270 PYPSRAFDMAHC-----SRCLIPWNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 270 pf~d~sFDlV~~-----~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
++++++||.|++ ...+.|.. +...++.++.|+|||||.|++.
T Consensus 123 ~~~~~~FD~i~~D~~~~~~~~~~~~-~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 123 TLPDGHFDGILYDTYPLSEETWHTH-QFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp GSCTTCEEEEEECCCCCBGGGTTTH-HHHHHHHTHHHHEEEEEEEEEC
T ss_pred cccccCCceEEEeeeecccchhhhc-chhhhhhhhhheeCCCCEEEEE
Confidence 578899999985 33333433 3478999999999999999884
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=3.7e-11 Score=124.65 Aligned_cols=100 Identities=11% Similarity=0.140 Sum_probs=76.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCCCCCCCeeEEEecccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lpf~d~sFDlV~~~~~l 285 (626)
++.+|||||||+|.++..+++. .++++|+++.++..+.. .....++ .+.+...|...+| ++||+|++..++
T Consensus 90 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~---~~fD~v~~~~~l 165 (318)
T 2fk8_A 90 PGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQ-VLASIDTNRSRQVLLQGWEDFA---EPVDRIVSIEAF 165 (318)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHH-HHHTSCCSSCEEEEESCGGGCC---CCCSEEEEESCG
T ss_pred CcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHH-HHHhcCCCCceEEEECChHHCC---CCcCEEEEeChH
Confidence 3569999999999999999876 57777776644433322 2223343 3677777877775 789999999999
Q ss_pred cccc-ccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 286 IPWN-QFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 286 ~h~~-~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+|+. .+...+|.++.|+|||||.+++..+
T Consensus 166 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 195 (318)
T 2fk8_A 166 EHFGHENYDDFFKRCFNIMPADGRMTVQSS 195 (318)
T ss_dssp GGTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred HhcCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 8875 3558999999999999999999864
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.21 E-value=2.9e-11 Score=129.62 Aligned_cols=102 Identities=20% Similarity=0.146 Sum_probs=79.5
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHc----C----CCeEEEEcccccC------CCC
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALER----G----VPALIGVLAAERL------PYP 272 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~er----g----~~~~~~v~d~~~L------pf~ 272 (626)
+.+|||||||+|.++..|++. .++++|+++.++..+..+..... | ..+.+..+|...+ +++
T Consensus 84 ~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~~ 163 (383)
T 4fsd_A 84 GATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVP 163 (383)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCCC
T ss_pred CCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCCC
Confidence 568999999999999888774 58888887754443332222110 3 4678888888776 899
Q ss_pred CCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 273 SRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 273 d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+++||+|+++.+++|+. +...+|+++.|+|||||+|+++..
T Consensus 164 ~~~fD~V~~~~~l~~~~-d~~~~l~~~~r~LkpgG~l~i~~~ 204 (383)
T 4fsd_A 164 DSSVDIVISNCVCNLST-NKLALFKEIHRVLRDGGELYFSDV 204 (383)
T ss_dssp TTCEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCEEEEEEccchhcCC-CHHHHHHHHHHHcCCCCEEEEEEe
Confidence 99999999999996654 478999999999999999999753
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.6e-11 Score=120.52 Aligned_cols=114 Identities=13% Similarity=0.091 Sum_probs=79.6
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccC--
Q 006905 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERL-- 269 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~L-- 269 (626)
..+++.+...+. ..+.+|||||||+|.++..|++. .++++|+++.++..+.. .+...+..+.+..+|...+
T Consensus 47 ~~~~~~l~~~~~---~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~-~~~~~~~~v~~~~~d~~~~~~ 122 (236)
T 1zx0_A 47 TPYMHALAAAAS---SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRD-WAPRQTHKVIPLKGLWEDVAP 122 (236)
T ss_dssp HHHHHHHHHHHT---TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHH-HGGGCSSEEEEEESCHHHHGG
T ss_pred HHHHHHHHhhcC---CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHH-HHHhcCCCeEEEecCHHHhhc
Confidence 445555555442 23558999999999999999875 57788886654433222 2222345577778887777
Q ss_pred CCCCCCeeEEEe-ccccccccc----cHHHHHHHHHhcccCCeEEEEEe
Q 006905 270 PYPSRAFDMAHC-SRCLIPWNQ----FGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 270 pf~d~sFDlV~~-~~~l~h~~~----~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
++++++||+|++ .+.+ +... ....++.++.|+|||||+|++..
T Consensus 123 ~~~~~~fD~V~~d~~~~-~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 123 TLPDGHFDGILYDTYPL-SEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp GSCTTCEEEEEECCCCC-BGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ccCCCceEEEEECCccc-chhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 888999999999 5553 2211 12477999999999999999863
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=6.9e-11 Score=127.08 Aligned_cols=119 Identities=13% Similarity=0.111 Sum_probs=87.2
Q ss_pred HHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCC
Q 006905 196 AYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPS 273 (626)
Q Consensus 196 ~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d 273 (626)
..++.+.+.+.....++.+|||+|||+|.++..++++ .|+++|+++..+..+.. .+...++.+.+...|....+.++
T Consensus 218 ~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~-n~~~~~~~v~~~~~D~~~~~~~~ 296 (381)
T 3dmg_A 218 LLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQK-GLEANALKAQALHSDVDEALTEE 296 (381)
T ss_dssp HHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHH-HHHHTTCCCEEEECSTTTTSCTT
T ss_pred HHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHH-HHHHcCCCeEEEEcchhhccccC
Confidence 3444444443212234568999999999999999987 57888887755544333 33345667888888888887777
Q ss_pred CCeeEEEeccccccc----cccHHHHHHHHHhcccCCeEEEEEeCC
Q 006905 274 RAFDMAHCSRCLIPW----NQFGGIYLIEVDRVLRPGGYWILSGPP 315 (626)
Q Consensus 274 ~sFDlV~~~~~l~h~----~~~~~~~L~Ei~RvLKPGG~lvis~pp 315 (626)
++||+|+|+..+++. ......++.++.++|||||.++++..+
T Consensus 297 ~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~ 342 (381)
T 3dmg_A 297 ARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNP 342 (381)
T ss_dssp CCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred CCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcC
Confidence 899999999888541 233478999999999999999998753
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.20 E-value=5.6e-11 Score=112.70 Aligned_cols=98 Identities=17% Similarity=0.201 Sum_probs=77.5
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEec-cccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCS-RCLIPW 288 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~-~~l~h~ 288 (626)
..+|||+|||+|.++..+++. .++++|+++ .+++.++++...+.+...|...+++++++||+|+++ .++++.
T Consensus 47 ~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~-----~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~ 121 (195)
T 3cgg_A 47 GAKILDAGCGQGRIGGYLSKQGHDVLGTDLDP-----ILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFL 121 (195)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGS
T ss_pred CCeEEEECCCCCHHHHHHHHCCCcEEEEcCCH-----HHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhc
Confidence 558999999999999999887 456666644 566666666555778888888888888899999998 566554
Q ss_pred cc-cHHHHHHHHHhcccCCeEEEEEeC
Q 006905 289 NQ-FGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 289 ~~-~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.. +...++.++.++|+|||.+++..+
T Consensus 122 ~~~~~~~~l~~~~~~l~~~G~l~~~~~ 148 (195)
T 3cgg_A 122 AEDGREPALANIHRALGADGRAVIGFG 148 (195)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ChHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 32 237899999999999999999864
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.20 E-value=4.7e-11 Score=115.25 Aligned_cols=134 Identities=13% Similarity=0.084 Sum_probs=103.4
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-cceeccccccCCCCC-CccceeeeccccccCCCC
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-VGTYTNWCEAMSTYP-RTYDLIHADSVFSLYKDR 548 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-i~~~~~~~e~~~~yp-~t~Dlih~~~~f~~~~~~ 548 (626)
.+|||+|||.|.++..|++.+. +|+.+|.++.+++.+.++.- +..+..-.+.+. ++ ++||+|.+..+|.+...
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~~~~- 117 (203)
T 3h2b_A 43 GVILDVGSGTGRWTGHLASLGH---QIEGLEPATRLVELARQTHPSVTFHHGTITDLS-DSPKRWAGLLAWYSLIHMGP- 117 (203)
T ss_dssp SCEEEETCTTCHHHHHHHHTTC---CEEEECCCHHHHHHHHHHCTTSEEECCCGGGGG-GSCCCEEEEEEESSSTTCCT-
T ss_pred CeEEEecCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhCCCCeEEeCcccccc-cCCCCeEEEEehhhHhcCCH-
Confidence 4699999999999999999876 78999999999999998842 233332122232 33 89999999999998763
Q ss_pred CCHHHHHHHhhhhccCCcEEEEEcCh----------------HHHHHHHHHHHhCCCeeEEeecCCCCCCcceEEEEEe
Q 006905 549 CETEDILLEMDRILRPEGGVIFRDDV----------------DELVKVKRIIDALKWQSQIVDHEDGPLEREKLLFAVK 611 (626)
Q Consensus 549 c~~~~~l~E~dRiLRPgG~~i~~d~~----------------~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K 611 (626)
-+...+|.++.|+|||||.+++.+.. -....+++++....|++.......+ .+...|...|
T Consensus 118 ~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~--~p~~~l~~~~ 194 (203)
T 3h2b_A 118 GELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWDPR--FPHAYLTAEA 194 (203)
T ss_dssp TTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECTT--SSEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecCC--Ccchhhhhhh
Confidence 37789999999999999999998522 1368899999999999886665544 4555555554
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=3.8e-11 Score=123.65 Aligned_cols=113 Identities=12% Similarity=0.054 Sum_probs=82.6
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcC----CCeEEEEcccccCC
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERG----VPALIGVLAAERLP 270 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg----~~~~~~v~d~~~Lp 270 (626)
....+.+.+... ..+|||||||+|.++..|+++ .++++|+++.++..+..+ +...+ ..+.+.++|...++
T Consensus 71 ~~~~~~~~~~~~---~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~v~~~~~d~~~~~ 146 (299)
T 3g2m_A 71 EAREFATRTGPV---SGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKR-LAEAPADVRDRCTLVQGDMSAFA 146 (299)
T ss_dssp HHHHHHHHHCCC---CSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHH-HHTSCHHHHTTEEEEECBTTBCC
T ss_pred HHHHHHHhhCCC---CCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHH-HhhcccccccceEEEeCchhcCC
Confidence 344455555322 237999999999999999987 688888877555433322 22223 45788889988888
Q ss_pred CCCCCeeEEEecccccccccc--HHHHHHHHHhcccCCeEEEEEeC
Q 006905 271 YPSRAFDMAHCSRCLIPWNQF--GGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 271 f~d~sFDlV~~~~~l~h~~~~--~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+ +++||+|+|...+.|+.+. ...+|+++.|+|||||+|++..+
T Consensus 147 ~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 191 (299)
T 3g2m_A 147 L-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLA 191 (299)
T ss_dssp C-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred c-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEee
Confidence 7 6899999986554455542 37899999999999999999864
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.19 E-value=1.3e-10 Score=116.00 Aligned_cols=114 Identities=18% Similarity=0.236 Sum_probs=81.7
Q ss_pred HHHHHhhcc-CCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCC
Q 006905 199 DDIGKLINL-NDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRA 275 (626)
Q Consensus 199 ~~L~~ll~l-~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~s 275 (626)
+.+.+++.. ...++.+|||+|||+|.++..|+++ .++++|+++.++..+..+ +...+..+.+..+|...++++ ++
T Consensus 28 ~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~-~~~~~~~v~~~~~d~~~~~~~-~~ 105 (252)
T 1wzn_A 28 DFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRK-AKERNLKIEFLQGDVLEIAFK-NE 105 (252)
T ss_dssp HHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHTTCCCEEEESCGGGCCCC-SC
T ss_pred HHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHH-HHhcCCceEEEECChhhcccC-CC
Confidence 334444442 2233568999999999999999887 577888877555543332 334456778888888888865 68
Q ss_pred eeEEEecccccccc--ccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 276 FDMAHCSRCLIPWN--QFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 276 FDlV~~~~~l~h~~--~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
||+|+|..+.+++. .+...+|.++.++|||||.+++..+
T Consensus 106 fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 146 (252)
T 1wzn_A 106 FDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (252)
T ss_dssp EEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 99999875443332 2347899999999999999998754
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.1e-11 Score=117.79 Aligned_cols=132 Identities=15% Similarity=0.214 Sum_probs=98.2
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc--cceeccccccCCCCC--CccceeeeccccccC
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL--VGTYTNWCEAMSTYP--RTYDLIHADSVFSLY 545 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl--i~~~~~~~e~~~~yp--~t~Dlih~~~~f~~~ 545 (626)
-.+|||+|||.|.++..|++.+. +|+.+|.++.+++.+.++.- +..+. ..+..+| .+||+|.+..+|.+.
T Consensus 46 ~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~---~d~~~~~~~~~fD~v~~~~~l~~~ 119 (220)
T 3hnr_A 46 FGNVLEFGVGTGNLTNKLLLAGR---TVYGIEPSREMRMIAKEKLPKEFSITE---GDFLSFEVPTSIDTIVSTYAFHHL 119 (220)
T ss_dssp CSEEEEECCTTSHHHHHHHHTTC---EEEEECSCHHHHHHHHHHSCTTCCEES---CCSSSCCCCSCCSEEEEESCGGGS
T ss_pred CCeEEEeCCCCCHHHHHHHhCCC---eEEEEeCCHHHHHHHHHhCCCceEEEe---CChhhcCCCCCeEEEEECcchhcC
Confidence 56899999999999999999875 89999999999999988843 33333 3333333 899999999999988
Q ss_pred CCCCCHHHHHHHhhhhccCCcEEEEEcCh----H---------------------------HHHHHHHHHHhCCCeeEEe
Q 006905 546 KDRCETEDILLEMDRILRPEGGVIFRDDV----D---------------------------ELVKVKRIIDALKWQSQIV 594 (626)
Q Consensus 546 ~~~c~~~~~l~E~dRiLRPgG~~i~~d~~----~---------------------------~~~~~~~~~~~l~w~~~~~ 594 (626)
.+. ....+|.|+.|+|||||.+++.+.. . ....++++++.-.+++...
T Consensus 120 ~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~ 198 (220)
T 3hnr_A 120 TDD-EKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFT 198 (220)
T ss_dssp CHH-HHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEEE
T ss_pred ChH-HHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEEe
Confidence 743 1233999999999999999998531 1 1366778888888876654
Q ss_pred ecCCCCCCcceEEEEEec
Q 006905 595 DHEDGPLEREKLLFAVKL 612 (626)
Q Consensus 595 ~~e~~~~~~e~~l~~~K~ 612 (626)
... .-.-++.++|+
T Consensus 199 ~~~----~~~w~~~~~~~ 212 (220)
T 3hnr_A 199 RLN----HFVWVMEATKQ 212 (220)
T ss_dssp ECS----SSEEEEEEEEC
T ss_pred ecc----ceEEEEeehhh
Confidence 433 23446666654
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-11 Score=127.13 Aligned_cols=103 Identities=17% Similarity=0.156 Sum_probs=73.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcC------------------------------
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERG------------------------------ 256 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg------------------------------ 256 (626)
.+.+|||||||+|.++..|+++ .++++|+++.++..+...... .+
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRH-YLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHh-hhhhhccccccccccccccccccccccccccc
Confidence 3569999999999999998886 678888876544433322111 00
Q ss_pred -----------------------------CCeEEEEcccccCC-----CCCCCeeEEEecccccccc---c--cHHHHHH
Q 006905 257 -----------------------------VPALIGVLAAERLP-----YPSRAFDMAHCSRCLIPWN---Q--FGGIYLI 297 (626)
Q Consensus 257 -----------------------------~~~~~~v~d~~~Lp-----f~d~sFDlV~~~~~l~h~~---~--~~~~~L~ 297 (626)
..+.+..+|....+ +.+++||+|+|..++++++ . ....+|+
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 13666666654433 5678999999999884443 1 3378999
Q ss_pred HHHhcccCCeEEEEEeC
Q 006905 298 EVDRVLRPGGYWILSGP 314 (626)
Q Consensus 298 Ei~RvLKPGG~lvis~p 314 (626)
++.++|||||+|++...
T Consensus 205 ~~~~~LkpGG~lil~~~ 221 (292)
T 3g07_A 205 RIYRHLRPGGILVLEPQ 221 (292)
T ss_dssp HHHHHEEEEEEEEEECC
T ss_pred HHHHHhCCCcEEEEecC
Confidence 99999999999999854
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.17 E-value=8.8e-11 Score=113.81 Aligned_cols=118 Identities=15% Similarity=0.040 Sum_probs=80.9
Q ss_pred CCCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEc
Q 006905 189 MFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVP-ALIGVL 264 (626)
Q Consensus 189 ~F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~-~~~~v~ 264 (626)
.|..+.......+.+.+.....++.+|||+|||+|.++..|++. .++++|+++.++..+.. .+...+.. +.+...
T Consensus 38 ~f~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~v~~~~~ 116 (205)
T 3grz_A 38 AFGTGNHQTTQLAMLGIERAMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEE-NAALNGIYDIALQKT 116 (205)
T ss_dssp ----CCHHHHHHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHH-HHHHTTCCCCEEEES
T ss_pred ccCCCCCccHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCceEEEec
Confidence 34455555555555555422223568999999999999998886 57888887755544333 23334554 677776
Q ss_pred ccccCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 265 AAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 265 d~~~Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
|... +.+++||+|+++..+++ ...++.++.++|||||+++++.
T Consensus 117 d~~~--~~~~~fD~i~~~~~~~~----~~~~l~~~~~~L~~gG~l~~~~ 159 (205)
T 3grz_A 117 SLLA--DVDGKFDLIVANILAEI----LLDLIPQLDSHLNEDGQVIFSG 159 (205)
T ss_dssp STTT--TCCSCEEEEEEESCHHH----HHHHGGGSGGGEEEEEEEEEEE
T ss_pred cccc--cCCCCceEEEECCcHHH----HHHHHHHHHHhcCCCCEEEEEe
Confidence 7644 34689999999887633 3678999999999999999974
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=8.4e-11 Score=118.39 Aligned_cols=134 Identities=14% Similarity=0.099 Sum_probs=104.2
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-cceeccccccCCCC--CCccceeeecc-ccccC
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-VGTYTNWCEAMSTY--PRTYDLIHADS-VFSLY 545 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-i~~~~~~~e~~~~y--p~t~Dlih~~~-~f~~~ 545 (626)
-.+|||+|||.|.++..|++.+. +|+.+|.++.+++.+.++.- +..+. ..+..+ +.+||+|.|.. +|.+.
T Consensus 51 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~---~d~~~~~~~~~fD~v~~~~~~l~~~ 124 (263)
T 3pfg_A 51 AASLLDVACGTGMHLRHLADSFG---TVEGLELSADMLAIARRRNPDAVLHH---GDMRDFSLGRRFSAVTCMFSSIGHL 124 (263)
T ss_dssp CCEEEEETCTTSHHHHHHTTTSS---EEEEEESCHHHHHHHHHHCTTSEEEE---CCTTTCCCSCCEEEEEECTTGGGGS
T ss_pred CCcEEEeCCcCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCEEEE---CChHHCCccCCcCEEEEcCchhhhc
Confidence 46799999999999999999875 78999999999999998843 23333 233333 59999999998 99988
Q ss_pred CCCCCHHHHHHHhhhhccCCcEEEEEcC----------------------------------------------------
Q 006905 546 KDRCETEDILLEMDRILRPEGGVIFRDD---------------------------------------------------- 573 (626)
Q Consensus 546 ~~~c~~~~~l~E~dRiLRPgG~~i~~d~---------------------------------------------------- 573 (626)
.+.-++..+|.++.|+|||||.++|.+-
T Consensus 125 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (263)
T 3pfg_A 125 AGQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGIT 204 (263)
T ss_dssp CHHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEE
Confidence 6544667899999999999999999520
Q ss_pred ---------hHHHHHHHHHHHhCCCeeEEeecCCCCCCcceEEEEEec
Q 006905 574 ---------VDELVKVKRIIDALKWQSQIVDHEDGPLEREKLLFAVKL 612 (626)
Q Consensus 574 ---------~~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K~ 612 (626)
.-....++++++.--+++..+... .....+.+++|+
T Consensus 205 ~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~---~~~~~~~va~K~ 249 (263)
T 3pfg_A 205 HHEESHRITLFTREQYERAFTAAGLSVEFMPGG---PSGRGLFTGLPG 249 (263)
T ss_dssp EEEEEEEEECCCHHHHHHHHHHTTEEEEEESST---TTSSCEEEEEEC
T ss_pred EEEEEEEEEeecHHHHHHHHHHCCCEEEEeeCC---CCCceeEEEecC
Confidence 002688999999999987755332 234678999996
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=3.8e-11 Score=114.83 Aligned_cols=119 Identities=15% Similarity=0.188 Sum_probs=88.7
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceeccccccCCCCCCccceeeeccccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYTNWCEAMSTYPRTYDLIHADSVFS 543 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~~~~e~~~~yp~t~Dlih~~~~f~ 543 (626)
-.+|||+|||.|.++..|++.+. +|+.+|.++.+++.+.++ |+ +...+.-.+.+.. +.+||+|.+..+|.
T Consensus 33 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~l~ 108 (199)
T 2xvm_A 33 PGKTLDLGCGNGRNSLYLAANGY---DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYDFILSTVVLM 108 (199)
T ss_dssp SCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEEEEEEESCGG
T ss_pred CCeEEEEcCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCceEEEEcchhh
Confidence 35899999999999999998875 899999998999887764 32 2333311122222 68999999999998
Q ss_pred cCCCCCCHHHHHHHhhhhccCCcEEEEEcCh--------------HHHHHHHHHHHhCCCeeEEee
Q 006905 544 LYKDRCETEDILLEMDRILRPEGGVIFRDDV--------------DELVKVKRIIDALKWQSQIVD 595 (626)
Q Consensus 544 ~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~--------------~~~~~~~~~~~~l~w~~~~~~ 595 (626)
+... -+...+|.++.|+|||||++++.+.. -....++++++. |++....
T Consensus 109 ~~~~-~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~~ 171 (199)
T 2xvm_A 109 FLEA-KTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVKYN 171 (199)
T ss_dssp GSCG-GGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEEE
T ss_pred hCCH-HHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEEec
Confidence 8753 36688999999999999998875421 134567777776 8876543
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=6.2e-11 Score=120.76 Aligned_cols=103 Identities=19% Similarity=0.231 Sum_probs=78.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCCC-CCCCeeEEEeccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLPY-PSRAFDMAHCSRC 284 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lpf-~d~sFDlV~~~~~ 284 (626)
++.+|||||||+|.++..+++. .++++|+++.++..+..+ ....+. .+.+..+|...+++ ++++||+|+|..+
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 142 (298)
T 1ri5_A 64 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVR-ARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS 142 (298)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHH-HHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred CCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHhcCCCccEEEEECCccccccCCCCCcCEEEECch
Confidence 3568999999999988888775 578888877555433322 222333 36777888888888 6889999999999
Q ss_pred cccc---cccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 285 LIPW---NQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 285 l~h~---~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++|. ..+...+|.++.|+|||||++++..+
T Consensus 143 l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 175 (298)
T 1ri5_A 143 FHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 175 (298)
T ss_dssp GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 8552 23347899999999999999999864
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.2e-10 Score=115.07 Aligned_cols=113 Identities=16% Similarity=0.145 Sum_probs=83.6
Q ss_pred HHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCC
Q 006905 196 AYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSR 274 (626)
Q Consensus 196 ~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~ 274 (626)
.+.+.+.+.++ . ..+|||+|||+|.++..+++. .++++|+++.++..+..+ +...+..+.+...|...++++ +
T Consensus 22 ~~~~~~~~~~~--~--~~~vLdiG~G~G~~~~~l~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~d~~~~~~~-~ 95 (243)
T 3d2l_A 22 EWVAWVLEQVE--P--GKRIADIGCGTGTATLLLADHYEVTGVDLSEEMLEIAQEK-AMETNRHVDFWVQDMRELELP-E 95 (243)
T ss_dssp HHHHHHHHHSC--T--TCEEEEESCTTCHHHHHHTTTSEEEEEESCHHHHHHHHHH-HHHTTCCCEEEECCGGGCCCS-S
T ss_pred HHHHHHHHHcC--C--CCeEEEecCCCCHHHHHHhhCCeEEEEECCHHHHHHHHHh-hhhcCCceEEEEcChhhcCCC-C
Confidence 34444554442 2 358999999999999999886 678888877555543332 223445677888888888876 7
Q ss_pred CeeEEEecc-cccccc--ccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 275 AFDMAHCSR-CLIPWN--QFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 275 sFDlV~~~~-~l~h~~--~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+||+|++.. +++|+. .+...+++++.++|||||.+++..+
T Consensus 96 ~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 138 (243)
T 3d2l_A 96 PVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVH 138 (243)
T ss_dssp CEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 899999986 786663 2347899999999999999999754
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.3e-10 Score=118.70 Aligned_cols=109 Identities=12% Similarity=-0.026 Sum_probs=76.0
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCC---
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPY--- 271 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf--- 271 (626)
.++.+.+.+...+ +.+|||||||+|.++..|+++ .|+++|+++ .+++.++++.... ....+...++.
T Consensus 33 ~~~~il~~l~l~~--g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~-----~ml~~Ar~~~~~~-~v~~~~~~~~~~~~ 104 (261)
T 3iv6_A 33 DRENDIFLENIVP--GSTVAVIGASTRFLIEKALERGASVTVFDFSQ-----RMCDDLAEALADR-CVTIDLLDITAEIP 104 (261)
T ss_dssp HHHHHHHTTTCCT--TCEEEEECTTCHHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHTSSS-CCEEEECCTTSCCC
T ss_pred HHHHHHHhcCCCC--cCEEEEEeCcchHHHHHHHhcCCEEEEEECCH-----HHHHHHHHHHHhc-cceeeeeecccccc
Confidence 3444555554443 459999999999999999987 567777655 4555555543221 12223333332
Q ss_pred --CCCCeeEEEecccccccccc-HHHHHHHHHhcccCCeEEEEEeC
Q 006905 272 --PSRAFDMAHCSRCLIPWNQF-GGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 272 --~d~sFDlV~~~~~l~h~~~~-~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.+++||+|+++.+++|+... ...++.++.++| |||.++++.+
T Consensus 105 ~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 105 KELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp GGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred cccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence 25789999999999887643 367999999999 9999999864
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.15 E-value=5e-11 Score=122.11 Aligned_cols=116 Identities=20% Similarity=0.212 Sum_probs=76.5
Q ss_pred HHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhh---CCcEEEeCCccchHHHHHHHHH----------------HcCC-
Q 006905 198 IDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLS---RNIITMSFAPRDTHEAQVQFAL----------------ERGV- 257 (626)
Q Consensus 198 i~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~---~~V~avdis~~dls~a~i~~A~----------------erg~- 257 (626)
+..+.+.+......+.+|||||||+|.+...++. ..|+++|+++.++..+...... ..+.
T Consensus 58 ~~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~ 137 (289)
T 2g72_A 58 LRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKG 137 (289)
T ss_dssp HHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSC
T ss_pred HHHHHHHhCCCCCCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcc
Confidence 4455555543323456999999999985544433 2688898877655543321110 0110
Q ss_pred -------------CeEEEEccccc-CCC-----CCCCeeEEEecccccccc---ccHHHHHHHHHhcccCCeEEEEEe
Q 006905 258 -------------PALIGVLAAER-LPY-----PSRAFDMAHCSRCLIPWN---QFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 258 -------------~~~~~v~d~~~-Lpf-----~d~sFDlV~~~~~l~h~~---~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
...+..+|+.. +|+ ++++||+|+|+.++++.. .+...+|+++.|+|||||+|++..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~ 215 (289)
T 2g72_A 138 ECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG 215 (289)
T ss_dssp CCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred cchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 02344557665 664 356799999999996643 345899999999999999999974
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.14 E-value=2.7e-10 Score=111.32 Aligned_cols=138 Identities=7% Similarity=0.102 Sum_probs=100.0
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc-----------ccceeccccccCCCCC---Cccce
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG-----------LVGTYTNWCEAMSTYP---RTYDL 535 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg-----------li~~~~~~~e~~~~yp---~t~Dl 535 (626)
-.+|||+|||.|.++..|++.+ ...+|+.+|.++.+++.+.++- -+.++. ..+...| ++||+
T Consensus 30 ~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~---~d~~~~~~~~~~fD~ 105 (219)
T 3jwg_A 30 AKKVIDLGCGEGNLLSLLLKDK-SFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQ---SSLVYRDKRFSGYDA 105 (219)
T ss_dssp CCEEEEETCTTCHHHHHHHTST-TCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEE---CCSSSCCGGGTTCSE
T ss_pred CCEEEEecCCCCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEe---CcccccccccCCCCE
Confidence 4589999999999999999874 1137899999999999998873 123333 2333333 79999
Q ss_pred eeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcChH----------------------HHHHHH----HHHHhCCC
Q 006905 536 IHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDVD----------------------ELVKVK----RIIDALKW 589 (626)
Q Consensus 536 ih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~~----------------------~~~~~~----~~~~~l~w 589 (626)
|.|..++.+..+. ++..+|.++.|+|||||.+++....+ ....++ .++.+-.+
T Consensus 106 V~~~~~l~~~~~~-~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf 184 (219)
T 3jwg_A 106 ATVIEVIEHLDEN-RLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGY 184 (219)
T ss_dssp EEEESCGGGCCHH-HHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTE
T ss_pred EEEHHHHHhCCHH-HHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCc
Confidence 9999999988532 34689999999999999888764321 123344 77888888
Q ss_pred eeEEeecCC---CCCCcceEEEEEec
Q 006905 590 QSQIVDHED---GPLEREKLLFAVKL 612 (626)
Q Consensus 590 ~~~~~~~e~---~~~~~e~~l~~~K~ 612 (626)
++....--+ .-..+.+|.|++|.
T Consensus 185 ~v~~~~~g~~~~~~g~~~qi~~~~~~ 210 (219)
T 3jwg_A 185 SVRFLQIGEIDDEFGSPTQMGVFTLG 210 (219)
T ss_dssp EEEEEEESCCCTTSCCSEEEEEEEEC
T ss_pred EEEEEecCCccccCCCCeEEEEEecc
Confidence 887653222 22257899999995
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.4e-10 Score=113.55 Aligned_cols=105 Identities=18% Similarity=0.132 Sum_probs=76.7
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHH----HcCC-CeEEEEcccccCCCCCCCeeEEEec
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFAL----ERGV-PALIGVLAAERLPYPSRAFDMAHCS 282 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~----erg~-~~~~~v~d~~~Lpf~d~sFDlV~~~ 282 (626)
+.+|||||||+|.++..|+++ .++++|+++.++.... +.++ ..+. .+.+.++|...+|+++++ |.|+..
T Consensus 28 ~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~-~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~~ 105 (218)
T 3mq2_A 28 DDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKIS-AKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHVL 105 (218)
T ss_dssp SEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHH-HHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEEE
T ss_pred CCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH-HHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEEE
Confidence 458999999999999999886 5899999987776432 2222 2343 577888899999998777 887743
Q ss_pred cccc----cccccHHHHHHHHHhcccCCeEEEEEeCCCCc
Q 006905 283 RCLI----PWNQFGGIYLIEVDRVLRPGGYWILSGPPINW 318 (626)
Q Consensus 283 ~~l~----h~~~~~~~~L~Ei~RvLKPGG~lvis~pp~~w 318 (626)
.+.. |+..++..+|+++.|+|||||.|+++.....|
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 145 (218)
T 3mq2_A 106 MPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAW 145 (218)
T ss_dssp SCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGB
T ss_pred ccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccc
Confidence 3221 12233478999999999999999997543333
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=6.8e-11 Score=120.62 Aligned_cols=99 Identities=8% Similarity=0.160 Sum_probs=78.9
Q ss_pred eeEEeccCchhhHhhhhhCC----CeEEEEeccCccCcccHHHHHHh----cccceeccccccCCCCC-Cccceeeeccc
Q 006905 471 RNILDMNAHLGGFAAALIDF----PVWVMNVVPAEAKINTLGVIYER----GLVGTYTNWCEAMSTYP-RTYDLIHADSV 541 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~----~v~~mnv~~~~~~~~~l~~~~~r----gli~~~~~~~e~~~~yp-~t~Dlih~~~~ 541 (626)
.+|||+|||+|.++.+|++. ++ +|+++|.++.||+.+.++ |+..-+.-.|..+..+| ..||+|.+..+
T Consensus 72 ~~vLDlGcGtG~~~~~la~~~~~~~~---~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~~ 148 (261)
T 4gek_A 72 TQVYDLGCSLGAATLSVRRNIHHDNC---KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 148 (261)
T ss_dssp CEEEEETCTTTHHHHHHHHTCCSSSC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEESC
T ss_pred CEEEEEeCCCCHHHHHHHHhcCCCCC---EEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeeee
Confidence 47999999999999988764 44 789999999999999876 33222222356677788 88999999988
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
+.+.... +...+|.|+.|+|||||.+|++|.
T Consensus 149 l~~~~~~-~~~~~l~~i~~~LkpGG~lii~e~ 179 (261)
T 4gek_A 149 LQFLEPS-ERQALLDKIYQGLNPGGALVLSEK 179 (261)
T ss_dssp GGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeecCch-hHhHHHHHHHHHcCCCcEEEEEec
Confidence 8876532 446799999999999999999864
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.2e-11 Score=124.14 Aligned_cols=93 Identities=16% Similarity=0.178 Sum_probs=76.0
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceeccccccCCCCC-CccceeeeccccccCCCCC
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYP-RTYDLIHADSVFSLYKDRC 549 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~yp-~t~Dlih~~~~f~~~~~~c 549 (626)
.+|||+|||+|.++..|++.+. +|+++|.++.|++.+.++.-+...+.-.|.++ +| ++||+|.|..+|++.
T Consensus 41 ~~vLDvGcGtG~~~~~l~~~~~---~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~-~~~~sfD~v~~~~~~h~~---- 112 (257)
T 4hg2_A 41 GDALDCGCGSGQASLGLAEFFE---RVHAVDPGEAQIRQALRHPRVTYAVAPAEDTG-LPPASVDVAIAAQAMHWF---- 112 (257)
T ss_dssp SEEEEESCTTTTTHHHHHTTCS---EEEEEESCHHHHHTCCCCTTEEEEECCTTCCC-CCSSCEEEEEECSCCTTC----
T ss_pred CCEEEEcCCCCHHHHHHHHhCC---EEEEEeCcHHhhhhhhhcCCceeehhhhhhhc-ccCCcccEEEEeeehhHh----
Confidence 4799999999999999999875 79999999999988876654555553344443 45 999999999998443
Q ss_pred CHHHHHHHhhhhccCCcEEEEE
Q 006905 550 ETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 550 ~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
+.+.++.|+.|||||||.|++.
T Consensus 113 ~~~~~~~e~~rvLkpgG~l~~~ 134 (257)
T 4hg2_A 113 DLDRFWAELRRVARPGAVFAAV 134 (257)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEE
T ss_pred hHHHHHHHHHHHcCCCCEEEEE
Confidence 5688999999999999999885
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-10 Score=119.00 Aligned_cols=100 Identities=14% Similarity=0.183 Sum_probs=79.7
Q ss_pred CceeEEeccCchhhHhhhhhC-CCeEEEEeccCccCcccHHHHHHh----cccceeccccccCCCCCCccceeeeccccc
Q 006905 469 RYRNILDMNAHLGGFAAALID-FPVWVMNVVPAEAKINTLGVIYER----GLVGTYTNWCEAMSTYPRTYDLIHADSVFS 543 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~-~~v~~mnv~~~~~~~~~l~~~~~r----gli~~~~~~~e~~~~yp~t~Dlih~~~~f~ 543 (626)
.-.+|||+|||.|+++..|++ .+. +|+.+|.++.+++.+.++ |+...+.-.+..+..+|.+||+|++..+|.
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~fD~v~~~~~l~ 140 (287)
T 1kpg_A 64 PGMTLLDVGCGWGATMMRAVEKYDV---NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRIVSIGAFE 140 (287)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSEEEEESCGG
T ss_pred CcCEEEEECCcccHHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCeeEEEEeCchh
Confidence 356899999999999999984 465 899999999999998887 432212212244455679999999999999
Q ss_pred cCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 544 LYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 544 ~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
+... -+...+|.|+.|+|||||.+++.+
T Consensus 141 ~~~~-~~~~~~l~~~~~~LkpgG~l~~~~ 168 (287)
T 1kpg_A 141 HFGH-ERYDAFFSLAHRLLPADGVMLLHT 168 (287)
T ss_dssp GTCT-TTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hcCh-HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 8854 367899999999999999999975
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=7.3e-11 Score=117.04 Aligned_cols=101 Identities=14% Similarity=0.186 Sum_probs=76.8
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccC-C--CCCCCeeEEEecc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERL-P--YPSRAFDMAHCSR 283 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~L-p--f~d~sFDlV~~~~ 283 (626)
..+|||||||+|.++..|++. .++++|+++.++..+.. .+.+.++ ++.+..+|+..+ + +++++||.|++++
T Consensus 35 ~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~-~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 35 APVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLA-SAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHH-HHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHH-HHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 458999999999999999875 48899998866654443 3444554 467777786653 4 7789999999986
Q ss_pred ccccccccH--------HHHHHHHHhcccCCeEEEEEeC
Q 006905 284 CLIPWNQFG--------GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 284 ~l~h~~~~~--------~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.. +|+... ..++.++.|+|||||+|+++..
T Consensus 114 ~~-p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 114 PD-PWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp CC-CCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CC-CccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 54 554432 2599999999999999999854
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.5e-10 Score=110.82 Aligned_cols=110 Identities=12% Similarity=0.057 Sum_probs=80.5
Q ss_pred HHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCCCC
Q 006905 196 AYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLPYP 272 (626)
Q Consensus 196 ~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lpf~ 272 (626)
.....+.+.+...+ +.+|||+|||+|.++..|++. .++++|+++..+..+..+. ...+. .+.+...|....+.+
T Consensus 64 ~~~~~~~~~l~~~~--~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~v~~~~~d~~~~~~~ 140 (210)
T 3lbf_A 64 YMVARMTELLELTP--QSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRL-KNLDLHNVSTRHGDGWQGWQA 140 (210)
T ss_dssp HHHHHHHHHTTCCT--TCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHH-HHTTCCSEEEEESCGGGCCGG
T ss_pred HHHHHHHHhcCCCC--CCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHH-HHcCCCceEEEECCcccCCcc
Confidence 34455556654443 559999999999999999886 6888888775554333322 23344 467777887776666
Q ss_pred CCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 006905 273 SRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPP 315 (626)
Q Consensus 273 d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~pp 315 (626)
+++||+|++..++++..+ ++.++|||||++++..++
T Consensus 141 ~~~~D~i~~~~~~~~~~~-------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 141 RAPFDAIIVTAAPPEIPT-------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp GCCEEEEEESSBCSSCCT-------HHHHTEEEEEEEEEEECS
T ss_pred CCCccEEEEccchhhhhH-------HHHHhcccCcEEEEEEcC
Confidence 789999999998866553 588999999999998764
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.6e-10 Score=131.27 Aligned_cols=118 Identities=19% Similarity=0.207 Sum_probs=88.1
Q ss_pred HHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhCC-----cEEEeCCccchHHHHHHHHHH-----cCC-CeEEEEc
Q 006905 196 AYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSRN-----IITMSFAPRDTHEAQVQFALE-----RGV-PALIGVL 264 (626)
Q Consensus 196 ~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~~-----V~avdis~~dls~a~i~~A~e-----rg~-~~~~~v~ 264 (626)
..++.+.+.+.... +.+|||||||+|.++..|++++ |+++|+++.++..+..+.... .+. .+.+.++
T Consensus 708 qRle~LLelL~~~~--g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqG 785 (950)
T 3htx_A 708 QRVEYALKHIRESS--ASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDG 785 (950)
T ss_dssp HHHHHHHHHHHHSC--CSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEES
T ss_pred HHHHHHHHHhcccC--CCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEEC
Confidence 34455556655443 5599999999999999999864 778888775555443332221 132 4778888
Q ss_pred ccccCCCCCCCeeEEEeccccccccccH-HHHHHHHHhcccCCeEEEEEeCCC
Q 006905 265 AAERLPYPSRAFDMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILSGPPI 316 (626)
Q Consensus 265 d~~~Lpf~d~sFDlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~pp~ 316 (626)
|...+++++++||+|+|..+++|+.+.. ..++.++.|+|||| .++++.+..
T Consensus 786 Da~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ 837 (950)
T 3htx_A 786 SILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY 837 (950)
T ss_dssp CTTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred chHhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence 9999999999999999999998887643 46899999999999 888877643
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=6.5e-11 Score=118.51 Aligned_cols=114 Identities=16% Similarity=0.172 Sum_probs=78.5
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC-------------------
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV------------------- 257 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~------------------- 257 (626)
.+..++......+.+|||||||+|.++..++.. .++++|+++.++..+..... ..+.
T Consensus 45 ~l~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 123 (265)
T 2i62_A 45 NLFKIFCLGAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLK-KEPGAFDWSPVVTYVCDLEGNRM 123 (265)
T ss_dssp HHHHHHHSSSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHT-TCTTCCCCHHHHHHHHHHTTTCS
T ss_pred HHHHHhcccccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHh-cCCccccchhhhhhhhccccccc
Confidence 344444443334568999999999999888876 56788887755443322211 1110
Q ss_pred -----------Ce-EEEEcccccCC-CCC---CCeeEEEeccccccccc---cHHHHHHHHHhcccCCeEEEEEeC
Q 006905 258 -----------PA-LIGVLAAERLP-YPS---RAFDMAHCSRCLIPWNQ---FGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 258 -----------~~-~~~v~d~~~Lp-f~d---~sFDlV~~~~~l~h~~~---~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.+ .+..+|...++ +++ ++||+|+|+.++++... +...+|.++.|+|||||+|++...
T Consensus 124 ~~~~~~~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 199 (265)
T 2i62_A 124 KGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDA 199 (265)
T ss_dssp CHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred chHHHHHHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEec
Confidence 04 67777866653 355 89999999999963332 357899999999999999999863
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.12 E-value=4.6e-11 Score=118.79 Aligned_cols=117 Identities=10% Similarity=0.127 Sum_probs=90.5
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceec-cccccCCCCC-CccceeeeccccccCCC
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYT-NWCEAMSTYP-RTYDLIHADSVFSLYKD 547 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~-~~~e~~~~yp-~t~Dlih~~~~f~~~~~ 547 (626)
-.+|||+|||.|.++.+|++.+. +|+.+|.++.+++.+.++ +.... |..+...++| ++||+|.+..++.+...
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~ 116 (240)
T 3dli_A 42 CRRVLDIGCGRGEFLELCKEEGI---ESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDP 116 (240)
T ss_dssp CSCEEEETCTTTHHHHHHHHHTC---CEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEEEEESCGGGSCG
T ss_pred CCeEEEEeCCCCHHHHHHHhCCC---cEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEEEECCchhhCCc
Confidence 46799999999999999998876 689999999999999988 44443 2222222566 99999999999998874
Q ss_pred CCCHHHHHHHhhhhccCCcEEEEEcChH-------------------HHHHHHHHHHhCCCeeE
Q 006905 548 RCETEDILLEMDRILRPEGGVIFRDDVD-------------------ELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 548 ~c~~~~~l~E~dRiLRPgG~~i~~d~~~-------------------~~~~~~~~~~~l~w~~~ 592 (626)
-++..+|.|+.|+|||||++++..... ....++.+++.-.++..
T Consensus 117 -~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~ 179 (240)
T 3dli_A 117 -ERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDV 179 (240)
T ss_dssp -GGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEE
T ss_pred -HHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEE
Confidence 366899999999999999999974321 13566666666666644
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.12 E-value=2.8e-10 Score=111.37 Aligned_cols=101 Identities=17% Similarity=0.189 Sum_probs=76.9
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCC--CCCCCeeEEEeccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLP--YPSRAFDMAHCSRC 284 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lp--f~d~sFDlV~~~~~ 284 (626)
+.+|||||||+|.++..+++. .++++|+++..+..+..+ +...++ .+.+..+|...++ +++++||+|+++..
T Consensus 42 ~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~-~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 42 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDK-VLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHH-HHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHH-HHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 458999999999999988875 588999988655544433 333444 5777888877777 77889999999875
Q ss_pred ccccccc--------HHHHHHHHHhcccCCeEEEEEeC
Q 006905 285 LIPWNQF--------GGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 285 l~h~~~~--------~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
. +|... ...++.++.++|||||.|++...
T Consensus 121 ~-~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (214)
T 1yzh_A 121 D-PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD 157 (214)
T ss_dssp C-CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred C-CccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeC
Confidence 4 44321 25799999999999999999753
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.12 E-value=9.3e-10 Score=114.07 Aligned_cols=131 Identities=12% Similarity=0.086 Sum_probs=84.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEE-EcccccCC---CCCCCeeEEEecc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPALIG-VLAAERLP---YPSRAFDMAHCSR 283 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~~~~-v~d~~~Lp---f~d~sFDlV~~~~ 283 (626)
.+.+|||||||+|.++..|+++ .|+++|+++.++..+ .+....+... ..++..++ ++..+||+|+|..
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a-----~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~ 159 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWK-----LRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDV 159 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHH-----HHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECC
T ss_pred cccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHH-----HHhCcccceecccCceecchhhCCCCCCCEEEEEe
Confidence 3568999999999999998886 589999999877642 2222222221 12233333 3445699999988
Q ss_pred ccccccccHHHHHHHHHhcccCCeEEEEEeCCCCccccc----ccccchhhhhHHHHHHHHHHHHhhchhh
Q 006905 284 CLIPWNQFGGIYLIEVDRVLRPGGYWILSGPPINWKKHA----RGWQRTKEDLNKEQTAIENVAKSLCWEK 350 (626)
Q Consensus 284 ~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~pp~~w~~~~----~~w~~~~e~l~~~~~~ie~l~~~l~w~~ 350 (626)
++++. ..+|.++.|+|||||.|++...|..-.... .+..+..........++..++...+|..
T Consensus 160 sf~sl----~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v 226 (291)
T 3hp7_A 160 SFISL----NLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSV 226 (291)
T ss_dssp SSSCG----GGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEE
T ss_pred eHhhH----HHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEE
Confidence 87543 678999999999999999985443211111 1222333444444566777777777743
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.12 E-value=7.7e-10 Score=107.16 Aligned_cols=109 Identities=16% Similarity=-0.016 Sum_probs=78.6
Q ss_pred HHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCCCCC
Q 006905 199 DDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLPYPS 273 (626)
Q Consensus 199 ~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lpf~d 273 (626)
..+...+.... +.+|||+|||+|.++..+++. .++++|+++..+..+..+.. ..+. .+.+...|........
T Consensus 30 ~~~l~~l~~~~--~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~v~~~~~d~~~~~~~~ 106 (204)
T 3e05_A 30 AVTLSKLRLQD--DLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLK-KFVARNVTLVEAFAPEGLDDL 106 (204)
T ss_dssp HHHHHHTTCCT--TCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHH-HHTCTTEEEEECCTTTTCTTS
T ss_pred HHHHHHcCCCC--CCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH-HhCCCcEEEEeCChhhhhhcC
Confidence 34444554333 459999999999999999886 48888888765554443332 3344 4667777764443334
Q ss_pred CCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 274 RAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 274 ~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++||+|++..++. +...++.++.++|||||.+++...
T Consensus 107 ~~~D~i~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~ 143 (204)
T 3e05_A 107 PDPDRVFIGGSGG----MLEEIIDAVDRRLKSEGVIVLNAV 143 (204)
T ss_dssp CCCSEEEESCCTT----CHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred CCCCEEEECCCCc----CHHHHHHHHHHhcCCCeEEEEEec
Confidence 6799999988763 458899999999999999999854
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.12 E-value=2.6e-10 Score=112.53 Aligned_cols=96 Identities=17% Similarity=0.171 Sum_probs=77.1
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-----cceeccccccCCC--CCCccceeeecc-c
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-----VGTYTNWCEAMST--YPRTYDLIHADS-V 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-----i~~~~~~~e~~~~--yp~t~Dlih~~~-~ 541 (626)
-.+|||+|||.|.++..|++.+. +|+.+|.++.+++.+.++.- +...+ ..+.. ++.+||+|.+.. +
T Consensus 38 ~~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~fD~v~~~~~~ 111 (246)
T 1y8c_A 38 FDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLAC---QDISNLNINRKFDLITCCLDS 111 (246)
T ss_dssp TTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEEC---CCGGGCCCSCCEEEEEECTTG
T ss_pred CCeEEEeCCCCCHHHHHHHHCCC---cEEEEECCHHHHHHHHHHHhhcCCCeEEEe---cccccCCccCCceEEEEcCcc
Confidence 45899999999999999999875 79999999999998887731 23333 22222 348999999998 9
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
|.+..+.-+...+|.++.|+|||||.+++.
T Consensus 112 l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 141 (246)
T 1y8c_A 112 TNYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp GGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 998854446788999999999999999984
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.12 E-value=3.1e-10 Score=111.78 Aligned_cols=97 Identities=10% Similarity=0.038 Sum_probs=70.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEccccc----CCCCCCCeeEEEec
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAER----LPYPSRAFDMAHCS 282 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~----Lpf~d~sFDlV~~~ 282 (626)
++.+|||+|||+|.++..|++. .|+++|+++.++. .+++.++.+ .++.+.+.|... .++. ++||+|+|+
T Consensus 57 ~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~-~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~ 133 (210)
T 1nt2_A 57 GDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFE-KLLELVRER-NNIIPLLFDASKPWKYSGIV-EKVDLIYQD 133 (210)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHH-HHHHHHHHC-SSEEEECSCTTCGGGTTTTC-CCEEEEEEC
T ss_pred CCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHH-HHHHHHhcC-CCeEEEEcCCCCchhhcccc-cceeEEEEe
Confidence 4568999999999999888774 5899999886543 344555544 245566666554 3454 789999997
Q ss_pred cccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 283 RCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 283 ~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
. . .+.....++.++.|+|||||.|+++.
T Consensus 134 ~-~--~~~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 134 I-A--QKNQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp C-C--STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c-c--ChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 4 2 12333556999999999999999984
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-10 Score=116.05 Aligned_cols=99 Identities=11% Similarity=0.017 Sum_probs=75.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcC--CCeEEEEcccccCCCCC-----CCeeEEEe
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERG--VPALIGVLAAERLPYPS-----RAFDMAHC 281 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg--~~~~~~v~d~~~Lpf~d-----~sFDlV~~ 281 (626)
++.+|||||||+|.++..|++. .++++|+++. +++.++++. ..+.+.++|...+++.. ..||+|++
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~-----~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~ 130 (245)
T 3ggd_A 56 PELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKS-----ALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYM 130 (245)
T ss_dssp TTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHH-----HHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHH-----HHHHHHHhCcccCceEEECcccccccccccccccCccEEEE
Confidence 3558999999999999999886 6888888664 444554432 25777777877655332 34999999
Q ss_pred ccccccccc-cHHHHHHHHHhcccCCeEEEEEeC
Q 006905 282 SRCLIPWNQ-FGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 282 ~~~l~h~~~-~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+.+++|... +...++.++.++|||||++++...
T Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 164 (245)
T 3ggd_A 131 RTGFHHIPVEKRELLGQSLRILLGKQGAMYLIEL 164 (245)
T ss_dssp ESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred cchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 999976653 348999999999999999888754
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.11 E-value=2.1e-10 Score=111.82 Aligned_cols=120 Identities=11% Similarity=0.051 Sum_probs=81.4
Q ss_pred cHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC---CeEEEEccc
Q 006905 193 GADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV---PALIGVLAA 266 (626)
Q Consensus 193 ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~---~~~~~v~d~ 266 (626)
..+.+.+.+.+.+... ..+.+|||+|||+|.++..++.+ .|+++|+++.++..+..+ +...++ .+.+..+|.
T Consensus 36 ~~~~~~~~l~~~l~~~-~~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~-~~~~~~~~~~v~~~~~d~ 113 (201)
T 2ift_A 36 TGDRVKETLFNWLMPY-IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKN-LQTLKCSSEQAEVINQSS 113 (201)
T ss_dssp --CHHHHHHHHHHHHH-HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHH-HHHTTCCTTTEEEECSCH
T ss_pred CHHHHHHHHHHHHHHh-cCCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHH-HHHhCCCccceEEEECCH
Confidence 3344545555555421 12458999999999999986665 488899888666544433 334454 567777776
Q ss_pred ccC-C-CCCCC-eeEEEeccccccccccHHHHHHHH--HhcccCCeEEEEEeCCC
Q 006905 267 ERL-P-YPSRA-FDMAHCSRCLIPWNQFGGIYLIEV--DRVLRPGGYWILSGPPI 316 (626)
Q Consensus 267 ~~L-p-f~d~s-FDlV~~~~~l~h~~~~~~~~L~Ei--~RvLKPGG~lvis~pp~ 316 (626)
..+ + +++++ ||+|+++..+ + ......++.++ .|+|||||.++++..+.
T Consensus 114 ~~~~~~~~~~~~fD~I~~~~~~-~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 114 LDFLKQPQNQPHFDVVFLDPPF-H-FNLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp HHHTTSCCSSCCEEEEEECCCS-S-SCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred HHHHHhhccCCCCCEEEECCCC-C-CccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 554 3 24678 9999998875 3 23347788888 77899999999986544
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.3e-10 Score=108.85 Aligned_cols=139 Identities=14% Similarity=0.066 Sum_probs=93.1
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceeccccccCCCCC-Cccceeeec-cc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYTNWCEAMSTYP-RTYDLIHAD-SV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~~~~e~~~~yp-~t~Dlih~~-~~ 541 (626)
-.+|||+|||+|.++..|++.+. +|+.+|.++.+++.+.++ |+ +.+.++-.+.+..++ .+||+|.++ +.
T Consensus 23 ~~~vLDiGcG~G~~~~~la~~~~---~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~ 99 (185)
T 3mti_A 23 ESIVVDATMGNGNDTAFLAGLSK---KVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGY 99 (185)
T ss_dssp TCEEEESCCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC-
T ss_pred CCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCC
Confidence 35799999999999999999854 799999999999988766 33 344444444544455 899999876 22
Q ss_pred cccCC-----CCCCHHHHHHHhhhhccCCcEEEEEcC------hHHHHHHHHHHHhCC---CeeEEeecCCCCCCcceEE
Q 006905 542 FSLYK-----DRCETEDILLEMDRILRPEGGVIFRDD------VDELVKVKRIIDALK---WQSQIVDHEDGPLEREKLL 607 (626)
Q Consensus 542 f~~~~-----~~c~~~~~l~E~dRiLRPgG~~i~~d~------~~~~~~~~~~~~~l~---w~~~~~~~e~~~~~~e~~l 607 (626)
+.... ..-....+|.|+.|+|||||.+++..- .+....+.+.+..+. |.+.....-+....+..++
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 179 (185)
T 3mti_A 100 LPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPLNQINTPPFLV 179 (185)
T ss_dssp ----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEEEEESSCSSCCCEEE
T ss_pred CCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEehhhccCCCCCeEE
Confidence 22100 111234688999999999999999642 234566777777766 6665444433333445566
Q ss_pred EEEe
Q 006905 608 FAVK 611 (626)
Q Consensus 608 ~~~K 611 (626)
+..|
T Consensus 180 ~i~~ 183 (185)
T 3mti_A 180 MLEK 183 (185)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5555
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.9e-10 Score=110.61 Aligned_cols=102 Identities=13% Similarity=0.108 Sum_probs=75.8
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCC-CCCCCeeEEEecc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLP-YPSRAFDMAHCSR 283 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lp-f~d~sFDlV~~~~ 283 (626)
+.+|||+|||+|.++..++++ .++++|+++..+..+... +...++ .+.+..+|...++ +.+++||+|+++.
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 101 (197)
T 3eey_A 23 GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKK-LTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNL 101 (197)
T ss_dssp TCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHH-HHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEE
T ss_pred CCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcC
Confidence 458999999999999988875 688999887655544333 334444 4677778877775 6678999999987
Q ss_pred cccccc--------ccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 284 CLIPWN--------QFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 284 ~l~h~~--------~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.+.+.. .+...++.++.++|||||++++...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 140 (197)
T 3eey_A 102 GYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY 140 (197)
T ss_dssp SBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence 552211 1235799999999999999999864
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.4e-10 Score=108.62 Aligned_cols=129 Identities=17% Similarity=0.190 Sum_probs=96.1
Q ss_pred CceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-cceeccccccCCCCC-CccceeeeccccccCC
Q 006905 469 RYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-VGTYTNWCEAMSTYP-RTYDLIHADSVFSLYK 546 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-i~~~~~~~e~~~~yp-~t~Dlih~~~~f~~~~ 546 (626)
.-.+|||+|||.|.++..|++..- +|+.+|.++.+++.+.++.- +..++ .. ..+| ++||+|.+..++.+..
T Consensus 17 ~~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~v~~~~---~d-~~~~~~~~D~v~~~~~l~~~~ 89 (170)
T 3i9f_A 17 KKGVIVDYGCGNGFYCKYLLEFAT---KLYCIDINVIALKEVKEKFDSVITLS---DP-KEIPDNSVDFILFANSFHDMD 89 (170)
T ss_dssp CCEEEEEETCTTCTTHHHHHTTEE---EEEEECSCHHHHHHHHHHCTTSEEES---SG-GGSCTTCEEEEEEESCSTTCS
T ss_pred CCCeEEEECCCCCHHHHHHHhhcC---eEEEEeCCHHHHHHHHHhCCCcEEEe---CC-CCCCCCceEEEEEccchhccc
Confidence 357899999999999999999862 89999999999999998821 22332 23 4455 8999999999999886
Q ss_pred CCCCHHHHHHHhhhhccCCcEEEEEcChH-------------HHHHHHHHHHhCCCeeEEeecCCCCCCcceEEEEEec
Q 006905 547 DRCETEDILLEMDRILRPEGGVIFRDDVD-------------ELVKVKRIIDALKWQSQIVDHEDGPLEREKLLFAVKL 612 (626)
Q Consensus 547 ~~c~~~~~l~E~dRiLRPgG~~i~~d~~~-------------~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K~ 612 (626)
+...+|.|+.|+|||||.+++.+... ....++++++ .|+......- + .....+++.|+
T Consensus 90 ---~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~~--~-~~~~~l~~~~~ 160 (170)
T 3i9f_A 90 ---DKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFNP--T-PYHFGLVLKRK 160 (170)
T ss_dssp ---CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEECS--S-TTEEEEEEEEC
T ss_pred ---CHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccCC--C-CceEEEEEecC
Confidence 56899999999999999999985321 2456666666 6665433211 1 24567777664
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.9e-10 Score=106.87 Aligned_cols=110 Identities=14% Similarity=0.046 Sum_probs=75.0
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEccc-ccCC
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAA-ERLP 270 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~-~~Lp 270 (626)
....+.+.+... ++.+|||+|||+|.++..+++. .++++|+++..+..+. +.+...+.+ ..+...+. +.++
T Consensus 13 ~~~~~~~~~~~~--~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~-~~~~~~~~~~~~~~~~d~~~~~~ 89 (178)
T 3hm2_A 13 VRALAISALAPK--PHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERIL-SNAINLGVSDRIAVQQGAPRAFD 89 (178)
T ss_dssp HHHHHHHHHCCC--TTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHH-HHHHTTTCTTSEEEECCTTGGGG
T ss_pred HHHHHHHHhccc--CCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHH-HHHHHhCCCCCEEEecchHhhhh
Confidence 334445555433 3558999999999999998876 4788888775444332 222334554 22555554 3444
Q ss_pred CCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 271 YPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 271 f~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
..+++||+|+++.++++ ..++.++.++|||||.+++...
T Consensus 90 ~~~~~~D~i~~~~~~~~-----~~~l~~~~~~L~~gG~l~~~~~ 128 (178)
T 3hm2_A 90 DVPDNPDVIFIGGGLTA-----PGVFAAAWKRLPVGGRLVANAV 128 (178)
T ss_dssp GCCSCCSEEEECC-TTC-----TTHHHHHHHTCCTTCEEEEEEC
T ss_pred ccCCCCCEEEECCcccH-----HHHHHHHHHhcCCCCEEEEEee
Confidence 43478999999998854 5689999999999999999854
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.5e-10 Score=113.84 Aligned_cols=101 Identities=14% Similarity=0.148 Sum_probs=76.0
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCC--CCCCCeeEEEeccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLP--YPSRAFDMAHCSRC 284 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lp--f~d~sFDlV~~~~~ 284 (626)
..+|||||||+|.++..|++. .++++|+++.++..+.. .+.+.+. ++.+..+|+..++ +++++||.|+++..
T Consensus 39 ~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~-~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 39 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQ-KVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHH-HHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHH-HHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 458999999999999998875 58888887765554333 3334454 4677778877776 77889999998765
Q ss_pred ccccccc--------HHHHHHHHHhcccCCeEEEEEeC
Q 006905 285 LIPWNQF--------GGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 285 l~h~~~~--------~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
. +|... ...++.++.++|||||.|++...
T Consensus 118 ~-p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td 154 (213)
T 2fca_A 118 D-PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD 154 (213)
T ss_dssp C-CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred C-CCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeC
Confidence 4 44321 26789999999999999999853
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.11 E-value=8.3e-11 Score=116.29 Aligned_cols=87 Identities=15% Similarity=0.241 Sum_probs=71.5
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEccc-ccCCCC-CCCeeEEEecccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAA-ERLPYP-SRAFDMAHCSRCLIP 287 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~-~~Lpf~-d~sFDlV~~~~~l~h 287 (626)
+.+|||||||+|.++..|++. .++++|+++ .+++.++++...+.+...|. ..+|++ +++||+|+++.
T Consensus 49 ~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~-----~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~---- 119 (226)
T 3m33_A 49 QTRVLEAGCGHGPDAARFGPQAARWAAYDFSP-----ELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR---- 119 (226)
T ss_dssp TCEEEEESCTTSHHHHHHGGGSSEEEEEESCH-----HHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES----
T ss_pred CCeEEEeCCCCCHHHHHHHHcCCEEEEEECCH-----HHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC----
Confidence 458999999999999999987 466666644 56667766666678888887 678888 89999999972
Q ss_pred ccccHHHHHHHHHhcccCCeEEE
Q 006905 288 WNQFGGIYLIEVDRVLRPGGYWI 310 (626)
Q Consensus 288 ~~~~~~~~L~Ei~RvLKPGG~lv 310 (626)
+...++.++.++|||||.++
T Consensus 120 ---~~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 120 ---GPTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp ---CCSGGGGGHHHHEEEEEEEE
T ss_pred ---CHHHHHHHHHHHcCCCcEEE
Confidence 34678999999999999999
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.10 E-value=3.6e-10 Score=114.15 Aligned_cols=111 Identities=12% Similarity=0.118 Sum_probs=79.6
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCcc------chHHHHHHHHHHcCC--CeEEEEcc-
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPR------DTHEAQVQFALERGV--PALIGVLA- 265 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~------dls~a~i~~A~erg~--~~~~~v~d- 265 (626)
.+.+.+... ++.+|||||||+|.++..++++ .++++|+++. ++..++. .....+. .+.+...|
T Consensus 34 ~l~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~-~~~~~~~~~~v~~~~~d~ 110 (275)
T 3bkx_A 34 AIAEAWQVK--PGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWN-HLLAGPLGDRLTVHFNTN 110 (275)
T ss_dssp HHHHHHTCC--TTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHH-HHHTSTTGGGEEEECSCC
T ss_pred HHHHHcCCC--CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHH-HHHhcCCCCceEEEECCh
Confidence 444444333 3559999999999999988874 5888999875 4543333 3333343 36677776
Q ss_pred --cccCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 266 --AERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 266 --~~~Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
...+|+++++||+|++..+++|+.+ +..++..+.++++|||++++...
T Consensus 111 ~~~~~~~~~~~~fD~v~~~~~l~~~~~-~~~~~~~~~~l~~~gG~l~~~~~ 160 (275)
T 3bkx_A 111 LSDDLGPIADQHFDRVVLAHSLWYFAS-ANALALLFKNMAAVCDHVDVAEW 160 (275)
T ss_dssp TTTCCGGGTTCCCSEEEEESCGGGSSC-HHHHHHHHHHHTTTCSEEEEEEE
T ss_pred hhhccCCCCCCCEEEEEEccchhhCCC-HHHHHHHHHHHhCCCCEEEEEEe
Confidence 5567788899999999999977765 45667777777777999999753
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.3e-10 Score=114.45 Aligned_cols=95 Identities=19% Similarity=0.257 Sum_probs=77.6
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc--cceeccccccCCCCCCccceeeeccccccCCCC
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL--VGTYTNWCEAMSTYPRTYDLIHADSVFSLYKDR 548 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl--i~~~~~~~e~~~~yp~t~Dlih~~~~f~~~~~~ 548 (626)
.+|||+|||.|.++..|++.+. +|+.+|.++.+++.+.++.- +..++.-.+.+ ..+.+||+|++..++.|..
T Consensus 44 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~-- 117 (250)
T 2p7i_A 44 GNLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVLEHID-- 117 (250)
T ss_dssp SCEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCGGGCS--
T ss_pred CcEEEECCCCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHHHhhc--
Confidence 3699999999999999998865 78999999999999998842 33333222233 2248999999999999886
Q ss_pred CCHHHHHHHhh-hhccCCcEEEEEc
Q 006905 549 CETEDILLEMD-RILRPEGGVIFRD 572 (626)
Q Consensus 549 c~~~~~l~E~d-RiLRPgG~~i~~d 572 (626)
+.+.+|.|+. |+|||||++++.+
T Consensus 118 -~~~~~l~~~~~~~LkpgG~l~i~~ 141 (250)
T 2p7i_A 118 -DPVALLKRINDDWLAEGGRLFLVC 141 (250)
T ss_dssp -SHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred -CHHHHHHHHHHHhcCCCCEEEEEc
Confidence 4589999999 9999999999986
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.6e-10 Score=119.17 Aligned_cols=101 Identities=12% Similarity=0.106 Sum_probs=79.9
Q ss_pred CceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHh----cccceeccccccCCCCCCccceeeeccccc
Q 006905 469 RYRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYER----GLVGTYTNWCEAMSTYPRTYDLIHADSVFS 543 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~r----gli~~~~~~~e~~~~yp~t~Dlih~~~~f~ 543 (626)
.-.+|||+|||.|+++..|++. +. +|+.+|.++.+++.+.++ |+-+.++-.+..+..++.+||+|.+..+|.
T Consensus 72 ~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD~v~~~~~~~ 148 (302)
T 3hem_A 72 PGMTLLDIGCGWGSTMRHAVAEYDV---NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDRIVSLGAFE 148 (302)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCC---EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSEEEEESCGG
T ss_pred CcCEEEEeeccCcHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHcCCCccEEEEcchHH
Confidence 3568999999999999999987 74 799999999999988877 332111112233334489999999999999
Q ss_pred cCCCC------CCHHHHHHHhhhhccCCcEEEEEc
Q 006905 544 LYKDR------CETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 544 ~~~~~------c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
+..+. -++..+|.++.|+|||||.+++.+
T Consensus 149 ~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 183 (302)
T 3hem_A 149 HFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 183 (302)
T ss_dssp GTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEE
T ss_pred hcCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 88543 456789999999999999999975
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.1e-09 Score=117.78 Aligned_cols=110 Identities=15% Similarity=0.185 Sum_probs=80.7
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc----c-cceeccccccCCCC--C-Cccceeeeccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG----L-VGTYTNWCEAMSTY--P-RTYDLIHADSV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg----l-i~~~~~~~e~~~~y--p-~t~Dlih~~~~ 541 (626)
-.+|||+|||+|.++..|++.+. +|+.+|.++.+++.+.++- + +.+++ ..+... + .+||+|.++..
T Consensus 234 ~~~VLDlGcG~G~~~~~la~~g~---~V~gvDis~~al~~A~~n~~~~~~~v~~~~---~D~~~~~~~~~~fD~Ii~npp 307 (381)
T 3dmg_A 234 GRQVLDLGAGYGALTLPLARMGA---EVVGVEDDLASVLSLQKGLEANALKAQALH---SDVDEALTEEARFDIIVTNPP 307 (381)
T ss_dssp TCEEEEETCTTSTTHHHHHHTTC---EEEEEESBHHHHHHHHHHHHHTTCCCEEEE---CSTTTTSCTTCCEEEEEECCC
T ss_pred CCEEEEEeeeCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCeEEEE---cchhhccccCCCeEEEEECCc
Confidence 45899999999999999999875 8999999989998877652 2 23333 222222 3 79999999988
Q ss_pred cccCCC--CCCHHHHHHHhhhhccCCcEEEEEcCh--HHHHHHHHHHH
Q 006905 542 FSLYKD--RCETEDILLEMDRILRPEGGVIFRDDV--DELVKVKRIID 585 (626)
Q Consensus 542 f~~~~~--~c~~~~~l~E~dRiLRPgG~~i~~d~~--~~~~~~~~~~~ 585 (626)
|.+... .-....++.++.|+|||||.++|.... .....+++...
T Consensus 308 ~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~~~l~~~f~ 355 (381)
T 3dmg_A 308 FHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLKYEPLLEEKFG 355 (381)
T ss_dssp CCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTSCHHHHHHHHHS
T ss_pred hhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCChHHHHHHhhc
Confidence 886432 224567999999999999999997543 23444555443
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.09 E-value=1.1e-10 Score=116.36 Aligned_cols=131 Identities=18% Similarity=0.148 Sum_probs=96.9
Q ss_pred hhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc----cceeccccccCCCCC-Cccc
Q 006905 460 MNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL----VGTYTNWCEAMSTYP-RTYD 534 (626)
Q Consensus 460 ~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl----i~~~~~~~e~~~~yp-~t~D 534 (626)
++..+.. ..-.+|||+|||.|.++..|++.+ ..+|+.+|.++.+++.+.++.- +...+.-.+.+ .+| ++||
T Consensus 85 ~l~~l~~-~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~-~~~~~~fD 160 (254)
T 1xtp_A 85 FIASLPG-HGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETA-TLPPNTYD 160 (254)
T ss_dssp HHHTSTT-CCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGC-CCCSSCEE
T ss_pred HHHhhcc-cCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHC-CCCCCCeE
Confidence 3443433 446789999999999999998875 2368899999999999988742 33333212222 244 8999
Q ss_pred eeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh----------------HHHHHHHHHHHhCCCeeEEee
Q 006905 535 LIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV----------------DELVKVKRIIDALKWQSQIVD 595 (626)
Q Consensus 535 lih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~----------------~~~~~~~~~~~~l~w~~~~~~ 595 (626)
+|++..++.+..+ -+...+|.++.|+|||||++++.+.. -....++++++...++.....
T Consensus 161 ~v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 236 (254)
T 1xtp_A 161 LIVIQWTAIYLTD-ADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEA 236 (254)
T ss_dssp EEEEESCGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEE
T ss_pred EEEEcchhhhCCH-HHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEee
Confidence 9999999998853 24678999999999999999998741 124778888888888876443
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.09 E-value=3e-10 Score=114.66 Aligned_cols=91 Identities=21% Similarity=0.367 Sum_probs=74.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEeccccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLI 286 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~ 286 (626)
++.+|||||||+|.++..+++. .++++|+++ .+++.+++++..+.+.+.|...+|+++++||+|+++.+.
T Consensus 85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~-----~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~- 158 (269)
T 1p91_A 85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSK-----VAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP- 158 (269)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCH-----HHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCH-----HHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-
Confidence 3568999999999999999876 466666644 566777777766788888888899999999999987653
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 287 PWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 287 h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.++.++.|+|||||.+++..+
T Consensus 159 -------~~l~~~~~~L~pgG~l~~~~~ 179 (269)
T 1p91_A 159 -------CKAEELARVVKPGGWVITATP 179 (269)
T ss_dssp -------CCHHHHHHHEEEEEEEEEEEE
T ss_pred -------hhHHHHHHhcCCCcEEEEEEc
Confidence 248999999999999999865
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.09 E-value=1.4e-10 Score=108.22 Aligned_cols=123 Identities=15% Similarity=0.126 Sum_probs=82.3
Q ss_pred CCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccc
Q 006905 190 FPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAE 267 (626)
Q Consensus 190 F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~ 267 (626)
+........+.+.+.+......+.+|||+|||+|.++..++++ .++++|+++..+..+..+. ...+..+.+...|..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~~~~~d~~ 98 (171)
T 1ws6_A 20 ARPSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENV-RRTGLGARVVALPVE 98 (171)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHH-HHHTCCCEEECSCHH
T ss_pred CCCCHHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHH-HHcCCceEEEeccHH
Confidence 3344555666666666532113458999999999999999886 4788888775554443333 233446677777755
Q ss_pred c-CCC---CCCCeeEEEeccccccccccHHHHHHHHH--hcccCCeEEEEEeCCC
Q 006905 268 R-LPY---PSRAFDMAHCSRCLIPWNQFGGIYLIEVD--RVLRPGGYWILSGPPI 316 (626)
Q Consensus 268 ~-Lpf---~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~--RvLKPGG~lvis~pp~ 316 (626)
. ++. ..++||+|+++..++ .....++..+. ++|||||.++++.++.
T Consensus 99 ~~~~~~~~~~~~~D~i~~~~~~~---~~~~~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 99 VFLPEAKAQGERFTVAFMAPPYA---MDLAALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp HHHHHHHHTTCCEEEEEECCCTT---SCTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred HHHHhhhccCCceEEEEECCCCc---hhHHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence 4 221 134799999988763 23356677777 9999999999987543
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=9.8e-11 Score=114.08 Aligned_cols=100 Identities=18% Similarity=0.308 Sum_probs=81.6
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc----cceeccccccCCCC--CCccceeeeccc
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL----VGTYTNWCEAMSTY--PRTYDLIHADSV 541 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl----i~~~~~~~e~~~~y--p~t~Dlih~~~~ 541 (626)
..-.+|||+|||.|.++..|++.+. +|+.+|.++.+++.+.++.- +..++ ..+..+ +.+||+|.|..+
T Consensus 50 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~---~d~~~~~~~~~fD~v~~~~~ 123 (216)
T 3ofk_A 50 GAVSNGLEIGCAAGAFTEKLAPHCK---RLTVIDVMPRAIGRACQRTKRWSHISWAA---TDILQFSTAELFDLIVVAEV 123 (216)
T ss_dssp SSEEEEEEECCTTSHHHHHHGGGEE---EEEEEESCHHHHHHHHHHTTTCSSEEEEE---CCTTTCCCSCCEEEEEEESC
T ss_pred CCCCcEEEEcCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHhcccCCCeEEEE---cchhhCCCCCCccEEEEccH
Confidence 5578899999999999999999853 89999999999999988753 23333 333333 399999999999
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
|.+..+.-.+..+|.++.|+|||||.+++++.
T Consensus 124 l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 124 LYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred HHhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 99988654556789999999999999999753
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.6e-10 Score=110.24 Aligned_cols=95 Identities=14% Similarity=0.204 Sum_probs=76.3
Q ss_pred eEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc---cceeccccccCCCCC-Cccceeeeccccc
Q 006905 472 NILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL---VGTYTNWCEAMSTYP-RTYDLIHADSVFS 543 (626)
Q Consensus 472 ~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~~~~e~~~~yp-~t~Dlih~~~~f~ 543 (626)
+|||+|||.|.++..|++.+ ..+|+.+|.++.+++.+.++ |+ +..++.-.+.++ +| ++||+|.+..++.
T Consensus 46 ~vLdiG~G~G~~~~~l~~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~l~ 122 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQS--DFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIP-IEDNYADLIVSRGSVF 122 (219)
T ss_dssp EEEEETCTTSHHHHHHHHHS--EEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCS-SCTTCEEEEEEESCGG
T ss_pred EEEEECCCCCHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCC-CCcccccEEEECchHh
Confidence 89999999999999999872 24899999999999988887 33 233332122222 44 8999999999999
Q ss_pred cCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 544 LYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 544 ~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
+.. +...+|.|+.|+|||||.+++.+
T Consensus 123 ~~~---~~~~~l~~~~~~L~pgG~l~~~~ 148 (219)
T 3dlc_A 123 FWE---DVATAFREIYRILKSGGKTYIGG 148 (219)
T ss_dssp GCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcc---CHHHHHHHHHHhCCCCCEEEEEe
Confidence 885 56899999999999999999975
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=8.6e-11 Score=114.00 Aligned_cols=97 Identities=18% Similarity=0.228 Sum_probs=78.7
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc--cceeccccccCCC-CC-CccceeeeccccccC
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL--VGTYTNWCEAMST-YP-RTYDLIHADSVFSLY 545 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl--i~~~~~~~e~~~~-yp-~t~Dlih~~~~f~~~ 545 (626)
-.+|||+|||.|.++..|++.+. +|+.+|.++.+++.+.++|+ +...+ ..+.. +| .+||+|.+..++.+.
T Consensus 47 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~---~d~~~~~~~~~~D~v~~~~~l~~~ 120 (218)
T 3ou2_A 47 RGDVLELASGTGYWTRHLSGLAD---RVTALDGSAEMIAEAGRHGLDNVEFRQ---QDLFDWTPDRQWDAVFFAHWLAHV 120 (218)
T ss_dssp CSEEEEESCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHGGGCCTTEEEEE---CCTTSCCCSSCEEEEEEESCGGGS
T ss_pred CCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHhcCCCCeEEEe---cccccCCCCCceeEEEEechhhcC
Confidence 34899999999999999998865 88999999999999999775 22333 22222 44 999999999999988
Q ss_pred CCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 546 KDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 546 ~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
.+ -.+..+|.++.|+|||||.+++.+.
T Consensus 121 ~~-~~~~~~l~~~~~~L~pgG~l~~~~~ 147 (218)
T 3ou2_A 121 PD-DRFEAFWESVRSAVAPGGVVEFVDV 147 (218)
T ss_dssp CH-HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CH-HHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 74 2357899999999999999999853
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.1e-10 Score=111.47 Aligned_cols=120 Identities=18% Similarity=0.109 Sum_probs=92.5
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceeccccccCCCCCCccceeeeccccccCCCCC
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYPRTYDLIHADSVFSLYKDRC 549 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~yp~t~Dlih~~~~f~~~~~~c 549 (626)
-.+|||+|||.|.++..|++.+. +|+.+|.++.+++.+.++--+.....-.+.+. .+.+||+|.+..++.+... -
T Consensus 44 ~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~-~ 118 (211)
T 3e23_A 44 GAKILELGCGAGYQAEAMLAAGF---DVDATDGSPELAAEASRRLGRPVRTMLFHQLD-AIDAYDAVWAHACLLHVPR-D 118 (211)
T ss_dssp TCEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHTSCCEECCGGGCC-CCSCEEEEEECSCGGGSCH-H
T ss_pred CCcEEEECCCCCHHHHHHHHcCC---eEEEECCCHHHHHHHHHhcCCceEEeeeccCC-CCCcEEEEEecCchhhcCH-H
Confidence 45799999999999999999876 78999999999999998832222221122233 3499999999999988762 2
Q ss_pred CHHHHHHHhhhhccCCcEEEEEcCh---------------HHHHHHHHHHHhCC-CeeEEe
Q 006905 550 ETEDILLEMDRILRPEGGVIFRDDV---------------DELVKVKRIIDALK-WQSQIV 594 (626)
Q Consensus 550 ~~~~~l~E~dRiLRPgG~~i~~d~~---------------~~~~~~~~~~~~l~-w~~~~~ 594 (626)
++..+|.|+.|+|||||++++.... -....++++++.-. ++....
T Consensus 119 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~ 179 (211)
T 3e23_A 119 ELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAV 179 (211)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEE
Confidence 5578999999999999999997321 14678888888888 887643
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-09 Score=107.89 Aligned_cols=121 Identities=16% Similarity=0.106 Sum_probs=93.7
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc----cceeccccccCCCCC--Cccceeeecccccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL----VGTYTNWCEAMSTYP--RTYDLIHADSVFSL 544 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl----i~~~~~~~e~~~~yp--~t~Dlih~~~~f~~ 544 (626)
.+|||+|||.|.++..|++.+. +|+.+|.++.+++.+.++.- ...+.-.+..+..+| .+||+|.+..+|.+
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~ 144 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPER---FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA 144 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTTE---EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred CCEEEeCCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence 4899999999999999999875 79999999999999888752 111222233444443 79999999999988
Q ss_pred CCCCCCHHHHHHHhhhhccCCcEEEEEcCh-----------HHHHHHHHHHHhCCCeeEEee
Q 006905 545 YKDRCETEDILLEMDRILRPEGGVIFRDDV-----------DELVKVKRIIDALKWQSQIVD 595 (626)
Q Consensus 545 ~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~-----------~~~~~~~~~~~~l~w~~~~~~ 595 (626)
... .+...+|.++.|+|||||++++.+-. -....++++++.-.|+...+.
T Consensus 145 ~~~-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 205 (235)
T 3lcc_A 145 IEP-EMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVE 205 (235)
T ss_dssp SCG-GGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEE
T ss_pred CCH-HHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEE
Confidence 763 46789999999999999999986421 136788899999899876543
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.8e-10 Score=124.32 Aligned_cols=123 Identities=11% Similarity=-0.026 Sum_probs=90.2
Q ss_pred CCCCCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHH------HHHcC
Q 006905 187 GTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQF------ALERG 256 (626)
Q Consensus 187 gt~F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~------A~erg 256 (626)
...|++.....+..+.+.+.+.. +.+|||||||+|.++..++.. .++++|+++..+..+..+. +...|
T Consensus 151 ~~vYGEt~~~~i~~il~~l~l~~--gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~G 228 (438)
T 3uwp_A 151 PEVYGETSFDLVAQMIDEIKMTD--DDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYG 228 (438)
T ss_dssp GGGGGGTHHHHHHHHHHHHCCCT--TCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcccCCCCHHHHHHHHHhcCCCC--CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 34566667777777777776554 458999999999999888753 3899999875544333221 22334
Q ss_pred C---CeEEEEcccccCCCCC--CCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 257 V---PALIGVLAAERLPYPS--RAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 257 ~---~~~~~v~d~~~Lpf~d--~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+ .+.+..+|+..+|+.+ ..||+|+++..+ + ..+....|.++.|+|||||.|++..
T Consensus 229 l~~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~-F-~pdl~~aL~Ei~RvLKPGGrIVssE 288 (438)
T 3uwp_A 229 KKHAEYTLERGDFLSEEWRERIANTSVIFVNNFA-F-GPEVDHQLKERFANMKEGGRIVSSK 288 (438)
T ss_dssp BCCCEEEEEECCTTSHHHHHHHHTCSEEEECCTT-C-CHHHHHHHHHHHTTSCTTCEEEESS
T ss_pred CCCCCeEEEECcccCCccccccCCccEEEEcccc-c-CchHHHHHHHHHHcCCCCcEEEEee
Confidence 3 4778888988888754 479999998765 3 3455788999999999999999864
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.07 E-value=2.1e-10 Score=115.25 Aligned_cols=98 Identities=19% Similarity=0.271 Sum_probs=77.9
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceeccccccCCCCC-Cccceeeecc
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYTNWCEAMSTYP-RTYDLIHADS 540 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~~~~e~~~~yp-~t~Dlih~~~ 540 (626)
..-.+|||+|||.|.++..|++..- +|+.+|.++.+++.+.++ |+ +.....-.+.+ ++| ++||+|++..
T Consensus 36 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l-~~~~~~fD~V~~~~ 111 (260)
T 1vl5_A 36 KGNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQM-PFTDERFHIVTCRI 111 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CC-CSCTTCEEEEEEES
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhC-CCCCCCEEEEEEhh
Confidence 3466899999999999999998854 899999999999988776 33 23333111222 245 8999999999
Q ss_pred ccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 541 VFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 541 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
++.+.. +.+.+|.|+.|+|||||++++.+
T Consensus 112 ~l~~~~---d~~~~l~~~~r~LkpgG~l~~~~ 140 (260)
T 1vl5_A 112 AAHHFP---NPASFVSEAYRVLKKGGQLLLVD 140 (260)
T ss_dssp CGGGCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhHhcC---CHHHHHHHHHHHcCCCCEEEEEE
Confidence 998886 56899999999999999999974
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=6.7e-10 Score=117.76 Aligned_cols=99 Identities=14% Similarity=0.153 Sum_probs=78.0
Q ss_pred CCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEcccccCCCCCCCeeEEEeccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAERLPYPSRAFDMAHCSRCLI 286 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~Lpf~d~sFDlV~~~~~l~ 286 (626)
+.+|||||||+|.++..++++ .|+++|+++ ++.. +.+.+...+.. +.+..++...+++++++||+|++....+
T Consensus 67 ~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~-a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~ 144 (349)
T 3q7e_A 67 DKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDY-AVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 144 (349)
T ss_dssp TCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHH-HHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred CCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHH-HHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccccc
Confidence 458999999999999999987 688999984 4443 33445555654 7888899999999989999999966432
Q ss_pred --cccccHHHHHHHHHhcccCCeEEEEE
Q 006905 287 --PWNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 287 --h~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
+.......++.++.|+|||||+++..
T Consensus 145 ~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 145 CLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred cccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 33345588999999999999999853
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.4e-10 Score=115.93 Aligned_cols=99 Identities=16% Similarity=0.241 Sum_probs=79.4
Q ss_pred CCceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhcc----cceec-cccccCCCCC-Cccceeeecc
Q 006905 468 GRYRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERGL----VGTYT-NWCEAMSTYP-RTYDLIHADS 540 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rgl----i~~~~-~~~e~~~~yp-~t~Dlih~~~ 540 (626)
..-.+|||+|||.|.++..|++. +. +|+.+|.++.+++.+.++.- +...+ |.. .+ ++| ++||+|++..
T Consensus 54 ~~~~~vLdiG~G~G~~~~~l~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~-~~-~~~~~~fD~v~~~~ 128 (266)
T 3ujc_A 54 NENSKVLDIGSGLGGGCMYINEKYGA---HTHGIDICSNIVNMANERVSGNNKIIFEANDIL-TK-EFPENNFDLIYSRD 128 (266)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHTCCSCTTEEEEECCTT-TC-CCCTTCEEEEEEES
T ss_pred CCCCEEEEECCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHhhcCCCeEEEECccc-cC-CCCCCcEEEEeHHH
Confidence 34568999999999999999987 54 89999999999999998863 33333 222 22 344 8999999999
Q ss_pred ccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 541 VFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 541 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
++.+... -+...+|.|+.|+|||||.+++.+
T Consensus 129 ~l~~~~~-~~~~~~l~~~~~~L~pgG~l~~~~ 159 (266)
T 3ujc_A 129 AILALSL-ENKNKLFQKCYKWLKPTGTLLITD 159 (266)
T ss_dssp CGGGSCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHhcCh-HHHHHHHHHHHHHcCCCCEEEEEE
Confidence 9998832 256889999999999999999986
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.06 E-value=5.8e-10 Score=105.65 Aligned_cols=133 Identities=14% Similarity=0.010 Sum_probs=88.8
Q ss_pred CCceecCCCCCCCCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHH
Q 006905 178 GDRFRFPGGGTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALE 254 (626)
Q Consensus 178 ge~~~Fp~ggt~F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~e 254 (626)
+..+..+.+. ......+.+.+.+.+.+... ..+.+|||+|||+|.++..++++ .++++|+++..+..+..+. ..
T Consensus 13 ~~~~~~~~~~-~~rp~~~~~~~~~~~~l~~~-~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~-~~ 89 (187)
T 2fhp_A 13 GRRLKALDGD-NTRPTTDKVKESIFNMIGPY-FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENI-AI 89 (187)
T ss_dssp TCBCCCCCCC-SSCCCCHHHHHHHHHHHCSC-CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHH-HH
T ss_pred CccccCCCCC-CcCcCHHHHHHHHHHHHHhh-cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHH-HH
Confidence 3455555443 34445566767777766421 23458999999999999988765 5889998876555444333 33
Q ss_pred cCC--CeEEEEcccccC----CCCCCCeeEEEeccccccccccHHHHHHHH--HhcccCCeEEEEEeCC
Q 006905 255 RGV--PALIGVLAAERL----PYPSRAFDMAHCSRCLIPWNQFGGIYLIEV--DRVLRPGGYWILSGPP 315 (626)
Q Consensus 255 rg~--~~~~~v~d~~~L----pf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei--~RvLKPGG~lvis~pp 315 (626)
.++ .+.+...|.... ++.+++||+|+++..++ . ......+..+ .++|+|||.+++..+.
T Consensus 90 ~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~-~-~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 156 (187)
T 2fhp_A 90 TKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYA-K-QEIVSQLEKMLERQLLTNEAVIVCETDK 156 (187)
T ss_dssp HTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGG-G-CCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred hCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCC-c-hhHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 343 367777775442 23367899999988752 2 2346677777 9999999999998653
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.06 E-value=5e-10 Score=109.13 Aligned_cols=134 Identities=17% Similarity=0.124 Sum_probs=99.2
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc----c--cceeccccccCCC--CC-Cccceeeecc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG----L--VGTYTNWCEAMST--YP-RTYDLIHADS 540 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg----l--i~~~~~~~e~~~~--yp-~t~Dlih~~~ 540 (626)
-.+|||+|||.|.++..|++..--..+|+.+|.++.+++.+.++. + +.+.. ..+.. ++ .+||+|.+..
T Consensus 38 ~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~---~d~~~~~~~~~~fD~v~~~~ 114 (219)
T 3dh0_A 38 GMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLK---SEENKIPLPDNTVDFIFMAF 114 (219)
T ss_dssp TCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEE---CBTTBCSSCSSCEEEEEEES
T ss_pred CCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEe---cccccCCCCCCCeeEEEeeh
Confidence 568999999999999999876300117899999989999887763 2 23333 22222 44 8899999999
Q ss_pred ccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh-------------HHHHHHHHHHHhCCCeeEEeecCCCCCCcceEE
Q 006905 541 VFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV-------------DELVKVKRIIDALKWQSQIVDHEDGPLEREKLL 607 (626)
Q Consensus 541 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~-------------~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l 607 (626)
++.+.. +...+|.|+.|+|||||.+++.+.. -....+.++++...++......-. ....++
T Consensus 115 ~l~~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~---~~~~~~ 188 (219)
T 3dh0_A 115 TFHELS---EPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEVG---KYCFGV 188 (219)
T ss_dssp CGGGCS---SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEET---TTEEEE
T ss_pred hhhhcC---CHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEeeC---CceEEE
Confidence 999886 5689999999999999999998521 126788899999999866432221 246778
Q ss_pred EEEec
Q 006905 608 FAVKL 612 (626)
Q Consensus 608 ~~~K~ 612 (626)
+++|+
T Consensus 189 ~~~k~ 193 (219)
T 3dh0_A 189 YAMIV 193 (219)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 88875
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.4e-09 Score=106.32 Aligned_cols=106 Identities=11% Similarity=-0.103 Sum_probs=75.9
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEcccccCCCCCCC
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAERLPYPSRA 275 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~Lpf~d~s 275 (626)
.+.+.+.... +.+|||+|||+|.++..++++ .|+++|+++.++..+. +.+...+++ +.+..+|..........
T Consensus 46 ~~l~~l~~~~--~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~-~~~~~~g~~~~v~~~~~d~~~~~~~~~~ 122 (204)
T 3njr_A 46 LTLAALAPRR--GELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQ-KNIDTYGLSPRMRAVQGTAPAALADLPL 122 (204)
T ss_dssp HHHHHHCCCT--TCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEESCTTGGGTTSCC
T ss_pred HHHHhcCCCC--CCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHH-HHHHHcCCCCCEEEEeCchhhhcccCCC
Confidence 3444444433 458999999999999999886 6788888775554333 233344554 77777786663223357
Q ss_pred eeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 276 FDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 276 FDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
||+|++...+ +.. ++.++.++|||||.+++...
T Consensus 123 ~D~v~~~~~~-----~~~-~l~~~~~~LkpgG~lv~~~~ 155 (204)
T 3njr_A 123 PEAVFIGGGG-----SQA-LYDRLWEWLAPGTRIVANAV 155 (204)
T ss_dssp CSEEEECSCC-----CHH-HHHHHHHHSCTTCEEEEEEC
T ss_pred CCEEEECCcc-----cHH-HHHHHHHhcCCCcEEEEEec
Confidence 9999987744 345 99999999999999999864
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.2e-09 Score=110.45 Aligned_cols=122 Identities=17% Similarity=0.115 Sum_probs=82.9
Q ss_pred CCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEc
Q 006905 190 FPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVP--ALIGVL 264 (626)
Q Consensus 190 F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~--~~~~v~ 264 (626)
|..+.+.. .+..++... .++.+|||+|||+|.++..++++ .++++|+++..+..+..+ +...+.. +.+...
T Consensus 31 ~~~~~d~~--ll~~~~~~~-~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n-~~~~~~~~~v~~~~~ 106 (259)
T 3lpm_A 31 FSFSIDAV--LLAKFSYLP-IRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRS-VAYNQLEDQIEIIEY 106 (259)
T ss_dssp BCCCHHHH--HHHHHCCCC-SSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHH-HHHTTCTTTEEEECS
T ss_pred ccCcHHHH--HHHHHhcCC-CCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHH-HHHCCCcccEEEEEC
Confidence 44455544 345555433 03458999999999999999886 578888877555443333 3334543 677778
Q ss_pred ccccCC--CCCCCeeEEEeccccccc----c---------------ccHHHHHHHHHhcccCCeEEEEEeCC
Q 006905 265 AAERLP--YPSRAFDMAHCSRCLIPW----N---------------QFGGIYLIEVDRVLRPGGYWILSGPP 315 (626)
Q Consensus 265 d~~~Lp--f~d~sFDlV~~~~~l~h~----~---------------~~~~~~L~Ei~RvLKPGG~lvis~pp 315 (626)
|...++ +++++||+|+++..+.+. . .....++.++.++|||||.|++..++
T Consensus 107 D~~~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 178 (259)
T 3lpm_A 107 DLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP 178 (259)
T ss_dssp CGGGGGGTSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred cHHHhhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH
Confidence 876665 567899999998655322 0 11256899999999999999997653
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=1e-09 Score=106.96 Aligned_cols=149 Identities=14% Similarity=0.098 Sum_probs=101.6
Q ss_pred hhchhhhHHHHHHHHHHHH------------hhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHH
Q 006905 441 EIFQQNSELWKKRLSYYKT------------MNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLG 508 (626)
Q Consensus 441 ~~f~~d~~~w~~~v~~y~~------------~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~ 508 (626)
+.|..+...|......|.. ++..+.....-.+|||+|||.|.++..|.. +|+.+|.++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~------~v~~~D~s~~--- 97 (215)
T 2zfu_A 27 RLFQEDPEAFLLYHRGFQSQVKKWPLQPVDRIARDLRQRPASLVVADFGCGDCRLASSIRN------PVHCFDLASL--- 97 (215)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHTSCTTSCEEEETCTTCHHHHHCCS------CEEEEESSCS---
T ss_pred HHHHHhHHHHHHHHHHHHhhhcccchhHHHHHHHHHhccCCCCeEEEECCcCCHHHHHhhc------cEEEEeCCCC---
Confidence 4566677777765555543 222222112346799999999999999852 4667777744
Q ss_pred HHHHhcccceeccccccCCCCC-CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcChH---HHHHHHHHH
Q 006905 509 VIYERGLVGTYTNWCEAMSTYP-RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDVD---ELVKVKRII 584 (626)
Q Consensus 509 ~~~~rgli~~~~~~~e~~~~yp-~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~~---~~~~~~~~~ 584 (626)
. +.+...-.+.+ ++| ++||+|.+..++. . -+...+|.|+.|+|||||.+++.+... ....+..++
T Consensus 98 -----~-~~~~~~d~~~~-~~~~~~fD~v~~~~~l~-~---~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l 166 (215)
T 2zfu_A 98 -----D-PRVTVCDMAQV-PLEDESVDVAVFCLSLM-G---TNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAV 166 (215)
T ss_dssp -----S-TTEEESCTTSC-SCCTTCEEEEEEESCCC-S---SCHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHH
T ss_pred -----C-ceEEEeccccC-CCCCCCEeEEEEehhcc-c---cCHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHH
Confidence 1 22222112222 244 8999999998885 2 367899999999999999999987654 467888889
Q ss_pred HhCCCeeEEeecCCCCCCcceEEEEEec
Q 006905 585 DALKWQSQIVDHEDGPLEREKLLFAVKL 612 (626)
Q Consensus 585 ~~l~w~~~~~~~e~~~~~~e~~l~~~K~ 612 (626)
+...++....+...+ .-.+++++|.
T Consensus 167 ~~~Gf~~~~~~~~~~---~~~~~~~~k~ 191 (215)
T 2zfu_A 167 TKLGFKIVSKDLTNS---HFFLFDFQKT 191 (215)
T ss_dssp HHTTEEEEEEECCST---TCEEEEEEEC
T ss_pred HHCCCEEEEEecCCC---eEEEEEEEec
Confidence 988888765544322 3478888886
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.05 E-value=4.9e-08 Score=104.61 Aligned_cols=112 Identities=15% Similarity=0.133 Sum_probs=77.3
Q ss_pred eeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHHHh----ccc---ceeccccccCCCCC-Cccceeeecc
Q 006905 471 RNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIYER----GLV---GTYTNWCEAMSTYP-RTYDLIHADS 540 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~~r----gli---~~~~~~~e~~~~yp-~t~Dlih~~~ 540 (626)
.+|||+|||+|.++..|++. +. .|+.+|.++.+++.+.++ |+- .+--.+...+..+| .+||+|.++.
T Consensus 224 ~~VLDlGcG~G~~s~~la~~~p~~---~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~~fD~Ii~np 300 (375)
T 4dcm_A 224 GEIVDLGCGNGVIGLTLLDKNPQA---KVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNP 300 (375)
T ss_dssp SEEEEETCTTCHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTTCEEEEEECC
T ss_pred CeEEEEeCcchHHHHHHHHHCCCC---EEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCCCeeEEEECC
Confidence 68999999999999999887 34 789999998899877664 321 12001223334456 7999999998
Q ss_pred ccccCC--CCCCHHHHHHHhhhhccCCcEEEEEcCh--HHHHHHHHHHH
Q 006905 541 VFSLYK--DRCETEDILLEMDRILRPEGGVIFRDDV--DELVKVKRIID 585 (626)
Q Consensus 541 ~f~~~~--~~c~~~~~l~E~dRiLRPgG~~i~~d~~--~~~~~~~~~~~ 585 (626)
.|.... .+-....+|.++.|+|||||.+++.... .....++++..
T Consensus 301 pfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~~~~l~~~fg 349 (375)
T 4dcm_A 301 PFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG 349 (375)
T ss_dssp CC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred CcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCcCHHHHHHHhcC
Confidence 887532 2223346899999999999999996433 34455555544
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=3e-10 Score=117.79 Aligned_cols=101 Identities=13% Similarity=0.132 Sum_probs=80.6
Q ss_pred CceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHh----cccceeccccccCCCCCCccceeeeccccc
Q 006905 469 RYRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYER----GLVGTYTNWCEAMSTYPRTYDLIHADSVFS 543 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~r----gli~~~~~~~e~~~~yp~t~Dlih~~~~f~ 543 (626)
.-.+|||+|||.|.++..|++. +. +|+.+|.++.+++.+.++ |+...+.-.+..+..+|.+||+|.+..+|.
T Consensus 90 ~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD~v~~~~~l~ 166 (318)
T 2fk8_A 90 PGMTLLDIGCGWGTTMRRAVERFDV---NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFE 166 (318)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEEEESCGG
T ss_pred CcCEEEEEcccchHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCcCEEEEeChHH
Confidence 3458999999999999999887 65 899999999999998887 432211212344555679999999999999
Q ss_pred cCCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 544 LYKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 544 ~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
+... -+...+|.|+.|+|||||.+++.+.
T Consensus 167 ~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 195 (318)
T 2fk8_A 167 HFGH-ENYDDFFKRCFNIMPADGRMTVQSS 195 (318)
T ss_dssp GTCG-GGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred hcCH-HHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 8753 3678999999999999999999753
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.04 E-value=4.8e-10 Score=110.39 Aligned_cols=116 Identities=14% Similarity=0.085 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-cceeccccccCC
Q 006905 449 LWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-VGTYTNWCEAMS 527 (626)
Q Consensus 449 ~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-i~~~~~~~e~~~ 527 (626)
.|......+..++..... .-.+|||+|||.|.++..|++.+. +|+.+|.++.+++.+.++.- +...+ ..+.
T Consensus 22 ~~~~~~~~~~~~l~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~---~d~~ 93 (239)
T 3bxo_A 22 DYAAEASDIADLVRSRTP--EASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRLPDATLHQ---GDMR 93 (239)
T ss_dssp CHHHHHHHHHHHHHHHCT--TCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHCTTCEEEE---CCTT
T ss_pred hHHHHHHHHHHHHHHhcC--CCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhCCCCEEEE---CCHH
Confidence 455555555555443222 246899999999999999998754 78999999999999988742 23333 2333
Q ss_pred CC--CCccceeee-ccccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 528 TY--PRTYDLIHA-DSVFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 528 ~y--p~t~Dlih~-~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
.+ +.+||+|.| ..+|.+..+.-+...+|.++.|+|||||.+++.+
T Consensus 94 ~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (239)
T 3bxo_A 94 DFRLGRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEP 141 (239)
T ss_dssp TCCCSSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred HcccCCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 33 589999995 4488877654466789999999999999999973
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-09 Score=115.62 Aligned_cols=112 Identities=13% Similarity=0.131 Sum_probs=81.8
Q ss_pred HHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCC
Q 006905 196 AYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLP 270 (626)
Q Consensus 196 ~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lp 270 (626)
.|.+.|.+.+.... +.+|||||||+|.++..+++. .++++|+++ ++..+ .+.+...+. .+.+..+|...++
T Consensus 51 ~~~~~i~~~~~~~~--~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a-~~~~~~~~~~~~i~~~~~d~~~~~ 126 (340)
T 2fyt_A 51 SYRDFIYQNPHIFK--DKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQA-MDIIRLNKLEDTITLIKGKIEEVH 126 (340)
T ss_dssp HHHHHHHHCGGGTT--TCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHH-HHHHHHTTCTTTEEEEESCTTTSC
T ss_pred HHHHHHHhhhhhcC--CCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHH-HHHHHHcCCCCcEEEEEeeHHHhc
Confidence 34455555554433 458999999999999999886 588999985 55433 334444554 4778888888889
Q ss_pred CCCCCeeEEEeccccc--cccccHHHHHHHHHhcccCCeEEEE
Q 006905 271 YPSRAFDMAHCSRCLI--PWNQFGGIYLIEVDRVLRPGGYWIL 311 (626)
Q Consensus 271 f~d~sFDlV~~~~~l~--h~~~~~~~~L~Ei~RvLKPGG~lvi 311 (626)
+++++||+|++..... +.......++.++.|+|||||.++.
T Consensus 127 ~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 169 (340)
T 2fyt_A 127 LPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 169 (340)
T ss_dssp CSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred CCCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEEc
Confidence 8888999999976321 2233457899999999999999984
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.04 E-value=2.7e-10 Score=111.17 Aligned_cols=121 Identities=10% Similarity=0.078 Sum_probs=87.7
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhccc---------------ceeccccccCCCCC----
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLV---------------GTYTNWCEAMSTYP---- 530 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli---------------~~~~~~~e~~~~yp---- 530 (626)
-.+|||+|||.|.++.+|++++. +|+++|.++.|++.+.++.-. ..+.-.+.++..+|
T Consensus 23 ~~~vLD~GCG~G~~~~~la~~g~---~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 99 (203)
T 1pjz_A 23 GARVLVPLCGKSQDMSWLSGQGY---HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI 99 (203)
T ss_dssp TCEEEETTTCCSHHHHHHHHHCC---EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred CCEEEEeCCCCcHhHHHHHHCCC---eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccC
Confidence 45799999999999999999875 899999999999999987310 11112245555555
Q ss_pred CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcE-EEEE-cCh----------HHHHHHHHHHHhCCCeeEEee
Q 006905 531 RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGG-VIFR-DDV----------DELVKVKRIIDALKWQSQIVD 595 (626)
Q Consensus 531 ~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~-~i~~-d~~----------~~~~~~~~~~~~l~w~~~~~~ 595 (626)
.+||+|.+..+|.+... .+...++.||.|+|||||+ +++. +-. -..+.+++++.. .|++....
T Consensus 100 ~~fD~v~~~~~l~~l~~-~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~~~~ 174 (203)
T 1pjz_A 100 GHCAAFYDRAAMIALPA-DMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVTKVG 174 (203)
T ss_dssp HSEEEEEEESCGGGSCH-HHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEEEEE
T ss_pred CCEEEEEECcchhhCCH-HHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEEEec
Confidence 58999999888887653 3456799999999999998 3332 211 024567777766 67765443
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.04 E-value=2.7e-10 Score=113.77 Aligned_cols=97 Identities=12% Similarity=0.058 Sum_probs=76.1
Q ss_pred ceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHh----cc---cceeccccccCCCCCCccceeeeccc
Q 006905 470 YRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYER----GL---VGTYTNWCEAMSTYPRTYDLIHADSV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~~~~e~~~~yp~t~Dlih~~~~ 541 (626)
-.+|||+|||.|.++..|++. +. +|+.+|.++.+++.+.++ |+ +.+.+.-.+.+.. +.+||+|+|..+
T Consensus 37 ~~~VLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~V~~~~~ 112 (256)
T 1nkv_A 37 GTRILDLGSGSGEMLCTWARDHGI---TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-NEKCDVAACVGA 112 (256)
T ss_dssp TCEEEEETCTTCHHHHHHHHHTCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-SSCEEEEEEESC
T ss_pred CCEEEEECCCCCHHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-CCCCCEEEECCC
Confidence 468999999999999999875 44 789999999999988765 43 3333321122222 589999999999
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
+.+.. +...+|.|+.|+|||||++++.+.
T Consensus 113 ~~~~~---~~~~~l~~~~r~LkpgG~l~~~~~ 141 (256)
T 1nkv_A 113 TWIAG---GFAGAEELLAQSLKPGGIMLIGEP 141 (256)
T ss_dssp GGGTS---SSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred hHhcC---CHHHHHHHHHHHcCCCeEEEEecC
Confidence 88776 458999999999999999999863
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.04 E-value=1.5e-09 Score=108.37 Aligned_cols=160 Identities=14% Similarity=0.085 Sum_probs=105.2
Q ss_pred hhHHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhh--CCCeEEEEeccCccCcccHHHHHHh----cc--cc
Q 006905 446 NSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALI--DFPVWVMNVVPAEAKINTLGVIYER----GL--VG 517 (626)
Q Consensus 446 d~~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~--~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~ 517 (626)
....|.+++-....++..+.- ..-.+|||+|||.|.++..|+ ..+. .|+.+|.++.++.++.++ |+ +.
T Consensus 48 ~~~~~~~~~~d~l~~~~~~~~-~~~~~vLDiG~G~G~~~~~la~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~ 123 (240)
T 1xdz_A 48 KKEVYLKHFYDSITAAFYVDF-NQVNTICDVGAGAGFPSLPIKICFPHL---HVTIVDSLNKRITFLEKLSEALQLENTT 123 (240)
T ss_dssp HHHHHHHTHHHHHGGGGTSCG-GGCCEEEEECSSSCTTHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHTCSSEE
T ss_pred HHHHHHHHHHHHHhHHHhccc-CCCCEEEEecCCCCHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCEE
Confidence 345666665543333322221 224589999999999999988 4444 789999998899887764 44 44
Q ss_pred eeccccccCCC---CCCccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC---hHHHHHHHHHHHhCCCee
Q 006905 518 TYTNWCEAMST---YPRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDD---VDELVKVKRIIDALKWQS 591 (626)
Q Consensus 518 ~~~~~~e~~~~---yp~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~---~~~~~~~~~~~~~l~w~~ 591 (626)
+++.-.+.+.. .+.+||+|.|..+ .++..++.++.|+|||||.+++.+. .+.+..+.+.++...+..
T Consensus 124 ~~~~d~~~~~~~~~~~~~fD~V~~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~ 196 (240)
T 1xdz_A 124 FCHDRAETFGQRKDVRESYDIVTARAV-------ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGEL 196 (240)
T ss_dssp EEESCHHHHTTCTTTTTCEEEEEEECC-------SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEE
T ss_pred EEeccHHHhcccccccCCccEEEEecc-------CCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeE
Confidence 55432333332 2479999999652 4678999999999999999999764 345666777778888876
Q ss_pred EEeec--CCCCCCcceEEEEEecccCC
Q 006905 592 QIVDH--EDGPLEREKLLFAVKLYWTA 616 (626)
Q Consensus 592 ~~~~~--e~~~~~~e~~l~~~K~~w~~ 616 (626)
..... -......-.+++++|.=.++
T Consensus 197 ~~~~~~~~~~~~~~~~l~~~~k~~~~~ 223 (240)
T 1xdz_A 197 ENIHSFKLPIEESDRNIMVIRKIKNTP 223 (240)
T ss_dssp EEEEEEECTTTCCEEEEEEEEECSCCC
T ss_pred eEEEEEecCCCCCceEEEEEEecCCCC
Confidence 53221 11112345677777764443
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.5e-10 Score=112.86 Aligned_cols=116 Identities=14% Similarity=0.092 Sum_probs=90.5
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc---cceeccccccCCCCC-CccceeeeccccccC
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL---VGTYTNWCEAMSTYP-RTYDLIHADSVFSLY 545 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl---i~~~~~~~e~~~~yp-~t~Dlih~~~~f~~~ 545 (626)
-.+|||+|||.|.++..|++.+. +|+.+|.++.+++.+.+++. +..++.-.+.++ +| .+||+|.+..+|.+.
T Consensus 54 ~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~~ 129 (242)
T 3l8d_A 54 EAEVLDVGCGDGYGTYKLSRTGY---KAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLP-FENEQFEAIMAINSLEWT 129 (242)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCS-SCTTCEEEEEEESCTTSS
T ss_pred CCeEEEEcCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhcccCCceEEEcchhcCC-CCCCCccEEEEcChHhhc
Confidence 34899999999999999999976 78999999999999999853 223332122222 33 899999999999988
Q ss_pred CCCCCHHHHHHHhhhhccCCcEEEEEcCh----------------------HHHHHHHHHHHhCCCeeE
Q 006905 546 KDRCETEDILLEMDRILRPEGGVIFRDDV----------------------DELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 546 ~~~c~~~~~l~E~dRiLRPgG~~i~~d~~----------------------~~~~~~~~~~~~l~w~~~ 592 (626)
. +...+|.++.|+|||||.+++.+.. -....+++++....+++.
T Consensus 130 ~---~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 195 (242)
T 3l8d_A 130 E---EPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVV 195 (242)
T ss_dssp S---CHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEE
T ss_pred c---CHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEE
Confidence 5 5589999999999999999998521 113567888888888765
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.03 E-value=9e-10 Score=109.91 Aligned_cols=96 Identities=8% Similarity=0.035 Sum_probs=73.2
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCCCC---CCCeeEEEecc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLPYP---SRAFDMAHCSR 283 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lpf~---d~sFDlV~~~~ 283 (626)
+.+|||||||+|.++..|+.. .|+++|+++.++..+.. .+...++ .+.+..+|...++++ +++||+|+|..
T Consensus 71 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~ 149 (240)
T 1xdz_A 71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEK-LSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA 149 (240)
T ss_dssp CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHH-HHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCCEEEEeccHHHhcccccccCCccEEEEec
Confidence 568999999999998888842 68889988765544333 3333454 477778887777764 67899999966
Q ss_pred ccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 284 CLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 284 ~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
. .+...++.++.++|||||+|++..
T Consensus 150 ~-----~~~~~~l~~~~~~LkpgG~l~~~~ 174 (240)
T 1xdz_A 150 V-----ARLSVLSELCLPLVKKNGLFVALK 174 (240)
T ss_dssp C-----SCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred c-----CCHHHHHHHHHHhcCCCCEEEEEe
Confidence 2 346889999999999999999873
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=4.5e-10 Score=112.65 Aligned_cols=102 Identities=19% Similarity=0.107 Sum_probs=73.7
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHH-----HcCC-CeEEEEccccc-CC--CCCCCeeE
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFAL-----ERGV-PALIGVLAAER-LP--YPSRAFDM 278 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~-----erg~-~~~~~v~d~~~-Lp--f~d~sFDl 278 (626)
..+|||||||+|.++..|++. .++++|+++.++..+..+... ..+. ++.+..+|+.. ++ +++++||.
T Consensus 47 ~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D~ 126 (235)
T 3ckk_A 47 QVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTK 126 (235)
T ss_dssp CEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEEE
T ss_pred CCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCeeE
Confidence 458999999999999999875 588999988666544433221 1233 46778888765 66 78899999
Q ss_pred EEecccccccccc--------HHHHHHHHHhcccCCeEEEEEeC
Q 006905 279 AHCSRCLIPWNQF--------GGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 279 V~~~~~l~h~~~~--------~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
|++...- +|... ...+|.++.|+|||||.|++...
T Consensus 127 v~~~~~d-p~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td 169 (235)
T 3ckk_A 127 MFFLFPD-PHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD 169 (235)
T ss_dssp EEEESCC------------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred EEEeCCC-chhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence 9986543 44321 14799999999999999999753
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.7e-10 Score=124.56 Aligned_cols=144 Identities=13% Similarity=0.135 Sum_probs=109.2
Q ss_pred chhhhHHHHHHHHHHHHh-hhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceec-
Q 006905 443 FQQNSELWKKRLSYYKTM-NNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYT- 520 (626)
Q Consensus 443 f~~d~~~w~~~v~~y~~~-~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~- 520 (626)
+......|..+...+... +..+.. ..-.+|||+|||.|.++..|++.+. +|+.+|.++++++.+.++|+-....
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~VLDiGcG~G~~~~~l~~~g~---~v~gvD~s~~~~~~a~~~~~~~~~~~ 156 (416)
T 4e2x_A 81 HSSGSSVMREHFAMLARDFLATELT-GPDPFIVEIGCNDGIMLRTIQEAGV---RHLGFEPSSGVAAKAREKGIRVRTDF 156 (416)
T ss_dssp CGGGCHHHHHHHHHHHHHHHHTTTC-SSSCEEEEETCTTTTTHHHHHHTTC---EEEEECCCHHHHHHHHTTTCCEECSC
T ss_pred cCcCCHHHHHHHHHHHHHHHHHhCC-CCCCEEEEecCCCCHHHHHHHHcCC---cEEEECCCHHHHHHHHHcCCCcceee
Confidence 344557788887776654 333443 4456899999999999999999876 8999999999999999997633221
Q ss_pred ---cccccCCCCC-CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh--------------------HH
Q 006905 521 ---NWCEAMSTYP-RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV--------------------DE 576 (626)
Q Consensus 521 ---~~~e~~~~yp-~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~--------------------~~ 576 (626)
+-.+.+ .++ ++||+|.+..+|.|.. +...+|.|+.|+|||||++++.... -.
T Consensus 157 ~~~~~~~~l-~~~~~~fD~I~~~~vl~h~~---d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s 232 (416)
T 4e2x_A 157 FEKATADDV-RRTEGPANVIYAANTLCHIP---YVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFS 232 (416)
T ss_dssp CSHHHHHHH-HHHHCCEEEEEEESCGGGCT---THHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECC
T ss_pred echhhHhhc-ccCCCCEEEEEECChHHhcC---CHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCC
Confidence 111111 133 8999999999999997 6799999999999999999997432 02
Q ss_pred HHHHHHHHHhCCCeeEEe
Q 006905 577 LVKVKRIIDALKWQSQIV 594 (626)
Q Consensus 577 ~~~~~~~~~~l~w~~~~~ 594 (626)
...++.++++-.++..-+
T Consensus 233 ~~~l~~ll~~aGf~~~~~ 250 (416)
T 4e2x_A 233 ATSVQGMAQRCGFELVDV 250 (416)
T ss_dssp HHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHHHcCCEEEEE
Confidence 467888888888876543
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.2e-10 Score=115.56 Aligned_cols=107 Identities=15% Similarity=0.174 Sum_probs=83.9
Q ss_pred HhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc---cceeccccccCCCCC-
Q 006905 459 TMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL---VGTYTNWCEAMSTYP- 530 (626)
Q Consensus 459 ~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~~~~e~~~~yp- 530 (626)
.++..+.. . -.+|||+|||.|.++..|++.+. +|+.+|.++.+++.+.++ |+ +.+++.-.+.+..++
T Consensus 60 ~~l~~~~~-~-~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 134 (285)
T 4htf_A 60 RVLAEMGP-Q-KLRVLDAGGGEGQTAIKMAERGH---QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLE 134 (285)
T ss_dssp HHHHHTCS-S-CCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCS
T ss_pred HHHHhcCC-C-CCEEEEeCCcchHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcC
Confidence 34444444 2 36899999999999999999876 799999999999998886 33 334443233444344
Q ss_pred CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 531 RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 531 ~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
.+||+|.+..++.+.. +...+|.|+.|+|||||.+++.+.
T Consensus 135 ~~fD~v~~~~~l~~~~---~~~~~l~~~~~~LkpgG~l~~~~~ 174 (285)
T 4htf_A 135 TPVDLILFHAVLEWVA---DPRSVLQTLWSVLRPGGVLSLMFY 174 (285)
T ss_dssp SCEEEEEEESCGGGCS---CHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCceEEEECchhhccc---CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 9999999999999886 458999999999999999999763
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-09 Score=113.16 Aligned_cols=97 Identities=11% Similarity=0.029 Sum_probs=72.3
Q ss_pred CCCEEEEeCCCCchHHHHH-hh---CCcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCCCCCCCeeEEEecccc
Q 006905 211 SIRTAIDTGCGVASWGAYL-LS---RNIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~L-a~---~~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lpf~d~sFDlV~~~~~l 285 (626)
++.+|||||||+|.+++.+ ++ ..|+++|+++.++..++...+ +.|. .+.+..+|+..+| +++||+|++...
T Consensus 122 ~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~-~~gl~~v~~v~gDa~~l~--d~~FDvV~~~a~- 197 (298)
T 3fpf_A 122 RGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIE-GLGVDGVNVITGDETVID--GLEFDVLMVAAL- 197 (298)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHH-HHTCCSEEEEESCGGGGG--GCCCSEEEECTT-
T ss_pred CcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHH-hcCCCCeEEEECchhhCC--CCCcCEEEECCC-
Confidence 3569999999999776543 33 268888888866655444333 3344 5778888887775 789999998653
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 286 IPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 286 ~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
..+...++.++.|+|||||.|++...
T Consensus 198 ---~~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 198 ---AEPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp ---CSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred ---ccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 34568999999999999999999753
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=3.1e-10 Score=122.07 Aligned_cols=92 Identities=11% Similarity=0.118 Sum_probs=71.8
Q ss_pred CCEEEEeCCC------CchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCC------CC
Q 006905 212 IRTAIDTGCG------VASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYP------SR 274 (626)
Q Consensus 212 ~~~VLDIGCG------tG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~------d~ 274 (626)
..+||||||| +|..+..++++ .|+++|+++.+. .....+.+.++|...+||. ++
T Consensus 217 ~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~~~rI~fv~GDa~dlpf~~~l~~~d~ 287 (419)
T 3sso_A 217 QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VDELRIRTIQGDQNDAEFLDRIARRYG 287 (419)
T ss_dssp CCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GCBTTEEEEECCTTCHHHHHHHHHHHC
T ss_pred CCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hcCCCcEEEEecccccchhhhhhcccC
Confidence 5689999999 66555555542 699999988652 1334678889999888887 78
Q ss_pred CeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 275 AFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 275 sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+||+|+|..+ |+..+...+|+++.|+|||||+|++...
T Consensus 288 sFDlVisdgs--H~~~d~~~aL~el~rvLKPGGvlVi~Dl 325 (419)
T 3sso_A 288 PFDIVIDDGS--HINAHVRTSFAALFPHVRPGGLYVIEDM 325 (419)
T ss_dssp CEEEEEECSC--CCHHHHHHHHHHHGGGEEEEEEEEEECG
T ss_pred CccEEEECCc--ccchhHHHHHHHHHHhcCCCeEEEEEec
Confidence 9999999754 3344568999999999999999999853
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.03 E-value=1e-09 Score=106.88 Aligned_cols=118 Identities=9% Similarity=-0.021 Sum_probs=81.4
Q ss_pred cHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEccccc
Q 006905 193 GADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAER 268 (626)
Q Consensus 193 ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~ 268 (626)
..+...+.+.+.+... ..+.+|||+|||+|.++..++.+ .|+++|+++.++..+..+ +...++ .+.+...|...
T Consensus 37 ~~~~~~~~l~~~l~~~-~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~-~~~~~~~~v~~~~~D~~~ 114 (202)
T 2fpo_A 37 TTDRVRETLFNWLAPV-IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKN-LATLKAGNARVVNSNAMS 114 (202)
T ss_dssp -CHHHHHHHHHHHHHH-HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHH-HHHTTCCSEEEECSCHHH
T ss_pred CHHHHHHHHHHHHHhh-cCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHH-HHHcCCCcEEEEECCHHH
Confidence 3444555555555431 02458999999999999986665 588899888666544433 334454 56777777655
Q ss_pred -CCCCCCCeeEEEeccccccccccHHHHHHHHHh--cccCCeEEEEEeC
Q 006905 269 -LPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDR--VLRPGGYWILSGP 314 (626)
Q Consensus 269 -Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~R--vLKPGG~lvis~p 314 (626)
++..+++||+|++...+ +. .....++.++.+ +|+|||.++++..
T Consensus 115 ~~~~~~~~fD~V~~~~p~-~~-~~~~~~l~~l~~~~~L~pgG~l~i~~~ 161 (202)
T 2fpo_A 115 FLAQKGTPHNIVFVDPPF-RR-GLLEETINLLEDNGWLADEALIYVESE 161 (202)
T ss_dssp HHSSCCCCEEEEEECCSS-ST-TTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred HHhhcCCCCCEEEECCCC-CC-CcHHHHHHHHHhcCccCCCcEEEEEEC
Confidence 56667899999998765 33 334677888865 6999999999864
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=5.7e-10 Score=103.56 Aligned_cols=91 Identities=16% Similarity=0.155 Sum_probs=71.0
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCC--------CCCCCeeE
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLP--------YPSRAFDM 278 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lp--------f~d~sFDl 278 (626)
+.+|||+|||+|.++..+++. .++++|+++ +... ..+.+...|...++ +++++||+
T Consensus 23 ~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~ 91 (180)
T 1ej0_A 23 GMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------VGVDFLQGDFRDELVMKALLERVGDSKVQV 91 (180)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------TTEEEEESCTTSHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------CcEEEEEcccccchhhhhhhccCCCCceeE
Confidence 458999999999999888764 588889877 4421 34667777877766 67789999
Q ss_pred EEeccccccccccH-----------HHHHHHHHhcccCCeEEEEEeC
Q 006905 279 AHCSRCLIPWNQFG-----------GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 279 V~~~~~l~h~~~~~-----------~~~L~Ei~RvLKPGG~lvis~p 314 (626)
|+++.++++ .... ..++.++.++|||||.+++..+
T Consensus 92 i~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 137 (180)
T 1ej0_A 92 VMSDMAPNM-SGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF 137 (180)
T ss_dssp EEECCCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEECCCccc-cCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 999887743 3322 5889999999999999999764
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.02 E-value=4e-10 Score=112.55 Aligned_cols=107 Identities=14% Similarity=0.161 Sum_probs=82.6
Q ss_pred HhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc---cceeccccccCCCCC-Cccc
Q 006905 459 TMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL---VGTYTNWCEAMSTYP-RTYD 534 (626)
Q Consensus 459 ~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl---i~~~~~~~e~~~~yp-~t~D 534 (626)
.++..+.. ..-.+|||+|||.|.++..|++.+.- +|+.+|.++.+++.+.++.- +.....=.+.+. +| .+||
T Consensus 35 ~l~~~~~~-~~~~~vLD~GcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-~~~~~fD 110 (253)
T 3g5l_A 35 ELKKMLPD-FNQKTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIA-IEPDAYN 110 (253)
T ss_dssp HHHTTCCC-CTTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCC-CCTTCEE
T ss_pred HHHHhhhc-cCCCEEEEECCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCC-CCCCCeE
Confidence 33333443 44678999999999999999988642 78999999999999998853 223321122332 44 8999
Q ss_pred eeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 535 LIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 535 lih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
+|.+..+|.+.. +...+|.++.|+|||||.++++.
T Consensus 111 ~v~~~~~l~~~~---~~~~~l~~~~~~LkpgG~l~~~~ 145 (253)
T 3g5l_A 111 VVLSSLALHYIA---SFDDICKKVYINLKSSGSFIFSV 145 (253)
T ss_dssp EEEEESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEchhhhhhh---hHHHHHHHHHHHcCCCcEEEEEe
Confidence 999999999885 56899999999999999999973
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=4e-09 Score=107.54 Aligned_cols=116 Identities=16% Similarity=0.109 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEccccc
Q 006905 194 ADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAER 268 (626)
Q Consensus 194 a~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~ 268 (626)
....++.+.+.+. ....+|||+|||+|.++..++.. .++++|+++..+..+..+ +...++ .+.+..+|...
T Consensus 95 te~l~~~~l~~~~---~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n-~~~~~~~~v~~~~~d~~~ 170 (276)
T 2b3t_A 95 TECLVEQALARLP---EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRN-AQHLAIKNIHILQSDWFS 170 (276)
T ss_dssp HHHHHHHHHHHSC---SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHH-HHHHTCCSEEEECCSTTG
T ss_pred HHHHHHHHHHhcc---cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCCceEEEEcchhh
Confidence 4445555555553 23458999999999999998853 688888877655544333 333454 36677777544
Q ss_pred CCCCCCCeeEEEeccccccc-------------c-----------ccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 269 LPYPSRAFDMAHCSRCLIPW-------------N-----------QFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 269 Lpf~d~sFDlV~~~~~l~h~-------------~-----------~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++++++||+|+++..++.. + .....++.++.++|||||++++..+
T Consensus 171 -~~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~ 239 (276)
T 2b3t_A 171 -ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG 239 (276)
T ss_dssp -GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred -hcccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 2446789999998544322 1 1236788999999999999999853
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.02 E-value=2.4e-10 Score=113.64 Aligned_cols=123 Identities=19% Similarity=0.171 Sum_probs=92.8
Q ss_pred CceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc------cceeccccccCCCCC-Cccceeeeccc
Q 006905 469 RYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL------VGTYTNWCEAMSTYP-RTYDLIHADSV 541 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl------i~~~~~~~e~~~~yp-~t~Dlih~~~~ 541 (626)
.-.+|||+|||.|.++..|++.. ..+|+.+|.++.+++.+.++.- +..+..-.+.+. ++ .+||+|.+..+
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~ 155 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT-PEPDSYDVIWIQWV 155 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCC-CCSSCEEEEEEESC
T ss_pred CCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcC-CCCCCEEEEEEcch
Confidence 35789999999999999999885 2378999999999999988753 222221112222 23 68999999999
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh---------------HHHHHHHHHHHhCCCeeEEee
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFRDDV---------------DELVKVKRIIDALKWQSQIVD 595 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~---------------~~~~~~~~~~~~l~w~~~~~~ 595 (626)
+.+..+. .+..+|.++.|+|||||++++.+.. .....+++++....++.....
T Consensus 156 l~~~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 223 (241)
T 2ex4_A 156 IGHLTDQ-HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEE 223 (241)
T ss_dssp GGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred hhhCCHH-HHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEee
Confidence 9887642 2468999999999999999997632 136788888888888876543
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.3e-09 Score=111.61 Aligned_cols=113 Identities=17% Similarity=0.135 Sum_probs=79.9
Q ss_pred HHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCCCC
Q 006905 199 DDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLPYP 272 (626)
Q Consensus 199 ~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lpf~ 272 (626)
..+.+.+.....+..+|||||||+|.++..++++ .++++|++ ..+..+..... ..++ .+.+..+|....+++
T Consensus 153 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~ 230 (335)
T 2r3s_A 153 QLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENAR-IQGVASRYHTIAGSAFEVDYG 230 (335)
T ss_dssp HHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHH-HHTCGGGEEEEESCTTTSCCC
T ss_pred HHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHH-hcCCCcceEEEecccccCCCC
Confidence 3444444331123569999999999999999876 47777775 34433332222 2243 377888887777776
Q ss_pred CCCeeEEEeccccccccccH-HHHHHHHHhcccCCeEEEEEeC
Q 006905 273 SRAFDMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 273 d~sFDlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++ ||+|++..++++|.+.. ..+|+++.++|+|||++++..+
T Consensus 231 ~~-~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 272 (335)
T 2r3s_A 231 ND-YDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDF 272 (335)
T ss_dssp SC-EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CC-CcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEee
Confidence 55 99999999998886433 6899999999999999999764
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.2e-09 Score=112.49 Aligned_cols=101 Identities=12% Similarity=0.145 Sum_probs=71.7
Q ss_pred CCEEEEeCCCCch----HHHHHhhC--------CcEEEeCCccchHHHHHHHH--------------H-----H---cC-
Q 006905 212 IRTAIDTGCGVAS----WGAYLLSR--------NIITMSFAPRDTHEAQVQFA--------------L-----E---RG- 256 (626)
Q Consensus 212 ~~~VLDIGCGtG~----~a~~La~~--------~V~avdis~~dls~a~i~~A--------------~-----e---rg- 256 (626)
..+|||+|||+|. ++..|++. .|+++|+++.++..+....- + . .+
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~ 185 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 185 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence 4589999999996 56556543 57888887755544332210 0 0 00
Q ss_pred --------CCeEEEEcccccCCCC-CCCeeEEEeccccccccccH-HHHHHHHHhcccCCeEEEEE
Q 006905 257 --------VPALIGVLAAERLPYP-SRAFDMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 257 --------~~~~~~v~d~~~Lpf~-d~sFDlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis 312 (626)
..+.|...|....|++ .+.||+|+|.++++++.+.. ..++.++.++|+|||+|++.
T Consensus 186 ~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 186 VRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred eeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 1366777787666665 57899999999997775432 78999999999999999985
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.01 E-value=7.9e-10 Score=104.57 Aligned_cols=90 Identities=17% Similarity=0.104 Sum_probs=71.7
Q ss_pred CCCCCCEEEEeCCCCchHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCCC---CCCCeeEEEecc
Q 006905 208 NDGSIRTAIDTGCGVASWGAYLLSRNIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLPY---PSRAFDMAHCSR 283 (626)
Q Consensus 208 ~~~~~~~VLDIGCGtG~~a~~La~~~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lpf---~d~sFDlV~~~~ 283 (626)
.-+++.+|||||||. + . .|+++.+++.|+++.. .+.+.++|...+++ ++++||+|+|+.
T Consensus 9 g~~~g~~vL~~~~g~-----------v---~---vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~ 71 (176)
T 2ld4_A 9 GISAGQFVAVVWDKS-----------S---P---VEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGL 71 (176)
T ss_dssp TCCTTSEEEEEECTT-----------S---C---HHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECC
T ss_pred CCCCCCEEEEecCCc-----------e---e---eeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECC
Confidence 334567999999996 1 1 3778888888877632 46777888888887 889999999999
Q ss_pred ccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 284 CLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 284 ~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+++|...+...+|+++.|+|||||+|++..+
T Consensus 72 ~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 102 (176)
T 2ld4_A 72 VPGSTTLHSAEILAEIARILRPGGCLFLKEP 102 (176)
T ss_dssp STTCCCCCCHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhhcccCHHHHHHHHHHHCCCCEEEEEEcc
Confidence 9976635569999999999999999999754
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.01 E-value=9.6e-10 Score=108.30 Aligned_cols=110 Identities=10% Similarity=-0.003 Sum_probs=76.7
Q ss_pred HHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCC
Q 006905 196 AYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPS 273 (626)
Q Consensus 196 ~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d 273 (626)
.....+.+.+...+ +.+|||||||+|.++..|++. .++++|+++..+..+... ....+ .+.+...|.......+
T Consensus 57 ~~~~~~~~~~~~~~--~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~-~~~~~-~v~~~~~d~~~~~~~~ 132 (231)
T 1vbf_A 57 NLGIFMLDELDLHK--GQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKL-LSYYN-NIKLILGDGTLGYEEE 132 (231)
T ss_dssp HHHHHHHHHTTCCT--TCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHH-HTTCS-SEEEEESCGGGCCGGG
T ss_pred HHHHHHHHhcCCCC--CCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHH-HhhcC-CeEEEECCcccccccC
Confidence 44555666664433 458999999999999999886 578888866433322211 11222 5677777766533346
Q ss_pred CCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 006905 274 RAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPPI 316 (626)
Q Consensus 274 ~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~pp~ 316 (626)
++||+|++..+++|+. .++.++|||||.+++..++.
T Consensus 133 ~~fD~v~~~~~~~~~~-------~~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 133 KPYDRVVVWATAPTLL-------CKPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp CCEEEEEESSBBSSCC-------HHHHHTEEEEEEEEEEECSS
T ss_pred CCccEEEECCcHHHHH-------HHHHHHcCCCcEEEEEEcCC
Confidence 7899999999886654 36899999999999987643
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.01 E-value=3e-09 Score=104.70 Aligned_cols=103 Identities=16% Similarity=0.028 Sum_probs=75.1
Q ss_pred CCCEEEEeCCC-CchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEccccc-CCCCCCCeeEEEecccc
Q 006905 211 SIRTAIDTGCG-VASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAER-LPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 211 ~~~~VLDIGCG-tG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~-Lpf~d~sFDlV~~~~~l 285 (626)
++.+|||+||| +|.++..+++. .++++|+++..+..+.. .+...+..+.+..+|... .++++++||+|+++..+
T Consensus 55 ~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp~ 133 (230)
T 3evz_A 55 GGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARR-NIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPPY 133 (230)
T ss_dssp SSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHH-HHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCCC
T ss_pred CCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHH-HHHHhCCCcEEEeCCchhhhhcccCceeEEEECCCC
Confidence 35689999999 99999988876 68888888765544333 334456677788777543 35667899999998766
Q ss_pred ccccc------------------cHHHHHHHHHhcccCCeEEEEEeC
Q 006905 286 IPWNQ------------------FGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 286 ~h~~~------------------~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++... ....++.++.++|||||++++..+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 180 (230)
T 3evz_A 134 YDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLP 180 (230)
T ss_dssp C---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred cCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 43221 126789999999999999999753
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.01 E-value=9.1e-10 Score=117.08 Aligned_cols=100 Identities=12% Similarity=0.131 Sum_probs=74.8
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccC--CCCCCCeeEEEecc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERL--PYPSRAFDMAHCSR 283 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~L--pf~d~sFDlV~~~~ 283 (626)
..+|||||||+|.++..++++ .++++|+ +..+..+. +.+.+.+. .+.+..+|.... |++ ++||+|++..
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~~ 256 (363)
T 3dp7_A 180 PKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMR-KQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMSQ 256 (363)
T ss_dssp CSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHH-HHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEES
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHH-HHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEec
Confidence 568999999999999999874 4677776 43333222 22222333 477888887664 566 7899999999
Q ss_pred ccccccccH-HHHHHHHHhcccCCeEEEEEeC
Q 006905 284 CLIPWNQFG-GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 284 ~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++|+|.++. ..+|+++.|+|||||.+++...
T Consensus 257 vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (363)
T 3dp7_A 257 FLDCFSEEEVISILTRVAQSIGKDSKVYIMET 288 (363)
T ss_dssp CSTTSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred hhhhCCHHHHHHHHHHHHHhcCCCcEEEEEee
Confidence 998887654 5889999999999999999764
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.01 E-value=7.2e-10 Score=114.60 Aligned_cols=138 Identities=9% Similarity=0.016 Sum_probs=100.1
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-------cceeccccccCCC--CCCccceeeecc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-------VGTYTNWCEAMST--YPRTYDLIHADS 540 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-------i~~~~~~~e~~~~--yp~t~Dlih~~~ 540 (626)
-.+|||+|||.|.++..|+....-..+|+.+|.++.+++.+.++.- +.+++ ..+.. ++.+||+|.+..
T Consensus 119 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~~~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 119 GCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHR---QDAWKLDTREGYDLLTSNG 195 (305)
T ss_dssp TCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEE---CCGGGCCCCSCEEEEECCS
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEE---CchhcCCccCCeEEEEECC
Confidence 4579999999999999995221111378999999999998887643 33333 22333 349999999999
Q ss_pred ccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh---------------------------------------HHHHHHH
Q 006905 541 VFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV---------------------------------------DELVKVK 581 (626)
Q Consensus 541 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~---------------------------------------~~~~~~~ 581 (626)
++.+..+.-....+|.|+.|+|||||++++.+.. .....+.
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTR 275 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHH
Confidence 9998876534445899999999999999998611 1367788
Q ss_pred HHHHhCCCeeEEeecCCCCCCcceEEEEEec
Q 006905 582 RIIDALKWQSQIVDHEDGPLEREKLLFAVKL 612 (626)
Q Consensus 582 ~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K~ 612 (626)
++++.-.++...+... ....-.+++++|+
T Consensus 276 ~~l~~aGF~~v~~~~~--~~~~~~~v~a~Kp 304 (305)
T 3ocj_A 276 AQLEEAGFTDLRFEDD--RARLFPTVIARKP 304 (305)
T ss_dssp HHHHHTTCEEEEEECC--TTSSSCEEEEECC
T ss_pred HHHHHCCCEEEEEEcc--cCceeeEEEEecC
Confidence 8899888987654432 2234567888885
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.5e-09 Score=111.33 Aligned_cols=116 Identities=10% Similarity=0.043 Sum_probs=79.3
Q ss_pred HHHHHHHHhhccCCCCCCEEEEeCCCC---chHHHHHhh----CCcEEEeCCccchHHHHHHHHHHcCCCeEEEEccccc
Q 006905 196 AYIDDIGKLINLNDGSIRTAIDTGCGV---ASWGAYLLS----RNIITMSFAPRDTHEAQVQFALERGVPALIGVLAAER 268 (626)
Q Consensus 196 ~yi~~L~~ll~l~~~~~~~VLDIGCGt---G~~a~~La~----~~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~ 268 (626)
.+++++.+.+... ....+|||||||+ |.++..+.+ ..|+++|+++.++..++.... ....+.+..+|...
T Consensus 63 ~~~~~~~~~l~~~-~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~--~~~~v~~~~~D~~~ 139 (274)
T 2qe6_A 63 KVLVRGVRFLAGE-AGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLA--KDPNTAVFTADVRD 139 (274)
T ss_dssp HHHHHHHHHHHTT-TCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHT--TCTTEEEEECCTTC
T ss_pred HHHHHHHHHHhhc-cCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcC--CCCCeEEEEeeCCC
Confidence 3444444444311 2246899999999 988766654 368889887765554333221 12346777777643
Q ss_pred CC-----------CCCCCeeEEEecccccccccc-HHHHHHHHHhcccCCeEEEEEeC
Q 006905 269 LP-----------YPSRAFDMAHCSRCLIPWNQF-GGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 269 Lp-----------f~d~sFDlV~~~~~l~h~~~~-~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.+ ++..+||+|+++.++||+.+. ...+|+++.++|||||+|+++..
T Consensus 140 ~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~ 197 (274)
T 2qe6_A 140 PEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSL 197 (274)
T ss_dssp HHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred chhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 21 233489999999999777653 58999999999999999999864
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.2e-10 Score=114.13 Aligned_cols=101 Identities=16% Similarity=0.044 Sum_probs=67.5
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccch-HHH--HHHHHHHcCC-CeEEEEcccccCCCC-CCCeeEEEec
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDT-HEA--QVQFALERGV-PALIGVLAAERLPYP-SRAFDMAHCS 282 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dl-s~a--~i~~A~erg~-~~~~~v~d~~~Lpf~-d~sFDlV~~~ 282 (626)
+.+|||||||+|.++..|+++ .|+++|+++..+ ..+ +.+.+.+.+. ++.+..++...+|.. .+.+|.|+++
T Consensus 25 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~~~ 104 (225)
T 3p2e_A 25 DRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSISIL 104 (225)
T ss_dssp SEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEEEE
T ss_pred CCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEEEe
Confidence 558999999999999999853 588999984333 221 0112223454 467888888888632 2456666665
Q ss_pred cccc----cccccHHHHHHHHHhcccCCeEEEEE
Q 006905 283 RCLI----PWNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 283 ~~l~----h~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
+... +...+...+|.++.|+|||||+|++.
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~ 138 (225)
T 3p2e_A 105 FPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFV 138 (225)
T ss_dssp SCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEE
T ss_pred CCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEE
Confidence 4321 11122357899999999999999994
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.00 E-value=4.1e-09 Score=98.89 Aligned_cols=109 Identities=13% Similarity=0.053 Sum_probs=79.2
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCCC
Q 006905 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLPY 271 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lpf 271 (626)
....+.+.+.+.... +.+|||+|||+|.++..+++. .++++|+++..+..+.. .....+. .+.+...|... ++
T Consensus 21 ~~~~~~~~~~~~~~~--~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~~~~~~~d~~~-~~ 96 (183)
T 2yxd_A 21 EEIRAVSIGKLNLNK--DDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQ-NLAKFNIKNCQIIKGRAED-VL 96 (183)
T ss_dssp HHHHHHHHHHHCCCT--TCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHH-HHHHTTCCSEEEEESCHHH-HG
T ss_pred HHHHHHHHHHcCCCC--CCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHH-HHHHcCCCcEEEEECCccc-cc
Confidence 445555666664433 458999999999999999875 68888887755543333 2333444 46677777655 66
Q ss_pred CCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 272 PSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 272 ~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++++||+|+++.+ .+...++.++.++ |||.+++..+
T Consensus 97 ~~~~~D~i~~~~~-----~~~~~~l~~~~~~--~gG~l~~~~~ 132 (183)
T 2yxd_A 97 DKLEFNKAFIGGT-----KNIEKIIEILDKK--KINHIVANTI 132 (183)
T ss_dssp GGCCCSEEEECSC-----SCHHHHHHHHHHT--TCCEEEEEES
T ss_pred cCCCCcEEEECCc-----ccHHHHHHHHhhC--CCCEEEEEec
Confidence 6789999999886 4457899999999 9999999864
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=7.8e-10 Score=111.92 Aligned_cols=97 Identities=19% Similarity=0.170 Sum_probs=73.4
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWN 289 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~ 289 (626)
+.+|||+|||+|.++..+++. .++++|+++..+..+.. .+..+++.+.+...+... ++++++||+|+++...+
T Consensus 121 ~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~-n~~~~~~~v~~~~~d~~~-~~~~~~fD~Vv~n~~~~--- 195 (254)
T 2nxc_A 121 GDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEA-NAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLYAE--- 195 (254)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHH-HHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECCHH---
T ss_pred CCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHH-HHHHcCCcEEEEECChhh-cCcCCCCCEEEECCcHH---
Confidence 568999999999999988886 58899999876655443 344556556666666443 24467899999976542
Q ss_pred ccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 290 QFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 290 ~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
....++.++.++|||||++++++.
T Consensus 196 -~~~~~l~~~~~~LkpgG~lils~~ 219 (254)
T 2nxc_A 196 -LHAALAPRYREALVPGGRALLTGI 219 (254)
T ss_dssp -HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -HHHHHHHHHHHHcCCCCEEEEEee
Confidence 236789999999999999999853
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=5.6e-10 Score=111.07 Aligned_cols=98 Identities=19% Similarity=0.351 Sum_probs=78.1
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceeccccccCCCCC-Cccceeeecc
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYTNWCEAMSTYP-RTYDLIHADS 540 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~~~~e~~~~yp-~t~Dlih~~~ 540 (626)
..-.+|||+|||.|.++..|++... +|+.+|.++.+++.+.++ |+ +.+.+.-.+.+. ++ ++||+|++..
T Consensus 20 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~ 95 (239)
T 1xxl_A 20 RAEHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP-FPDDSFDIITCRY 95 (239)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC-SCTTCEEEEEEES
T ss_pred CCCCEEEEEccCcCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCC-CCCCcEEEEEECC
Confidence 3456899999999999999998864 899999999999987765 33 333332223332 44 8999999999
Q ss_pred ccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 541 VFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 541 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
++.+.. +...+|.|+.|+|||||++++.+
T Consensus 96 ~l~~~~---~~~~~l~~~~~~LkpgG~l~~~~ 124 (239)
T 1xxl_A 96 AAHHFS---DVRKAVREVARVLKQDGRFLLVD 124 (239)
T ss_dssp CGGGCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhhcc---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 998876 56899999999999999999975
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.00 E-value=5.9e-10 Score=113.39 Aligned_cols=97 Identities=11% Similarity=0.143 Sum_probs=77.8
Q ss_pred CceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-cceeccccccCCCCCCccceeeeccccccCCC
Q 006905 469 RYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-VGTYTNWCEAMSTYPRTYDLIHADSVFSLYKD 547 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-i~~~~~~~e~~~~yp~t~Dlih~~~~f~~~~~ 547 (626)
.-.+|||+|||.|.++..|++.+. +|+.+|.++.+++.+.++.- +.....-.+.++ ++.+||+|++..++.+..
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~- 131 (279)
T 3ccf_A 57 PGEFILDLGCGTGQLTEKIAQSGA---EVLGTDNAATMIEKARQNYPHLHFDVADARNFR-VDKPLDAVFSNAMLHWVK- 131 (279)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCTTSCEEECCTTTCC-CSSCEEEEEEESCGGGCS-
T ss_pred CCCEEEEecCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHhhCCCCEEEECChhhCC-cCCCcCEEEEcchhhhCc-
Confidence 356899999999999999998665 89999999999999988741 223332122222 368999999999998876
Q ss_pred CCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 548 RCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 548 ~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
+.+.+|.|+.|+|||||++++..
T Consensus 132 --d~~~~l~~~~~~LkpgG~l~~~~ 154 (279)
T 3ccf_A 132 --EPEAAIASIHQALKSGGRFVAEF 154 (279)
T ss_dssp --CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --CHHHHHHHHHHhcCCCcEEEEEe
Confidence 56899999999999999999974
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.00 E-value=8.6e-10 Score=104.54 Aligned_cols=92 Identities=11% Similarity=0.056 Sum_probs=69.2
Q ss_pred CCEEEEeCCCCchHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEeccccccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQ 290 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~ 290 (626)
+.+|||+|||+|.++..|+++ .++++|+++. +++. ...+.+.++|... ++++++||+|+++..+++..+
T Consensus 24 ~~~vLD~GcG~G~~~~~l~~~~~v~gvD~s~~-----~~~~----~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~~~~~ 93 (170)
T 3q87_B 24 MKIVLDLGTSTGVITEQLRKRNTVVSTDLNIR-----ALES----HRGGNLVRADLLC-SINQESVDVVVFNPPYVPDTD 93 (170)
T ss_dssp SCEEEEETCTTCHHHHHHTTTSEEEEEESCHH-----HHHT----CSSSCEEECSTTT-TBCGGGCSEEEECCCCBTTCC
T ss_pred CCeEEEeccCccHHHHHHHhcCcEEEEECCHH-----HHhc----ccCCeEEECChhh-hcccCCCCEEEECCCCccCCc
Confidence 458999999999999999988 5667777553 3333 2335667777665 666789999999988754332
Q ss_pred c--------HHHHHHHHHhcccCCeEEEEEeC
Q 006905 291 F--------GGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 291 ~--------~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
. ...++.++.+.| |||.+++..+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~ 124 (170)
T 3q87_B 94 DPIIGGGYLGREVIDRFVDAV-TVGMLYLLVI 124 (170)
T ss_dssp CTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEE
T ss_pred cccccCCcchHHHHHHHHhhC-CCCEEEEEEe
Confidence 2 257889999999 9999999753
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.6e-09 Score=104.90 Aligned_cols=115 Identities=16% Similarity=0.159 Sum_probs=87.6
Q ss_pred CceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceeccccccC-CCCC--Cccceeeec
Q 006905 469 RYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYTNWCEAM-STYP--RTYDLIHAD 539 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~~~~e~~-~~yp--~t~Dlih~~ 539 (626)
.-.+|||+|||.|.++..|++..- ..+|+.+|.++.+++.+.++ |+ +.+++ ..+ ...+ .+||+|.++
T Consensus 40 ~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~---~d~~~~~~~~~~~D~i~~~ 115 (204)
T 3e05_A 40 DDLVMWDIGAGSASVSIEASNLMP-NGRIFALERNPQYLGFIRDNLKKFVARNVTLVE---AFAPEGLDDLPDPDRVFIG 115 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHCT-TSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEE---CCTTTTCTTSCCCSEEEES
T ss_pred CCCEEEEECCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEe---CChhhhhhcCCCCCEEEEC
Confidence 356899999999999999988740 12789999999999988776 33 23333 222 2222 789999987
Q ss_pred cccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC-hHHHHHHHHHHHhCCCeeEE
Q 006905 540 SVFSLYKDRCETEDILLEMDRILRPEGGVIFRDD-VDELVKVKRIIDALKWQSQI 593 (626)
Q Consensus 540 ~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~-~~~~~~~~~~~~~l~w~~~~ 593 (626)
..+. ++..+|.++.|+|||||.+++... .+....+.++++...|+..+
T Consensus 116 ~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~ 164 (204)
T 3e05_A 116 GSGG------MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGYMVEV 164 (204)
T ss_dssp CCTT------CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCc------CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCCceeE
Confidence 6553 678999999999999999999854 46778888888888886553
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.00 E-value=9.9e-10 Score=109.74 Aligned_cols=96 Identities=19% Similarity=0.244 Sum_probs=77.2
Q ss_pred CceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc--c---cceeccccccCCCCC-Cccceeeecccc
Q 006905 469 RYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG--L---VGTYTNWCEAMSTYP-RTYDLIHADSVF 542 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg--l---i~~~~~~~e~~~~yp-~t~Dlih~~~~f 542 (626)
.-.+|||+|||.|.++..|++.+. +|+.+|.++.+++.+.++- . +...+.-.+.+. +| .+||+|++..+|
T Consensus 39 ~~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 39 EEPVFLELGVGTGRIALPLIARGY---RYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIP-LPDESVHGVIVVHLW 114 (263)
T ss_dssp SCCEEEEETCTTSTTHHHHHTTTC---EEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCC-SCTTCEEEEEEESCG
T ss_pred CCCEEEEeCCcCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCC-CCCCCeeEEEECCch
Confidence 356899999999999999999865 7999999999999998872 1 223331112222 44 899999999999
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
.+.. +.+.+|.|+.|+|||||++++.
T Consensus 115 ~~~~---~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 115 HLVP---DWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp GGCT---THHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcC---CHHHHHHHHHHHCCCCcEEEEE
Confidence 8876 5689999999999999999986
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.00 E-value=2e-09 Score=101.12 Aligned_cols=117 Identities=12% Similarity=0.057 Sum_probs=87.2
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----ccc-c-eec-cccccCCCCCCccceeeecc
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GLV-G-TYT-NWCEAMSTYPRTYDLIHADS 540 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gli-~-~~~-~~~e~~~~yp~t~Dlih~~~ 540 (626)
..-.+|||+|||.|.++..|++.. -..+|+.+|.++.+++.+.++ |+- . .++ +..+.+...+.+||+|.+..
T Consensus 24 ~~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~ 102 (178)
T 3hm2_A 24 KPHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIGG 102 (178)
T ss_dssp CTTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEECC
T ss_pred cCCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEEECC
Confidence 335789999999999999998871 013789999999999998876 432 1 333 33344443338999999977
Q ss_pred ccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC-hHHHHHHHHHHHhCCCeeE
Q 006905 541 VFSLYKDRCETEDILLEMDRILRPEGGVIFRDD-VDELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 541 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~-~~~~~~~~~~~~~l~w~~~ 592 (626)
.+.+ ..+|.++.|+|||||.+++.+. .+....+.++++...++..
T Consensus 103 ~~~~-------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (178)
T 3hm2_A 103 GLTA-------PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGGTIS 148 (178)
T ss_dssp -TTC-------TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHCCEEE
T ss_pred cccH-------HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcCCeeE
Confidence 7765 5699999999999999999865 4566777778777777665
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.00 E-value=4.5e-10 Score=110.72 Aligned_cols=100 Identities=19% Similarity=0.210 Sum_probs=77.6
Q ss_pred CceeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHHHhcc-cceeccccccCCCCC--Cccceeeeccccc
Q 006905 469 RYRNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIYERGL-VGTYTNWCEAMSTYP--RTYDLIHADSVFS 543 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~~rgl-i~~~~~~~e~~~~yp--~t~Dlih~~~~f~ 543 (626)
.-.+|||+|||.|.++..|++. +. +|+.+|.++.+++.+.++-- .+.+.-.+..+..+| ++||+|.+..++.
T Consensus 44 ~~~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~ 120 (234)
T 3dtn_A 44 ENPDILDLGAGTGLLSAFLMEKYPEA---TFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSIH 120 (234)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEEEEEESCGG
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCC---eEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceEEEEeCccc
Confidence 3578999999999999999887 54 78999999999999988732 111111234444444 8999999999999
Q ss_pred cCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 544 LYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 544 ~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
+..+. ....+|.|+.|+|||||.+++.+
T Consensus 121 ~~~~~-~~~~~l~~~~~~LkpgG~l~~~~ 148 (234)
T 3dtn_A 121 HLEDE-DKKELYKRSYSILKESGIFINAD 148 (234)
T ss_dssp GSCHH-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCHH-HHHHHHHHHHHhcCCCcEEEEEE
Confidence 88532 22359999999999999999986
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.00 E-value=3.1e-10 Score=115.72 Aligned_cols=116 Identities=16% Similarity=0.190 Sum_probs=87.9
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc-cceeccccccCCCC--CCccceeeecccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL-VGTYTNWCEAMSTY--PRTYDLIHADSVF 542 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl-i~~~~~~~e~~~~y--p~t~Dlih~~~~f 542 (626)
-.+|||+|||.|.++.+|++.+. +|+.+|.++.+++.+.++ |+ +.++. ..+..+ +.+||+|.+..+|
T Consensus 121 ~~~vLD~GcG~G~~~~~l~~~g~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~fD~i~~~~~~ 194 (286)
T 3m70_A 121 PCKVLDLGCGQGRNSLYLSLLGY---DVTSWDHNENSIAFLNETKEKENLNISTAL---YDINAANIQENYDFIVSTVVF 194 (286)
T ss_dssp SCEEEEESCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCEEEEE---CCGGGCCCCSCEEEEEECSSG
T ss_pred CCcEEEECCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHcCCceEEEE---eccccccccCCccEEEEccch
Confidence 45799999999999999999976 899999999999987775 32 22222 233332 5899999999999
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh--------------HHHHHHHHHHHhCCCeeEEe
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIFRDDV--------------DELVKVKRIIDALKWQSQIV 594 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~--------------~~~~~~~~~~~~l~w~~~~~ 594 (626)
.+... -.+..+|.++.|+|||||.+++.... -....+++++.. |++..+
T Consensus 195 ~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ 257 (286)
T 3m70_A 195 MFLNR-ERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD--WEFLEY 257 (286)
T ss_dssp GGSCG-GGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTT--SEEEEE
T ss_pred hhCCH-HHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcC--CEEEEE
Confidence 88753 36789999999999999998775321 114567777766 887654
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.00 E-value=7.7e-10 Score=108.31 Aligned_cols=100 Identities=17% Similarity=0.206 Sum_probs=77.9
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhccc-c-------eeccccccCCCC--C-Cccceeee
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLV-G-------TYTNWCEAMSTY--P-RTYDLIHA 538 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli-~-------~~~~~~e~~~~y--p-~t~Dlih~ 538 (626)
-.+|||+|||.|.++..|++.+. +|+.+|.++.+++.+.++.-- + .+.-.+..+..+ + ++||+|.+
T Consensus 31 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 107 (235)
T 3sm3_A 31 DDEILDIGCGSGKISLELASKGY---SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVM 107 (235)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEE
T ss_pred CCeEEEECCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEE
Confidence 45799999999999999999876 899999999999999885421 1 011122333333 3 89999999
Q ss_pred ccccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 539 DSVFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 539 ~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
..++.+..+.-....+|.++.|+|||||.+++.+
T Consensus 108 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (235)
T 3sm3_A 108 QAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVE 141 (235)
T ss_dssp ESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 9999988754334489999999999999999975
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.00 E-value=6.3e-10 Score=113.97 Aligned_cols=96 Identities=23% Similarity=0.249 Sum_probs=77.1
Q ss_pred ceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHh----cc---cceeccccccCCCCC-Cccceeeecc
Q 006905 470 YRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYER----GL---VGTYTNWCEAMSTYP-RTYDLIHADS 540 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~~~~e~~~~yp-~t~Dlih~~~ 540 (626)
-.+|||+|||.|.++..|++. +. +|+.+|.++.++..+.++ |+ +.+.+.-.+.+ ++| .+||+|++..
T Consensus 83 ~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~~ 158 (297)
T 2o57_A 83 QAKGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI-PCEDNSYDFIWSQD 158 (297)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC-SSCTTCEEEEEEES
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC-CCCCCCEeEEEecc
Confidence 568999999999999999886 65 799999999999988775 33 33333211222 244 8999999999
Q ss_pred ccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 541 VFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 541 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
++.+..+ ...+|.|+.|+|||||.+++.+
T Consensus 159 ~l~~~~~---~~~~l~~~~~~LkpgG~l~~~~ 187 (297)
T 2o57_A 159 AFLHSPD---KLKVFQECARVLKPRGVMAITD 187 (297)
T ss_dssp CGGGCSC---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhcCC---HHHHHHHHHHHcCCCeEEEEEE
Confidence 9999875 6899999999999999999985
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.4e-09 Score=116.74 Aligned_cols=123 Identities=15% Similarity=0.136 Sum_probs=83.0
Q ss_pred CCCCC-cHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC----C
Q 006905 188 TMFPN-GADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV----P 258 (626)
Q Consensus 188 t~F~~-ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~----~ 258 (626)
..|.. ..+.-...+.+.+.... ..+|||+|||+|.++..++++ .|+++|+++.++..+..+. ...++ .
T Consensus 200 g~Fs~~~~d~~~~~ll~~l~~~~--~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~-~~ngl~~~~~ 276 (375)
T 4dcm_A 200 NVFSRTGLDIGARFFMQHLPENL--EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNV-ETNMPEALDR 276 (375)
T ss_dssp TCTTCSSCCHHHHHHHHTCCCSC--CSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHH-HHHCGGGGGG
T ss_pred CcccCCcccHHHHHHHHhCcccC--CCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHH-HHcCCCcCce
Confidence 33433 33333344555554333 368999999999999999886 5888998876555444333 33443 3
Q ss_pred eEEEEcccccCCCCCCCeeEEEecccccccc---ccH-HHHHHHHHhcccCCeEEEEEeC
Q 006905 259 ALIGVLAAERLPYPSRAFDMAHCSRCLIPWN---QFG-GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 259 ~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~---~~~-~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+.+...|... ++++++||+|+|+..+++.. ... ..++.++.++|||||.++++.+
T Consensus 277 v~~~~~D~~~-~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n 335 (375)
T 4dcm_A 277 CEFMINNALS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 335 (375)
T ss_dssp EEEEECSTTT-TCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEechhhc-cCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 5667777555 56778999999998885421 111 4689999999999999999864
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.9e-09 Score=105.69 Aligned_cols=111 Identities=15% Similarity=0.153 Sum_probs=86.0
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceeccccccCCCCC-CccceeeeccccccCCCC
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYP-RTYDLIHADSVFSLYKDR 548 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~yp-~t~Dlih~~~~f~~~~~~ 548 (626)
-.+|||+|||.|.++..|++. +.+|.++.+++.+.++++ .++..-.+.++ ++ ++||+|.+..++.+..
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~~~-~~~~~d~~~~~-~~~~~fD~v~~~~~l~~~~-- 116 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKRGV-FVLKGTAENLP-LKDESFDFALMVTTICFVD-- 116 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHTTC-EEEECBTTBCC-SCTTCEEEEEEESCGGGSS--
T ss_pred CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhcCC-EEEEcccccCC-CCCCCeeEEEEcchHhhcc--
Confidence 457999999999999999887 677888899999999854 33332122222 44 7999999999998875
Q ss_pred CCHHHHHHHhhhhccCCcEEEEEcCh------------------------HHHHHHHHHHHhCCCeeE
Q 006905 549 CETEDILLEMDRILRPEGGVIFRDDV------------------------DELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 549 c~~~~~l~E~dRiLRPgG~~i~~d~~------------------------~~~~~~~~~~~~l~w~~~ 592 (626)
+...+|.++.|+|||||.+++.+.. -....+++++....++..
T Consensus 117 -~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~ 183 (219)
T 1vlm_A 117 -DPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEF 183 (219)
T ss_dssp -CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEE
T ss_pred -CHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEE
Confidence 5689999999999999999997421 024677788888888765
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.6e-10 Score=116.46 Aligned_cols=101 Identities=17% Similarity=0.232 Sum_probs=78.5
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc----c------cceec-cccccCC-C-CC-Cccce
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG----L------VGTYT-NWCEAMS-T-YP-RTYDL 535 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg----l------i~~~~-~~~e~~~-~-yp-~t~Dl 535 (626)
-.+|||+|||+|.++..|++.+. +|+.+|.++.+++.+.++. . +.+.. ++. .+. . ++ .+||+
T Consensus 58 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~fD~ 133 (293)
T 3thr_A 58 CHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWL-TLDKDVPAGDGFDA 133 (293)
T ss_dssp CCEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGG-GHHHHSCCTTCEEE
T ss_pred CCEEEEecCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChh-hCccccccCCCeEE
Confidence 46799999999999999999976 8999999999999998753 1 11111 111 111 0 44 89999
Q ss_pred eeec-cccccCCC----CCCHHHHHHHhhhhccCCcEEEEEcCh
Q 006905 536 IHAD-SVFSLYKD----RCETEDILLEMDRILRPEGGVIFRDDV 574 (626)
Q Consensus 536 ih~~-~~f~~~~~----~c~~~~~l~E~dRiLRPgG~~i~~d~~ 574 (626)
|+|. .+|.+..+ .-+...+|.++.|+|||||++++....
T Consensus 134 V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 134 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp EEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 9998 78988875 334688999999999999999998643
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.6e-09 Score=108.31 Aligned_cols=142 Identities=8% Similarity=0.013 Sum_probs=97.5
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc--------------------------------
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-------------------------------- 515 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-------------------------------- 515 (626)
..-.+|||+|||.|.++..|++.+. .+|+.+|.++.+++.+.++--
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence 3457899999999999999998865 589999999999998866531
Q ss_pred ---c-ceec-cccccCCC-CC---CccceeeeccccccCCC-CCCHHHHHHHhhhhccCCcEEEEEcChH----------
Q 006905 516 ---V-GTYT-NWCEAMST-YP---RTYDLIHADSVFSLYKD-RCETEDILLEMDRILRPEGGVIFRDDVD---------- 575 (626)
Q Consensus 516 ---i-~~~~-~~~e~~~~-yp---~t~Dlih~~~~f~~~~~-~c~~~~~l~E~dRiLRPgG~~i~~d~~~---------- 575 (626)
+ .+.+ |..+ ... -+ .+||+|.+..++.+... .-++..+|.++.|+|||||++++.+...
T Consensus 133 ~~~v~~~~~~d~~~-~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~ 211 (265)
T 2i62_A 133 RRAIKQVLKCDVTQ-SQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQK 211 (265)
T ss_dssp HHHEEEEEECCTTS-SSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEE
T ss_pred hhhheeEEEeeecc-CCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCcc
Confidence 2 2222 2222 222 13 79999999988874321 1245789999999999999999976221
Q ss_pred ------HHHHHHHHHHhCCCeeEEeecCCCC-------CCcceEEEEEec
Q 006905 576 ------ELVKVKRIIDALKWQSQIVDHEDGP-------LEREKLLFAVKL 612 (626)
Q Consensus 576 ------~~~~~~~~~~~l~w~~~~~~~e~~~-------~~~e~~l~~~K~ 612 (626)
....+.+++....+++......... ....-+++++|.
T Consensus 212 ~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~ 261 (265)
T 2i62_A 212 FSSLPLGWETVRDAVEEAGYTIEQFEVISQNYSSTTSNNEGLFSLVGRKP 261 (265)
T ss_dssp EECCCCCHHHHHHHHHHTTCEEEEEEEECCCCCTTTBCCCCEEEEEEECC
T ss_pred ccccccCHHHHHHHHHHCCCEEEEEEEecccCCccccccceEEEEEeccc
Confidence 2447888888888877644322111 112346777774
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.6e-09 Score=112.99 Aligned_cols=108 Identities=20% Similarity=0.267 Sum_probs=81.6
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCCCCC
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLPYPS 273 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lpf~d 273 (626)
.+.+.+... ...+|||||||+|.++..++++ .++++|+ +..+..+..+.. +.+. .+.+..+|....|+++
T Consensus 181 ~l~~~~~~~--~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~ 256 (359)
T 1x19_A 181 LLLEEAKLD--GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAA-EKGVADRMRGIAVDIYKESYPE 256 (359)
T ss_dssp HHHHHCCCT--TCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHH-HTTCTTTEEEEECCTTTSCCCC
T ss_pred HHHHhcCCC--CCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHH-hcCCCCCEEEEeCccccCCCCC
Confidence 444444333 3569999999999999999875 5788898 766655443333 3343 3778888887777765
Q ss_pred CCeeEEEecccccccccc-HHHHHHHHHhcccCCeEEEEEe
Q 006905 274 RAFDMAHCSRCLIPWNQF-GGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 274 ~sFDlV~~~~~l~h~~~~-~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
. |+|++..++++|.++ ...+|+++.++|||||++++..
T Consensus 257 ~--D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e 295 (359)
T 1x19_A 257 A--DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 295 (359)
T ss_dssp C--SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred C--CEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 4 999999999888763 3789999999999999998875
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.99 E-value=5.3e-10 Score=112.35 Aligned_cols=100 Identities=16% Similarity=0.118 Sum_probs=72.5
Q ss_pred CCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEccc---ccCCCCCCCeeEEE
Q 006905 209 DGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAA---ERLPYPSRAFDMAH 280 (626)
Q Consensus 209 ~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~---~~Lpf~d~sFDlV~ 280 (626)
-.++.+|||+|||+|.++..|++. .|+++|+++.++..+. +.+.++ .++.....+. ...++..+++|+|+
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~-~~a~~~-~ni~~V~~d~~~p~~~~~~~~~vDvVf 152 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLL-TVVRDR-RNIFPILGDARFPEKYRHLVEGVDGLY 152 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHH-HHSTTC-TTEEEEESCTTCGGGGTTTCCCEEEEE
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHH-HhhHhh-cCeeEEEEeccCccccccccceEEEEE
Confidence 344669999999999999999985 4899999886654332 233222 2344454553 34566778999999
Q ss_pred eccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 281 CSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 281 ~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+... .+.+...++.++.|+|||||.++++.
T Consensus 153 ~d~~---~~~~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 153 ADVA---QPEQAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp ECCC---CTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred Eecc---CChhHHHHHHHHHHhccCCCEEEEEE
Confidence 8653 33455789999999999999999974
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.9e-09 Score=115.37 Aligned_cols=100 Identities=14% Similarity=0.115 Sum_probs=77.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEcccccCCCCCCCeeEEEecccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAERLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~Lpf~d~sFDlV~~~~~l 285 (626)
.+.+|||||||+|.++..++++ .|+++|++ .++..+ .+.+...+.. +.+..+|...++++ ++||+|++....
T Consensus 63 ~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a-~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 63 EGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHA-RALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEWMG 139 (376)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHH-HHHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECCCB
T ss_pred CCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHH-HHHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcChh
Confidence 3569999999999999999886 68899998 566544 4445556654 78888899888877 889999996644
Q ss_pred cccc--ccHHHHHHHHHhcccCCeEEEEEe
Q 006905 286 IPWN--QFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 286 ~h~~--~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+... .....++.++.|+|||||.++++.
T Consensus 140 ~~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 140 YFLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp TTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred hcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 2222 345789999999999999998853
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.7e-09 Score=112.84 Aligned_cols=109 Identities=10% Similarity=0.054 Sum_probs=79.8
Q ss_pred HHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--C---cEEEeCCccchHHHHHHHHHHcCCC-eEEEEcccccC
Q 006905 196 AYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--N---IITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAERL 269 (626)
Q Consensus 196 ~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~---V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~~L 269 (626)
.....+.+.+...+ +.+|||||||+|.++..+++. . |+++|+++..+..+. +.+...+.+ +.+...|....
T Consensus 62 ~~~~~l~~~l~~~~--~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~-~~~~~~g~~~v~~~~~d~~~~ 138 (317)
T 1dl5_A 62 SLMALFMEWVGLDK--GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAK-RNVERLGIENVIFVCGDGYYG 138 (317)
T ss_dssp HHHHHHHHHTTCCT--TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHH-HHHHHTTCCSEEEEESCGGGC
T ss_pred HHHHHHHHhcCCCC--cCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCeEEEECChhhc
Confidence 34455666665444 459999999999999998875 3 899999875554333 233344543 67777787765
Q ss_pred CCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 270 PYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 270 pf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+.++++||+|++..+++|.. .++.++|||||.+++...
T Consensus 139 ~~~~~~fD~Iv~~~~~~~~~-------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 139 VPEFSPYDVIFVTVGVDEVP-------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp CGGGCCEEEEEECSBBSCCC-------HHHHHHEEEEEEEEEEBC
T ss_pred cccCCCeEEEEEcCCHHHHH-------HHHHHhcCCCcEEEEEEC
Confidence 55567899999999886654 578899999999999854
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.1e-09 Score=108.73 Aligned_cols=97 Identities=15% Similarity=-0.006 Sum_probs=72.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCCCC---CCCeeEEEec
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLPYP---SRAFDMAHCS 282 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lpf~---d~sFDlV~~~ 282 (626)
.+.+|||||||+|..+..|+.. .|+++|+++..+..+.. .+.+.++ ++.+..++++.++.. +++||+|+|.
T Consensus 80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVER-AIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHH-HHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 4568999999999988888764 68899988765554333 3334455 477788887777643 4789999996
Q ss_pred cccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 283 RCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 283 ~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
.+. +...++.++.++|||||+|++..
T Consensus 159 a~~-----~~~~ll~~~~~~LkpgG~l~~~~ 184 (249)
T 3g89_A 159 AVA-----PLCVLSELLLPFLEVGGAAVAMK 184 (249)
T ss_dssp SSC-----CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CcC-----CHHHHHHHHHHHcCCCeEEEEEe
Confidence 532 34789999999999999998864
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.98 E-value=5.9e-10 Score=112.79 Aligned_cols=97 Identities=15% Similarity=0.277 Sum_probs=76.6
Q ss_pred CceeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHHHh----cc--cceeccccccCCCCC-Cccceeeec
Q 006905 469 RYRNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIYER----GL--VGTYTNWCEAMSTYP-RTYDLIHAD 539 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~~~~e~~~~yp-~t~Dlih~~ 539 (626)
.-.+|||+|||.|.++..|++. +. +|+.+|.++.+++.+.++ |+ +.....-.+.+. +| .+||+|++.
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~ 112 (276)
T 3mgg_A 37 PGAKVLEAGCGIGAQTVILAKNNPDA---EITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLP-FEDSSFDHIFVC 112 (276)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCC-SCTTCEEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCC-CCCCCeeEEEEe
Confidence 3568999999999999999876 44 789999999999988876 33 233331122222 33 899999999
Q ss_pred cccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 540 SVFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 540 ~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
.++.+.. +.+.+|.++.|+|||||++++.+
T Consensus 113 ~~l~~~~---~~~~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 113 FVLEHLQ---SPEEALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp SCGGGCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhhhcC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 9999887 45899999999999999999975
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=98.98 E-value=9.3e-10 Score=111.03 Aligned_cols=95 Identities=25% Similarity=0.302 Sum_probs=76.6
Q ss_pred CceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHh----cc---cceeccccccCC--CCC-Cccceee
Q 006905 469 RYRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYER----GL---VGTYTNWCEAMS--TYP-RTYDLIH 537 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~~~~e~~~--~yp-~t~Dlih 537 (626)
.-.+|||+|||.|.++..|++. +. +|+.+|.++.+++.+.++ |+ +.+.+ ..+. ++| .+||+|+
T Consensus 61 ~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~fD~v~ 134 (273)
T 3bus_A 61 SGDRVLDVGCGIGKPAVRLATARDV---RVTGISISRPQVNQANARATAAGLANRVTFSY---ADAMDLPFEDASFDAVW 134 (273)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHSCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE---CCTTSCCSCTTCEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEE---CccccCCCCCCCccEEE
Confidence 3568999999999999999874 44 899999999999988776 44 33333 2222 244 8999999
Q ss_pred eccccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 538 ADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 538 ~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
+..+|.+..+ .+.+|.|+.|+|||||.+++.+
T Consensus 135 ~~~~l~~~~~---~~~~l~~~~~~L~pgG~l~i~~ 166 (273)
T 3bus_A 135 ALESLHHMPD---RGRALREMARVLRPGGTVAIAD 166 (273)
T ss_dssp EESCTTTSSC---HHHHHHHHHTTEEEEEEEEEEE
T ss_pred EechhhhCCC---HHHHHHHHHHHcCCCeEEEEEE
Confidence 9999998864 5899999999999999999986
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.7e-09 Score=107.25 Aligned_cols=99 Identities=13% Similarity=0.127 Sum_probs=73.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEccccc---CCCCCCCeeEEEec
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAER---LPYPSRAFDMAHCS 282 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~---Lpf~d~sFDlV~~~ 282 (626)
.+.+|||+|||+|.++..|+++ .++++|+++.++. .+++.+..+ ..+.+..+|... +++.+++||+|++.
T Consensus 77 ~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~-~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGR-DLINLAKKR-TNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHH-HHHHHHHHC-TTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHH-HHHHHhhcc-CCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 3569999999999999998875 5888998774433 345556554 456777777655 45567899999996
Q ss_pred cccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 283 RCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 283 ~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.. ..+....++.++.++|||||.++++..
T Consensus 155 ~~---~~~~~~~~~~~~~~~LkpgG~l~i~~~ 183 (233)
T 2ipx_A 155 VA---QPDQTRIVALNAHTFLRNGGHFVISIK 183 (233)
T ss_dssp CC---CTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CC---CccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence 54 222225568899999999999999754
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.7e-09 Score=102.50 Aligned_cols=141 Identities=15% Similarity=0.088 Sum_probs=99.5
Q ss_pred eeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHHHh----cc---cceeccccccCCCC-CCccceeeecc
Q 006905 471 RNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIYER----GL---VGTYTNWCEAMSTY-PRTYDLIHADS 540 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~~~~e~~~~y-p~t~Dlih~~~ 540 (626)
.+|||+|||.|.++..|++. +- .+|+.+|.++.+++.+.++ |+ +.+++.-.+.+..+ +.+||+|.++.
T Consensus 24 ~~vLDlGcG~G~~~~~l~~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 101 (197)
T 3eey_A 24 DTVVDATCGNGNDTAFLASLVGEN--GRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNL 101 (197)
T ss_dssp CEEEESCCTTSHHHHHHHHHHCTT--CEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEE
T ss_pred CEEEEcCCCCCHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcC
Confidence 47999999999999999875 21 1789999999999988776 33 34444223334433 48999999876
Q ss_pred ccccCCC------CCCHHHHHHHhhhhccCCcEEEEEc------ChHHHHHHHHHHHhCC---CeeEEeecCCCCCCcce
Q 006905 541 VFSLYKD------RCETEDILLEMDRILRPEGGVIFRD------DVDELVKVKRIIDALK---WQSQIVDHEDGPLEREK 605 (626)
Q Consensus 541 ~f~~~~~------~c~~~~~l~E~dRiLRPgG~~i~~d------~~~~~~~~~~~~~~l~---w~~~~~~~e~~~~~~e~ 605 (626)
.+-...+ .-+...+|.++.|+|||||++++.+ ..+....+.+.++.+. |.+..+..-+.+..+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~pp~ 181 (197)
T 3eey_A 102 GYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFINQANCPPI 181 (197)
T ss_dssp SBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEETTCCSCCCE
T ss_pred CcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEeccCccCCCe
Confidence 5511111 1123469999999999999999974 2234566777776665 88877666666667788
Q ss_pred EEEEEecc
Q 006905 606 LLFAVKLY 613 (626)
Q Consensus 606 ~l~~~K~~ 613 (626)
++|.+|..
T Consensus 182 ~~~~~~~~ 189 (197)
T 3eey_A 182 LVCIEKIS 189 (197)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcc
Confidence 88888854
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.98 E-value=3e-09 Score=111.13 Aligned_cols=99 Identities=13% Similarity=0.040 Sum_probs=77.2
Q ss_pred CEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHc-CCCeEEEEcccccCCCCCCCeeEEEecccccc
Q 006905 213 RTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALER-GVPALIGVLAAERLPYPSRAFDMAHCSRCLIP 287 (626)
Q Consensus 213 ~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~er-g~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h 287 (626)
.+|||||||+|.++..++++ .++++|+ +..+..+........ ...+.+..+|... +++ ++||+|++..++|+
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~vl~~ 245 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SNGDIYLLSRIIGD 245 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SSCSEEEEESCGGG
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CCCCEEEEchhccC
Confidence 69999999999999998875 5889999 767765544433221 2246777777655 555 67999999999988
Q ss_pred ccccH-HHHHHHHHhcccCCeEEEEEeC
Q 006905 288 WNQFG-GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 288 ~~~~~-~~~L~Ei~RvLKPGG~lvis~p 314 (626)
|.+.. ..+|+++.++|||||++++...
T Consensus 246 ~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 273 (334)
T 2ip2_A 246 LDEAASLRLLGNCREAMAGDGRVVVIER 273 (334)
T ss_dssp CCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 87643 4899999999999999999864
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.5e-09 Score=113.57 Aligned_cols=99 Identities=18% Similarity=0.199 Sum_probs=74.9
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCCCCCCCeeEEEecccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lpf~d~sFDlV~~~~~l 285 (626)
..+|||||||+|.++..++++ .++++|+ +..+..+.. ...+.++ .+.+..+|.. .+++. +||+|++..++
T Consensus 170 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~vl 245 (332)
T 3i53_A 170 LGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHR-RFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSAVL 245 (332)
T ss_dssp GSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHH-HHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEESCG
T ss_pred CCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHH-hhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEehhh
Confidence 569999999999999998874 4667777 544433322 2223343 4778877765 45555 89999999999
Q ss_pred ccccccH-HHHHHHHHhcccCCeEEEEEeC
Q 006905 286 IPWNQFG-GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 286 ~h~~~~~-~~~L~Ei~RvLKPGG~lvis~p 314 (626)
|+|.++. ..+|+++.++|||||++++...
T Consensus 246 h~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 275 (332)
T 3i53_A 246 HDWDDLSAVAILRRCAEAAGSGGVVLVIEA 275 (332)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCEEEEEee
Confidence 8887653 7899999999999999999764
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=6.7e-10 Score=114.12 Aligned_cols=100 Identities=15% Similarity=0.176 Sum_probs=72.6
Q ss_pred CceeEEeccCchhhHhhhh----hC--CCeEEEEeccCccCcccHHHHHHh-----cccceeccc----cccCC-----C
Q 006905 469 RYRNILDMNAHLGGFAAAL----ID--FPVWVMNVVPAEAKINTLGVIYER-----GLVGTYTNW----CEAMS-----T 528 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l----~~--~~v~~mnv~~~~~~~~~l~~~~~r-----gli~~~~~~----~e~~~-----~ 528 (626)
.-.+|||+|||+|.++..+ +. .++ ...++.+|.+++|++.+.++ |+-.+--.| .+.+. .
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~-~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGV-CINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTC-EEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCc-eeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 3568999999999876533 32 133 23569999999999998887 331111111 12222 1
Q ss_pred CC-CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 529 YP-RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 529 yp-~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
++ ++||+|+|..++.+.. +.+.+|.||.|+|||||++++..
T Consensus 131 ~~~~~fD~V~~~~~l~~~~---d~~~~l~~~~r~LkpgG~l~i~~ 172 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVK---DIPATLKFFHSLLGTNAKMLIIV 172 (292)
T ss_dssp TCCCCEEEEEEESCGGGCS---CHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCCceeEEEEeeeeeecC---CHHHHHHHHHHHcCCCcEEEEEE
Confidence 44 8999999999999987 56899999999999999999863
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=5.9e-10 Score=111.30 Aligned_cols=116 Identities=14% Similarity=0.170 Sum_probs=86.7
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc---cceeccccccCCCCC-Cccceeeeccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL---VGTYTNWCEAMSTYP-RTYDLIHADSV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~~~~e~~~~yp-~t~Dlih~~~~ 541 (626)
-.+|||+|||.|.++..|++..- .+|+.+|.++.+++.+.++ |+ +.+.+.=.+.++ +| .+||+|++..+
T Consensus 47 ~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~ 123 (257)
T 3f4k_A 47 DAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLP-FQNEELDLIWSEGA 123 (257)
T ss_dssp TCEEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCS-SCTTCEEEEEEESC
T ss_pred CCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCC-CCCCCEEEEEecCh
Confidence 45899999999999999988732 1789999999999987776 33 233331112332 34 89999999999
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh---------------------HHHHHHHHHHHhCCCeeE
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFRDDV---------------------DELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~---------------------~~~~~~~~~~~~l~w~~~ 592 (626)
+.+. +.+.+|.++.|+|||||++++.+.. .....+.+++..-.++..
T Consensus 124 l~~~----~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v 191 (257)
T 3f4k_A 124 IYNI----GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPT 191 (257)
T ss_dssp SCCC----CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEE
T ss_pred Hhhc----CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEE
Confidence 9876 5789999999999999999998631 123556677777777654
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.8e-09 Score=102.82 Aligned_cols=111 Identities=14% Similarity=0.123 Sum_probs=76.0
Q ss_pred HHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccC
Q 006905 196 AYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERL 269 (626)
Q Consensus 196 ~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~L 269 (626)
.....+.+.+...+ +.+|||||||+|.++..+++. .++++|+++..+..+..... ..+. .+.+...|....
T Consensus 64 ~~~~~~~~~~~~~~--~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~v~~~~~d~~~~ 140 (215)
T 2yxe_A 64 HMVGMMCELLDLKP--GMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLR-KLGYDNVIVIVGDGTLG 140 (215)
T ss_dssp HHHHHHHHHTTCCT--TCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHH-HHTCTTEEEEESCGGGC
T ss_pred HHHHHHHHhhCCCC--CCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH-HcCCCCeEEEECCcccC
Confidence 34445555554333 459999999999999888774 48888887755544333222 2343 356666665332
Q ss_pred CCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 006905 270 PYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPPI 316 (626)
Q Consensus 270 pf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~pp~ 316 (626)
...+++||+|++..++++.. .++.++|||||.+++..++.
T Consensus 141 ~~~~~~fD~v~~~~~~~~~~-------~~~~~~L~pgG~lv~~~~~~ 180 (215)
T 2yxe_A 141 YEPLAPYDRIYTTAAGPKIP-------EPLIRQLKDGGKLLMPVGRY 180 (215)
T ss_dssp CGGGCCEEEEEESSBBSSCC-------HHHHHTEEEEEEEEEEESSS
T ss_pred CCCCCCeeEEEECCchHHHH-------HHHHHHcCCCcEEEEEECCC
Confidence 22367899999999886654 47899999999999987643
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.97 E-value=6e-10 Score=112.47 Aligned_cols=96 Identities=23% Similarity=0.335 Sum_probs=77.5
Q ss_pred CceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceeccccccCCCCC-CccceeeeccccccCCC
Q 006905 469 RYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYP-RTYDLIHADSVFSLYKD 547 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~yp-~t~Dlih~~~~f~~~~~ 547 (626)
.-.+|||+|||+|.++..|++.+. +|+.+|.++.+++.+.++.-+...+.-.+.++ +| ++||+||+..++.+..
T Consensus 34 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~~~- 108 (261)
T 3ege_A 34 KGSVIADIGAGTGGYSVALANQGL---FVYAVEPSIVMRQQAVVHPQVEWFTGYAENLA-LPDKSVDGVISILAIHHFS- 108 (261)
T ss_dssp TTCEEEEETCTTSHHHHHHHTTTC---EEEEECSCHHHHHSSCCCTTEEEECCCTTSCC-SCTTCBSEEEEESCGGGCS-
T ss_pred CCCEEEEEcCcccHHHHHHHhCCC---EEEEEeCCHHHHHHHHhccCCEEEECchhhCC-CCCCCEeEEEEcchHhhcc-
Confidence 357899999999999999999775 89999999888887777653444443233333 44 8999999999998885
Q ss_pred CCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 548 RCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 548 ~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
+.+.+|.|+.|+|| ||++++.+
T Consensus 109 --~~~~~l~~~~~~Lk-gG~~~~~~ 130 (261)
T 3ege_A 109 --HLEKSFQEMQRIIR-DGTIVLLT 130 (261)
T ss_dssp --SHHHHHHHHHHHBC-SSCEEEEE
T ss_pred --CHHHHHHHHHHHhC-CcEEEEEE
Confidence 66899999999999 99888764
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.97 E-value=7.5e-10 Score=113.89 Aligned_cols=95 Identities=11% Similarity=0.097 Sum_probs=74.5
Q ss_pred CceeEEeccCchhhHhhhhh---CCCeEEEEeccCccCcccHHHHHHh-----cc---cceeccccccCCCCC------C
Q 006905 469 RYRNILDMNAHLGGFAAALI---DFPVWVMNVVPAEAKINTLGVIYER-----GL---VGTYTNWCEAMSTYP------R 531 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~---~~~v~~mnv~~~~~~~~~l~~~~~r-----gl---i~~~~~~~e~~~~yp------~ 531 (626)
.-.+|||+|||.|.++..|+ ..+. +|+.+|.++.+++.+.++ |. +..++.-.+.+..-. +
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 112 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPFE---QIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQ 112 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCCS---EEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSS
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCC---EEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCC
Confidence 46789999999999999999 4554 799999999999999887 32 233332122222111 6
Q ss_pred ccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEE
Q 006905 532 TYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIF 570 (626)
Q Consensus 532 t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~ 570 (626)
+||+|++..++.+. +...+|.++.|+|||||++++
T Consensus 113 ~fD~V~~~~~l~~~----~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 113 KIDMITAVECAHWF----DFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp CEEEEEEESCGGGS----CHHHHHHHHHHHEEEEEEEEE
T ss_pred CeeEEeHhhHHHHh----CHHHHHHHHHHhcCCCcEEEE
Confidence 99999999998887 679999999999999999998
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=3.1e-09 Score=100.28 Aligned_cols=112 Identities=18% Similarity=0.148 Sum_probs=78.3
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCC
Q 006905 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLP 270 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lp 270 (626)
......+.+.+.... +.+|||+|||+|.++..+++. .++++|+++..+..+..+ ....+. .+.+...|... +
T Consensus 19 ~~~~~~~~~~~~~~~--~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~-~~~~~~~~~~~~~~~d~~~-~ 94 (192)
T 1l3i_A 19 MEVRCLIMCLAEPGK--NDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMN-LQRHGLGDNVTLMEGDAPE-A 94 (192)
T ss_dssp HHHHHHHHHHHCCCT--TCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHH-HHHTTCCTTEEEEESCHHH-H
T ss_pred HHHHHHHHHhcCCCC--CCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHH-HHHcCCCcceEEEecCHHH-h
Confidence 334444555554433 459999999999999999886 688888877544433322 223444 46666666544 2
Q ss_pred CCC-CCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 271 YPS-RAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 271 f~d-~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+++ ++||+|++..++++ ...++.++.++|+|||.+++..+
T Consensus 95 ~~~~~~~D~v~~~~~~~~----~~~~l~~~~~~l~~gG~l~~~~~ 135 (192)
T 1l3i_A 95 LCKIPDIDIAVVGGSGGE----LQEILRIIKDKLKPGGRIIVTAI 135 (192)
T ss_dssp HTTSCCEEEEEESCCTTC----HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cccCCCCCEEEECCchHH----HHHHHHHHHHhcCCCcEEEEEec
Confidence 233 58999999887633 47899999999999999999854
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=9.5e-10 Score=111.02 Aligned_cols=116 Identities=16% Similarity=0.159 Sum_probs=87.7
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc---cceeccccccCCCCC-Cccceeeeccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL---VGTYTNWCEAMSTYP-RTYDLIHADSV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~~~~e~~~~yp-~t~Dlih~~~~ 541 (626)
-.+|||+|||.|.++..|++.+- .+|+.+|.++.+++.+.++ |+ +.+...-.+.++ +| .+||+|+|..+
T Consensus 47 ~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~i~~~~~ 123 (267)
T 3kkz_A 47 KSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLP-FRNEELDLIWSEGA 123 (267)
T ss_dssp TCEEEEETCTTCHHHHHHHTTCS--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-CCTTCEEEEEESSC
T ss_pred CCEEEEeCCCCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCC-CCCCCEEEEEEcCC
Confidence 56899999999999999998843 3789999999999988776 33 333332112222 34 89999999999
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh---------------------HHHHHHHHHHHhCCCeeE
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFRDDV---------------------DELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~---------------------~~~~~~~~~~~~l~w~~~ 592 (626)
|.+. +...+|.++.|+|||||++++.+.. .....+.+++....++..
T Consensus 124 ~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v 191 (267)
T 3kkz_A 124 IYNI----GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPV 191 (267)
T ss_dssp GGGT----CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEE
T ss_pred ceec----CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEE
Confidence 9887 4689999999999999999998531 124466677777777654
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.2e-09 Score=111.27 Aligned_cols=135 Identities=17% Similarity=0.101 Sum_probs=94.8
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc--ccceecccccc--CCCCC-Cccceeeecccccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG--LVGTYTNWCEA--MSTYP-RTYDLIHADSVFSL 544 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg--li~~~~~~~e~--~~~yp-~t~Dlih~~~~f~~ 544 (626)
-++|||+|||+|+|+..|++.+. -.|+++|.+++||..+..+. ++..-...... ...+| .+||+|.++.+|..
T Consensus 86 g~~vLDiGcGTG~~t~~L~~~ga--~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~s 163 (291)
T 3hp7_A 86 DMITIDIGASTGGFTDVMLQNGA--KLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFIS 163 (291)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC--SEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECCSSSC
T ss_pred ccEEEecCCCccHHHHHHHhCCC--CEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCCCEEEEEeeHhh
Confidence 46899999999999999988864 36899999999999866532 11110000111 12356 46999999888863
Q ss_pred CCCCCCHHHHHHHhhhhccCCcEEEEEcC----------------------hHHHHHHHHHHHhCCCeeEEee--cCCCC
Q 006905 545 YKDRCETEDILLEMDRILRPEGGVIFRDD----------------------VDELVKVKRIIDALKWQSQIVD--HEDGP 600 (626)
Q Consensus 545 ~~~~c~~~~~l~E~dRiLRPgG~~i~~d~----------------------~~~~~~~~~~~~~l~w~~~~~~--~e~~~ 600 (626)
+..+|.|+.|+|||||.+++... .....++...+....|.+.-.. .-.|+
T Consensus 164 ------l~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~spi~g~ 237 (291)
T 3hp7_A 164 ------LNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLDFSPIQGG 237 (291)
T ss_dssp ------GGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEECSSCCG
T ss_pred ------HHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC
Confidence 47799999999999999998611 1256778888888999876433 22344
Q ss_pred C-CcceEEEEEec
Q 006905 601 L-EREKLLFAVKL 612 (626)
Q Consensus 601 ~-~~e~~l~~~K~ 612 (626)
. +.|-++.++|.
T Consensus 238 ~gn~e~l~~~~~~ 250 (291)
T 3hp7_A 238 HGNIEFLAHLEKT 250 (291)
T ss_dssp GGCCCEEEEEEEC
T ss_pred CcCHHHHHHhhhc
Confidence 3 45777777763
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=3e-09 Score=113.27 Aligned_cols=99 Identities=20% Similarity=0.176 Sum_probs=74.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCCCCCCCeeEEEeccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLPYPSRAFDMAHCSRC 284 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lpf~d~sFDlV~~~~~ 284 (626)
...+|||||||+|.++..++++ .++++|+ +..+..+... ..+.++ .+.+..+|.. .+++. .||+|++..+
T Consensus 202 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~~~~l~~~v~~~~~d~~-~~~p~-~~D~v~~~~v 277 (369)
T 3gwz_A 202 GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEAREL-LTGRGLADRCEILPGDFF-ETIPD-GADVYLIKHV 277 (369)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHH-HHHTTCTTTEEEEECCTT-TCCCS-SCSEEEEESC
T ss_pred cCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHh-hhhcCcCCceEEeccCCC-CCCCC-CceEEEhhhh
Confidence 3569999999999999999886 4677777 5444333322 223343 4778777866 56666 8999999999
Q ss_pred cccccccH-HHHHHHHHhcccCCeEEEEEe
Q 006905 285 LIPWNQFG-GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 285 l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+|+|.+.. ..+|+++.++|||||+|++..
T Consensus 278 lh~~~d~~~~~~L~~~~~~L~pgG~l~i~e 307 (369)
T 3gwz_A 278 LHDWDDDDVVRILRRIATAMKPDSRLLVID 307 (369)
T ss_dssp GGGSCHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred hccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 98887643 479999999999999999975
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.3e-09 Score=108.89 Aligned_cols=123 Identities=15% Similarity=0.112 Sum_probs=87.5
Q ss_pred hhhhcCCCCCceeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHHHhcc-cceeccccccCCCCCCcccee
Q 006905 460 MNNQLGQSGRYRNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIYERGL-VGTYTNWCEAMSTYPRTYDLI 536 (626)
Q Consensus 460 ~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~~rgl-i~~~~~~~e~~~~yp~t~Dli 536 (626)
++..+.. ..-.+|||+|||.|.++..|++. +. +|+.+|.++.+++.+.++.- +...+.-.+.+. .+.+||+|
T Consensus 25 l~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v 99 (259)
T 2p35_A 25 LLAQVPL-ERVLNGYDLGCGPGNSTELLTDRYGVN---VITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLL 99 (259)
T ss_dssp HHTTCCC-SCCSSEEEETCTTTHHHHHHHHHHCTT---SEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEE
T ss_pred HHHhcCC-CCCCEEEEecCcCCHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEE
Confidence 3333333 34568999999999999999876 44 68899999999999988832 233332122333 23899999
Q ss_pred eeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh----HHHHHHHHHHHhCCCe
Q 006905 537 HADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV----DELVKVKRIIDALKWQ 590 (626)
Q Consensus 537 h~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~----~~~~~~~~~~~~l~w~ 590 (626)
++..++.+.. +...+|.|+.|+|||||++++.... .....+.++.....|.
T Consensus 100 ~~~~~l~~~~---~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (259)
T 2p35_A 100 YANAVFQWVP---DHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWK 154 (259)
T ss_dssp EEESCGGGST---THHHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHSTTG
T ss_pred EEeCchhhCC---CHHHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcchH
Confidence 9999999875 5689999999999999999998532 1223344455444554
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=98.96 E-value=2.8e-09 Score=112.85 Aligned_cols=113 Identities=12% Similarity=0.099 Sum_probs=83.7
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccC
Q 006905 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERL 269 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~L 269 (626)
..|.+.|.+.+.... +.+|||||||+|.++..++++ .|+++|+++ +.. ...+.+...+. .+.+..+|...+
T Consensus 36 ~~y~~~i~~~l~~~~--~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~-~a~~~~~~~~l~~~v~~~~~d~~~~ 111 (348)
T 2y1w_A 36 GTYQRAILQNHTDFK--DKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQ-HAEVLVKSNNLTDRIVVIPGKVEEV 111 (348)
T ss_dssp HHHHHHHHHTGGGTT--TCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHH-HHHHHHHHTTCTTTEEEEESCTTTC
T ss_pred HHHHHHHHhccccCC--cCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHH-HHHHHHHHcCCCCcEEEEEcchhhC
Confidence 345555666554443 458999999999999998876 588999975 443 33344445554 477788888887
Q ss_pred CCCCCCeeEEEecccccccccc-HHHHHHHHHhcccCCeEEEEE
Q 006905 270 PYPSRAFDMAHCSRCLIPWNQF-GGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 270 pf~d~sFDlV~~~~~l~h~~~~-~~~~L~Ei~RvLKPGG~lvis 312 (626)
+++ ++||+|++...++|+... ....+.++.++|||||.+++.
T Consensus 112 ~~~-~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 112 SLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp CCS-SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred CCC-CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 765 579999999887777643 367888999999999999975
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=8.2e-10 Score=114.52 Aligned_cols=95 Identities=14% Similarity=0.092 Sum_probs=76.8
Q ss_pred CCceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHh----cc---cceeccccccCCC--CC-Ccccee
Q 006905 468 GRYRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYER----GL---VGTYTNWCEAMST--YP-RTYDLI 536 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~~~~e~~~~--yp-~t~Dli 536 (626)
..-.+|||+|||.|.++..|++. +. +|+.+|.++.+++.+.++ |+ +..+. ..+.. +| ++||+|
T Consensus 116 ~~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~~~~~~~~fD~V 189 (312)
T 3vc1_A 116 GPDDTLVDAGCGRGGSMVMAHRRFGS---RVEGVTLSAAQADFGNRRARELRIDDHVRSRV---CNMLDTPFDKGAVTAS 189 (312)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE---CCTTSCCCCTTCEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEE---CChhcCCCCCCCEeEE
Confidence 34678999999999999999987 54 789999999999988775 33 23333 23333 44 899999
Q ss_pred eeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 537 HADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 537 h~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
.+..++.+.. ...+|.|+.|+|||||++++.+
T Consensus 190 ~~~~~l~~~~----~~~~l~~~~~~LkpgG~l~~~~ 221 (312)
T 3vc1_A 190 WNNESTMYVD----LHDLFSEHSRFLKVGGRYVTIT 221 (312)
T ss_dssp EEESCGGGSC----HHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCchhhCC----HHHHHHHHHHHcCCCcEEEEEE
Confidence 9999998873 7999999999999999999975
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=98.96 E-value=1.5e-09 Score=106.01 Aligned_cols=100 Identities=12% Similarity=0.140 Sum_probs=77.0
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc-----------ccceeccccccCCCCC---Cccce
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG-----------LVGTYTNWCEAMSTYP---RTYDL 535 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg-----------li~~~~~~~e~~~~yp---~t~Dl 535 (626)
-.+|||+|||.|.++.+|++.+- ..+|+.+|.++.+++.+.++- -+.++. ..+...+ .+||+
T Consensus 30 ~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~---~d~~~~~~~~~~fD~ 105 (217)
T 3jwh_A 30 ARRVIDLGCGQGNLLKILLKDSF-FEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQ---GALTYQDKRFHGYDA 105 (217)
T ss_dssp CCEEEEETCTTCHHHHHHHHCTT-CSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEE---CCTTSCCGGGCSCSE
T ss_pred CCEEEEeCCCCCHHHHHHHhhCC-CCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEe---CCcccccccCCCcCE
Confidence 45899999999999999998631 127899999999999998872 123333 2333323 79999
Q ss_pred eeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh
Q 006905 536 IHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV 574 (626)
Q Consensus 536 ih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~ 574 (626)
|.|..+|.+... -++..+|.++.|+|||||.+++.+..
T Consensus 106 v~~~~~l~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~~ 143 (217)
T 3jwh_A 106 ATVIEVIEHLDL-SRLGAFERVLFEFAQPKIVIVTTPNI 143 (217)
T ss_dssp EEEESCGGGCCH-HHHHHHHHHHHTTTCCSEEEEEEEBH
T ss_pred EeeHHHHHcCCH-HHHHHHHHHHHHHcCCCEEEEEccCc
Confidence 999999998853 24578999999999999999887654
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.96 E-value=8.6e-10 Score=104.10 Aligned_cols=117 Identities=12% Similarity=-0.010 Sum_probs=77.0
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEccccc-
Q 006905 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAER- 268 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~- 268 (626)
+...+.+.+.+.. ...+.+|||+|||+|.++..++++ .++++|+++..+..+.. .+...+.. +.+...|...
T Consensus 16 ~~~~~~~~~~l~~-~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~ 93 (177)
T 2esr_A 16 DKVRGAIFNMIGP-YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQD-NIIMTKAENRFTLLKMEAERA 93 (177)
T ss_dssp --CHHHHHHHHCS-CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHH-HHHTTTCGGGEEEECSCHHHH
T ss_pred HHHHHHHHHHHHh-hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHH-HHHHcCCCCceEEEECcHHHh
Confidence 3344455555541 123458999999999999988876 57888887755443332 23334443 6677777555
Q ss_pred CCCCCCCeeEEEeccccccccccHHHHHHHHH--hcccCCeEEEEEeCC
Q 006905 269 LPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVD--RVLRPGGYWILSGPP 315 (626)
Q Consensus 269 Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~--RvLKPGG~lvis~pp 315 (626)
++..+++||+|+++..+ +. ......+..+. ++|+|||.+++..+.
T Consensus 94 ~~~~~~~fD~i~~~~~~-~~-~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 140 (177)
T 2esr_A 94 IDCLTGRFDLVFLDPPY-AK-ETIVATIEALAAKNLLSEQVMVVCETDK 140 (177)
T ss_dssp HHHBCSCEEEEEECCSS-HH-HHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred HHhhcCCCCEEEECCCC-Cc-chHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence 44445679999998765 22 22356777776 999999999998653
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.9e-09 Score=101.93 Aligned_cols=131 Identities=17% Similarity=0.177 Sum_probs=90.5
Q ss_pred CceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc----cceec-cccccCCCC-CCccceeee
Q 006905 469 RYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL----VGTYT-NWCEAMSTY-PRTYDLIHA 538 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl----i~~~~-~~~e~~~~y-p~t~Dlih~ 538 (626)
.-.+|||+|||.|.++..+++.+. +|+.+|.++.+++.+.++ |+ +.+.+ |+.+ .. +.+||+|.+
T Consensus 52 ~~~~vLdiG~G~G~~~~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~D~v~~ 125 (194)
T 1dus_A 52 KDDDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE---NVKDRKYNKIIT 125 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT---TCTTSCEEEEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhc---ccccCCceEEEE
Confidence 356899999999999999998854 899999998999988876 33 23333 2222 22 379999999
Q ss_pred ccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh-HHHHHHHHHHHhCCCeeEEeecCCCCCCcceEEEEEe
Q 006905 539 DSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV-DELVKVKRIIDALKWQSQIVDHEDGPLEREKLLFAVK 611 (626)
Q Consensus 539 ~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~-~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K 611 (626)
+..|.+.. -.+..+|.++.|+|||||.+++.+.. +....+.+.++..-+++.+.... ..-.+++++|
T Consensus 126 ~~~~~~~~--~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~k 193 (194)
T 1dus_A 126 NPPIRAGK--EVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTIK----GGYRVLKSKK 193 (194)
T ss_dssp CCCSTTCH--HHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEEEEE----TTEEEEEEEC
T ss_pred CCCcccch--hHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHHhcceEEEecC----CcEEEEEEee
Confidence 87765421 24578999999999999999998654 33444555555543444444333 2345566554
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.1e-09 Score=101.81 Aligned_cols=136 Identities=13% Similarity=0.085 Sum_probs=98.3
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-cceeccccccCCC--CC-Cccceeeec-ccccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-VGTYTNWCEAMST--YP-RTYDLIHAD-SVFSL 544 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-i~~~~~~~e~~~~--yp-~t~Dlih~~-~~f~~ 544 (626)
-.+|||+|||.|.++..|++.+. +|+.+|.++.++..+.++.- +.+++ ..+.. +| ++||+|.+. .++.+
T Consensus 47 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~---~d~~~~~~~~~~~D~i~~~~~~~~~ 120 (195)
T 3cgg_A 47 GAKILDAGCGQGRIGGYLSKQGH---DVLGTDLDPILIDYAKQDFPEARWVV---GDLSVDQISETDFDLIVSAGNVMGF 120 (195)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCTTSEEEE---CCTTTSCCCCCCEEEEEECCCCGGG
T ss_pred CCeEEEECCCCCHHHHHHHHCCC---cEEEEcCCHHHHHHHHHhCCCCcEEE---cccccCCCCCCceeEEEECCcHHhh
Confidence 45899999999999999998875 89999999899998888742 23333 22222 44 899999998 56766
Q ss_pred CCCCCCHHHHHHHhhhhccCCcEEEEEcChH---HHHHHHHHHHhCCCeeEEeecC--CCC---CCcceEEEEEec
Q 006905 545 YKDRCETEDILLEMDRILRPEGGVIFRDDVD---ELVKVKRIIDALKWQSQIVDHE--DGP---LEREKLLFAVKL 612 (626)
Q Consensus 545 ~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~~---~~~~~~~~~~~l~w~~~~~~~e--~~~---~~~e~~l~~~K~ 612 (626)
... -+...+|.++.|+|+|||.+++..... ....+.++++...+++...... ..+ ..+.-+++++|+
T Consensus 121 ~~~-~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~v~~k~ 195 (195)
T 3cgg_A 121 LAE-DGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFESWDLKPFVQGSEFLVAVFTKK 195 (195)
T ss_dssp SCH-HHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEESSTTCCBCCTTCSEEEEEEEEC
T ss_pred cCh-HHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeecccccCcCCCCCcEEEEEEecC
Confidence 532 245789999999999999999975432 4677888888888887644222 111 234557777774
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.9e-09 Score=101.15 Aligned_cols=110 Identities=9% Similarity=0.104 Sum_probs=88.2
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceec-cccccCCCCC-Cccceeeeccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYT-NWCEAMSTYP-RTYDLIHADSV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~-~~~e~~~~yp-~t~Dlih~~~~ 541 (626)
-.+|||+|||.|.++..|++.+. +|+.+|.++.+++.+.++ |+ +.+++ |+.+ .+| .+||+|.++.+
T Consensus 36 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~---~~~~~~~D~i~~~~~ 109 (183)
T 2yxd_A 36 DDVVVDVGCGSGGMTVEIAKRCK---FVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED---VLDKLEFNKAFIGGT 109 (183)
T ss_dssp TCEEEEESCCCSHHHHHHHTTSS---EEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH---HGGGCCCSEEEECSC
T ss_pred CCEEEEeCCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc---cccCCCCcEEEECCc
Confidence 45899999999999999998544 889999998999988876 33 33333 3333 344 79999999766
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEEc-ChHHHHHHHHHHHhCCCeeEEe
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFRD-DVDELVKVKRIIDALKWQSQIV 594 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d-~~~~~~~~~~~~~~l~w~~~~~ 594 (626)
.++..+|.++.|+ |||.+++.+ ..+...++.+.++...|++..+
T Consensus 110 -------~~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 154 (183)
T 2yxd_A 110 -------KNIEKIIEILDKK--KINHIVANTIVLENAAKIINEFESRGYNVDAV 154 (183)
T ss_dssp -------SCHHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred -------ccHHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcCCeEEEE
Confidence 4678999999999 999999987 5567888888999988988865
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.95 E-value=3.2e-09 Score=104.40 Aligned_cols=138 Identities=16% Similarity=0.078 Sum_probs=99.0
Q ss_pred ceeEEeccCc-hhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHh----cc-cceeccccccCCCCC-Cccceeeeccc
Q 006905 470 YRNILDMNAH-LGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYER----GL-VGTYTNWCEAMSTYP-RTYDLIHADSV 541 (626)
Q Consensus 470 ~r~vlD~g~g-~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~r----gl-i~~~~~~~e~~~~yp-~t~Dlih~~~~ 541 (626)
-.+|||+||| .|.++..|++. +. +|+.+|.++.+++.+.++ |+ +.+++.-.+.+..+| .+||+|.++-.
T Consensus 56 ~~~vLDlG~G~~G~~~~~la~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp 132 (230)
T 3evz_A 56 GEVALEIGTGHTAMMALMAEKFFNC---KVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPP 132 (230)
T ss_dssp SCEEEEECCTTTCHHHHHHHHHHCC---EEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCC
T ss_pred CCEEEEcCCCHHHHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCC
Confidence 4679999999 99999999887 44 799999999999988765 33 334432122355666 89999999866
Q ss_pred cccCCC----------------CCCHHHHHHHhhhhccCCcEEEEE--cChHHHHHHHHHHHhCCCeeEEeecCCCCCCc
Q 006905 542 FSLYKD----------------RCETEDILLEMDRILRPEGGVIFR--DDVDELVKVKRIIDALKWQSQIVDHEDGPLER 603 (626)
Q Consensus 542 f~~~~~----------------~c~~~~~l~E~dRiLRPgG~~i~~--d~~~~~~~~~~~~~~l~w~~~~~~~e~~~~~~ 603 (626)
|..... ...+..+|.++.|+|||||++++. ...+....+.+.++...|++.......|. .-
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~g~-~~ 211 (230)
T 3evz_A 133 YYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKDIKFKVGT-RW 211 (230)
T ss_dssp CC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEEEECCCC--C
T ss_pred CcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEEEEecCCC-eE
Confidence 654322 111467999999999999999984 33466788889999999988876655443 33
Q ss_pred ceEEEEEe
Q 006905 604 EKLLFAVK 611 (626)
Q Consensus 604 e~~l~~~K 611 (626)
-.+|+.+|
T Consensus 212 ~~~l~f~~ 219 (230)
T 3evz_A 212 RHSLIFFK 219 (230)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEec
Confidence 45666655
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=2.3e-09 Score=113.60 Aligned_cols=100 Identities=20% Similarity=0.264 Sum_probs=73.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCCCCCCCeeEEEeccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLPYPSRAFDMAHCSRC 284 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lpf~d~sFDlV~~~~~ 284 (626)
...+|||||||+|.++..++++ .++++|+ +..+..+..+ ....++ .+.+..+|... +++. .||+|++..+
T Consensus 182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~v 257 (374)
T 1qzz_A 182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRR-FADAGLADRVTVAEGDFFK-PLPV-TADVVLLSFV 257 (374)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHH-HHHTTCTTTEEEEECCTTS-CCSC-CEEEEEEESC
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHH-HHhcCCCCceEEEeCCCCC-cCCC-CCCEEEEecc
Confidence 3569999999999999999875 4666776 5444333322 223344 47777777644 4443 3999999999
Q ss_pred cccccccH-HHHHHHHHhcccCCeEEEEEeC
Q 006905 285 LIPWNQFG-GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 285 l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+++|.+.. ..+|+++.++|||||++++...
T Consensus 258 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 258 LLNWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 98887643 5899999999999999999765
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=98.95 E-value=1.5e-09 Score=111.04 Aligned_cols=99 Identities=13% Similarity=0.117 Sum_probs=77.8
Q ss_pred CceeEEeccCchhhHhhhhhCC---CeEEEEeccCccCcccHHHHHHhcc-----cceeccccccCCCCCCccceeeecc
Q 006905 469 RYRNILDMNAHLGGFAAALIDF---PVWVMNVVPAEAKINTLGVIYERGL-----VGTYTNWCEAMSTYPRTYDLIHADS 540 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~---~v~~mnv~~~~~~~~~l~~~~~rgl-----i~~~~~~~e~~~~yp~t~Dlih~~~ 540 (626)
.-.+|||+|||+|.++..|++. +. +|+.+|.++.+++.+.++-- +....+=.+.+ +++.+||+|++..
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~ 97 (284)
T 3gu3_A 22 KPVHIVDYGCGYGYLGLVLMPLLPEGS---KYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEI-ELNDKYDIAICHA 97 (284)
T ss_dssp SCCEEEEETCTTTHHHHHHTTTSCTTC---EEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTC-CCSSCEEEEEEES
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhc-CcCCCeeEEEECC
Confidence 3578999999999999999887 34 78999999899998887621 22333212222 2358999999999
Q ss_pred ccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh
Q 006905 541 VFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV 574 (626)
Q Consensus 541 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~ 574 (626)
++.+.. +.+.+|.++.|+|||||++++.+..
T Consensus 98 ~l~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 98 FLLHMT---TPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp CGGGCS---SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hhhcCC---CHHHHHHHHHHHcCCCCEEEEEecc
Confidence 999886 4589999999999999999998654
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.1e-09 Score=110.92 Aligned_cols=142 Identities=8% Similarity=-0.011 Sum_probs=95.2
Q ss_pred CceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc-----c----------------------------
Q 006905 469 RYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG-----L---------------------------- 515 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg-----l---------------------------- 515 (626)
.-.+|||+|||+|.++..++..++ -+|+.+|.++.|++.+.++- -
T Consensus 55 ~g~~vLDiGCG~G~~~~~~~~~~~--~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T 2a14_A 55 QGDTLIDIGSGPTIYQVLAACDSF--QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 132 (263)
T ss_dssp CEEEEEESSCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCceEEEeCCCccHHHHHHHHhhh--cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence 356799999999999888888875 37999999999999876531 0
Q ss_pred --cc-eec-cccc--cCCCC-CCccceeeeccccccC-CCCCCHHHHHHHhhhhccCCcEEEEEcChH------------
Q 006905 516 --VG-TYT-NWCE--AMSTY-PRTYDLIHADSVFSLY-KDRCETEDILLEMDRILRPEGGVIFRDDVD------------ 575 (626)
Q Consensus 516 --i~-~~~-~~~e--~~~~y-p~t~Dlih~~~~f~~~-~~~c~~~~~l~E~dRiLRPgG~~i~~d~~~------------ 575 (626)
|. ++. |..+ .+... ..+||+|.|..++.+. .+.-++..+|.+|.|+|||||+|++++...
T Consensus 133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~ 212 (263)
T 2a14_A 133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFS 212 (263)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEee
Confidence 10 111 2222 11112 2699999999999874 333356789999999999999999985211
Q ss_pred ----HHHHHHHHHHhCCCeeEEeecC---CCC----CCcceEEEEEec
Q 006905 576 ----ELVKVKRIIDALKWQSQIVDHE---DGP----LEREKLLFAVKL 612 (626)
Q Consensus 576 ----~~~~~~~~~~~l~w~~~~~~~e---~~~----~~~e~~l~~~K~ 612 (626)
..+.+.+++..-..++.....- ..+ ....-+++|+|.
T Consensus 213 ~~~~~~~~l~~~l~~aGF~i~~~~~~~~~~~~~~~~~~~~~~~~a~K~ 260 (263)
T 2a14_A 213 CVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKK 260 (263)
T ss_dssp CCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEEC
T ss_pred ccccCHHHHHHHHHHCCCEEEEEeecccccccccCCCCceEEEEEEec
Confidence 3557777777766665432211 000 113346788885
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=98.95 E-value=3.5e-09 Score=104.43 Aligned_cols=94 Identities=18% Similarity=0.314 Sum_probs=75.5
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-----cceeccccccCCC--CCCccceeeecc-cc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-----VGTYTNWCEAMST--YPRTYDLIHADS-VF 542 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-----i~~~~~~~e~~~~--yp~t~Dlih~~~-~f 542 (626)
.+|||+|||.|.++..|++. .+|+.+|.++.+++.+.++.- +...+ ..+.. ++.+||+|.+.. ++
T Consensus 35 ~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~fD~v~~~~~~~ 107 (243)
T 3d2l_A 35 KRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETNRHVDFWV---QDMRELELPEPVDAITILCDSL 107 (243)
T ss_dssp CEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTTCCCEEEE---CCGGGCCCSSCEEEEEECTTGG
T ss_pred CeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcCCceEEEE---cChhhcCCCCCcCEEEEeCCch
Confidence 68999999999999999988 389999999999999887632 23333 22222 358999999986 88
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
.+..+..+...+|.++.|+|||||.+++.
T Consensus 108 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 136 (243)
T 3d2l_A 108 NYLQTEADVKQTFDSAARLLTDGGKLLFD 136 (243)
T ss_dssp GGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 88765556778999999999999999983
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.5e-09 Score=114.56 Aligned_cols=113 Identities=12% Similarity=0.078 Sum_probs=80.6
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCC
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYP 272 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~ 272 (626)
..+.+.+.+.... ..+|||+|||+|.++..++++ .++++|+++.++..+..+ ....++...+...|... +.
T Consensus 184 ~~~~ll~~l~~~~--~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~-~~~~~~~~~~~~~d~~~--~~ 258 (343)
T 2pjd_A 184 GSQLLLSTLTPHT--KGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRAT-LAANGVEGEVFASNVFS--EV 258 (343)
T ss_dssp HHHHHHHHSCTTC--CSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHH-HHHTTCCCEEEECSTTT--TC
T ss_pred HHHHHHHhcCcCC--CCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHHhCCCCEEEEccccc--cc
Confidence 3344555553222 448999999999999998875 589999987655544433 33456666666666544 34
Q ss_pred CCCeeEEEeccccccc----cccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 273 SRAFDMAHCSRCLIPW----NQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 273 d~sFDlV~~~~~l~h~----~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+++||+|+++..+++. ......++.++.|+|||||.+++..+
T Consensus 259 ~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 304 (343)
T 2pjd_A 259 KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (343)
T ss_dssp CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence 6799999999988541 22337899999999999999999864
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=98.95 E-value=3.8e-09 Score=110.95 Aligned_cols=114 Identities=15% Similarity=0.157 Sum_probs=81.7
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccC
Q 006905 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERL 269 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~L 269 (626)
..|.+.|.+.+.... +.+|||||||+|.++..++++ .|+++|+++ ++.. +.+.+...+. .+.+..++...+
T Consensus 24 ~~y~~ai~~~~~~~~--~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~-~~~~-a~~~~~~~~~~~~i~~~~~d~~~~ 99 (328)
T 1g6q_1 24 LSYRNAIIQNKDLFK--DKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEM-AKELVELNGFSDKITLLRGKLEDV 99 (328)
T ss_dssp HHHHHHHHHHHHHHT--TCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHH-HHHHHHHTTCTTTEEEEESCTTTS
T ss_pred HHHHHHHHhhHhhcC--CCEEEEecCccHHHHHHHHHCCCCEEEEEChHH-HHHH-HHHHHHHcCCCCCEEEEECchhhc
Confidence 344445544444333 458999999999999998886 588999984 4433 3344445554 367788888888
Q ss_pred CCCCCCeeEEEecccccc--ccccHHHHHHHHHhcccCCeEEEEE
Q 006905 270 PYPSRAFDMAHCSRCLIP--WNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 270 pf~d~sFDlV~~~~~l~h--~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
++++++||+|++....++ .......++.++.|+|||||.++..
T Consensus 100 ~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~~ 144 (328)
T 1g6q_1 100 HLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPD 144 (328)
T ss_dssp CCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred cCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEEe
Confidence 888889999999754322 2334578999999999999999843
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=98.94 E-value=1e-09 Score=108.36 Aligned_cols=98 Identities=14% Similarity=0.211 Sum_probs=78.4
Q ss_pred CceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc---cceeccccccCCCCC-Cccceeeecccccc
Q 006905 469 RYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL---VGTYTNWCEAMSTYP-RTYDLIHADSVFSL 544 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl---i~~~~~~~e~~~~yp-~t~Dlih~~~~f~~ 544 (626)
.-.+|||+|||.|.++..|++.+.- +|+.+|.++.+++.+.++.- +...+.-.+.+. +| .+||+|.+..++.+
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~ 119 (243)
T 3bkw_A 43 GGLRIVDLGCGFGWFCRWAHEHGAS--YVLGLDLSEKMLARARAAGPDTGITYERADLDKLH-LPQDSFDLAYSSLALHY 119 (243)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCC-CCTTCEEEEEEESCGGG
T ss_pred CCCEEEEEcCcCCHHHHHHHHCCCC--eEEEEcCCHHHHHHHHHhcccCCceEEEcChhhcc-CCCCCceEEEEeccccc
Confidence 3568999999999999999988642 78899999999999998863 233332122222 44 89999999999988
Q ss_pred CCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 545 YKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 545 ~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
.. +...+|.++.|+|||||.+++.+
T Consensus 120 ~~---~~~~~l~~~~~~L~pgG~l~~~~ 144 (243)
T 3bkw_A 120 VE---DVARLFRTVHQALSPGGHFVFST 144 (243)
T ss_dssp CS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cc---hHHHHHHHHHHhcCcCcEEEEEe
Confidence 76 56899999999999999999975
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=5.6e-10 Score=113.26 Aligned_cols=121 Identities=13% Similarity=0.080 Sum_probs=89.0
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhccc--------------------ceeccccccCCCC
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLV--------------------GTYTNWCEAMSTY 529 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli--------------------~~~~~~~e~~~~y 529 (626)
-..|||+|||.|.++.+|++++. +|+++|.++.+++.+.++.-. ..+.-.|..+..+
T Consensus 69 ~~~vLD~GCG~G~~~~~La~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l 145 (252)
T 2gb4_A 69 GLRVFFPLCGKAIEMKWFADRGH---TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL 145 (252)
T ss_dssp SCEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred CCeEEEeCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence 35799999999999999999986 899999999999999765311 1112223444444
Q ss_pred C----CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEE-EcC-----------hHHHHHHHHHHHhCCCeeEE
Q 006905 530 P----RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIF-RDD-----------VDELVKVKRIIDALKWQSQI 593 (626)
Q Consensus 530 p----~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~-~d~-----------~~~~~~~~~~~~~l~w~~~~ 593 (626)
| .+||+|.+..+|.+... .+.+.++.||.|+|||||.+++ +-. .-..+.++.++.. .|++..
T Consensus 146 ~~~~~~~FD~V~~~~~l~~l~~-~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~v~~ 223 (252)
T 2gb4_A 146 PRANIGKFDRIWDRGALVAINP-GDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCSMQC 223 (252)
T ss_dssp GGGCCCCEEEEEESSSTTTSCG-GGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEEEEE
T ss_pred CcccCCCEEEEEEhhhhhhCCH-HHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeEEEE
Confidence 3 79999999988887753 4667899999999999999964 210 0124677777776 477764
Q ss_pred ee
Q 006905 594 VD 595 (626)
Q Consensus 594 ~~ 595 (626)
..
T Consensus 224 ~~ 225 (252)
T 2gb4_A 224 LE 225 (252)
T ss_dssp EE
T ss_pred Ee
Confidence 43
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=4.8e-10 Score=112.12 Aligned_cols=101 Identities=16% Similarity=0.146 Sum_probs=76.9
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-----cceec-cccccCCCCC-Cccceeeecccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-----VGTYT-NWCEAMSTYP-RTYDLIHADSVF 542 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-----i~~~~-~~~e~~~~yp-~t~Dlih~~~~f 542 (626)
-..|||+|||.|.++.+|++... -+|+.+|.++.+++.+.++.- +.++. +|-+-...+| .+||.|..+.+.
T Consensus 61 G~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~ 138 (236)
T 3orh_A 61 GGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP 138 (236)
T ss_dssp CEEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred CCeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeeee
Confidence 45799999999999999998754 378899999999999988653 22222 4544555677 899999876655
Q ss_pred ccCC--CCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 543 SLYK--DRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 543 ~~~~--~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
+... +.-+.+.++.|+.|||||||.|++-+
T Consensus 139 ~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 139 LSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp CBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred cccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence 5332 22345789999999999999999853
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=98.94 E-value=4.1e-10 Score=108.58 Aligned_cols=116 Identities=12% Similarity=0.051 Sum_probs=67.6
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCC
Q 006905 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLP 270 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lp 270 (626)
...++.+.+.+... .++.+|||+|||+|.++..+++. .++++|+++.++..+..+.. ..+..+.+..+|... +
T Consensus 15 ~~~~~~~~~~l~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~~~~~d~~~-~ 91 (215)
T 4dzr_A 15 EVLVEEAIRFLKRM-PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAE-RFGAVVDWAAADGIE-W 91 (215)
T ss_dssp HHHHHHHHHHHTTC-CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------CCHHHHHH-H
T ss_pred HHHHHHHHHHhhhc-CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHH-HhCCceEEEEcchHh-h
Confidence 33445555555321 33568999999999999998886 58889988865554333222 223345556666554 5
Q ss_pred CCC-----CCeeEEEecccccccccc-------------------------HHHHHHHHHhcccCCeE-EEEEe
Q 006905 271 YPS-----RAFDMAHCSRCLIPWNQF-------------------------GGIYLIEVDRVLRPGGY-WILSG 313 (626)
Q Consensus 271 f~d-----~sFDlV~~~~~l~h~~~~-------------------------~~~~L~Ei~RvLKPGG~-lvis~ 313 (626)
+++ ++||+|+++..+++.... ...++.++.++|||||+ +++..
T Consensus 92 ~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 165 (215)
T 4dzr_A 92 LIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEV 165 (215)
T ss_dssp HHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEEC
T ss_pred hhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 554 899999997655332210 05678899999999999 55553
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=98.93 E-value=5e-09 Score=102.38 Aligned_cols=110 Identities=8% Similarity=0.036 Sum_probs=84.3
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc---cceeccccccCCC-CC--Cccceeeec
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL---VGTYTNWCEAMST-YP--RTYDLIHAD 539 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~~~~e~~~~-yp--~t~Dlih~~ 539 (626)
-.+|||+|||+|.++..|++.+. .|+.+|.++.+++.+.++ |+ +.+++ ..+.. .+ ..||+|.+.
T Consensus 56 ~~~vLDlGcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~---~d~~~~~~~~~~~D~v~~~ 129 (204)
T 3njr_A 56 GELLWDIGGGSGSVSVEWCLAGG---RAITIEPRADRIENIQKNIDTYGLSPRMRAVQ---GTAPAALADLPLPEAVFIG 129 (204)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE---SCTTGGGTTSCCCSEEEEC
T ss_pred CCEEEEecCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEe---CchhhhcccCCCCCEEEEC
Confidence 46899999999999999998854 799999999999988776 33 23333 22222 22 579999985
Q ss_pred cccccCCCCCCHHHHHHHhhhhccCCcEEEEEc-ChHHHHHHHHHHHhCCCeeEE
Q 006905 540 SVFSLYKDRCETEDILLEMDRILRPEGGVIFRD-DVDELVKVKRIIDALKWQSQI 593 (626)
Q Consensus 540 ~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d-~~~~~~~~~~~~~~l~w~~~~ 593 (626)
..+ +.+ +|.++.|+|||||.+++.. ..+...++.+.++...+++.-
T Consensus 130 ~~~-------~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~i~~ 176 (204)
T 3njr_A 130 GGG-------SQA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARHGGQLLR 176 (204)
T ss_dssp SCC-------CHH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHHCSEEEE
T ss_pred Ccc-------cHH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhCCCcEEE
Confidence 532 456 9999999999999999975 456778888888887777653
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.93 E-value=6.9e-10 Score=108.06 Aligned_cols=98 Identities=10% Similarity=0.115 Sum_probs=72.8
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIP 287 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h 287 (626)
..+|||+|||+|.++..++.. .++++|+++.++.-+..+ +...|+...+.+.|.... .+.++||+|.+..++|+
T Consensus 50 ~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~-~~~~g~~~~v~~~d~~~~-~~~~~~DvVLa~k~LHl 127 (200)
T 3fzg_A 50 VSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSI-IGKLKTTIKYRFLNKESD-VYKGTYDVVFLLKMLPV 127 (200)
T ss_dssp CSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHH-HHHSCCSSEEEEECCHHH-HTTSEEEEEEEETCHHH
T ss_pred CCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHH-HHhcCCCccEEEeccccc-CCCCCcChhhHhhHHHh
Confidence 558999999999999999654 688888877666544433 334566644444554333 35678999999999977
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEE
Q 006905 288 WNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 288 ~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
. ++....+.++.+.|||||+||--
T Consensus 128 L-~~~~~al~~v~~~L~pggvfISf 151 (200)
T 3fzg_A 128 L-KQQDVNILDFLQLFHTQNFVISF 151 (200)
T ss_dssp H-HHTTCCHHHHHHTCEEEEEEEEE
T ss_pred h-hhhHHHHHHHHHHhCCCCEEEEe
Confidence 7 65567777999999999988664
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.7e-09 Score=109.00 Aligned_cols=119 Identities=19% Similarity=0.290 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceeccccccCC
Q 006905 448 ELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMS 527 (626)
Q Consensus 448 ~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~ 527 (626)
..|+........++..+.. .-.+|||+|||.|.++..|++.+. +|+.+|.++.+++.+.++..-.....-.+.++
T Consensus 35 ~~~~~~~~~~~~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~ 109 (260)
T 2avn_A 35 PKWKLYHRLIGSFLEEYLK--NPCRVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGVKNVVEAKAEDLP 109 (260)
T ss_dssp HHHHHHHHHHHHHHHHHCC--SCCEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTCSCEEECCTTSCC
T ss_pred cchhHHHHHHHHHHHHhcC--CCCeEEEeCCCcCHHHHHHHHcCC---eEEEEeCCHHHHHHHHhhcCCCEEECcHHHCC
Confidence 4554333333444433222 245899999999999999999875 89999999999999999865112221112222
Q ss_pred CCC-CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh
Q 006905 528 TYP-RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV 574 (626)
Q Consensus 528 ~yp-~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~ 574 (626)
+| .+||+|.+..++.++.. +...+|.|+.|+|||||.+++....
T Consensus 110 -~~~~~fD~v~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 110 -FPSGAFEAVLALGDVLSYVE--NKDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp -SCTTCEEEEEECSSHHHHCS--CHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred -CCCCCEEEEEEcchhhhccc--cHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 44 89999999876665532 3789999999999999999997543
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=98.93 E-value=9.2e-10 Score=112.48 Aligned_cols=118 Identities=10% Similarity=0.024 Sum_probs=84.9
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceec-cccccC----CCCCCccceeeecccccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYT-NWCEAM----STYPRTYDLIHADSVFSL 544 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~-~~~e~~----~~yp~t~Dlih~~~~f~~ 544 (626)
-.+|||+|||+|.++..|++++. .|+.+|.++.|++.+.++.--..++ +|.+.- ...+.+||+|.|+.++.+
T Consensus 46 g~~VLDlGcGtG~~a~~La~~g~---~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~ 122 (261)
T 3iv6_A 46 GSTVAVIGASTRFLIEKALERGA---SVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDFVLNDRLINR 122 (261)
T ss_dssp TCEEEEECTTCHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSEEEEESCGGG
T ss_pred cCEEEEEeCcchHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCccEEEEhhhhHh
Confidence 46899999999999999999875 7999999999999999875322122 232211 122479999999999987
Q ss_pred CCCCCCHHHHHHHhhhhccCCcEEEEEcCh----HHHHHHHHHHHhCCCeeE
Q 006905 545 YKDRCETEDILLEMDRILRPEGGVIFRDDV----DELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 545 ~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~----~~~~~~~~~~~~l~w~~~ 592 (626)
+... +...+|.+|.|+| |||.++++-.. .....++.....-.|...
T Consensus 123 ~~~~-~~~~~l~~l~~lL-PGG~l~lS~~~g~~~~d~~~l~~~~~~g~~~~~ 172 (261)
T 3iv6_A 123 FTTE-EARRACLGMLSLV-GSGTVRASVKLGFYDIDLKLIEYGEQSGTLAKF 172 (261)
T ss_dssp SCHH-HHHHHHHHHHHHH-TTSEEEEEEEBSCCHHHHHHHHHHHTTTCHHHH
T ss_pred CCHH-HHHHHHHHHHHhC-cCcEEEEEeccCcccccHHHHHHHHhcCCeeee
Confidence 7532 4577999999999 99999998432 123334444455555443
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.93 E-value=3e-09 Score=111.87 Aligned_cols=100 Identities=17% Similarity=0.189 Sum_probs=75.9
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCC-CCCCCeeEEEeccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLP-YPSRAFDMAHCSRC 284 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lp-f~d~sFDlV~~~~~ 284 (626)
..+|||||||+|.++..++++ .++++|+ +..+..+. +.....+. .+.+..+|....+ +..+.||+|++..+
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~v 257 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAAR-KTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDC 257 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHH-HHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESC
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHH-HHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEecc
Confidence 569999999999999999875 5777888 54444333 33334444 3677777876655 23456999999999
Q ss_pred cccccccH-HHHHHHHHhcccCCeEEEEEe
Q 006905 285 LIPWNQFG-GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 285 l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+|+|.+.. ..+|+++.++|||||++++..
T Consensus 258 lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e 287 (352)
T 3mcz_A 258 LHYFDAREAREVIGHAAGLVKPGGALLILT 287 (352)
T ss_dssp GGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 98887532 789999999999999999975
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=5.8e-09 Score=102.46 Aligned_cols=109 Identities=16% Similarity=0.078 Sum_probs=76.5
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcC------CCeEEEEccccc
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERG------VPALIGVLAAER 268 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg------~~~~~~v~d~~~ 268 (626)
.+.+.+.....++.+|||||||+|.++..|++. .++++|+++..+..+..+.. ..+ ..+.+...|...
T Consensus 66 ~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~v~~~~~d~~~ 144 (226)
T 1i1n_A 66 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVR-KDDPTLLSSGRVQLVVGDGRM 144 (226)
T ss_dssp HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHH-HHCTHHHHTSSEEEEESCGGG
T ss_pred HHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-hhcccccCCCcEEEEECCccc
Confidence 444454422334569999999999999888764 58889988765554433332 222 246777777766
Q ss_pred CCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 006905 269 LPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPPI 316 (626)
Q Consensus 269 Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~pp~ 316 (626)
.+..+++||+|++...+++. +.++.++|||||.++++..+.
T Consensus 145 ~~~~~~~fD~i~~~~~~~~~-------~~~~~~~LkpgG~lv~~~~~~ 185 (226)
T 1i1n_A 145 GYAEEAPYDAIHVGAAAPVV-------PQALIDQLKPGGRLILPVGPA 185 (226)
T ss_dssp CCGGGCCEEEEEECSBBSSC-------CHHHHHTEEEEEEEEEEESCT
T ss_pred CcccCCCcCEEEECCchHHH-------HHHHHHhcCCCcEEEEEEecC
Confidence 65557789999998877443 367899999999999987543
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.4e-09 Score=108.38 Aligned_cols=114 Identities=15% Similarity=0.221 Sum_probs=80.5
Q ss_pred HHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc----c-cceecccccc
Q 006905 451 KKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG----L-VGTYTNWCEA 525 (626)
Q Consensus 451 ~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg----l-i~~~~~~~e~ 525 (626)
...+.....++..+.. ....+|||+|||.|.++..|++.+. +|+.+|.++.+++.+.++. + +..++ ..
T Consensus 24 ~~~~~~~~~~~~~~~~-~~~~~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~---~d 96 (252)
T 1wzn_A 24 KAEIDFVEEIFKEDAK-REVRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQ---GD 96 (252)
T ss_dssp HHHHHHHHHHHHHTCS-SCCCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEE---SC
T ss_pred HHHHHHHHHHHHHhcc-cCCCEEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEE---CC
Confidence 3334444455544433 3356899999999999999999876 8999999999999887753 2 23333 22
Q ss_pred CCC--CCCccceeeecc-ccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 526 MST--YPRTYDLIHADS-VFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 526 ~~~--yp~t~Dlih~~~-~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
+.. ++.+||+|.+.. .+.+. +.-+...+|.++.|+|||||.+++.-
T Consensus 97 ~~~~~~~~~fD~v~~~~~~~~~~-~~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 97 VLEIAFKNEFDAVTMFFSTIMYF-DEEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp GGGCCCCSCEEEEEECSSGGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhcccCCCccEEEEcCCchhcC-CHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 222 358999999853 33333 22356789999999999999999854
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.6e-09 Score=104.77 Aligned_cols=115 Identities=18% Similarity=0.255 Sum_probs=88.9
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceeccccccCCCC-CCccceeeecccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYTNWCEAMSTY-PRTYDLIHADSVF 542 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~~~~e~~~~y-p~t~Dlih~~~~f 542 (626)
-.+|||+|||.|.++..|++.+. .+|+.+|.++.+++.+.++ |+ +.+.+ ..+..+ +.+||+|.++.++
T Consensus 61 ~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~---~d~~~~~~~~fD~i~~~~~~ 135 (205)
T 3grz_A 61 PLTVADVGTGSGILAIAAHKLGA--KSVLATDISDESMTAAEENAALNGIYDIALQK---TSLLADVDGKFDLIVANILA 135 (205)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCCCEEEE---SSTTTTCCSCEEEEEEESCH
T ss_pred CCEEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEe---ccccccCCCCceEEEECCcH
Confidence 35799999999999999998764 3789999999999988876 43 23333 333334 4999999998766
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEEEcC-hHHHHHHHHHHHhCCCeeEEee
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIFRDD-VDELVKVKRIIDALKWQSQIVD 595 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~-~~~~~~~~~~~~~l~w~~~~~~ 595 (626)
.+ +..+|.++.|+|||||++++.+. .+....+.+++....++.....
T Consensus 136 ~~------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~~~~ 183 (205)
T 3grz_A 136 EI------LLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQIDLKM 183 (205)
T ss_dssp HH------HHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEEEEEE
T ss_pred HH------HHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCceEEee
Confidence 43 47889999999999999999753 3457778888888888776443
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=98.92 E-value=6.5e-10 Score=115.69 Aligned_cols=103 Identities=9% Similarity=0.071 Sum_probs=75.3
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-cc-----------eecccc------ccCC-CCC
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-VG-----------TYTNWC------EAMS-TYP 530 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-i~-----------~~~~~~------e~~~-~yp 530 (626)
-.+|||+|||.|+....++..+.. +|+++|.++.|++.|.+|.- .+ .....+ +.+. .+|
T Consensus 49 ~~~VLDlGCG~G~~l~~~~~~~~~--~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 49 KRKVLAIDFGNGADLEKYFYGEIA--LLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp CCEEEETTCTTTTTHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCeEEEEecCCcHhHHHHHhcCCC--eEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 457999999999877766655533 79999999999999998742 11 111111 2222 355
Q ss_pred -CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh
Q 006905 531 -RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV 574 (626)
Q Consensus 531 -~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~ 574 (626)
++||+|-|..++.+.-+.-+...+|.|+.|+|||||+||++...
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 89999999888765422235689999999999999999998654
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.92 E-value=4.3e-09 Score=101.20 Aligned_cols=90 Identities=17% Similarity=0.180 Sum_probs=67.4
Q ss_pred CCEEEEeCCCCchHHHHHhhC------CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCC---------------
Q 006905 212 IRTAIDTGCGVASWGAYLLSR------NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLP--------------- 270 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~------~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lp--------------- 270 (626)
+.+|||+|||+|.++..++++ .++++|+++... ...+.+..+|...++
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~-----------~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~ 91 (201)
T 2plw_A 23 NKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDP-----------IPNVYFIQGEIGKDNMNNIKNINYIDNMNN 91 (201)
T ss_dssp TEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCC-----------CTTCEEEECCTTTTSSCCC-----------
T ss_pred CCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCC-----------CCCceEEEccccchhhhhhccccccccccc
Confidence 458999999999999998864 488999987311 123566677776665
Q ss_pred ----------CCCCCeeEEEecccccccc----ccH-------HHHHHHHHhcccCCeEEEEEe
Q 006905 271 ----------YPSRAFDMAHCSRCLIPWN----QFG-------GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 271 ----------f~d~sFDlV~~~~~l~h~~----~~~-------~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+++++||+|+|..++ |+. .+. ..++.++.++|||||.|++..
T Consensus 92 ~~~~~~~~~~~~~~~fD~v~~~~~~-~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 154 (201)
T 2plw_A 92 NSVDYKLKEILQDKKIDIILSDAAV-PCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKM 154 (201)
T ss_dssp CHHHHHHHHHHTTCCEEEEEECCCC-CCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhHHHHHhhcCCCcccEEEeCCCc-CCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 567799999998876 332 111 137899999999999999964
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=4.4e-09 Score=107.84 Aligned_cols=126 Identities=10% Similarity=0.033 Sum_probs=85.8
Q ss_pred CCceecCCCCCCCCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--C-cEEEeCCccchHHHHHHHHHH
Q 006905 178 GDRFRFPGGGTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--N-IITMSFAPRDTHEAQVQFALE 254 (626)
Q Consensus 178 ge~~~Fp~ggt~F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~-V~avdis~~dls~a~i~~A~e 254 (626)
|-.|.+.-....|..........+.+++ . ++.+|||+|||+|.++..+++. . |+++|+++.++..+.. .+..
T Consensus 96 g~~f~~d~~~~~f~~~~~~~~~~l~~~~--~--~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~-n~~~ 170 (278)
T 2frn_A 96 GIKYKLDVAKIMFSPANVKERVRMAKVA--K--PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVE-NIHL 170 (278)
T ss_dssp TEEEEEETTTSCCCGGGHHHHHHHHHHC--C--TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHH-HHHH
T ss_pred CEEEEEEccceeEcCCcHHHHHHHHHhC--C--CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHH-HHHH
Confidence 3334443223344444334444455443 2 2458999999999999999875 3 8899998866554443 3444
Q ss_pred cCCC--eEEEEcccccCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 255 RGVP--ALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 255 rg~~--~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+++. +.+..+|+..++. +++||+|++.... ....++.++.++|||||.+++...
T Consensus 171 n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p~-----~~~~~l~~~~~~LkpgG~l~~~~~ 226 (278)
T 2frn_A 171 NKVEDRMSAYNMDNRDFPG-ENIADRILMGYVV-----RTHEFIPKALSIAKDGAIIHYHNT 226 (278)
T ss_dssp TTCTTTEEEECSCTTTCCC-CSCEEEEEECCCS-----SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred cCCCceEEEEECCHHHhcc-cCCccEEEECCch-----hHHHHHHHHHHHCCCCeEEEEEEe
Confidence 5554 6678888877776 7789999996532 235789999999999999999753
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=98.92 E-value=3.6e-09 Score=102.26 Aligned_cols=96 Identities=13% Similarity=-0.016 Sum_probs=71.4
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEcccccCCCCCCCeeEEEeccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAERLPYPSRAFDMAHCSRCLI 286 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~~Lpf~d~sFDlV~~~~~l~ 286 (626)
+.+|||+|||+|.++..++.. .++++|+++..+..+.. .+...+.. +.+...|...++ ++++||+|+++. +
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~-~- 141 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQ-VQHELKLENIEPVQSRVEEFP-SEPPFDGVISRA-F- 141 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHH-HHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSC-S-
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCCeEEEecchhhCC-ccCCcCEEEEec-c-
Confidence 458999999999999888864 68888887755543332 33344543 677777776665 457899999854 2
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 287 PWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 287 h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.+...++.++.++|+|||++++...
T Consensus 142 ---~~~~~~l~~~~~~L~~gG~l~~~~~ 166 (207)
T 1jsx_A 142 ---ASLNDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp ---SSHHHHHHHHTTSEEEEEEEEEEES
T ss_pred ---CCHHHHHHHHHHhcCCCcEEEEEeC
Confidence 2357899999999999999999843
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=98.91 E-value=5.6e-09 Score=104.88 Aligned_cols=110 Identities=14% Similarity=0.011 Sum_probs=75.2
Q ss_pred HHHHhhc-cCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCC---
Q 006905 200 DIGKLIN-LNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLP--- 270 (626)
Q Consensus 200 ~L~~ll~-l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lp--- 270 (626)
.+...+. +...++.+|||+|||+|.++..+++. .|+++|+++.++.. .++.++++ .++.+.++|+....
T Consensus 64 ~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~-l~~~a~~r-~nv~~i~~Da~~~~~~~ 141 (232)
T 3id6_C 64 AILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRE-LLLVAQRR-PNIFPLLADARFPQSYK 141 (232)
T ss_dssp HHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHH-HHHHHHHC-TTEEEEECCTTCGGGTT
T ss_pred HHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHH-HHHHhhhc-CCeEEEEcccccchhhh
Confidence 4444443 23334669999999999999988875 59999998865432 44555554 35677777765432
Q ss_pred CCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 271 YPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 271 f~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
...++||+|++..+. ++....++..+.++|||||.|+++..
T Consensus 142 ~~~~~~D~I~~d~a~---~~~~~il~~~~~~~LkpGG~lvisik 182 (232)
T 3id6_C 142 SVVENVDVLYVDIAQ---PDQTDIAIYNAKFFLKVNGDMLLVIK 182 (232)
T ss_dssp TTCCCEEEEEECCCC---TTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccccceEEEEecCCC---hhHHHHHHHHHHHhCCCCeEEEEEEc
Confidence 224689999998654 23223445566779999999999854
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=5.1e-09 Score=110.48 Aligned_cols=100 Identities=19% Similarity=0.307 Sum_probs=73.6
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCCCCCCCeeEEEecccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lpf~d~sFDlV~~~~~l 285 (626)
..+|||||||+|.++..++++ .++++|+ +..+..+.. .....++ .+.+..+|... +++. .||+|++..++
T Consensus 184 ~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~~~vl 259 (360)
T 1tw3_A 184 VRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARS-YLKDEGLSDRVDVVEGDFFE-PLPR-KADAIILSFVL 259 (360)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHH-HHHHTTCTTTEEEEECCTTS-CCSS-CEEEEEEESCG
T ss_pred CcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHH-HHHhcCCCCceEEEeCCCCC-CCCC-CccEEEEcccc
Confidence 569999999999999998875 3556666 544443332 2333444 47777777544 3444 49999999999
Q ss_pred ccccccH-HHHHHHHHhcccCCeEEEEEeCC
Q 006905 286 IPWNQFG-GIYLIEVDRVLRPGGYWILSGPP 315 (626)
Q Consensus 286 ~h~~~~~-~~~L~Ei~RvLKPGG~lvis~pp 315 (626)
++|.+.. ..+|+++.++|||||++++..+.
T Consensus 260 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 260 LNWPDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp GGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 8887643 58999999999999999998653
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=6.8e-09 Score=104.93 Aligned_cols=160 Identities=16% Similarity=0.037 Sum_probs=108.3
Q ss_pred hhHHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHHHh----cc--cc
Q 006905 446 NSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIYER----GL--VG 517 (626)
Q Consensus 446 d~~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~~r----gl--i~ 517 (626)
..+.|.+++-.-..++..+.. ..-.+|||+|||.|..+..|+.. +. .|+.+|.++.++.++.++ |+ +.
T Consensus 58 ~~~~~~~~~~ds~~~l~~~~~-~~~~~vLDiG~G~G~~~i~la~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~l~~v~ 133 (249)
T 3g89_A 58 EEEVVVKHFLDSLTLLRLPLW-QGPLRVLDLGTGAGFPGLPLKIVRPEL---ELVLVDATRKKVAFVERAIEVLGLKGAR 133 (249)
T ss_dssp HHHHHHHHHHHHHGGGGSSCC-CSSCEEEEETCTTTTTHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHTCSSEE
T ss_pred HHHHhhceeeechhhhccccc-CCCCEEEEEcCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHhCCCceE
Confidence 456787776554444443332 34568999999999999888754 33 789999999999887765 44 44
Q ss_pred eeccccccCCC---CCCccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC---hHHHHHHHHHHHhCCCee
Q 006905 518 TYTNWCEAMST---YPRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDD---VDELVKVKRIIDALKWQS 591 (626)
Q Consensus 518 ~~~~~~e~~~~---yp~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~---~~~~~~~~~~~~~l~w~~ 591 (626)
+++.-.+.+.. ++.+||+|.|..+ .+++.++.++.|+|||||++++-.. .+.+..++..++.+.++.
T Consensus 134 ~~~~d~~~~~~~~~~~~~fD~I~s~a~-------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~ 206 (249)
T 3g89_A 134 ALWGRAEVLAREAGHREAYARAVARAV-------APLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRL 206 (249)
T ss_dssp EEECCHHHHTTSTTTTTCEEEEEEESS-------CCHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEE
T ss_pred EEECcHHHhhcccccCCCceEEEECCc-------CCHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeE
Confidence 55543344432 3489999998533 3678999999999999999998653 456677777788888876
Q ss_pred EEee-c-CCCCCCcceEEEEEecccCC
Q 006905 592 QIVD-H-EDGPLEREKLLFAVKLYWTA 616 (626)
Q Consensus 592 ~~~~-~-e~~~~~~e~~l~~~K~~w~~ 616 (626)
.-.. - -.+....-.+++.+|.=.++
T Consensus 207 ~~~~~~~~p~~~~~R~l~~~~k~~~t~ 233 (249)
T 3g89_A 207 GEVLALQLPLSGEARHLVVLEKTAPTP 233 (249)
T ss_dssp EEEEEEECTTTCCEEEEEEEEECSCCC
T ss_pred EEEEEeeCCCCCCcEEEEEEEeCCCCC
Confidence 5322 1 12222334566677755444
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=98.91 E-value=2.2e-09 Score=103.33 Aligned_cols=112 Identities=13% Similarity=0.106 Sum_probs=82.2
Q ss_pred eEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc----c-cceeccccccCCCCC-CccceeeeccccccC
Q 006905 472 NILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG----L-VGTYTNWCEAMSTYP-RTYDLIHADSVFSLY 545 (626)
Q Consensus 472 ~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg----l-i~~~~~~~e~~~~yp-~t~Dlih~~~~f~~~ 545 (626)
+|||+|||.|.++..|++.+. +|+.+|.++.+++.+.++. + +.++..-.+.+ .+| .+||+|.+. |.+.
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~--~~~~ 105 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGY---EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADF-DIVADAWEGIVSI--FCHL 105 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTC---EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTB-SCCTTTCSEEEEE--CCCC
T ss_pred CEEEECCCCCHhHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhc-CCCcCCccEEEEE--hhcC
Confidence 899999999999999999876 8999999999999888773 2 23333111222 244 899999984 4444
Q ss_pred CCCCCHHHHHHHhhhhccCCcEEEEEcCh-----------------HHHHHHHHHHHhCCCeeE
Q 006905 546 KDRCETEDILLEMDRILRPEGGVIFRDDV-----------------DELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 546 ~~~c~~~~~l~E~dRiLRPgG~~i~~d~~-----------------~~~~~~~~~~~~l~w~~~ 592 (626)
...+...+|.++.|+|||||.+++.+.. -....+++++. .|++.
T Consensus 106 -~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~ 166 (202)
T 2kw5_A 106 -PSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWL 166 (202)
T ss_dssp -CHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEE
T ss_pred -CHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEE
Confidence 2235678999999999999999998421 12566777766 67665
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.7e-09 Score=105.38 Aligned_cols=98 Identities=13% Similarity=0.148 Sum_probs=79.1
Q ss_pred CceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceec-cccccCCCCC-CccceeeeccccccCC
Q 006905 469 RYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYT-NWCEAMSTYP-RTYDLIHADSVFSLYK 546 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~-~~~e~~~~yp-~t~Dlih~~~~f~~~~ 546 (626)
.-.+|||+|||.|.++..|++.+. +|+.+|.++.+++.+.++.. ...+ |..+....++ .+||+|.+..++.+..
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~ 107 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIKENGT---RVSGIEAFPEAAEQAKEKLD-HVVLGDIETMDMPYEEEQFDCVIFGDVLEHLF 107 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHHTTTC---EEEEEESSHHHHHHHHTTSS-EEEESCTTTCCCCSCTTCEEEEEEESCGGGSS
T ss_pred CCCcEEEeCCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhCC-cEEEcchhhcCCCCCCCccCEEEECChhhhcC
Confidence 356899999999999999999874 89999999899998888763 3333 3222223455 8999999999998886
Q ss_pred CCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 547 DRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 547 ~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
+.+.+|.++.|+|||||++++...
T Consensus 108 ---~~~~~l~~~~~~L~~gG~l~~~~~ 131 (230)
T 3cc8_A 108 ---DPWAVIEKVKPYIKQNGVILASIP 131 (230)
T ss_dssp ---CHHHHHHHTGGGEEEEEEEEEEEE
T ss_pred ---CHHHHHHHHHHHcCCCCEEEEEeC
Confidence 458999999999999999999753
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=98.91 E-value=2.7e-09 Score=103.11 Aligned_cols=127 Identities=9% Similarity=0.073 Sum_probs=89.2
Q ss_pred eeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHHHh----cc--cceeccccccCCCCC--Cccceeeecc
Q 006905 471 RNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIYER----GL--VGTYTNWCEAMSTYP--RTYDLIHADS 540 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~~~~e~~~~yp--~t~Dlih~~~ 540 (626)
.+|||+|||.|.++..|+.. +. +|+.+|.++.+++.+.++ |+ +.+++ ..+..++ .+||+|.+..
T Consensus 67 ~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~---~d~~~~~~~~~~D~i~~~~ 140 (207)
T 1jsx_A 67 ERFIDVGTGPGLPGIPLSIVRPEA---HFTLLDSLGKRVRFLRQVQHELKLENIEPVQ---SRVEEFPSEPPFDGVISRA 140 (207)
T ss_dssp SEEEEETCTTTTTHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHTTCSSEEEEE---CCTTTSCCCSCEEEEECSC
T ss_pred CeEEEECCCCCHHHHHHHHHCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCeEEEe---cchhhCCccCCcCEEEEec
Confidence 47999999999999999864 33 789999998999888764 44 33333 3333333 7999999854
Q ss_pred ccccCCCCCCHHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHhCCCeeEEee--cCCCCCCcceEEEEEec
Q 006905 541 VFSLYKDRCETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQIVD--HEDGPLEREKLLFAVKL 612 (626)
Q Consensus 541 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~l~w~~~~~~--~e~~~~~~e~~l~~~K~ 612 (626)
+ .++..++.++.|+|+|||++++.........++++.+ .|+..... .-....+...+++++|.
T Consensus 141 ~-------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~k~ 205 (207)
T 1jsx_A 141 F-------ASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPE--EYQVESVVKLQVPALDGERHLVVIKAN 205 (207)
T ss_dssp S-------SSHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSCT--TEEEEEEEEEECC--CCEEEEEEEEEC
T ss_pred c-------CCHHHHHHHHHHhcCCCcEEEEEeCCCchHHHHHHhc--CCceeeeeeeccCCCCCceEEEEEEec
Confidence 2 3578999999999999999999876655566666665 67654311 11222245677777764
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=5.5e-09 Score=103.73 Aligned_cols=109 Identities=15% Similarity=0.138 Sum_probs=76.1
Q ss_pred HHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCCC
Q 006905 196 AYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLPY 271 (626)
Q Consensus 196 ~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lpf 271 (626)
.....+.+.+...+ +.+|||||||+|.++..|++. .++++|+++..+..+... ....+. .+.+...|. ..++
T Consensus 78 ~~~~~~~~~l~~~~--~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~-~~~~~~~~v~~~~~d~-~~~~ 153 (235)
T 1jg1_A 78 HMVAIMLEIANLKP--GMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRN-LERAGVKNVHVILGDG-SKGF 153 (235)
T ss_dssp HHHHHHHHHHTCCT--TCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHH-HHHTTCCSEEEEESCG-GGCC
T ss_pred HHHHHHHHhcCCCC--CCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHH-HHHcCCCCcEEEECCc-ccCC
Confidence 34455566664443 458999999999999998874 689999877554433332 223444 356666665 4455
Q ss_pred CCC-CeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 006905 272 PSR-AFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPP 315 (626)
Q Consensus 272 ~d~-sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~pp 315 (626)
++. .||+|++..+++++. .++.++|||||.+++..++
T Consensus 154 ~~~~~fD~Ii~~~~~~~~~-------~~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 154 PPKAPYDVIIVTAGAPKIP-------EPLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp GGGCCEEEEEECSBBSSCC-------HHHHHTEEEEEEEEEEECS
T ss_pred CCCCCccEEEECCcHHHHH-------HHHHHhcCCCcEEEEEEec
Confidence 544 499999998885544 3688999999999998764
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.91 E-value=5.5e-09 Score=103.03 Aligned_cols=111 Identities=14% Similarity=0.144 Sum_probs=76.1
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----------CcEEEeCCccchHHHHHHHHHHc-----CCCeEE
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----------NIITMSFAPRDTHEAQVQFALER-----GVPALI 261 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----------~V~avdis~~dls~a~i~~A~er-----g~~~~~ 261 (626)
....+.+.+.....++.+|||||||+|.++..|++. .++++|+++..+..+..+..... ...+.+
T Consensus 70 ~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~ 149 (227)
T 1r18_A 70 MHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLI 149 (227)
T ss_dssp HHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEE
Confidence 334455555312233559999999999999888763 58899988765554443333211 124667
Q ss_pred EEcccccCCCCC-CCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 006905 262 GVLAAERLPYPS-RAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGPP 315 (626)
Q Consensus 262 ~v~d~~~Lpf~d-~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~pp 315 (626)
...|... ++++ ++||+|++..++++.. .++.++|||||.+++...+
T Consensus 150 ~~~d~~~-~~~~~~~fD~I~~~~~~~~~~-------~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 150 VEGDGRK-GYPPNAPYNAIHVGAAAPDTP-------TELINQLASGGRLIVPVGP 196 (227)
T ss_dssp EESCGGG-CCGGGCSEEEEEECSCBSSCC-------HHHHHTEEEEEEEEEEESC
T ss_pred EECCccc-CCCcCCCccEEEECCchHHHH-------HHHHHHhcCCCEEEEEEec
Confidence 7777655 4444 7899999998885543 6789999999999998653
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.91 E-value=5.8e-09 Score=104.10 Aligned_cols=107 Identities=13% Similarity=0.094 Sum_probs=77.7
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcC-CCeEEEEcccccCCCCC
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERG-VPALIGVLAAERLPYPS 273 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg-~~~~~~v~d~~~Lpf~d 273 (626)
.+.+.+...+ +.+|||+|||+|.++..+++. .++++|+++..+..+........+ ..+.+...|....++++
T Consensus 87 ~~~~~~~~~~--~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~ 164 (258)
T 2pwy_A 87 AMVTLLDLAP--GMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEE 164 (258)
T ss_dssp HHHHHTTCCT--TCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCT
T ss_pred HHHHHcCCCC--CCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC
Confidence 4444444333 459999999999999888875 578888877555444333332204 34677778888888888
Q ss_pred CCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 274 RAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 274 ~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++||+|++.. . ++..++.++.++|||||.+++..+
T Consensus 165 ~~~D~v~~~~-----~-~~~~~l~~~~~~L~~gG~l~~~~~ 199 (258)
T 2pwy_A 165 AAYDGVALDL-----M-EPWKVLEKAALALKPDRFLVAYLP 199 (258)
T ss_dssp TCEEEEEEES-----S-CGGGGHHHHHHHEEEEEEEEEEES
T ss_pred CCcCEEEECC-----c-CHHHHHHHHHHhCCCCCEEEEEeC
Confidence 8999999832 2 346789999999999999999865
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.89 E-value=4.3e-09 Score=103.43 Aligned_cols=107 Identities=13% Similarity=-0.041 Sum_probs=75.3
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---------CcEEEeCCccchHHHHHHHHHHcC------CCeEEEEc
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---------NIITMSFAPRDTHEAQVQFALERG------VPALIGVL 264 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---------~V~avdis~~dls~a~i~~A~erg------~~~~~~v~ 264 (626)
.+.+.+.....++.+|||||||+|.++..|++. .++++|+++..+..+..+.. ..+ ..+.+...
T Consensus 69 ~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~~~~~v~~~~~ 147 (227)
T 2pbf_A 69 LSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIK-RDKPELLKIDNFKIIHK 147 (227)
T ss_dssp HHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHH-HHCGGGGSSTTEEEEEC
T ss_pred HHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHH-HcCccccccCCEEEEEC
Confidence 444444212223569999999999999888874 58888887755544433333 333 34677777
Q ss_pred ccccCC----CCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 265 AAERLP----YPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 265 d~~~Lp----f~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
|..... ...++||+|++...+++. +.++.++|||||.+++..+
T Consensus 148 d~~~~~~~~~~~~~~fD~I~~~~~~~~~-------~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 148 NIYQVNEEEKKELGLFDAIHVGASASEL-------PEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp CGGGCCHHHHHHHCCEEEEEECSBBSSC-------CHHHHHHEEEEEEEEEEEE
T ss_pred ChHhcccccCccCCCcCEEEECCchHHH-------HHHHHHhcCCCcEEEEEEc
Confidence 876654 556789999998887543 4778999999999999865
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=2.1e-10 Score=113.99 Aligned_cols=98 Identities=15% Similarity=0.122 Sum_probs=75.1
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCCCCCCCeeEEEecccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLPYPSRAFDMAHCSRCLIP 287 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h 287 (626)
+.+|||+|||+|.++..|++. .|+++|+++.++..+.. .+...++ .+.+..+|...++ ++++||+|+++..+++
T Consensus 79 ~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~~ 156 (241)
T 3gdh_A 79 CDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARN-NAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPWGG 156 (241)
T ss_dssp CSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCCSS
T ss_pred CCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHH-HHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCcCC
Confidence 458999999999999999987 57888887755554333 3334454 5778888877766 5679999999998855
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEE
Q 006905 288 WNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 288 ~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
.. .....+.++.++|+|||.+++.
T Consensus 157 ~~-~~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 157 PD-YATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp GG-GGGSSSBCTTTSCSSCHHHHHH
T ss_pred cc-hhhhHHHHHHhhcCCcceeHHH
Confidence 44 3455778999999999997775
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.88 E-value=6.7e-09 Score=105.35 Aligned_cols=108 Identities=17% Similarity=0.086 Sum_probs=78.4
Q ss_pred HHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcC---CCeEEEEcccccCC
Q 006905 199 DDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERG---VPALIGVLAAERLP 270 (626)
Q Consensus 199 ~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg---~~~~~~v~d~~~Lp 270 (626)
..+...+...+ +.+|||+|||+|.++..|++. .++++|+++..+..+..+.....+ ..+.+...|...++
T Consensus 89 ~~i~~~~~~~~--~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~ 166 (280)
T 1i9g_A 89 AQIVHEGDIFP--GARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 166 (280)
T ss_dssp HHHHHHTTCCT--TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHcCCCC--CCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence 34444544333 458999999999999988874 588888877555444433332203 35677778888888
Q ss_pred CCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 271 YPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 271 f~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+++++||+|++.. . ++..++.++.++|+|||++++..+
T Consensus 167 ~~~~~~D~v~~~~-----~-~~~~~l~~~~~~L~pgG~l~~~~~ 204 (280)
T 1i9g_A 167 LPDGSVDRAVLDM-----L-APWEVLDAVSRLLVAGGVLMVYVA 204 (280)
T ss_dssp CCTTCEEEEEEES-----S-CGGGGHHHHHHHEEEEEEEEEEES
T ss_pred CCCCceeEEEECC-----c-CHHHHHHHHHHhCCCCCEEEEEeC
Confidence 8888999999843 1 345789999999999999999865
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.1e-09 Score=108.67 Aligned_cols=102 Identities=16% Similarity=0.121 Sum_probs=74.1
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-----cceec-cccccCCCCC-Cccceeee-ccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-----VGTYT-NWCEAMSTYP-RTYDLIHA-DSV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-----i~~~~-~~~e~~~~yp-~t~Dlih~-~~~ 541 (626)
-.+|||+|||+|.++..|++.+. -+|+.+|.++.|++.+.++.- +.+++ |+.+....+| ++||+|.+ ...
T Consensus 61 ~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~ 138 (236)
T 1zx0_A 61 GGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP 138 (236)
T ss_dssp CEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred CCeEEEEeccCCHHHHHHHhcCC--CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCcc
Confidence 46799999999999999988754 378999999999999988752 23333 3333223466 89999998 333
Q ss_pred cc-cCCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 542 FS-LYKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 542 f~-~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
+. ...+.-+.+.+|.|+.|+|||||.+++.+.
T Consensus 139 ~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 171 (236)
T 1zx0_A 139 LSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL 171 (236)
T ss_dssp CBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred cchhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence 21 111222345789999999999999998753
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.88 E-value=3.9e-09 Score=102.30 Aligned_cols=95 Identities=25% Similarity=0.407 Sum_probs=74.2
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc-ccceeccccccCCCCC-CccceeeeccccccCCC
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG-LVGTYTNWCEAMSTYP-RTYDLIHADSVFSLYKD 547 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg-li~~~~~~~e~~~~yp-~t~Dlih~~~~f~~~~~ 547 (626)
-.+|||+|||.|.++..| +. -+|+.+|.++.++..+.++. -+..++.-.+.+ ++| ++||+|.+..++.+..
T Consensus 37 ~~~vLdiG~G~G~~~~~l---~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~~~l~~~~- 109 (211)
T 2gs9_A 37 GESLLEVGAGTGYWLRRL---PY--PQKVGVEPSEAMLAVGRRRAPEATWVRAWGEAL-PFPGESFDVVLLFTTLEFVE- 109 (211)
T ss_dssp CSEEEEETCTTCHHHHHC---CC--SEEEEECCCHHHHHHHHHHCTTSEEECCCTTSC-CSCSSCEEEEEEESCTTTCS-
T ss_pred CCeEEEECCCCCHhHHhC---CC--CeEEEEeCCHHHHHHHHHhCCCcEEEEcccccC-CCCCCcEEEEEEcChhhhcC-
Confidence 458999999999999998 22 16788999999999999884 123333212222 244 7999999999998876
Q ss_pred CCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 548 RCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 548 ~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
+...+|.|+.|+|||||.+++.+.
T Consensus 110 --~~~~~l~~~~~~L~pgG~l~i~~~ 133 (211)
T 2gs9_A 110 --DVERVLLEARRVLRPGGALVVGVL 133 (211)
T ss_dssp --CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --CHHHHHHHHHHHcCCCCEEEEEec
Confidence 568999999999999999999864
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=3.7e-09 Score=112.53 Aligned_cols=95 Identities=19% Similarity=0.143 Sum_probs=71.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEeccccccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPW 288 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~ 288 (626)
...+|||||||+|.++..++++ ++.++.+ |+ +.+++.+++. ..+.+..+|... ++++ ||+|++..++|||
T Consensus 209 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~---D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~~--~D~v~~~~~lh~~ 280 (372)
T 1fp1_D 209 GISTLVDVGGGSGRNLELIISKYPLIKGINF---DL-PQVIENAPPL-SGIEHVGGDMFA-SVPQ--GDAMILKAVCHNW 280 (372)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEE---EC-HHHHTTCCCC-TTEEEEECCTTT-CCCC--EEEEEEESSGGGS
T ss_pred CCCEEEEeCCCCcHHHHHHHHHCCCCeEEEe---Ch-HHHHHhhhhc-CCCEEEeCCccc-CCCC--CCEEEEecccccC
Confidence 3569999999999999999886 4444433 33 3444444432 346777778665 6664 9999999999888
Q ss_pred cccH-HHHHHHHHhcccCCeEEEEEe
Q 006905 289 NQFG-GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 289 ~~~~-~~~L~Ei~RvLKPGG~lvis~ 313 (626)
.+.. ..+|+++.|+|||||+|++..
T Consensus 281 ~d~~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 281 SDEKCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 7642 389999999999999999974
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=98.87 E-value=3.3e-09 Score=105.15 Aligned_cols=96 Identities=15% Similarity=0.141 Sum_probs=67.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEccccc----CCCCCCCeeEEEec
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAER----LPYPSRAFDMAHCS 282 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~----Lpf~d~sFDlV~~~ 282 (626)
++.+|||+|||+|.++..|++. .|+++|+++.++..+. +.+..+ ..+.+...|... +++. ++||+|++.
T Consensus 74 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~-~~~~~~-~~v~~~~~d~~~~~~~~~~~-~~~D~v~~~ 150 (230)
T 1fbn_A 74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELL-DACAER-ENIIPILGDANKPQEYANIV-EKVDVIYED 150 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHH-HHTTTC-TTEEEEECCTTCGGGGTTTS-CCEEEEEEC
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHH-HHhhcC-CCeEEEECCCCCcccccccC-ccEEEEEEe
Confidence 3568999999999999988875 4788888775443222 122222 456677778776 7776 789999832
Q ss_pred cccccccccHHHHHHHHHhcccCCeEEEEE
Q 006905 283 RCLIPWNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 283 ~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
. ........++.++.++|||||++++.
T Consensus 151 ~---~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 151 V---AQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp C---CSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred c---CChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 1 11111267799999999999999997
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2.8e-09 Score=110.66 Aligned_cols=130 Identities=11% Similarity=0.110 Sum_probs=88.8
Q ss_pred ceeEEeccCchhhHhhhhh-C-CCeEEEEeccCccCcccHHHHHHh----cccceeccccccCCCCC-Cccceeeecccc
Q 006905 470 YRNILDMNAHLGGFAAALI-D-FPVWVMNVVPAEAKINTLGVIYER----GLVGTYTNWCEAMSTYP-RTYDLIHADSVF 542 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~-~-~~v~~mnv~~~~~~~~~l~~~~~r----gli~~~~~~~e~~~~yp-~t~Dlih~~~~f 542 (626)
-.+|||+|||.|++++.++ + .+. .|+.+|.++.+++.|.++ |+ .-+.-.+.....+| ++||+|.+..+
T Consensus 123 g~rVLDIGcG~G~~ta~~lA~~~ga---~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~d~~FDvV~~~a~- 197 (298)
T 3fpf_A 123 GERAVFIGGGPLPLTGILLSHVYGM---RVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVIDGLEFDVLMVAAL- 197 (298)
T ss_dssp TCEEEEECCCSSCHHHHHHHHTTCC---EEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGGGCCCSEEEECTT-
T ss_pred cCEEEEECCCccHHHHHHHHHccCC---EEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCCCCCcCEEEECCC-
Confidence 5689999999999886654 3 244 799999999999998877 65 22222234455566 99999987543
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEEEcChHHH----HHHHHHHHhCCCeeEEeecCCCCCCcceEEEEEe
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIFRDDVDEL----VKVKRIIDALKWQSQIVDHEDGPLEREKLLFAVK 611 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~~~~----~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K 611 (626)
.-+.+.++.|+.|+|||||.+++++....- ..+.+ ...-.|+.....+-.+. ....|.+++|
T Consensus 198 -----~~d~~~~l~el~r~LkPGG~Lvv~~~~~~r~~l~~~v~~-~~~~gf~~~~~~~p~~~-v~N~vv~a~k 263 (298)
T 3fpf_A 198 -----AEPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSD-DDITGFRRAGVVLPSGK-VNNTSVLVFK 263 (298)
T ss_dssp -----CSCHHHHHHHHHHHCCTTCEEEEEECCGGGGGSSCCCCT-GGGTTEEEEEEECCCTT-CCCEEEEEEE
T ss_pred -----ccCHHHHHHHHHHHcCCCcEEEEEcCcchhhhccccCCh-hhhhhhhheeEECCCCC-cCcEEEEEEc
Confidence 136689999999999999999998743210 00101 12226766655554433 3467888888
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.3e-09 Score=112.00 Aligned_cols=94 Identities=15% Similarity=0.281 Sum_probs=73.6
Q ss_pred eEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc---------cceeccccccCCCC--CCccceeeec-
Q 006905 472 NILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL---------VGTYTNWCEAMSTY--PRTYDLIHAD- 539 (626)
Q Consensus 472 ~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl---------i~~~~~~~e~~~~y--p~t~Dlih~~- 539 (626)
+|||+|||.|.++..|++.+. +|+.+|.++.+++.+.++.- +.++. ..+..+ +.+||+|.+.
T Consensus 85 ~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~---~d~~~~~~~~~fD~v~~~~ 158 (299)
T 3g2m_A 85 PVLELAAGMGRLTFPFLDLGW---EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQ---GDMSAFALDKRFGTVVISS 158 (299)
T ss_dssp CEEEETCTTTTTHHHHHTTTC---CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEE---CBTTBCCCSCCEEEEEECH
T ss_pred cEEEEeccCCHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHhhcccccccceEEEe---CchhcCCcCCCcCEEEECC
Confidence 899999999999999999975 79999999999999888732 23333 333333 5999999865
Q ss_pred cccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 540 SVFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 540 ~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
.++.+. +..++..+|.++.|+|||||.+++..
T Consensus 159 ~~~~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~ 190 (299)
T 3g2m_A 159 GSINEL-DEADRRGLYASVREHLEPGGKFLLSL 190 (299)
T ss_dssp HHHTTS-CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccC-CHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 445443 33356789999999999999999974
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=4.7e-09 Score=111.88 Aligned_cols=94 Identities=15% Similarity=0.075 Sum_probs=72.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhC--C--cEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEeccccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR--N--IITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLI 286 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~--~--V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~ 286 (626)
...+|||||||+|.++..++++ + ++++|+ +.+++.++++ ..+.+..+|... |++++ |+|++..++|
T Consensus 203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~------~~~~~~a~~~-~~v~~~~~d~~~-~~p~~--D~v~~~~vlh 272 (368)
T 3reo_A 203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDL------PHVIQDAPAF-SGVEHLGGDMFD-GVPKG--DAIFIKWICH 272 (368)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC------HHHHTTCCCC-TTEEEEECCTTT-CCCCC--SEEEEESCGG
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh------HHHHHhhhhc-CCCEEEecCCCC-CCCCC--CEEEEechhh
Confidence 3569999999999999999885 3 455555 2344444332 357788888665 67654 9999999998
Q ss_pred cccccH-HHHHHHHHhcccCCeEEEEEeC
Q 006905 287 PWNQFG-GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 287 h~~~~~-~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+|.+.. ..+|+++.++|||||+++|...
T Consensus 273 ~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 301 (368)
T 3reo_A 273 DWSDEHCLKLLKNCYAALPDHGKVIVAEY 301 (368)
T ss_dssp GBCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 897654 5899999999999999999753
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.3e-09 Score=105.31 Aligned_cols=136 Identities=15% Similarity=0.127 Sum_probs=92.5
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc----cceeccccccCCCCC-Cccceeeecccccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL----VGTYTNWCEAMSTYP-RTYDLIHADSVFSL 544 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl----i~~~~~~~e~~~~yp-~t~Dlih~~~~f~~ 544 (626)
-.+|||+|||.|.++..|++.+.- +|+.+|.++.+++.+.++.- +.+.+.-.+.+ .++ .+||+|.+..+|.+
T Consensus 43 ~~~vLdiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 43 EDRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKL-DFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp TCCEEEETCTTCSHHHHHHHTTCC--CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSC-CSCSSCEEEEEEESHHHH
T ss_pred CCeEEEECCCCcHHHHHHHHcCCC--cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcC-CCCCCcccEEEECcchhh
Confidence 357999999999999999988642 78999999999999888742 23333111222 344 89999999888865
Q ss_pred CCC------------CCCHHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHH--HhCCCeeEEeecCCCCCCcceEEEEE
Q 006905 545 YKD------------RCETEDILLEMDRILRPEGGVIFRDDVDELVKVKRII--DALKWQSQIVDHEDGPLEREKLLFAV 610 (626)
Q Consensus 545 ~~~------------~c~~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~--~~l~w~~~~~~~e~~~~~~e~~l~~~ 610 (626)
... ..+...+|.|+.|+|||||.+++.+..... ..+.++ ....|.......+++. .-.+.+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 196 (215)
T 2pxx_A 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPH-FRTRHYAQAYYGWSLRHATYGSGF--HFHLYLMH 196 (215)
T ss_dssp HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCHH-HHHHHHCCGGGCEEEEEEEESGGG--CEEEEEEE
T ss_pred hccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCcH-HHHHHHhccccCcEEEEEEecCcc--eEEEEEEE
Confidence 431 124578999999999999999998765321 122333 3446876644433322 33466666
Q ss_pred e
Q 006905 611 K 611 (626)
Q Consensus 611 K 611 (626)
|
T Consensus 197 ~ 197 (215)
T 2pxx_A 197 K 197 (215)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.87 E-value=8.8e-09 Score=103.99 Aligned_cols=121 Identities=14% Similarity=0.198 Sum_probs=91.4
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc---cceec-cccccCCCCC-Cccceeeecc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL---VGTYT-NWCEAMSTYP-RTYDLIHADS 540 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~-~~~e~~~~yp-~t~Dlih~~~ 540 (626)
-.+|||+|||.|.++..|++++-. +|+.+|.++.+++.+.++ |+ +.+++ |..+....++ .+||+|.++-
T Consensus 50 ~~~vLDlG~G~G~~~~~la~~~~~--~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~np 127 (259)
T 3lpm_A 50 KGKIIDLCSGNGIIPLLLSTRTKA--KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNP 127 (259)
T ss_dssp CCEEEETTCTTTHHHHHHHTTCCC--EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECC
T ss_pred CCEEEEcCCchhHHHHHHHHhcCC--cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECC
Confidence 568999999999999999988543 899999999999887765 43 34444 3333333354 8999999976
Q ss_pred ccccC-----------------CCCCCHHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHhCCCeeE
Q 006905 541 VFSLY-----------------KDRCETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 541 ~f~~~-----------------~~~c~~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~l~w~~~ 592 (626)
.|... ...++++.++.++.|+|||||.+++.-..+.+..+...+....|...
T Consensus 128 Py~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~~~~~~ 196 (259)
T 3lpm_A 128 PYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLDIIDIMRKYRLEPK 196 (259)
T ss_dssp CC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTTHHHHHHHHHHTTEEEE
T ss_pred CCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHHHHHHHHHCCCceE
Confidence 55322 11245678999999999999999998777778888888888888865
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.7e-09 Score=114.12 Aligned_cols=96 Identities=16% Similarity=0.068 Sum_probs=69.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhC--C--cEEEeCCccchHHHHHH-HHHHcC--CCeEEEEcccccCCCCCCCeeEEEecc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR--N--IITMSFAPRDTHEAQVQ-FALERG--VPALIGVLAAERLPYPSRAFDMAHCSR 283 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~--~--V~avdis~~dls~a~i~-~A~erg--~~~~~~v~d~~~Lpf~d~sFDlV~~~~ 283 (626)
...+|||||||+|.++..++++ + ++++|+ .....+ .+...+ ..+.+..+|.. .+++ +||+|++..
T Consensus 184 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~~~~~~~~~~~~v~~~~~d~~-~~~p--~~D~v~~~~ 255 (348)
T 3lst_A 184 ATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-----AEVVARHRLDAPDVAGRWKVVEGDFL-REVP--HADVHVLKR 255 (348)
T ss_dssp SSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-----HHHHTTCCCCCGGGTTSEEEEECCTT-TCCC--CCSEEEEES
T ss_pred CCceEEEECCccCHHHHHHHHHCCCCEEEEecC-----HHHhhcccccccCCCCCeEEEecCCC-CCCC--CCcEEEEeh
Confidence 3569999999999999999885 3 445554 222110 000112 23677777764 4455 899999999
Q ss_pred ccccccccH-HHHHHHHHhcccCCeEEEEEeC
Q 006905 284 CLIPWNQFG-GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 284 ~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++|||.+.. ..+|+++.|+|||||+|++...
T Consensus 256 vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~ 287 (348)
T 3lst_A 256 ILHNWGDEDSVRILTNCRRVMPAHGRVLVIDA 287 (348)
T ss_dssp CGGGSCHHHHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred hccCCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 998887644 6899999999999999999764
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=98.86 E-value=7.4e-09 Score=112.91 Aligned_cols=115 Identities=11% Similarity=0.000 Sum_probs=78.7
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHH--HHHH----HHHcC---CCeEE
Q 006905 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEA--QVQF----ALERG---VPALI 261 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a--~i~~----A~erg---~~~~~ 261 (626)
...+..+.+.+.... +.+|||||||+|.++..|++. .|+++|+++..+..+ |++. +...| ..+.+
T Consensus 228 p~~v~~ml~~l~l~~--g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~ 305 (433)
T 1u2z_A 228 PNFLSDVYQQCQLKK--GDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEF 305 (433)
T ss_dssp HHHHHHHHHHTTCCT--TCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEE
T ss_pred HHHHHHHHHhcCCCC--CCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEE
Confidence 444555555554443 559999999999999999884 489999988655544 3222 23345 24556
Q ss_pred EEcccccC--CC--CCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 262 GVLAAERL--PY--PSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 262 ~v~d~~~L--pf--~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
..++.... ++ ..++||+|+++.++ +..+...+|.++.|+|||||.+++..
T Consensus 306 i~gD~~~~~~~~~~~~~~FDvIvvn~~l--~~~d~~~~L~el~r~LKpGG~lVi~d 359 (433)
T 1u2z_A 306 SLKKSFVDNNRVAELIPQCDVILVNNFL--FDEDLNKKVEKILQTAKVGCKIISLK 359 (433)
T ss_dssp EESSCSTTCHHHHHHGGGCSEEEECCTT--CCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred EEcCccccccccccccCCCCEEEEeCcc--ccccHHHHHHHHHHhCCCCeEEEEee
Confidence 55543322 22 24689999998766 33445788999999999999999974
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=6.6e-09 Score=110.64 Aligned_cols=94 Identities=17% Similarity=0.099 Sum_probs=72.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEeccccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLI 286 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~ 286 (626)
...+|||||||+|.++..++++ .++++|+ ..+++.+++. ..+.+..+|... |++.+ |+|++..++|
T Consensus 201 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~------~~~~~~a~~~-~~v~~~~~D~~~-~~p~~--D~v~~~~vlh 270 (364)
T 3p9c_A 201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL------PHVISEAPQF-PGVTHVGGDMFK-EVPSG--DTILMKWILH 270 (364)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC------HHHHTTCCCC-TTEEEEECCTTT-CCCCC--SEEEEESCGG
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC------HHHHHhhhhc-CCeEEEeCCcCC-CCCCC--CEEEehHHhc
Confidence 3569999999999999999875 3555555 2344444332 357788888766 77754 9999999998
Q ss_pred cccccH-HHHHHHHHhcccCCeEEEEEeC
Q 006905 287 PWNQFG-GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 287 h~~~~~-~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+|.++. ..+|+++.++|||||+|+|...
T Consensus 271 ~~~d~~~~~~L~~~~~~L~pgG~l~i~e~ 299 (364)
T 3p9c_A 271 DWSDQHCATLLKNCYDALPAHGKVVLVQC 299 (364)
T ss_dssp GSCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 897643 6899999999999999999753
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=98.85 E-value=3.3e-09 Score=106.34 Aligned_cols=104 Identities=15% Similarity=0.012 Sum_probs=70.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhC------CcEEEeCCccchHHHHHHHHHHc--CC--C----------------------
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR------NIITMSFAPRDTHEAQVQFALER--GV--P---------------------- 258 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~------~V~avdis~~dls~a~i~~A~er--g~--~---------------------- 258 (626)
...+|||+|||+|.++..++.. .++++|+++..+..+..+..... ++ .
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 3568999999999999888764 58889988765554432221110 11 0
Q ss_pred ---eE-------------EEEcccccCCC-----CCCCeeEEEeccccccccc--------cHHHHHHHHHhcccCCeEE
Q 006905 259 ---AL-------------IGVLAAERLPY-----PSRAFDMAHCSRCLIPWNQ--------FGGIYLIEVDRVLRPGGYW 309 (626)
Q Consensus 259 ---~~-------------~~v~d~~~Lpf-----~d~sFDlV~~~~~l~h~~~--------~~~~~L~Ei~RvLKPGG~l 309 (626)
+. +...|...... ..++||+|+|+..+++... ....++.++.++|||||++
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 210 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI 210 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence 22 66667544221 3458999999876644332 2258999999999999999
Q ss_pred EEEeC
Q 006905 310 ILSGP 314 (626)
Q Consensus 310 vis~p 314 (626)
++...
T Consensus 211 ~~~~~ 215 (250)
T 1o9g_A 211 AVTDR 215 (250)
T ss_dssp EEEES
T ss_pred EEeCc
Confidence 99643
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=98.85 E-value=5.4e-09 Score=102.78 Aligned_cols=99 Identities=15% Similarity=0.138 Sum_probs=70.2
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEccccc-CCCC-----CCCeeE
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAER-LPYP-----SRAFDM 278 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~-Lpf~-----d~sFDl 278 (626)
..+|||||||+|..+..|++. .|+++|+++.++..+..+. ...+.. +.+..+|+.. ++.. .++||+
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~ 137 (221)
T 3u81_A 59 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQML-NFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 137 (221)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHH-HHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSE
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHH-HHcCCCCceEEEECCHHHHHHHHHHhcCCCceEE
Confidence 458999999999999999873 5888998876555443333 333442 6777777533 3322 268999
Q ss_pred EEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 279 AHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 279 V~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
|++....+++.. ...++.++ ++|||||+|++..
T Consensus 138 V~~d~~~~~~~~-~~~~~~~~-~~LkpgG~lv~~~ 170 (221)
T 3u81_A 138 VFLDHWKDRYLP-DTLLLEKC-GLLRKGTVLLADN 170 (221)
T ss_dssp EEECSCGGGHHH-HHHHHHHT-TCCCTTCEEEESC
T ss_pred EEEcCCcccchH-HHHHHHhc-cccCCCeEEEEeC
Confidence 999876645433 34667777 9999999999864
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.7e-09 Score=102.99 Aligned_cols=98 Identities=10% Similarity=0.097 Sum_probs=73.4
Q ss_pred ceeEEeccCchhhHh-hhhhCCCeEEEEeccCccCcccHHHHHHhc----c-cceeccccccCCCCC-Cccceeeecccc
Q 006905 470 YRNILDMNAHLGGFA-AALIDFPVWVMNVVPAEAKINTLGVIYERG----L-VGTYTNWCEAMSTYP-RTYDLIHADSVF 542 (626)
Q Consensus 470 ~r~vlD~g~g~G~fa-a~l~~~~v~~mnv~~~~~~~~~l~~~~~rg----l-i~~~~~~~e~~~~yp-~t~Dlih~~~~f 542 (626)
-.+|||+|||.|.++ ..++..+. +|+.+|.++.+++.+.++. . +...+.-.+.+ .+| ++||+|.+..++
T Consensus 24 ~~~vLDiGcG~G~~~~~~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 24 DKTVLDCGAGGDLPPLSIFVEDGY---KTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKL-PFKDESMSFVYSYGTI 99 (209)
T ss_dssp CSEEEEESCCSSSCTHHHHHHTTC---EEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSC-CSCTTCEEEEEECSCG
T ss_pred CCEEEEECCCCCHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhC-CCCCCceeEEEEcChH
Confidence 468999999999984 45556665 7999999999999887762 1 23333112222 244 899999999888
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
.+.. .-+...+|.|+.|+|||||.+++.+
T Consensus 100 ~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~ 128 (209)
T 2p8j_A 100 FHMR-KNDVKEAIDEIKRVLKPGGLACINF 128 (209)
T ss_dssp GGSC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhCC-HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 8773 2356889999999999999999975
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.85 E-value=4.5e-09 Score=102.56 Aligned_cols=98 Identities=20% Similarity=0.324 Sum_probs=75.6
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc-----ccceeccccccCCC--CC-Cccceeeeccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG-----LVGTYTNWCEAMST--YP-RTYDLIHADSV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg-----li~~~~~~~e~~~~--yp-~t~Dlih~~~~ 541 (626)
-.+|||+|||.|.++..|++.+. +|+.+|.++.+++.+.++. -+..++ ..+.. +| .+||+|.+..+
T Consensus 39 ~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~~~D~v~~~~~ 112 (227)
T 1ve3_A 39 RGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIV---GDARKLSFEDKTFDYVIFIDS 112 (227)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEE---CCTTSCCSCTTCEEEEEEESC
T ss_pred CCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCceEEE---CchhcCCCCCCcEEEEEEcCc
Confidence 45899999999999999998865 8999999999999888763 123333 22222 34 79999999888
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFRDDV 574 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~ 574 (626)
+.+... -+...+|.++.|+|||||.+++.+..
T Consensus 113 ~~~~~~-~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 113 IVHFEP-LELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp GGGCCH-HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hHhCCH-HHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 544332 24578999999999999999998654
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.85 E-value=8.7e-10 Score=109.58 Aligned_cols=100 Identities=11% Similarity=0.005 Sum_probs=76.6
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceeccccccCCCCC--------Cccceeeeccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYP--------RTYDLIHADSV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~yp--------~t~Dlih~~~~ 541 (626)
-.+|||+|||.|.++..|++.+. +|+.+|.++.+++.+.++.-...+.-.+..+...+ ..||+|.+..+
T Consensus 57 ~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~ 133 (245)
T 3ggd_A 57 ELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTG 133 (245)
T ss_dssp TSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESS
T ss_pred CCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcch
Confidence 45699999999999999998765 78999999999999988753111111123333322 24999999999
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
+.+... -+...+|.|+.|+|||||++++.+.
T Consensus 134 ~~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~ 164 (245)
T 3ggd_A 134 FHHIPV-EKRELLGQSLRILLGKQGAMYLIEL 164 (245)
T ss_dssp STTSCG-GGHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred hhcCCH-HHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 988763 3568999999999999999988753
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=98.85 E-value=8.9e-09 Score=103.15 Aligned_cols=102 Identities=21% Similarity=0.153 Sum_probs=72.5
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHc-------CC-CeEEEEccccc-CC--CCCCCe
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALER-------GV-PALIGVLAAER-LP--YPSRAF 276 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~er-------g~-~~~~~v~d~~~-Lp--f~d~sF 276 (626)
+.+|||||||+|.++..|++. .++++|+++..+..+..+....+ +. ++.+..+|+.. ++ +++++|
T Consensus 50 ~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~~ 129 (246)
T 2vdv_E 50 KVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQL 129 (246)
T ss_dssp CEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTCE
T ss_pred CCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccccc
Confidence 458999999999999999875 48999998865554433332220 43 46777788665 66 778899
Q ss_pred eEEEeccccccccccH--------HHHHHHHHhcccCCeEEEEEeC
Q 006905 277 DMAHCSRCLIPWNQFG--------GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 277 DlV~~~~~l~h~~~~~--------~~~L~Ei~RvLKPGG~lvis~p 314 (626)
|.|+....- +|.... ..++.++.++|+|||.|++...
T Consensus 130 d~v~~~~p~-p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td 174 (246)
T 2vdv_E 130 SKMFFCFPD-PHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITD 174 (246)
T ss_dssp EEEEEESCC-CC------CSSCCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred CEEEEECCC-cccccchhHHhhccHHHHHHHHHHcCCCCEEEEEec
Confidence 999864422 222110 4799999999999999999753
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.85 E-value=5.4e-09 Score=106.08 Aligned_cols=102 Identities=11% Similarity=0.040 Sum_probs=71.2
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHH---cCCC--eEEEEcccccC-------CCCCCC
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALE---RGVP--ALIGVLAAERL-------PYPSRA 275 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~e---rg~~--~~~~v~d~~~L-------pf~d~s 275 (626)
..+|||+|||+|.++..|+++ .++++|+++..+..+..+. .. .+.. +.+...|...+ ++++++
T Consensus 37 ~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~-~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~ 115 (260)
T 2ozv_A 37 ACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSL-ELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEH 115 (260)
T ss_dssp CEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHT-TSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTC
T ss_pred CCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHH-HhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCC
Confidence 458999999999999998876 5778888664333322221 12 3332 67777787665 366789
Q ss_pred eeEEEeccccccc-----------------cccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 276 FDMAHCSRCLIPW-----------------NQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 276 FDlV~~~~~l~h~-----------------~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
||+|+++..+... ......++.++.++|||||.|++..+
T Consensus 116 fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 171 (260)
T 2ozv_A 116 FHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISR 171 (260)
T ss_dssp EEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 9999998544221 12246889999999999999999754
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=98.85 E-value=2.6e-09 Score=114.42 Aligned_cols=117 Identities=20% Similarity=0.275 Sum_probs=89.8
Q ss_pred ceeEEeccCchhhHhhhhhCC---CeEEEEeccCccCcccHHHHHHh---------c-c----cceeccccccCC-----
Q 006905 470 YRNILDMNAHLGGFAAALIDF---PVWVMNVVPAEAKINTLGVIYER---------G-L----VGTYTNWCEAMS----- 527 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~---~v~~mnv~~~~~~~~~l~~~~~r---------g-l----i~~~~~~~e~~~----- 527 (626)
-.+|||+|||.|.++..|++. +. +|+.+|.++.+++.+.++ | + +..++.-.+.+.
T Consensus 84 ~~~VLDlGcG~G~~~~~la~~~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 84 GATVLDLGCGTGRDVYLASKLVGEHG---KVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHTTTC---EEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCEEEEecCccCHHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 457999999999999998764 33 789999999999999987 5 2 334442223321
Q ss_pred CCC-CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh-----------------------HHHHHHHHH
Q 006905 528 TYP-RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV-----------------------DELVKVKRI 583 (626)
Q Consensus 528 ~yp-~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~-----------------------~~~~~~~~~ 583 (626)
.+| ++||+|++..++.+.. +...+|.|+.|+|||||++++.+.. -....+.++
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~---d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 237 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLST---NKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRL 237 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHH
T ss_pred CCCCCCEEEEEEccchhcCC---CHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHH
Confidence 455 8999999999999876 4689999999999999999998521 113678888
Q ss_pred HHhCCCeeE
Q 006905 584 IDALKWQSQ 592 (626)
Q Consensus 584 ~~~l~w~~~ 592 (626)
+..-.++..
T Consensus 238 l~~aGF~~v 246 (383)
T 4fsd_A 238 VAEAGFRDV 246 (383)
T ss_dssp HHHTTCCCE
T ss_pred HHHCCCceE
Confidence 888878644
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.1e-08 Score=102.21 Aligned_cols=105 Identities=12% Similarity=0.127 Sum_probs=74.9
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEcccccCCCC
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAERLPYP 272 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~Lpf~ 272 (626)
.+...+...+ +.+|||+|||+|.++..+++. .++++|+++..+..+..+ +...+.+ +.+...|.... ++
T Consensus 84 ~i~~~~~~~~--~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~-~~ 159 (255)
T 3mb5_A 84 LIVAYAGISP--GDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWEN-IKWAGFDDRVTIKLKDIYEG-IE 159 (255)
T ss_dssp HHHHHTTCCT--TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHH-HHHHTCTTTEEEECSCGGGC-CC
T ss_pred HHHHhhCCCC--CCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHH-HHHcCCCCceEEEECchhhc-cC
Confidence 4455554433 559999999999999988876 578888877544433332 2333543 67777776543 67
Q ss_pred CCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 273 SRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 273 d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+++||+|+++. . ++..++.++.++|||||.+++..+
T Consensus 160 ~~~~D~v~~~~-----~-~~~~~l~~~~~~L~~gG~l~~~~~ 195 (255)
T 3mb5_A 160 EENVDHVILDL-----P-QPERVVEHAAKALKPGGFFVAYTP 195 (255)
T ss_dssp CCSEEEEEECS-----S-CGGGGHHHHHHHEEEEEEEEEEES
T ss_pred CCCcCEEEECC-----C-CHHHHHHHHHHHcCCCCEEEEEEC
Confidence 78899999843 2 346789999999999999999865
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.84 E-value=5.2e-09 Score=106.71 Aligned_cols=95 Identities=11% Similarity=0.091 Sum_probs=70.1
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHc-CC-CeEEEEcccccCCCCCCCeeEEEeccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALER-GV-PALIGVLAAERLPYPSRAFDMAHCSRC 284 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~er-g~-~~~~~v~d~~~Lpf~d~sFDlV~~~~~ 284 (626)
+.+|||+|||+|.++..+++. .++++|+++..+..+.. .+... +. .+.+...|... ++++++||+|++.
T Consensus 111 ~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~g~~~v~~~~~d~~~-~~~~~~fD~Vi~~-- 186 (275)
T 1yb2_A 111 GMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMD-NLSEFYDIGNVRTSRSDIAD-FISDQMYDAVIAD-- 186 (275)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHH-HHHTTSCCTTEEEECSCTTT-CCCSCCEEEEEEC--
T ss_pred cCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHH-HHHhcCCCCcEEEEECchhc-cCcCCCccEEEEc--
Confidence 559999999999999988764 57888887754443332 22233 43 46677777665 6677899999983
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 285 LIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 285 l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.. ++..++.++.++|||||.+++..+
T Consensus 187 ---~~-~~~~~l~~~~~~LkpgG~l~i~~~ 212 (275)
T 1yb2_A 187 ---IP-DPWNHVQKIASMMKPGSVATFYLP 212 (275)
T ss_dssp ---CS-CGGGSHHHHHHTEEEEEEEEEEES
T ss_pred ---Cc-CHHHHHHHHHHHcCCCCEEEEEeC
Confidence 22 346899999999999999999875
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=98.84 E-value=6.2e-09 Score=102.31 Aligned_cols=119 Identities=9% Similarity=0.098 Sum_probs=83.6
Q ss_pred eeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHHHh----cc--cceeccccccCCC-CC-Cccceeeecc
Q 006905 471 RNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIYER----GL--VGTYTNWCEAMST-YP-RTYDLIHADS 540 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~~~~e~~~~-yp-~t~Dlih~~~ 540 (626)
..|||+|||.|.++..|++. +. +|+++|.++.++..+.++ |+ +.+++.-.+.+.. +| .+||.|++..
T Consensus 40 ~~vLDiGcG~G~~~~~la~~~p~~---~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~ 116 (213)
T 2fca_A 40 PIHIEVGTGKGQFISGMAKQNPDI---NYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF 116 (213)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred ceEEEEecCCCHHHHHHHHHCCCC---CEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEEC
Confidence 46999999999999999875 44 899999999999988775 44 3344421222322 45 8999998742
Q ss_pred ccc-----cCCCCCCHHHHHHHhhhhccCCcEEEEE-cChHHHHHHHHHHHhCCCeeE
Q 006905 541 VFS-----LYKDRCETEDILLEMDRILRPEGGVIFR-DDVDELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 541 ~f~-----~~~~~c~~~~~l~E~dRiLRPgG~~i~~-d~~~~~~~~~~~~~~l~w~~~ 592 (626)
... +...+-..+.+|.++.|+|||||.+++. |..+....+.+++....|...
T Consensus 117 ~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g~~~~ 174 (213)
T 2fca_A 117 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLLT 174 (213)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEEE
T ss_pred CCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCccc
Confidence 211 1112222478999999999999999986 566666677776666667654
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.84 E-value=8.4e-09 Score=102.52 Aligned_cols=107 Identities=14% Similarity=0.125 Sum_probs=76.2
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEccccc-CC-C
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAER-LP-Y 271 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~-Lp-f 271 (626)
.+..++.... ..+|||||||+|.++..|++. .++++|+++..+..+.. .....++ .+.+..+|+.. ++ .
T Consensus 62 ~l~~~~~~~~--~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~~ 138 (232)
T 3ntv_A 62 LIKQLIRMNN--VKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQ-NLATYHFENQVRIIEGNALEQFENV 138 (232)
T ss_dssp HHHHHHHHHT--CCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHH-HHHHTTCTTTEEEEESCGGGCHHHH
T ss_pred HHHHHHhhcC--CCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEECCHHHHHHhh
Confidence 3444443333 458999999999999999883 68889988765554433 3334454 47788888654 34 4
Q ss_pred CCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 272 PSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 272 ~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
.+++||+|++... ......++.++.++|||||+|++..
T Consensus 139 ~~~~fD~V~~~~~----~~~~~~~l~~~~~~LkpgG~lv~d~ 176 (232)
T 3ntv_A 139 NDKVYDMIFIDAA----KAQSKKFFEIYTPLLKHQGLVITDN 176 (232)
T ss_dssp TTSCEEEEEEETT----SSSHHHHHHHHGGGEEEEEEEEEEC
T ss_pred ccCCccEEEEcCc----HHHHHHHHHHHHHhcCCCeEEEEee
Confidence 4689999997653 2334779999999999999998864
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=98.83 E-value=2.5e-09 Score=109.36 Aligned_cols=121 Identities=8% Similarity=0.049 Sum_probs=83.1
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc------------------ccc--------------
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG------------------LVG-------------- 517 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg------------------li~-------------- 517 (626)
-.+|||+|||+|.++..++..+.. +|+.+|.++.|++.+.++- +.|
T Consensus 72 ~~~vLDiGcG~G~~~~l~~~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 72 GRTLIDIGSGPTVYQLLSACSHFE--DITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CSEEEEETCTTCCGGGTTGGGGCS--EEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCeEEEECCCcChHHHHhhccCCC--eEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 468999999999965544443222 8999999999998876631 111
Q ss_pred ----eec-cccccCC----CCC-CccceeeeccccccCCCC-CCHHHHHHHhhhhccCCcEEEEEcCh------------
Q 006905 518 ----TYT-NWCEAMS----TYP-RTYDLIHADSVFSLYKDR-CETEDILLEMDRILRPEGGVIFRDDV------------ 574 (626)
Q Consensus 518 ----~~~-~~~e~~~----~yp-~t~Dlih~~~~f~~~~~~-c~~~~~l~E~dRiLRPgG~~i~~d~~------------ 574 (626)
+.+ |..+..+ .+| .+||+|.|..+|.+.... -+...+|.|+.|+|||||+|++.+..
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~ 229 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARL 229 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEE
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeee
Confidence 111 2222111 244 779999999998874431 25678999999999999999996311
Q ss_pred ----HHHHHHHHHHHhCCCeeE
Q 006905 575 ----DELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 575 ----~~~~~~~~~~~~l~w~~~ 592 (626)
-....+++++..-.++..
T Consensus 230 ~~~~~~~~~l~~~l~~aGf~~~ 251 (289)
T 2g72_A 230 TVVPVSEEEVREALVRSGYKVR 251 (289)
T ss_dssp ECCCCCHHHHHHHHHHTTEEEE
T ss_pred eeccCCHHHHHHHHHHcCCeEE
Confidence 135678888887777765
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.7e-08 Score=101.12 Aligned_cols=133 Identities=19% Similarity=0.165 Sum_probs=89.6
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-cce-----ecccc-ccCCCCCCccceeeecccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-VGT-----YTNWC-EAMSTYPRTYDLIHADSVF 542 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-i~~-----~~~~~-e~~~~yp~t~Dlih~~~~f 542 (626)
-.+|||+|||+|+|+..|++.+.. .|+++|.+++|+..+.++.- +.. ....+ +.+.. .-||.+.++.+|
T Consensus 38 g~~VLDiGcGtG~~t~~la~~g~~--~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~D~v~ 113 (232)
T 3opn_A 38 GKTCLDIGSSTGGFTDVMLQNGAK--LVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ--GRPSFTSIDVSF 113 (232)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCS--EEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS--CCCSEEEECCSS
T ss_pred CCEEEEEccCCCHHHHHHHhcCCC--EEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCc--CCCCEEEEEEEh
Confidence 457999999999999999998742 79999999999999877542 111 11111 22221 124555555555
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEEEc-------------------Ch---HHHHHHHHHHHhCCCeeEEeecC--C
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIFRD-------------------DV---DELVKVKRIIDALKWQSQIVDHE--D 598 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d-------------------~~---~~~~~~~~~~~~l~w~~~~~~~e--~ 598 (626)
... ..+|.|+.|+|||||.+++.. .. .....+.+++....|++.-.+.. .
T Consensus 114 ~~l------~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~~pi~ 187 (232)
T 3opn_A 114 ISL------DLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTFSPIK 187 (232)
T ss_dssp SCG------GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEECSSC
T ss_pred hhH------HHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEEEccCC
Confidence 443 679999999999999999861 11 23567778888888887754422 2
Q ss_pred CCC-CcceEEEEEec
Q 006905 599 GPL-EREKLLFAVKL 612 (626)
Q Consensus 599 ~~~-~~e~~l~~~K~ 612 (626)
|+. +.|.++.++|.
T Consensus 188 g~~gn~e~l~~~~~~ 202 (232)
T 3opn_A 188 GGAGNVEFLVHLLKD 202 (232)
T ss_dssp BTTTBCCEEEEEEES
T ss_pred CCCCCHHHHHHHhhc
Confidence 222 45777777773
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=6.4e-09 Score=98.15 Aligned_cols=115 Identities=17% Similarity=0.214 Sum_probs=86.6
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc---cceec-cccccCCCCCCccceeeeccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL---VGTYT-NWCEAMSTYPRTYDLIHADSV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~-~~~e~~~~yp~t~Dlih~~~~ 541 (626)
-.+|||+|||.|.++..|++.. .+|+.+|.++.+++.+.++ |+ +.+.+ |+.+.+... .+||+|.+..+
T Consensus 34 ~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~D~v~~~~~ 109 (192)
T 1l3i_A 34 NDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI-PDIDIAVVGGS 109 (192)
T ss_dssp TCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTS-CCEEEEEESCC
T ss_pred CCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccC-CCCCEEEECCc
Confidence 4689999999999999999987 4899999998999888774 32 23332 222212211 58999999766
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEEcC-hHHHHHHHHHHHhCCCeeEEe
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFRDD-VDELVKVKRIIDALKWQSQIV 594 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~-~~~~~~~~~~~~~l~w~~~~~ 594 (626)
+. ++..+|.++.|+|+|||.+++.+. .+....+.++++...|++...
T Consensus 110 ~~------~~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 157 (192)
T 1l3i_A 110 GG------ELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVNIT 157 (192)
T ss_dssp TT------CHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCEEE
T ss_pred hH------HHHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCCceEEE
Confidence 53 458899999999999999999764 466778888888877765543
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.4e-08 Score=102.20 Aligned_cols=98 Identities=17% Similarity=0.114 Sum_probs=71.2
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEccccc-CCCC--CCCeeEEEe
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAER-LPYP--SRAFDMAHC 281 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~-Lpf~--d~sFDlV~~ 281 (626)
+.+|||||||+|..+..|++. .++++|+++..+..+.. .+.+.++ .+.+..+|+.. ++.. .++||+|++
T Consensus 64 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~-~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~ 142 (248)
T 3tfw_A 64 AKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARE-NLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFI 142 (248)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHH-HHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEE
T ss_pred CCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEE
Confidence 458999999999999999875 58888887755544333 3334454 36777777544 4432 348999998
Q ss_pred ccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 282 SRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 282 ~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
... ......++.++.++|||||++++...
T Consensus 143 d~~----~~~~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 143 DAD----KPNNPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp CSC----GGGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred CCc----hHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 653 23346799999999999999998743
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=98.81 E-value=1.6e-08 Score=99.54 Aligned_cols=98 Identities=16% Similarity=0.148 Sum_probs=68.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccC---CCCCCCeeEEEec
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERL---PYPSRAFDMAHCS 282 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~L---pf~d~sFDlV~~~ 282 (626)
++.+|||+|||+|.++..|+++ .++++|+++.++.. +.+.+..+ ..+.+..+|.... ....++||+|++.
T Consensus 73 ~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~-~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRE-LVPIVEER-RNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHH-HHHHHSSC-TTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHH-HHHHHhcc-CCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 3568999999999999988864 57888887754432 22233222 4567777776552 1123589999986
Q ss_pred cccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 283 RCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 283 ~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
.. .......++.++.++|||||++++..
T Consensus 151 ~~---~~~~~~~~l~~~~~~LkpgG~l~~~~ 178 (227)
T 1g8a_A 151 VA---QPTQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp CC---STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC---CHhHHHHHHHHHHHhcCCCCEEEEEE
Confidence 54 22222456999999999999999973
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.3e-08 Score=100.11 Aligned_cols=91 Identities=9% Similarity=0.099 Sum_probs=59.6
Q ss_pred CCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEE-ccc-----ccCCCCCCCeeEEEec
Q 006905 212 IRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPALIGV-LAA-----ERLPYPSRAFDMAHCS 282 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~~~~v-~d~-----~~Lpf~d~sFDlV~~~ 282 (626)
+.+|||||||+|.++..|+++ .|+++|+++.++.. +.++........ .+. ..++ ...||.+.+.
T Consensus 38 g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~-----a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~~~D 110 (232)
T 3opn_A 38 GKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAW-----KIRSDERVVVMEQFNFRNAVLADFE--QGRPSFTSID 110 (232)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCH-----HHHTCTTEEEECSCCGGGCCGGGCC--SCCCSEEEEC
T ss_pred CCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHH-----HHHhCccccccccceEEEeCHhHcC--cCCCCEEEEE
Confidence 558999999999999999886 57899998877653 333332222111 111 1222 1124554444
Q ss_pred cccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 283 RCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 283 ~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
.++.+. ..+|.++.|+|||||.|++..
T Consensus 111 ~v~~~l----~~~l~~i~rvLkpgG~lv~~~ 137 (232)
T 3opn_A 111 VSFISL----DLILPPLYEILEKNGEVAALI 137 (232)
T ss_dssp CSSSCG----GGTHHHHHHHSCTTCEEEEEE
T ss_pred EEhhhH----HHHHHHHHHhccCCCEEEEEE
Confidence 444332 568999999999999999975
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.81 E-value=1.4e-08 Score=99.50 Aligned_cols=98 Identities=17% Similarity=0.153 Sum_probs=70.2
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEccccc-CCC-C----CCCeeE
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAER-LPY-P----SRAFDM 278 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~-Lpf-~----d~sFDl 278 (626)
..+|||||||+|.++..|++. .++++|+++..+..+... ....+.. +.+..+|... ++. . .++||+
T Consensus 65 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (225)
T 3tr6_A 65 AKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEY-WEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDL 143 (225)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEE
T ss_pred CCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHH-HHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccE
Confidence 448999999999999999875 588888877555443333 3344543 6777777533 321 1 178999
Q ss_pred EEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 279 AHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 279 V~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
|++... ......++.++.++|||||+|++...
T Consensus 144 v~~~~~----~~~~~~~l~~~~~~L~pgG~lv~~~~ 175 (225)
T 3tr6_A 144 IYIDAD----KANTDLYYEESLKLLREGGLIAVDNV 175 (225)
T ss_dssp EEECSC----GGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred EEECCC----HHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 997553 33457899999999999999999743
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=98.81 E-value=1.6e-08 Score=99.54 Aligned_cols=96 Identities=18% Similarity=0.173 Sum_probs=62.8
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHH----HHHHhccccee-cccccc--CCCCCCccceeeecccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLG----VIYERGLVGTY-TNWCEA--MSTYPRTYDLIHADSVF 542 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~----~~~~rgli~~~-~~~~e~--~~~yp~t~Dlih~~~~f 542 (626)
-.+|||+|||+|.++..|++..- .-.|+++|.++.+++ .+.++.-+... .|..+. +..++.+||+|.++.
T Consensus 58 g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~-- 134 (210)
T 1nt2_A 58 DERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDI-- 134 (210)
T ss_dssp SCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECC--
T ss_pred CCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEec--
Confidence 45799999999999998876510 116899999987554 33333212222 222221 123458999999962
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
. ..-....+|.|+.|+|||||.+++.
T Consensus 135 ~---~~~~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 135 A---QKNQIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp C---STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred c---ChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 1 1112344689999999999999997
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.3e-08 Score=105.79 Aligned_cols=115 Identities=16% Similarity=-0.001 Sum_probs=82.9
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhh-----CCcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCC
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLS-----RNIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLP 270 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~-----~~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lp 270 (626)
....+..++...+ +.+|||+|||+|.++..++. ..++++|+++.++..+.. .+...++ .+.+.+.|+..++
T Consensus 191 la~~l~~~~~~~~--~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~-n~~~~g~~~i~~~~~D~~~~~ 267 (354)
T 3tma_A 191 LAQALLRLADARP--GMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLARE-AALASGLSWIRFLRADARHLP 267 (354)
T ss_dssp HHHHHHHHTTCCT--TCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHH-HHHHTTCTTCEEEECCGGGGG
T ss_pred HHHHHHHHhCCCC--CCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHH-HHHHcCCCceEEEeCChhhCc
Confidence 3334444444333 45899999999999888876 479999998866654443 3444555 4788888998888
Q ss_pred CCCCCeeEEEeccccccccc-------cHHHHHHHHHhcccCCeEEEEEeC
Q 006905 271 YPSRAFDMAHCSRCLIPWNQ-------FGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 271 f~d~sFDlV~~~~~l~h~~~-------~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.+.+.||+|+++..+..... ....++.++.++|||||.+++..+
T Consensus 268 ~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 268 RFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp GTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred cccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 77778999999875522111 115789999999999999999865
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.1e-08 Score=101.50 Aligned_cols=96 Identities=14% Similarity=0.130 Sum_probs=70.0
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC---eEEEEccccc-CC-CCCCCeeEEEe
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVP---ALIGVLAAER-LP-YPSRAFDMAHC 281 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~---~~~~v~d~~~-Lp-f~d~sFDlV~~ 281 (626)
..+|||||||+|..+..|++. .++++|+++..+..+.. ...+.+.. +.+..+|+.. ++ +++++||+|++
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~-~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~ 135 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKA-LFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFG 135 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHH-HHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEE
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEE
Confidence 348999999999999988873 58899988865554433 33344544 6677777543 33 34689999998
Q ss_pred ccccccccccHHHHHHHHHhcccCCeEEEEE
Q 006905 282 SRCLIPWNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 282 ~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
.... .....++.++.++|||||++++.
T Consensus 136 d~~~----~~~~~~l~~~~~~LkpGG~lv~d 162 (221)
T 3dr5_A 136 QVSP----MDLKALVDAAWPLLRRGGALVLA 162 (221)
T ss_dssp CCCT----TTHHHHHHHHHHHEEEEEEEEET
T ss_pred cCcH----HHHHHHHHHHHHHcCCCcEEEEe
Confidence 6532 33467899999999999999995
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=98.81 E-value=5.2e-09 Score=100.76 Aligned_cols=140 Identities=10% Similarity=0.044 Sum_probs=83.3
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-----cceec-cccccCCC---CCCccceeeecc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-----VGTYT-NWCEAMST---YPRTYDLIHADS 540 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-----i~~~~-~~~e~~~~---yp~t~Dlih~~~ 540 (626)
-.+|||+|||.|.++..|++..- ..+|+.+|.++.++..+.++-- +.+++ |+.+.+.. .+.+||+|.++.
T Consensus 31 ~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~np 109 (215)
T 4dzr_A 31 GTRVIDVGTGSGCIAVSIALACP-GVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVSNP 109 (215)
T ss_dssp TEEEEEEESSBCHHHHHHHHHCT-TEEEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEECC
T ss_pred CCEEEEecCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEECC
Confidence 56899999999999999988721 1278999999899988776531 22332 44443322 238999999975
Q ss_pred ccccCCCC-------------CC----------HHHHHHHhhhhccCCcE-EEEEcChHHHHHHHHHHH--hCCCeeEEe
Q 006905 541 VFSLYKDR-------------CE----------TEDILLEMDRILRPEGG-VIFRDDVDELVKVKRIID--ALKWQSQIV 594 (626)
Q Consensus 541 ~f~~~~~~-------------c~----------~~~~l~E~dRiLRPgG~-~i~~d~~~~~~~~~~~~~--~l~w~~~~~ 594 (626)
-|...... .. +..++.++.|+|||||+ +++.-.......+.+++. ...|.....
T Consensus 110 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~~~gf~~~~~ 189 (215)
T 4dzr_A 110 PYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQADEVARLFAPWRERGFRVRK 189 (215)
T ss_dssp CCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSCHHHHHHHTGGGGGGTEECCE
T ss_pred CCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCccHHHHHHHHHHhhcCCceEEE
Confidence 55322110 01 16789999999999999 777655556677778777 666654321
Q ss_pred ecCCCCCCcceEEEEEec
Q 006905 595 DHEDGPLEREKLLFAVKL 612 (626)
Q Consensus 595 ~~e~~~~~~e~~l~~~K~ 612 (626)
-.. ..+.+++++++|.
T Consensus 190 ~~~--~~~~~r~~~~~~~ 205 (215)
T 4dzr_A 190 VKD--LRGIDRVIAVTRE 205 (215)
T ss_dssp EEC--TTSCEEEEEEEEC
T ss_pred EEe--cCCCEEEEEEEEc
Confidence 111 2245789988874
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.80 E-value=9.8e-09 Score=113.54 Aligned_cols=111 Identities=12% Similarity=0.097 Sum_probs=78.6
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCCC
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLPY 271 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lpf 271 (626)
|.+.+.+.+... .+.+|||||||+|.++..+++. .|+++|+++ ++. .+.+.+...++ .+.+..+|...+++
T Consensus 146 ~~~~il~~l~~~--~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~-~A~~~~~~~gl~~~v~~~~~d~~~~~~ 221 (480)
T 3b3j_A 146 YQRAILQNHTDF--KDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQ-HAEVLVKSNNLTDRIVVIPGKVEEVSL 221 (480)
T ss_dssp HHHHHHHTGGGT--TTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHH-HHHHHHHHTTCTTTEEEEESCTTTCCC
T ss_pred HHHHHHHhhhhc--CCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHH-HHHHHHHHcCCCCcEEEEECchhhCcc
Confidence 334444444333 3458999999999999998876 578888865 442 23334444554 47788888877776
Q ss_pred CCCCeeEEEecccccccccc-HHHHHHHHHhcccCCeEEEEE
Q 006905 272 PSRAFDMAHCSRCLIPWNQF-GGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 272 ~d~sFDlV~~~~~l~h~~~~-~~~~L~Ei~RvLKPGG~lvis 312 (626)
+ ++||+|+|+..++++... ....+.++.++|||||++++.
T Consensus 222 ~-~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 222 P-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp S-SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred C-CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 5 589999998876666533 356777899999999999864
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=8.9e-09 Score=103.11 Aligned_cols=93 Identities=12% Similarity=0.024 Sum_probs=69.9
Q ss_pred CCEEEEeCCCCchHHHHHhhC--------CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccC---CCCC-CCeeEE
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--------NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERL---PYPS-RAFDMA 279 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--------~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~L---pf~d-~sFDlV 279 (626)
..+|||||||+|..+..|++. .|+++|+++.++..+. .....+.+..+|...+ ++.+ .+||+|
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~-----~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I 156 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-----SDMENITLHQGDCSDLTTFEHLREMAHPLI 156 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-----GGCTTEEEEECCSSCSGGGGGGSSSCSSEE
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh-----ccCCceEEEECcchhHHHHHhhccCCCCEE
Confidence 358999999999999888763 5899999886654322 2234577888887663 5443 479999
Q ss_pred EeccccccccccHHHHHHHHHh-cccCCeEEEEEe
Q 006905 280 HCSRCLIPWNQFGGIYLIEVDR-VLRPGGYWILSG 313 (626)
Q Consensus 280 ~~~~~l~h~~~~~~~~L~Ei~R-vLKPGG~lvis~ 313 (626)
++... | .+...+|.++.| +|||||+|++..
T Consensus 157 ~~d~~--~--~~~~~~l~~~~r~~LkpGG~lv~~d 187 (236)
T 2bm8_A 157 FIDNA--H--ANTFNIMKWAVDHLLEEGDYFIIED 187 (236)
T ss_dssp EEESS--C--SSHHHHHHHHHHHTCCTTCEEEECS
T ss_pred EECCc--h--HhHHHHHHHHHHhhCCCCCEEEEEe
Confidence 98664 3 245789999998 999999999974
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.2e-08 Score=103.95 Aligned_cols=135 Identities=12% Similarity=0.208 Sum_probs=94.5
Q ss_pred ceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHh----cc--cceec-cccccCCCCCCccceeeeccc
Q 006905 470 YRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYER----GL--VGTYT-NWCEAMSTYPRTYDLIHADSV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~-~~~e~~~~yp~t~Dlih~~~~ 541 (626)
-.+|||+|||.|.++..|++. +- .+|+.+|.++.++.++.++ |+ +.+++ |+.+.+. +.+||+|.++--
T Consensus 110 ~~~vLDlG~GsG~~~~~la~~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~--~~~fD~Iv~npP 185 (276)
T 2b3t_A 110 PCRILDLGTGTGAIALALASERPD--CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALA--GQQFAMIVSNPP 185 (276)
T ss_dssp CCEEEEETCTTSHHHHHHHHHCTT--SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGT--TCCEEEEEECCC
T ss_pred CCEEEEecCCccHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcc--cCCccEEEECCC
Confidence 347999999999999999853 22 2789999999999988776 33 33333 4433221 489999999733
Q ss_pred cc-------------cCCCC---------CCHHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHhCCCeeE-EeecCC
Q 006905 542 FS-------------LYKDR---------CETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQ-IVDHED 598 (626)
Q Consensus 542 f~-------------~~~~~---------c~~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~l~w~~~-~~~~e~ 598 (626)
+. +.... ..+..++.++.|+|||||++++.........++++++...|+.. +..
T Consensus 186 y~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~v~~~~--- 262 (276)
T 2b3t_A 186 YIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCR--- 262 (276)
T ss_dssp CBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEE---
T ss_pred CCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCcEEEEEe---
Confidence 32 22111 13467899999999999999998777667788888887777543 221
Q ss_pred CCCCcceEEEEEe
Q 006905 599 GPLEREKLLFAVK 611 (626)
Q Consensus 599 ~~~~~e~~l~~~K 611 (626)
.-.+.+++++++|
T Consensus 263 d~~g~~r~~~~~~ 275 (276)
T 2b3t_A 263 DYGDNERVTLGRY 275 (276)
T ss_dssp CTTSSEEEEEEEC
T ss_pred cCCCCCcEEEEEE
Confidence 1225678888875
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=98.80 E-value=1.5e-08 Score=99.05 Aligned_cols=121 Identities=13% Similarity=0.167 Sum_probs=86.0
Q ss_pred ceeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHHHh----cc--cceec-cccccCCC-CC-Cccceeee
Q 006905 470 YRNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIYER----GL--VGTYT-NWCEAMST-YP-RTYDLIHA 538 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~-~~~e~~~~-yp-~t~Dlih~ 538 (626)
-..|||+|||.|.++..|++. +. +|+.+|.++.++..+.++ |+ +.+++ |+. .+.. +| .+||+|++
T Consensus 42 ~~~vLDiGcG~G~~~~~la~~~p~~---~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~-~~~~~~~~~~~D~i~~ 117 (214)
T 1yzh_A 42 NPIHVEVGSGKGAFVSGMAKQNPDI---NYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGS-DLTDYFEDGEIDRLYL 117 (214)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSS-CGGGTSCTTCCSEEEE
T ss_pred CCeEEEEccCcCHHHHHHHHHCCCC---CEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHH-HHHhhcCCCCCCEEEE
Confidence 346999999999999999876 33 899999999999988775 33 33333 322 2332 54 89999998
Q ss_pred ccccccCC-----CCCCHHHHHHHhhhhccCCcEEEEE-cChHHHHHHHHHHHhCCCeeEEe
Q 006905 539 DSVFSLYK-----DRCETEDILLEMDRILRPEGGVIFR-DDVDELVKVKRIIDALKWQSQIV 594 (626)
Q Consensus 539 ~~~f~~~~-----~~c~~~~~l~E~dRiLRPgG~~i~~-d~~~~~~~~~~~~~~l~w~~~~~ 594 (626)
+....... .+-..+.+|.++.|+|||||.+++. |..+....+.+++....|.....
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~ 179 (214)
T 1yzh_A 118 NFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNGV 179 (214)
T ss_dssp ESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEEE
T ss_pred ECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCeeeec
Confidence 74322111 1123468999999999999999996 45566777777777777876543
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.2e-08 Score=103.25 Aligned_cols=126 Identities=16% Similarity=0.121 Sum_probs=93.2
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc-cceec-cccccCCCCC-Cccceeeecccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL-VGTYT-NWCEAMSTYP-RTYDLIHADSVF 542 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl-i~~~~-~~~e~~~~yp-~t~Dlih~~~~f 542 (626)
-.+|||+|||.|.++.++++.+. +|+.+|.++.+++.+.++ |+ +.+++ ++.+. +| .+||+|.++.++
T Consensus 121 ~~~VLDiGcG~G~l~~~la~~g~---~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~---~~~~~fD~Vv~n~~~ 194 (254)
T 2nxc_A 121 GDKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA---LPFGPFDLLVANLYA 194 (254)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH---GGGCCEEEEEEECCH
T ss_pred CCEEEEecCCCcHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhc---CcCCCCCEEEECCcH
Confidence 35899999999999999999876 899999999999988875 33 33333 22222 44 789999996544
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEEEcC-hHHHHHHHHHHHhCCCeeEEeecCCCCCCcceEEEEEe
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIFRDD-VDELVKVKRIIDALKWQSQIVDHEDGPLEREKLLFAVK 611 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~-~~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K 611 (626)
. .+..++.++.|+|||||++++++. ......+.+.++...++....... +.-..|+++|
T Consensus 195 ~------~~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~~~~~~~----~~W~~l~~~k 254 (254)
T 2nxc_A 195 E------LHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEAAE----GEWVLLAYGR 254 (254)
T ss_dssp H------HHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEE----TTEEEEEEEC
T ss_pred H------HHHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEEEEEecc----CCeEEEEEEC
Confidence 3 256899999999999999999864 345778888888888887644333 2234555554
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.77 E-value=4.6e-09 Score=105.27 Aligned_cols=116 Identities=15% Similarity=0.206 Sum_probs=72.0
Q ss_pred HHHHHHHHhhccCC---CCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEccc
Q 006905 196 AYIDDIGKLINLND---GSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAA 266 (626)
Q Consensus 196 ~yi~~L~~ll~l~~---~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~ 266 (626)
.+...+..++.... ..+.+|||+|||+|.++..|+.+ .++++|+++.++..+..+ +...++. +.+..+|.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~~v~~~~~d~ 125 (254)
T 2h00_A 47 NYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKN-VEQNNLSDLIKVVKVPQ 125 (254)
T ss_dssp HHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEEECCT
T ss_pred HHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHH-HHHcCCCccEEEEEcch
Confidence 34444445544222 23568999999999988888764 688999988666544433 3344543 67777775
Q ss_pred ccC---CCC---CCCeeEEEeccccccccc--------------cHHHHHHHHHhcccCCeEEEEE
Q 006905 267 ERL---PYP---SRAFDMAHCSRCLIPWNQ--------------FGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 267 ~~L---pf~---d~sFDlV~~~~~l~h~~~--------------~~~~~L~Ei~RvLKPGG~lvis 312 (626)
... +++ +++||+|+|+..+++... ....++.++.|+|||||.+.+.
T Consensus 126 ~~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~ 191 (254)
T 2h00_A 126 KTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV 191 (254)
T ss_dssp TCSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred hhhhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence 542 444 368999999876644320 0124567889999999988664
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=9.9e-09 Score=108.33 Aligned_cols=93 Identities=13% Similarity=0.071 Sum_probs=71.2
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIP 287 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h 287 (626)
..+|||||||+|.++..++++ .++++|+ + .+++.+++. ..+.+..+|... ++++ ||+|++..++||
T Consensus 189 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-----~~~~~a~~~-~~v~~~~~d~~~-~~p~--~D~v~~~~~lh~ 258 (352)
T 1fp2_A 189 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-P-----QVVENLSGS-NNLTYVGGDMFT-SIPN--ADAVLLKYILHN 258 (352)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H-----HHHTTCCCB-TTEEEEECCTTT-CCCC--CSEEEEESCGGG
T ss_pred CceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-H-----HHHhhcccC-CCcEEEeccccC-CCCC--ccEEEeehhhcc
Confidence 468999999999999999875 4666666 4 344444432 236777777654 5553 999999999988
Q ss_pred ccccH-HHHHHHHHhcccC---CeEEEEEeC
Q 006905 288 WNQFG-GIYLIEVDRVLRP---GGYWILSGP 314 (626)
Q Consensus 288 ~~~~~-~~~L~Ei~RvLKP---GG~lvis~p 314 (626)
|.+.. ..+|+++.|+||| ||++++...
T Consensus 259 ~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~ 289 (352)
T 1fp2_A 259 WTDKDCLRILKKCKEAVTNDGKRGKVTIIDM 289 (352)
T ss_dssp SCHHHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 87642 3899999999999 999999754
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.8e-09 Score=111.25 Aligned_cols=100 Identities=17% Similarity=0.225 Sum_probs=74.9
Q ss_pred ceeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHHHhcc--------------------------------
Q 006905 470 YRNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIYERGL-------------------------------- 515 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~~rgl-------------------------------- 515 (626)
-.+|||+|||.|.++..|++. +. +|+.+|.++.+++.+.++--
T Consensus 47 ~~~VLDiGCG~G~~~~~la~~~~~~---~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (292)
T 3g07_A 47 GRDVLDLGCNVGHLTLSIACKWGPS---RMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKR 123 (292)
T ss_dssp TSEEEEESCTTCHHHHHHHHHTCCS---EEEEEESCHHHHHHHHHTC---------------------------------
T ss_pred CCcEEEeCCCCCHHHHHHHHHcCCC---EEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence 468999999999999999886 44 89999999999999887621
Q ss_pred --------------------------------cceec-ccccc---CCC-CCCccceeeeccccccCC---CCCCHHHHH
Q 006905 516 --------------------------------VGTYT-NWCEA---MST-YPRTYDLIHADSVFSLYK---DRCETEDIL 555 (626)
Q Consensus 516 --------------------------------i~~~~-~~~e~---~~~-yp~t~Dlih~~~~f~~~~---~~c~~~~~l 555 (626)
+..++ |+... +.. .+.+||+|.|..++.+.+ ...++..+|
T Consensus 124 ~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l 203 (292)
T 3g07_A 124 SCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMF 203 (292)
T ss_dssp ------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHH
Confidence 12222 22111 111 248999999988875543 334668899
Q ss_pred HHhhhhccCCcEEEEEc
Q 006905 556 LEMDRILRPEGGVIFRD 572 (626)
Q Consensus 556 ~E~dRiLRPgG~~i~~d 572 (626)
.++.|+|||||++|+..
T Consensus 204 ~~~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 204 RRIYRHLRPGGILVLEP 220 (292)
T ss_dssp HHHHHHEEEEEEEEEEC
T ss_pred HHHHHHhCCCcEEEEec
Confidence 99999999999999974
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1e-08 Score=96.83 Aligned_cols=129 Identities=16% Similarity=0.141 Sum_probs=88.8
Q ss_pred CceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc--cceeccccccCCC--CC-Cccceeeeccccc
Q 006905 469 RYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL--VGTYTNWCEAMST--YP-RTYDLIHADSVFS 543 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl--i~~~~~~~e~~~~--yp-~t~Dlih~~~~f~ 543 (626)
.-..|||+|||. +.+|.++.|++.+.++.- +...+.=.+.+.. +| ++||+|.|..++.
T Consensus 12 ~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~ 74 (176)
T 2ld4_A 12 AGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVPG 74 (176)
T ss_dssp TTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTT
T ss_pred CCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChhh
Confidence 356799999985 238889999999998842 3333322333433 35 8999999999988
Q ss_pred cC-CCCCCHHHHHHHhhhhccCCcEEEEEcChH----------HHHHHHHHHHhCCCeeEEeecCCCCCC----------
Q 006905 544 LY-KDRCETEDILLEMDRILRPEGGVIFRDDVD----------ELVKVKRIIDALKWQSQIVDHEDGPLE---------- 602 (626)
Q Consensus 544 ~~-~~~c~~~~~l~E~dRiLRPgG~~i~~d~~~----------~~~~~~~~~~~l~w~~~~~~~e~~~~~---------- 602 (626)
+. . +.+.+|.|+.|+|||||++++.+... ....+.+.++.-.+ +.+.+....+..
T Consensus 75 ~~~~---~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-i~~~~~~~~~~~~~~~~~~~~~ 150 (176)
T 2ld4_A 75 STTL---HSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL-VEVKELQREPLTPEEVQSVREH 150 (176)
T ss_dssp CCCC---CCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC-EEEEEEEEECCCHHHHHHHHHH
T ss_pred hccc---CHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC-cEeecCcccCCCHHHHHHHHHH
Confidence 87 4 45899999999999999999975421 15677777776666 444332211111
Q ss_pred --------cceEEEEEecccCCCc
Q 006905 603 --------REKLLFAVKLYWTAPA 618 (626)
Q Consensus 603 --------~e~~l~~~K~~w~~~~ 618 (626)
.-.+++++|+-|..++
T Consensus 151 ~g~~~~~~~~~~~~a~Kp~~~~gs 174 (176)
T 2ld4_A 151 LGHESDNLLFVQITGKKPNFEVGS 174 (176)
T ss_dssp TCCCCSSEEEEEEEEECCCSSCCS
T ss_pred hcccCCceEEEEEeccCCcccccC
Confidence 1457899998887654
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.77 E-value=8.6e-09 Score=103.28 Aligned_cols=116 Identities=14% Similarity=0.113 Sum_probs=79.2
Q ss_pred ceeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHHHh----------cc--cceecccccc-CCC-CC-Cc
Q 006905 470 YRNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIYER----------GL--VGTYTNWCEA-MST-YP-RT 532 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~~r----------gl--i~~~~~~~e~-~~~-yp-~t 532 (626)
-..|||+|||.|.++..|++. +. +|+++|.++.++..+.++ ++ +.+++.-.+. +.. +| .+
T Consensus 47 ~~~vLDiGcG~G~~~~~la~~~p~~---~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~ 123 (235)
T 3ckk_A 47 QVEFADIGCGYGGLLVELSPLFPDT---LILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQ 123 (235)
T ss_dssp CEEEEEETCTTCHHHHHHGGGSTTS---EEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTC
T ss_pred CCeEEEEccCCcHHHHHHHHHCCCC---eEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcC
Confidence 467999999999999999876 33 899999999999987653 33 3333321222 221 45 89
Q ss_pred cceeeeccccc-----cCCCCCCHHHHHHHhhhhccCCcEEEE-EcChHHHHHHHHHHHhCC
Q 006905 533 YDLIHADSVFS-----LYKDRCETEDILLEMDRILRPEGGVIF-RDDVDELVKVKRIIDALK 588 (626)
Q Consensus 533 ~Dlih~~~~f~-----~~~~~c~~~~~l~E~dRiLRPgG~~i~-~d~~~~~~~~~~~~~~l~ 588 (626)
||.|.+...-. +...|...+.+|.++.|+|||||.|++ +|..+....+.+.+....
T Consensus 124 ~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~~~ 185 (235)
T 3ckk_A 124 LTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHP 185 (235)
T ss_dssp EEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTST
T ss_pred eeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHHCC
Confidence 99987632111 122233346899999999999999998 476677777777666554
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.8e-08 Score=94.95 Aligned_cols=92 Identities=13% Similarity=0.081 Sum_probs=64.3
Q ss_pred CCEEEEeCCCCchHHHHHhhC-------------CcEEEeCCccchHHHHHHHHHHcCCCeEEE-EcccccCC-------
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-------------NIITMSFAPRDTHEAQVQFALERGVPALIG-VLAAERLP------- 270 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-------------~V~avdis~~dls~a~i~~A~erg~~~~~~-v~d~~~Lp------- 270 (626)
+.+|||+|||+|.++..|+++ .++++|+++... -..+.+. ..|....+
T Consensus 23 ~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~-----------~~~~~~~~~~d~~~~~~~~~~~~ 91 (196)
T 2nyu_A 23 GLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP-----------LEGATFLCPADVTDPRTSQRILE 91 (196)
T ss_dssp TCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC-----------CTTCEEECSCCTTSHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhccc-----------CCCCeEEEeccCCCHHHHHHHHH
Confidence 458999999999999998875 378888877320 1124455 55543332
Q ss_pred -CCCCCeeEEEeccccc---cccccH-------HHHHHHHHhcccCCeEEEEEeC
Q 006905 271 -YPSRAFDMAHCSRCLI---PWNQFG-------GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 271 -f~d~sFDlV~~~~~l~---h~~~~~-------~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+++++||+|+|..+++ ++..+. ..++.++.++|||||.|++...
T Consensus 92 ~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 92 VLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp HSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 3456899999976542 222222 3789999999999999999854
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.4e-08 Score=105.55 Aligned_cols=104 Identities=13% Similarity=0.109 Sum_probs=70.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHH---H-cCCCeEEEEcccccCCC--CCCCeeEEE
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFAL---E-RGVPALIGVLAAERLPY--PSRAFDMAH 280 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~---e-rg~~~~~~v~d~~~Lpf--~d~sFDlV~ 280 (626)
.+.+|||||||+|.++..+++. .++++|+++..+..+...+.. . ....+.+...|...++. ++++||+|+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi 174 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVI 174 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEE
Confidence 4568999999999999999875 578888877544433322211 0 12346777777665543 478999999
Q ss_pred eccccccccccH---HHHHHHHHhcccCCeEEEEEeC
Q 006905 281 CSRCLIPWNQFG---GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 281 ~~~~l~h~~~~~---~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+......++... ..+++++.|+|||||.|++...
T Consensus 175 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 211 (304)
T 3bwc_A 175 IDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGE 211 (304)
T ss_dssp EECC---------CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 976553222111 5889999999999999999754
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.4e-08 Score=103.75 Aligned_cols=95 Identities=15% Similarity=0.143 Sum_probs=68.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcC-------CCeEEE--EcccccCCCCCCCeeEEE
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR-NIITMSFAPRDTHEAQVQFALERG-------VPALIG--VLAAERLPYPSRAFDMAH 280 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~-~V~avdis~~dls~a~i~~A~erg-------~~~~~~--v~d~~~Lpf~d~sFDlV~ 280 (626)
++.+|||||||+|.++..++++ .|+++|+++ +... +.+.. ..+.+. ++|+..++ +++||+|+
T Consensus 74 ~g~~VLDlGcGtG~~s~~la~~~~V~gvD~s~-m~~~-----a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~ 145 (265)
T 2oxt_A 74 LTGRVVDLGCGRGGWSYYAASRPHVMDVRAYT-LGVG-----GHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIM 145 (265)
T ss_dssp CCEEEEEESCTTSHHHHHHHTSTTEEEEEEEC-CCCS-----SCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEE
T ss_pred CCCEEEEeCcCCCHHHHHHHHcCcEEEEECch-hhhh-----hhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEE
Confidence 3568999999999999999886 799999988 3211 11111 135666 67777766 67999999
Q ss_pred eccccccccc---cHH---HHHHHHHhcccCCe--EEEEEeC
Q 006905 281 CSRCLIPWNQ---FGG---IYLIEVDRVLRPGG--YWILSGP 314 (626)
Q Consensus 281 ~~~~l~h~~~---~~~---~~L~Ei~RvLKPGG--~lvis~p 314 (626)
|..+ ++... +.. .+|.++.|+||||| .|++...
T Consensus 146 sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~ 186 (265)
T 2oxt_A 146 CDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVL 186 (265)
T ss_dssp ECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred EeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeC
Confidence 9766 22211 111 37899999999999 9999753
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.76 E-value=4.6e-08 Score=100.27 Aligned_cols=118 Identities=13% Similarity=0.063 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeC-CccchHHHHHHHH----HHcCC------Ce
Q 006905 194 ADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSF-APRDTHEAQVQFA----LERGV------PA 259 (626)
Q Consensus 194 a~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdi-s~~dls~a~i~~A----~erg~------~~ 259 (626)
.....+.+.+..... .+.+|||||||+|.++..++.. .|+++|+ ++..+..+..+.. ...++ .+
T Consensus 64 ~~~l~~~l~~~~~~~--~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v 141 (281)
T 3bzb_A 64 ARALADTLCWQPELI--AGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASP 141 (281)
T ss_dssp HHHHHHHHHHCGGGT--TTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCC
T ss_pred HHHHHHHHHhcchhc--CCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCe
Confidence 444444454443322 3458999999999999988875 5788898 6755544433321 22222 23
Q ss_pred EEEEccccc----CC--CCCCCeeEEEeccccccccccHHHHHHHHHhccc---C--CeEEEEEeC
Q 006905 260 LIGVLAAER----LP--YPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLR---P--GGYWILSGP 314 (626)
Q Consensus 260 ~~~v~d~~~----Lp--f~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLK---P--GG~lvis~p 314 (626)
.+...+... +. +++++||+|+++.+++| ..+...++.++.++|+ | ||.+++...
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~-~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~ 206 (281)
T 3bzb_A 142 KVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSF-HQAHDALLRSVKMLLALPANDPTAVALVTFT 206 (281)
T ss_dssp EEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSC-GGGHHHHHHHHHHHBCCTTTCTTCEEEEEEC
T ss_pred EEEEecCCCccHHHHhhccCCCCCEEEEeCcccC-hHHHHHHHHHHHHHhcccCCCCCCEEEEEEE
Confidence 444333221 11 03578999999998855 4446899999999999 9 999887643
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=3.3e-09 Score=119.62 Aligned_cols=101 Identities=16% Similarity=0.132 Sum_probs=75.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcC-CCeEEEEcccccC--CCCCCCeeEEEecccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERG-VPALIGVLAAERL--PYPSRAFDMAHCSRCL 285 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg-~~~~~~v~d~~~L--pf~d~sFDlV~~~~~l 285 (626)
.+.+|||||||.|.++..|+++ .|+++|+++.++..+.. .|.+.+ .++.+.+.+++.+ ++.+++||+|+|..++
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~ 144 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRA-LAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVF 144 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCH
T ss_pred CCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHH-HHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcch
Confidence 3568999999999999999998 56777776655544332 344455 5788888888877 4678899999999999
Q ss_pred ccccccH-HHHHHHHHhcccCCeEEEEE
Q 006905 286 IPWNQFG-GIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 286 ~h~~~~~-~~~L~Ei~RvLKPGG~lvis 312 (626)
+|..+.. -..+..+.+.|+++|..++.
T Consensus 145 ehv~~~~~~~~~~~~~~tl~~~~~~~~~ 172 (569)
T 4azs_A 145 HHIVHLHGIDEVKRLLSRLADVTQAVIL 172 (569)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHSSEEEE
T ss_pred hcCCCHHHHHHHHHHHHHhccccceeeE
Confidence 9986532 24456677788888776664
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.1e-08 Score=105.28 Aligned_cols=95 Identities=17% Similarity=0.141 Sum_probs=68.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcC-------CCeEEE--EcccccCCCCCCCeeEEE
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR-NIITMSFAPRDTHEAQVQFALERG-------VPALIG--VLAAERLPYPSRAFDMAH 280 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~-~V~avdis~~dls~a~i~~A~erg-------~~~~~~--v~d~~~Lpf~d~sFDlV~ 280 (626)
++.+|||||||+|.++..++++ .|+++|+++ +... +.++. .++.+. ++|+..+| +++||+|+
T Consensus 82 ~g~~VLDlGcGtG~~s~~la~~~~V~gVD~s~-m~~~-----a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vv 153 (276)
T 2wa2_A 82 LKGTVVDLGCGRGSWSYYAASQPNVREVKAYT-LGTS-----GHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVL 153 (276)
T ss_dssp CCEEEEEESCTTCHHHHHHHTSTTEEEEEEEC-CCCT-----TSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEE
T ss_pred CCCEEEEeccCCCHHHHHHHHcCCEEEEECch-hhhh-----hhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEE
Confidence 3568999999999999999886 799999988 4211 11111 145666 77877776 67999999
Q ss_pred ecccccccc----ccH--HHHHHHHHhcccCCe--EEEEEeC
Q 006905 281 CSRCLIPWN----QFG--GIYLIEVDRVLRPGG--YWILSGP 314 (626)
Q Consensus 281 ~~~~l~h~~----~~~--~~~L~Ei~RvLKPGG--~lvis~p 314 (626)
|..+ +... +.. ..+|.++.|+||||| .|++...
T Consensus 154 sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~ 194 (276)
T 2wa2_A 154 CDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVL 194 (276)
T ss_dssp ECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred ECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeC
Confidence 9876 2221 111 137899999999999 9998653
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.7e-08 Score=98.15 Aligned_cols=96 Identities=11% Similarity=0.094 Sum_probs=69.7
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEccccc-CCCCCCCeeEEEecc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAER-LPYPSRAFDMAHCSR 283 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~-Lpf~d~sFDlV~~~~ 283 (626)
..+|||||||+|..+..|++. .++++|+++..+..+..... ..+. .+.+..+|... ++..++ ||+|++..
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~ 134 (210)
T 3c3p_A 57 PQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLH-DNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC 134 (210)
T ss_dssp CSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHH-HHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH-HCCCCceEEEEEecHHHHhccCCC-CCEEEEcC
Confidence 458999999999999999865 58888887755544333322 3343 36677777544 355456 99999864
Q ss_pred ccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 284 CLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 284 ~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
. ..+...++.++.++|||||++++..
T Consensus 135 ~----~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 135 D----VFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp T----TSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred C----hhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 2 2345789999999999999999864
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.7e-08 Score=107.25 Aligned_cols=96 Identities=14% Similarity=0.315 Sum_probs=75.0
Q ss_pred CceeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHHHh----cc---cceeccccccCC----CCCCccce
Q 006905 469 RYRNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIYER----GL---VGTYTNWCEAMS----TYPRTYDL 535 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~~~~e~~~----~yp~t~Dl 535 (626)
..++|||+|||.|.++.+|++. ++ .++.+|. +.+++.+.++ |+ +.... ..+. ++|.+||+
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~~~~~~p~~~D~ 251 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEV---EVTIVDL-PQQLEMMRKQTAGLSGSERIHGHG---ANLLDRDVPFPTGFDA 251 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTC---EEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEE---CCCCSSSCCCCCCCSE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCC---EEEEEeC-HHHHHHHHHHHHhcCcccceEEEE---ccccccCCCCCCCcCE
Confidence 4678999999999999999873 44 6788888 5899988876 33 33332 2222 36789999
Q ss_pred eeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 536 IHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 536 ih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
|++..++.++.+. +...+|.++.|+|||||.++|.|
T Consensus 252 v~~~~vlh~~~~~-~~~~~l~~~~~~L~pgG~l~i~e 287 (363)
T 3dp7_A 252 VWMSQFLDCFSEE-EVISILTRVAQSIGKDSKVYIME 287 (363)
T ss_dssp EEEESCSTTSCHH-HHHHHHHHHHHHCCTTCEEEEEE
T ss_pred EEEechhhhCCHH-HHHHHHHHHHHhcCCCcEEEEEe
Confidence 9999999887643 44578999999999999999975
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.7e-08 Score=94.17 Aligned_cols=127 Identities=13% Similarity=0.149 Sum_probs=92.2
Q ss_pred eEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceeccccccCCCCC-CccceeeeccccccCCCC--
Q 006905 472 NILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYP-RTYDLIHADSVFSLYKDR-- 548 (626)
Q Consensus 472 ~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~yp-~t~Dlih~~~~f~~~~~~-- 548 (626)
+|||+|||+|.++.+|++.+ +|+.+|.++.+++. ... +.+++. ..+..++ .+||+|.++..|....+.
T Consensus 26 ~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~--~~~-~~~~~~--d~~~~~~~~~fD~i~~n~~~~~~~~~~~ 96 (170)
T 3q87_B 26 IVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES--HRG-GNLVRA--DLLCSINQESVDVVVFNPPYVPDTDDPI 96 (170)
T ss_dssp EEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT--CSS-SCEEEC--STTTTBCGGGCSEEEECCCCBTTCCCTT
T ss_pred eEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc--ccC-CeEEEC--ChhhhcccCCCCEEEECCCCccCCcccc
Confidence 89999999999999999987 89999999888887 222 333331 1222345 899999998877753322
Q ss_pred ----CCHHHHHHHhhhhccCCcEEEEEcC-hHHHHHHHHHHHhCCCeeEEeecCCCCCCcceEEEEE
Q 006905 549 ----CETEDILLEMDRILRPEGGVIFRDD-VDELVKVKRIIDALKWQSQIVDHEDGPLEREKLLFAV 610 (626)
Q Consensus 549 ----c~~~~~l~E~dRiLRPgG~~i~~d~-~~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~ 610 (626)
.+...++.++-|.| |||.+++... ......+.++++...|+.......... .|++++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~~~~~~--~e~~~~~~ 160 (170)
T 3q87_B 97 IGGGYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERGYGTRILKVRKIL--GETVYIIK 160 (170)
T ss_dssp TBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEEEEECS--SSEEEEEE
T ss_pred ccCCcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEEEeeccC--CceEEEEE
Confidence 12346888898888 9999999764 356788889999999988755444333 35555553
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.3e-08 Score=97.94 Aligned_cols=98 Identities=15% Similarity=0.110 Sum_probs=69.8
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEccccc-CC-CC---CCCeeEE
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAER-LP-YP---SRAFDMA 279 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~-Lp-f~---d~sFDlV 279 (626)
+.+|||||||+|.++..|++. .++++|+++..+..+... ....+. .+.+..+|... ++ ++ .++||+|
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v 137 (223)
T 3duw_A 59 ARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSN-IERANLNDRVEVRTGLALDSLQQIENEKYEPFDFI 137 (223)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEE
T ss_pred CCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEE
Confidence 458999999999999999886 578888877555443333 333454 36777777543 22 11 2679999
Q ss_pred EeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 280 HCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 280 ~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++.... .....++.++.++|||||++++...
T Consensus 138 ~~d~~~----~~~~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 138 FIDADK----QNNPAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp EECSCG----GGHHHHHHHHHHTCCTTCEEEEESC
T ss_pred EEcCCc----HHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 986642 2346899999999999999988754
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.75 E-value=4.2e-08 Score=97.25 Aligned_cols=106 Identities=19% Similarity=0.107 Sum_probs=74.2
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCCCCCCC
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLPYPSRA 275 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lpf~d~s 275 (626)
.+...+.... +.+|||+|||+|.++..+++. .++++|+++..+..+... ....++ .+.+...|.....+++++
T Consensus 82 ~~~~~~~~~~--~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~ 158 (248)
T 2yvl_A 82 YIALKLNLNK--EKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKN-LKKFNLGKNVKFFNVDFKDAEVPEGI 158 (248)
T ss_dssp HHHHHTTCCT--TCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHH-HHHTTCCTTEEEECSCTTTSCCCTTC
T ss_pred HHHHhcCCCC--CCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHH-HHHcCCCCcEEEEEcChhhcccCCCc
Confidence 4444544333 458999999999999998874 678888877544433322 223343 466666676554435678
Q ss_pred eeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 276 FDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 276 FDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
||+|++.. .++..++.++.++|||||.+++..+
T Consensus 159 ~D~v~~~~------~~~~~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 159 FHAAFVDV------REPWHYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp BSEEEECS------SCGGGGHHHHHHHBCTTCEEEEEES
T ss_pred ccEEEECC------cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 99999843 1346789999999999999999865
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.8e-08 Score=99.54 Aligned_cols=108 Identities=14% Similarity=0.154 Sum_probs=75.0
Q ss_pred HHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccC-CC
Q 006905 199 DDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERL-PY 271 (626)
Q Consensus 199 ~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~L-pf 271 (626)
..+..++...+ +.+|||+|||+|.++..|++. .++++|+++..+..+.. .....+. .+.+..+|.... +.
T Consensus 44 ~~l~~~~~~~~--~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~ 120 (233)
T 2gpy_A 44 ESLLHLLKMAA--PARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHK-HVKALGLESRIELLFGDALQLGEK 120 (233)
T ss_dssp HHHHHHHHHHC--CSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHH-HHHHTTCTTTEEEECSCGGGSHHH
T ss_pred HHHHHHHhccC--CCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEECCHHHHHHh
Confidence 34444444333 458999999999999988875 57888887754443332 2223344 366777775553 43
Q ss_pred C--CCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 272 P--SRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 272 ~--d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
. +++||+|++.... .+...++.++.++|||||.+++..
T Consensus 121 ~~~~~~fD~I~~~~~~----~~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 121 LELYPLFDVLFIDAAK----GQYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp HTTSCCEEEEEEEGGG----SCHHHHHHHHGGGEEEEEEEEEET
T ss_pred cccCCCccEEEECCCH----HHHHHHHHHHHHHcCCCeEEEEEc
Confidence 3 5789999997654 245789999999999999999973
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.75 E-value=2.6e-08 Score=105.25 Aligned_cols=102 Identities=13% Similarity=0.083 Sum_probs=72.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHH----cCCCeEEEEcccccC-C-CCCCCeeEEE
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALE----RGVPALIGVLAAERL-P-YPSRAFDMAH 280 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~e----rg~~~~~~v~d~~~L-p-f~d~sFDlV~ 280 (626)
...+|||||||+|.++..|+++ .++++|+++..+..+...+... ....+.+..+|.... + +++++||+|+
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi 199 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI 199 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEE
Confidence 3569999999999999999876 5888888775554443332221 123567777775443 2 3467899999
Q ss_pred ecccccccc--cc--HHHHHHHHHhcccCCeEEEEEe
Q 006905 281 CSRCLIPWN--QF--GGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 281 ~~~~l~h~~--~~--~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+.... ++. .. ...++.++.|+|+|||.|++..
T Consensus 200 ~d~~~-p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 235 (334)
T 1xj5_A 200 VDSSD-PIGPAKELFEKPFFQSVARALRPGGVVCTQA 235 (334)
T ss_dssp ECCCC-TTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred ECCCC-ccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 96542 222 11 2689999999999999999974
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.7e-08 Score=108.13 Aligned_cols=99 Identities=19% Similarity=0.176 Sum_probs=75.5
Q ss_pred CceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc---cceeccccccCCCCCCccceeeeccc
Q 006905 469 RYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL---VGTYTNWCEAMSTYPRTYDLIHADSV 541 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~~~~e~~~~yp~t~Dlih~~~~ 541 (626)
.-.+|||+|||+|.++..|++.+. -+|+.+|.+ +++..+.++ |+ |.+++.-.+.+. +|..||+|++..+
T Consensus 63 ~~~~VLDlGcGtG~ls~~la~~g~--~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~Iv~~~~ 138 (376)
T 3r0q_C 63 EGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDIS-LPEKVDVIISEWM 138 (376)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTC--SEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCC-CSSCEEEEEECCC
T ss_pred CCCEEEEeccCcCHHHHHHHhcCC--CEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcC-cCCcceEEEEcCh
Confidence 356899999999999999998864 278999999 999887665 33 344442222222 4589999999776
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
.......-.++.++.+++|+|||||.+|+.
T Consensus 139 ~~~l~~e~~~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 139 GYFLLRESMFDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp BTTBTTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred hhcccchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 555554456788999999999999999885
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.6e-08 Score=100.50 Aligned_cols=112 Identities=13% Similarity=0.145 Sum_probs=76.4
Q ss_pred HHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCC-C--eEEEEeccCccCcc------cHHHHHHh----cc---cc
Q 006905 454 LSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDF-P--VWVMNVVPAEAKIN------TLGVIYER----GL---VG 517 (626)
Q Consensus 454 v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~-~--v~~mnv~~~~~~~~------~l~~~~~r----gl---i~ 517 (626)
...+..++..+.. ..-.+|||+|||.|.++..|++. + . +|+.+|.++. +++.+.++ |+ +.
T Consensus 29 ~~~~~~l~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~g~~~---~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~ 104 (275)
T 3bkx_A 29 TAHRLAIAEAWQV-KPGEKILEIGCGQGDLSAVLADQVGSSG---HVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLT 104 (275)
T ss_dssp HHHHHHHHHHHTC-CTTCEEEEESCTTSHHHHHHHHHHCTTC---EEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEE
T ss_pred HHHHHHHHHHcCC-CCCCEEEEeCCCCCHHHHHHHHHhCCCC---EEEEEECCccccccHHHHHHHHHHHHhcCCCCceE
Confidence 3344444444433 33568999999999999999876 2 4 7888888866 88887766 22 33
Q ss_pred eec-c-ccccCCCCC-CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 518 TYT-N-WCEAMSTYP-RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 518 ~~~-~-~~e~~~~yp-~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
+.+ | ....-.+++ .+||+|++..++.+..+ .+.++..+.++++|||++++.+
T Consensus 105 ~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~---~~~~~~~~~~l~~~gG~l~~~~ 159 (275)
T 3bkx_A 105 VHFNTNLSDDLGPIADQHFDRVVLAHSLWYFAS---ANALALLFKNMAAVCDHVDVAE 159 (275)
T ss_dssp EECSCCTTTCCGGGTTCCCSEEEEESCGGGSSC---HHHHHHHHHHHTTTCSEEEEEE
T ss_pred EEECChhhhccCCCCCCCEEEEEEccchhhCCC---HHHHHHHHHHHhCCCCEEEEEE
Confidence 333 1 111112344 89999999999988775 3556666677777799999974
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.1e-08 Score=99.61 Aligned_cols=130 Identities=16% Similarity=0.240 Sum_probs=87.6
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc---cceec-cccccCC-CCCCccceeeecc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL---VGTYT-NWCEAMS-TYPRTYDLIHADS 540 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~-~~~e~~~-~yp~t~Dlih~~~ 540 (626)
-.+|||+|||.|.++.+|++.. -..+|+.+|.++.++..+.++ |+ +.+++ |..+.+. ..+.+||+|.++.
T Consensus 72 ~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~ 150 (232)
T 3ntv_A 72 VKNILEIGTAIGYSSMQFASIS-DDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDA 150 (232)
T ss_dssp CCEEEEECCSSSHHHHHHHTTC-TTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEET
T ss_pred CCEEEEEeCchhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcC
Confidence 4589999999999999999831 023789999998999988765 33 33444 3333333 3358999999753
Q ss_pred ccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC-----------------hHHHHHHHHHHH----hCCCeeEEeecCCC
Q 006905 541 VFSLYKDRCETEDILLEMDRILRPEGGVIFRDD-----------------VDELVKVKRIID----ALKWQSQIVDHEDG 599 (626)
Q Consensus 541 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~-----------------~~~~~~~~~~~~----~l~w~~~~~~~e~~ 599 (626)
. .-.+..++.++.|+|||||.+++.+. ......++++.+ .-++...+...
T Consensus 151 ~------~~~~~~~l~~~~~~LkpgG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~--- 221 (232)
T 3ntv_A 151 A------KAQSKKFFEIYTPLLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQMVKKVQDYNEWLIKQPGYTTNFLNI--- 221 (232)
T ss_dssp T------SSSHHHHHHHHGGGEEEEEEEEEECTTGGGGGGCGGGGGCHHHHHHHHHHHHHHHHHHTCTTEEEEEECS---
T ss_pred c------HHHHHHHHHHHHHhcCCCeEEEEeeCCcCccccCcccccchhhhHHHHHHHHHHHHHhcCCCeEEEEEEc---
Confidence 2 33567899999999999999999321 112334444433 34566655532
Q ss_pred CCCcceEEEEEec
Q 006905 600 PLEREKLLFAVKL 612 (626)
Q Consensus 600 ~~~~e~~l~~~K~ 612 (626)
.+.+.+++|+
T Consensus 222 ---~dG~~i~~k~ 231 (232)
T 3ntv_A 222 ---DDGLAISIKG 231 (232)
T ss_dssp ---TTCEEEEEEC
T ss_pred ---CCceEEEEEC
Confidence 3668888874
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.74 E-value=4e-08 Score=103.02 Aligned_cols=108 Identities=15% Similarity=0.100 Sum_probs=71.8
Q ss_pred HHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHc-----------CCCeEEE
Q 006905 199 DDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALER-----------GVPALIG 262 (626)
Q Consensus 199 ~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~er-----------g~~~~~~ 262 (626)
..+...+...+ +.+|||+|||+|.++..|++. .++++|+++..+..+..+..... ...+.+.
T Consensus 95 ~~~l~~l~~~~--g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~ 172 (336)
T 2b25_A 95 NMILSMMDINP--GDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI 172 (336)
T ss_dssp HHHHHHHTCCT--TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred HHHHHhcCCCC--CCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEE
Confidence 34455554443 459999999999999988874 48888887765554444333211 1346777
Q ss_pred EcccccC--CCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 263 VLAAERL--PYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 263 v~d~~~L--pf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.+|...+ ++++++||+|++.... +..++.++.++|||||.|++..+
T Consensus 173 ~~d~~~~~~~~~~~~fD~V~~~~~~------~~~~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 173 HKDISGATEDIKSLTFDAVALDMLN------PHVTLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp ESCTTCCC-------EEEEEECSSS------TTTTHHHHGGGEEEEEEEEEEES
T ss_pred ECChHHcccccCCCCeeEEEECCCC------HHHHHHHHHHhcCCCcEEEEEeC
Confidence 7887665 5667789999985422 23478999999999999998754
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.73 E-value=5.9e-09 Score=102.88 Aligned_cols=110 Identities=13% Similarity=0.167 Sum_probs=81.6
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-cceec-cccccCCCC-CCccceeeeccccccCCC
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-VGTYT-NWCEAMSTY-PRTYDLIHADSVFSLYKD 547 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-i~~~~-~~~e~~~~y-p~t~Dlih~~~~f~~~~~ 547 (626)
.+|||+|||.|.++..|++.+. +|+.+|.++.+++.+.++.- +.+++ |+.+.++.- +.+||+|.+.
T Consensus 50 ~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~-------- 118 (226)
T 3m33_A 50 TRVLEAGCGHGPDAARFGPQAA---RWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR-------- 118 (226)
T ss_dssp CEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE--------
T ss_pred CeEEEeCCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC--------
Confidence 5799999999999999999875 89999999999999999832 23333 343333322 3799999985
Q ss_pred CCCHHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHhCCCeeE
Q 006905 548 RCETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 548 ~c~~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~l~w~~~ 592 (626)
-+...+|.++.|+|||||.++..........+.+.+....+...
T Consensus 119 -~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~~ 162 (226)
T 3m33_A 119 -RGPTSVILRLPELAAPDAHFLYVGPRLNVPEVPERLAAVGWDIV 162 (226)
T ss_dssp -SCCSGGGGGHHHHEEEEEEEEEEESSSCCTHHHHHHHHTTCEEE
T ss_pred -CCHHHHHHHHHHHcCCCcEEEEeCCcCCHHHHHHHHHHCCCeEE
Confidence 24578899999999999999954333334456666666666554
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.73 E-value=3.3e-08 Score=95.79 Aligned_cols=91 Identities=16% Similarity=0.076 Sum_probs=65.7
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCC-----------CCCeeE
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYP-----------SRAFDM 278 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~-----------d~sFDl 278 (626)
+.+|||+|||+|.++..++++ .|+++|+++... ...+.+.++|....+.. .++||+
T Consensus 26 g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~~-----------~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~ 94 (191)
T 3dou_A 26 GDAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEE-----------IAGVRFIRCDIFKETIFDDIDRALREEGIEKVDD 94 (191)
T ss_dssp TCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCCC-----------CTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEE
T ss_pred CCEEEEEeecCCHHHHHHHHcCCcEEEEecccccc-----------CCCeEEEEccccCHHHHHHHHHHhhcccCCcceE
Confidence 569999999999999999986 588999987421 12466777786665421 148999
Q ss_pred EEecccccc---cccc-------HHHHHHHHHhcccCCeEEEEEe
Q 006905 279 AHCSRCLIP---WNQF-------GGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 279 V~~~~~l~h---~~~~-------~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
|+|...... +..+ ...++.++.++|||||.|++..
T Consensus 95 Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~ 139 (191)
T 3dou_A 95 VVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQ 139 (191)
T ss_dssp EEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 999654311 1111 1467889999999999999875
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=5.1e-09 Score=106.47 Aligned_cols=102 Identities=15% Similarity=0.072 Sum_probs=76.6
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc----c---cceeccccccCCCC--CCccceeeecc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG----L---VGTYTNWCEAMSTY--PRTYDLIHADS 540 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg----l---i~~~~~~~e~~~~y--p~t~Dlih~~~ 540 (626)
-.+|||+|||.|.++..|++.+. .+|+.+|.++.++..+.++. + +.+.+.-.+.+ .+ +.+||+|.+..
T Consensus 65 ~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 65 GDSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR-HMDLGKEFDVISSQF 141 (298)
T ss_dssp TCEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTS-CCCCSSCEEEEEEES
T ss_pred CCeEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCcccc-ccCCCCCcCEEEECc
Confidence 45899999999999999987753 27899999999999888773 2 23333212222 23 38999999998
Q ss_pred ccccC-CCCCCHHHHHHHhhhhccCCcEEEEEcCh
Q 006905 541 VFSLY-KDRCETEDILLEMDRILRPEGGVIFRDDV 574 (626)
Q Consensus 541 ~f~~~-~~~c~~~~~l~E~dRiLRPgG~~i~~d~~ 574 (626)
++.+. .+.-+...+|.++.|+|||||++++....
T Consensus 142 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 142 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 88652 33335678999999999999999998654
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=7.2e-09 Score=102.63 Aligned_cols=115 Identities=12% Similarity=0.089 Sum_probs=79.2
Q ss_pred ceeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHHHh----cc--cceec-cccccCCC-CC-Cccceeee
Q 006905 470 YRNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIYER----GL--VGTYT-NWCEAMST-YP-RTYDLIHA 538 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~-~~~e~~~~-yp-~t~Dlih~ 538 (626)
-..|||+|||.|.++..|++. +. +|+++|.++.++..+.++ |+ +.+++ |-.+-+.. +| .+||.|++
T Consensus 35 ~~~vLDiGcG~G~~~~~lA~~~p~~---~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~ 111 (218)
T 3dxy_A 35 APVTLEIGFGMGASLVAMAKDRPEQ---DFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQL 111 (218)
T ss_dssp CCEEEEESCTTCHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEE
T ss_pred CCeEEEEeeeChHHHHHHHHHCCCC---eEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEE
Confidence 457999999999999999865 33 789999999999887665 44 23333 22221221 45 99999998
Q ss_pred ccccccCCC-----CCCHHHHHHHhhhhccCCcEEEEE-cChHHHHHHHHHHHhC
Q 006905 539 DSVFSLYKD-----RCETEDILLEMDRILRPEGGVIFR-DDVDELVKVKRIIDAL 587 (626)
Q Consensus 539 ~~~f~~~~~-----~c~~~~~l~E~dRiLRPgG~~i~~-d~~~~~~~~~~~~~~l 587 (626)
......... |-..+.+|.++.|+|||||.+++. |.......+.+++...
T Consensus 112 ~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~~ 166 (218)
T 3dxy_A 112 FFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSSI 166 (218)
T ss_dssp ESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTS
T ss_pred eCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 533222222 122246999999999999999985 5566666677666543
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=3.6e-08 Score=102.95 Aligned_cols=133 Identities=14% Similarity=0.145 Sum_probs=94.6
Q ss_pred CCceeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHHHh----cc---cceeccccccCCCCCCccceeee
Q 006905 468 GRYRNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIYER----GL---VGTYTNWCEAMSTYPRTYDLIHA 538 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~~~~e~~~~yp~t~Dlih~ 538 (626)
....+|||+|||.|.++..|++. ++ .++.+|. +.+++.+.++ |+ +..... ..+..+|..||+|.+
T Consensus 168 ~~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~~~p~~~D~v~~ 241 (332)
T 3i53_A 168 AALGHVVDVGGGSGGLLSALLTAHEDL---SGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVG--SFFDPLPAGAGGYVL 241 (332)
T ss_dssp GGGSEEEEETCTTSHHHHHHHHHCTTC---EEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEEC--CTTSCCCCSCSEEEE
T ss_pred CCCCEEEEeCCChhHHHHHHHHHCCCC---eEEEecC-HHHHHHHHHhhhhcCcCcCeEEecC--CCCCCCCCCCcEEEE
Confidence 56789999999999999999863 33 5666788 6888887765 44 333321 122456779999999
Q ss_pred ccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh----------H------------HHHHHHHHHHhCCCeeEEeec
Q 006905 539 DSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV----------D------------ELVKVKRIIDALKWQSQIVDH 596 (626)
Q Consensus 539 ~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~----------~------------~~~~~~~~~~~l~w~~~~~~~ 596 (626)
..++.++.+. ....+|.++.|+|||||+++|.|.. + ....++++++.-.++..-+..
T Consensus 242 ~~vlh~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 320 (332)
T 3i53_A 242 SAVLHDWDDL-SAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHP 320 (332)
T ss_dssp ESCGGGSCHH-HHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred ehhhccCCHH-HHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEEE
Confidence 9999988752 3578999999999999999997642 0 144566777777777653332
Q ss_pred CCCCCCcceEEEEEe
Q 006905 597 EDGPLEREKLLFAVK 611 (626)
Q Consensus 597 e~~~~~~e~~l~~~K 611 (626)
-. + ..|+.++|
T Consensus 321 ~~-~---~~vie~r~ 331 (332)
T 3i53_A 321 IS-Y---VSIVEMTA 331 (332)
T ss_dssp CS-S---SEEEEEEE
T ss_pred CC-C---cEEEEEee
Confidence 21 1 56777775
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.71 E-value=1.5e-07 Score=90.55 Aligned_cols=91 Identities=10% Similarity=-0.005 Sum_probs=64.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIP 287 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h 287 (626)
.+.+|||+|||+|.++..++.. .++++|+++ .+++.++++...+.+..+|...+| ++||+|+++..+++
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~-----~~~~~a~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~ 122 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDP-----DAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPFGS 122 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCH-----HHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC--
T ss_pred CCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCH-----HHHHHHHHhcCCCEEEECcHHHCC---CCeeEEEECCCchh
Confidence 4568999999999999999886 377887765 455555554335677788877765 68999999998876
Q ss_pred ccccH-HHHHHHHHhcccCCeEEEEE
Q 006905 288 WNQFG-GIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 288 ~~~~~-~~~L~Ei~RvLKPGG~lvis 312 (626)
+.... ..++.++.++| |+ +++.
T Consensus 123 ~~~~~~~~~l~~~~~~~--g~-~~~~ 145 (200)
T 1ne2_A 123 VVKHSDRAFIDKAFETS--MW-IYSI 145 (200)
T ss_dssp -----CHHHHHHHHHHE--EE-EEEE
T ss_pred ccCchhHHHHHHHHHhc--Cc-EEEE
Confidence 65422 57899999998 44 4444
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.71 E-value=3.4e-08 Score=100.95 Aligned_cols=96 Identities=9% Similarity=-0.021 Sum_probs=74.2
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCCCCCCCeeEEEeccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLPYPSRAFDMAHCSRCLI 286 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~ 286 (626)
+.+|||+|||+|.++..++++ .|+++|+++..+..+.. .+..+++ ++.+..+|+..++. .++||+|++....
T Consensus 120 ~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~-n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~p~- 196 (272)
T 3a27_A 120 NEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCE-NIKLNKLNNVIPILADNRDVEL-KDVADRVIMGYVH- 196 (272)
T ss_dssp TCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHH-HHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECCCS-
T ss_pred CCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCCEEEEECChHHcCc-cCCceEEEECCcc-
Confidence 458999999999999999875 58999998865554433 3444554 46677788777644 6789999997754
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 287 PWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 287 h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
....++.++.++|+|||.++++..
T Consensus 197 ----~~~~~l~~~~~~LkpgG~l~~s~~ 220 (272)
T 3a27_A 197 ----KTHKFLDKTFEFLKDRGVIHYHET 220 (272)
T ss_dssp ----SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred ----cHHHHHHHHHHHcCCCCEEEEEEc
Confidence 346789999999999999999854
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.71 E-value=5.4e-08 Score=97.78 Aligned_cols=133 Identities=17% Similarity=0.130 Sum_probs=90.4
Q ss_pred ceeEEeccCchhhHhhhhhCC---CeEEEEeccCccCcccHHHHHHh----cc---cceec-cccccCCCCC--Ccccee
Q 006905 470 YRNILDMNAHLGGFAAALIDF---PVWVMNVVPAEAKINTLGVIYER----GL---VGTYT-NWCEAMSTYP--RTYDLI 536 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~---~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~-~~~e~~~~yp--~t~Dli 536 (626)
-++|||+|||.|.++.+|++. +. .|+.+|.++.+++.+.++ |+ +.+.. |..+.+...+ .+||+|
T Consensus 64 ~~~VLdiG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 64 AKRILEIGTLGGYSTIWMARELPADG---QLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTC---EEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred CCEEEEecCCchHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 468999999999999999886 44 789999998999988776 54 23333 3333333344 499999
Q ss_pred eeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh------------HHHHHHHHH----HHhCCCeeEEeecCCCC
Q 006905 537 HADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV------------DELVKVKRI----IDALKWQSQIVDHEDGP 600 (626)
Q Consensus 537 h~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~------------~~~~~~~~~----~~~l~w~~~~~~~e~~~ 600 (626)
.++.. .-+...+|.++.|+|||||++++.+.. .....++++ ...-+|...+...- |.
T Consensus 141 ~~d~~------~~~~~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~-g~ 213 (248)
T 3tfw_A 141 FIDAD------KPNNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATALQTV-GT 213 (248)
T ss_dssp EECSC------GGGHHHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEEC-ST
T ss_pred EECCc------hHHHHHHHHHHHHhcCCCeEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCEEEEEeecC-CC
Confidence 98542 224567999999999999999986432 122334443 34446666554211 21
Q ss_pred CCcceEEEEEec
Q 006905 601 LEREKLLFAVKL 612 (626)
Q Consensus 601 ~~~e~~l~~~K~ 612 (626)
...+.+.+++|+
T Consensus 214 ~~~DG~~i~~~~ 225 (248)
T 3tfw_A 214 KGWDGFTLAWVN 225 (248)
T ss_dssp TCSEEEEEEEEC
T ss_pred CCCCeeEEEEEe
Confidence 235789999986
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.1e-08 Score=107.19 Aligned_cols=113 Identities=15% Similarity=0.148 Sum_probs=75.6
Q ss_pred HHHHHHHHhhcc----C-CCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHc-----CCCeEE
Q 006905 196 AYIDDIGKLINL----N-DGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALER-----GVPALI 261 (626)
Q Consensus 196 ~yi~~L~~ll~l----~-~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~er-----g~~~~~ 261 (626)
.|.+.|...+.. . .....+|||||||+|.++.+++++ .++++|+++ .+++.|+++ ...+.+
T Consensus 69 ~Y~e~m~~~~~~l~~~~p~p~~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp-----~vi~~Ar~~~~~~~~~rv~v 143 (317)
T 3gjy_A 69 EYMRWIATGARAFIDAHQDASKLRITHLGGGACTMARYFADVYPQSRNTVVELDA-----ELARLSREWFDIPRAPRVKI 143 (317)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCH-----HHHHHHHHHSCCCCTTTEEE
T ss_pred HHHHHHHHHHHhhcccCCCCCCCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCH-----HHHHHHHHhccccCCCceEE
Confidence 455555544432 2 222348999999999999999883 467777765 455555543 234677
Q ss_pred EEcccccC--CCCCCCeeEEEeccccccccc-c--HHHHHHHHHhcccCCeEEEEEe
Q 006905 262 GVLAAERL--PYPSRAFDMAHCSRCLIPWNQ-F--GGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 262 ~v~d~~~L--pf~d~sFDlV~~~~~l~h~~~-~--~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
.+.|...+ .+++++||+|++......... . ...+++++.|+|||||.|++..
T Consensus 144 ~~~Da~~~l~~~~~~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~ 200 (317)
T 3gjy_A 144 RVDDARMVAESFTPASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANC 200 (317)
T ss_dssp EESCHHHHHHTCCTTCEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECcHHHHHhhccCCCCCEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEe
Confidence 77775543 345689999998643321111 1 1689999999999999999864
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.3e-08 Score=102.39 Aligned_cols=97 Identities=12% Similarity=0.010 Sum_probs=72.6
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccC-CCC-----CCCeeE
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERL-PYP-----SRAFDM 278 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~L-pf~-----d~sFDl 278 (626)
..+|||||||+|..+..|++. .|+++|+++..+..+... ....++ .+.+..+|+... +.. +++||+
T Consensus 61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~-~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~ 139 (242)
T 3r3h_A 61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPY-WREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF 139 (242)
T ss_dssp CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHH-HHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence 458999999999999999873 689999999776654433 334454 477777775443 321 478999
Q ss_pred EEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 279 AHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 279 V~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
|++... ......++.++.++|||||++++..
T Consensus 140 V~~d~~----~~~~~~~l~~~~~~LkpGG~lv~d~ 170 (242)
T 3r3h_A 140 IFIDAD----KTNYLNYYELALKLVTPKGLIAIDN 170 (242)
T ss_dssp EEEESC----GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEcCC----hHHhHHHHHHHHHhcCCCeEEEEEC
Confidence 998653 3334678999999999999999974
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.1e-08 Score=104.95 Aligned_cols=118 Identities=12% Similarity=0.014 Sum_probs=73.3
Q ss_pred HHHHHHHHhhccCCCCCCEEEEeCCCC--chHHHHHhh-----CCcEEEeCCccchHHHHHHHHHHcCCCeEEEEccccc
Q 006905 196 AYIDDIGKLINLNDGSIRTAIDTGCGV--ASWGAYLLS-----RNIITMSFAPRDTHEAQVQFALERGVPALIGVLAAER 268 (626)
Q Consensus 196 ~yi~~L~~ll~l~~~~~~~VLDIGCGt--G~~a~~La~-----~~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~ 268 (626)
.|+.+..+.+.... ..+.|||||||+ +.....+++ ..|+++|.++.++..++..+.......+.+..+|...
T Consensus 64 ~fl~rav~~l~~~~-g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~ 142 (277)
T 3giw_A 64 DWMNRAVAHLAKEA-GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLD 142 (277)
T ss_dssp HHHHHHHHHHHHTS-CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTC
T ss_pred HHHHHHHHHhcccc-CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccC
Confidence 34444555554222 256899999997 323333332 3688888888666544332221101136778888766
Q ss_pred CC----CC--CCCee-----EEEecccccccccc--HHHHHHHHHhcccCCeEEEEEeC
Q 006905 269 LP----YP--SRAFD-----MAHCSRCLIPWNQF--GGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 269 Lp----f~--d~sFD-----lV~~~~~l~h~~~~--~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++ .+ .++|| .|+++.+|||..+. +..++.++.++|+|||+|+++..
T Consensus 143 ~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~ 201 (277)
T 3giw_A 143 PASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIG 201 (277)
T ss_dssp HHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEE
T ss_pred hhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEec
Confidence 42 11 34565 57788888555443 36899999999999999999853
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.70 E-value=4.3e-08 Score=102.45 Aligned_cols=110 Identities=15% Similarity=0.074 Sum_probs=75.4
Q ss_pred HHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCCCCCCC
Q 006905 202 GKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLPYPSRA 275 (626)
Q Consensus 202 ~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lpf~d~s 275 (626)
..++...+ +.+|||+|||+|..+..|++. .++++|+++..+..+.. .+...++ .+.+...|...++..+++
T Consensus 111 ~~~l~~~~--g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~-~~~~~g~~~v~~~~~D~~~~~~~~~~ 187 (315)
T 1ixk_A 111 PVALDPKP--GEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRL-NLSRLGVLNVILFHSSSLHIGELNVE 187 (315)
T ss_dssp HHHHCCCT--TCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHH-HHHHHTCCSEEEESSCGGGGGGGCCC
T ss_pred HHHhCCCC--CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH-HHHHhCCCeEEEEECChhhccccccc
Confidence 34444333 458999999999999998863 48899998765544333 3334455 467777787776655678
Q ss_pred eeEEEeccc------ccccc-------c--------cHHHHHHHHHhcccCCeEEEEEeC
Q 006905 276 FDMAHCSRC------LIPWN-------Q--------FGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 276 FDlV~~~~~------l~h~~-------~--------~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
||+|++... +.+.+ . ....+|.++.++|||||++++++.
T Consensus 188 fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stc 247 (315)
T 1ixk_A 188 FDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC 247 (315)
T ss_dssp EEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 999998421 21111 0 014789999999999999999864
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=4.2e-08 Score=100.48 Aligned_cols=115 Identities=14% Similarity=0.181 Sum_probs=86.3
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cccceeccccccCCCC--CCccceeeeccccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GLVGTYTNWCEAMSTY--PRTYDLIHADSVFS 543 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gli~~~~~~~e~~~~y--p~t~Dlih~~~~f~ 543 (626)
-.+|||+|||+|+|+..+++.+.- .|+.+|.++.+++.+.++ |+-..+.-.+.....+ +.+||+|.++..+
T Consensus 126 ~~~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p~- 202 (278)
T 2frn_A 126 DELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV- 202 (278)
T ss_dssp TCEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS-
T ss_pred CCEEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCch-
Confidence 357999999999999999987642 689999999999988765 4422111123333444 4899999885432
Q ss_pred cCCCCCCHHHHHHHhhhhccCCcEEEEEcC-------hHHHHHHHHHHHhCCCeeEE
Q 006905 544 LYKDRCETEDILLEMDRILRPEGGVIFRDD-------VDELVKVKRIIDALKWQSQI 593 (626)
Q Consensus 544 ~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~-------~~~~~~~~~~~~~l~w~~~~ 593 (626)
....++.++.|+|||||.+++.+. .+....+.+.++...|+..+
T Consensus 203 ------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 203 ------RTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp ------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred ------hHHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEE
Confidence 335788999999999999999643 24578889999999999876
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.2e-08 Score=108.12 Aligned_cols=98 Identities=16% Similarity=0.140 Sum_probs=75.4
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc---cceeccccccCCCCC-Cccceeeeccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL---VGTYTNWCEAMSTYP-RTYDLIHADSV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~~~~e~~~~yp-~t~Dlih~~~~ 541 (626)
-.+|||+|||.|.++..|++.+. ..|+.+|.+ .++..+.++ |+ +.+++.-.+.+ .+| .+||+|.+..+
T Consensus 67 ~~~VLDvGcG~G~~~~~la~~g~--~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~Iis~~~ 142 (349)
T 3q7e_A 67 DKVVLDVGSGTGILCMFAAKAGA--RKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEV-ELPVEKVDIIISEWM 142 (349)
T ss_dssp TCEEEEESCTTSHHHHHHHHTTC--SEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTC-CCSSSCEEEEEECCC
T ss_pred CCEEEEEeccchHHHHHHHHCCC--CEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHc-cCCCCceEEEEEccc
Confidence 35799999999999999998864 378899999 688877664 44 34444322333 356 89999999877
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
...+.....++.+|.+++|+|||||.+|+.
T Consensus 143 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 143 GYCLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp BBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred cccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 666555567899999999999999999753
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=4.2e-08 Score=103.89 Aligned_cols=138 Identities=20% Similarity=0.191 Sum_probs=95.2
Q ss_pred CCceeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHHHh----cc---cceeccccccCCCCCCccceeee
Q 006905 468 GRYRNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIYER----GL---VGTYTNWCEAMSTYPRTYDLIHA 538 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~~~~e~~~~yp~t~Dlih~ 538 (626)
....+|||+|||.|.++..|++. ++ +++.+|. +.+++.+.++ |+ +...+. ..+..+|..||+|.+
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~---~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~~~~~~~D~v~~ 254 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPHL---RGTLVEL-AGPAERARRRFADAGLADRVTVAEG--DFFKPLPVTADVVLL 254 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTC---EEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEEC--CTTSCCSCCEEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCC---EEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeC--CCCCcCCCCCCEEEE
Confidence 44678999999999999999875 33 6788888 6899888764 33 233321 122346766999999
Q ss_pred ccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC--h--H-----------------------HHHHHHHHHHhCCCee
Q 006905 539 DSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDD--V--D-----------------------ELVKVKRIIDALKWQS 591 (626)
Q Consensus 539 ~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~--~--~-----------------------~~~~~~~~~~~l~w~~ 591 (626)
..++.++.+. ....+|.++.|+|||||+++|.|. . + ....++++++.-.++.
T Consensus 255 ~~vl~~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~ 333 (374)
T 1qzz_A 255 SFVLLNWSDE-DALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLAL 333 (374)
T ss_dssp ESCGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEE
T ss_pred eccccCCCHH-HHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCce
Confidence 9999887642 224799999999999999999876 2 1 2345666777777776
Q ss_pred EEeecCCCCC--CcceEEEEEec
Q 006905 592 QIVDHEDGPL--EREKLLFAVKL 612 (626)
Q Consensus 592 ~~~~~e~~~~--~~e~~l~~~K~ 612 (626)
..+..-.+.. -...++.++|.
T Consensus 334 ~~~~~~~~~~~~~~~~~i~~~~~ 356 (374)
T 1qzz_A 334 ASERTSGSTTLPFDFSILEFTAV 356 (374)
T ss_dssp EEEEEECCSSCSSCEEEEEEEEC
T ss_pred EEEEECCCCcccCCcEEEEEEEC
Confidence 5332222221 11278888885
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.69 E-value=7.3e-08 Score=103.32 Aligned_cols=97 Identities=13% Similarity=0.141 Sum_probs=72.9
Q ss_pred CCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEcccccCCCCCCCeeEEEecc---
Q 006905 212 IRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAERLPYPSRAFDMAHCSR--- 283 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~Lpf~d~sFDlV~~~~--- 283 (626)
+++|||||||+|.++..+++. .|+++|.++ +. ..+.+.++.++.. +.+..++.+.+.++ +.||+|+|..
T Consensus 84 ~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~-~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~~ 160 (376)
T 4hc4_A 84 GKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IW-QQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMGY 160 (376)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-TH-HHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCBT
T ss_pred CCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HH-HHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeecccc
Confidence 458999999999988877775 589999876 44 3445566666653 67777788888776 5799999833
Q ss_pred ccccccccHHHHHHHHHhcccCCeEEEEE
Q 006905 284 CLIPWNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 284 ~l~h~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
++ ........++....|.|||||.++-.
T Consensus 161 ~l-~~e~~l~~~l~a~~r~Lkp~G~~iP~ 188 (376)
T 4hc4_A 161 GL-LHESMLSSVLHARTKWLKEGGLLLPA 188 (376)
T ss_dssp TB-TTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred cc-cccchhhhHHHHHHhhCCCCceECCc
Confidence 33 22333478889999999999998764
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=8.6e-09 Score=106.74 Aligned_cols=103 Identities=14% Similarity=0.038 Sum_probs=77.4
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-------------cceeccccccCC---CCC---
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-------------VGTYTNWCEAMS---TYP--- 530 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-------------i~~~~~~~e~~~---~yp--- 530 (626)
-.+|||+|||.|.++..|++.+. .+|+.+|.++.+++.+.++.- +..++.=++.+. .++
T Consensus 35 ~~~VLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 35 DITVLDLGCGKGGDLLKWKKGRI--NKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp CCEEEEETCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCEEEEECCCCcHHHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 45899999999999999987643 278999999999998887631 222332223332 242
Q ss_pred CccceeeeccccccC-CCCCCHHHHHHHhhhhccCCcEEEEEcCh
Q 006905 531 RTYDLIHADSVFSLY-KDRCETEDILLEMDRILRPEGGVIFRDDV 574 (626)
Q Consensus 531 ~t~Dlih~~~~f~~~-~~~c~~~~~l~E~dRiLRPgG~~i~~d~~ 574 (626)
.+||+|.|..++.+. .+.-+...+|.++.|+|||||.++++...
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 599999998888765 44335578999999999999999998654
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.69 E-value=9.8e-08 Score=94.89 Aligned_cols=107 Identities=17% Similarity=0.193 Sum_probs=72.3
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEccccc-CC-
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAER-LP- 270 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~-Lp- 270 (626)
.+..++...+ ..+|||||||+|.++..|++. .++++|+++..+..+.. .....+.. +.+..+|... ++
T Consensus 51 ~l~~l~~~~~--~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~-~~~~~g~~~~v~~~~~d~~~~~~~ 127 (239)
T 2hnk_A 51 FLNILTKISG--AKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARK-YWKENGLENKIFLKLGSALETLQV 127 (239)
T ss_dssp HHHHHHHHHT--CSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHH-HHHHTTCGGGEEEEESCHHHHHHH
T ss_pred HHHHHHHhhC--cCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCCEEEEECCHHHHHHH
Confidence 3444443333 458999999999999988864 58888887754443332 22233442 5666666432 22
Q ss_pred -------------CCC--CCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 271 -------------YPS--RAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 271 -------------f~d--~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
|++ ++||+|++.... .....++.++.++|||||.+++..
T Consensus 128 ~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~----~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 128 LIDSKSAPSWASDFAFGPSSIDLFFLDADK----ENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp HHHCSSCCGGGTTTCCSTTCEEEEEECSCG----GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred HHhhcccccccccccCCCCCcCEEEEeCCH----HHHHHHHHHHHHHcCCCeEEEEEc
Confidence 333 789999987543 234678999999999999999974
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.69 E-value=5.7e-08 Score=102.11 Aligned_cols=143 Identities=13% Similarity=0.192 Sum_probs=97.4
Q ss_pred HhhhhcCCCCC-ceeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHHHh----cc---cceec-cccccCC
Q 006905 459 TMNNQLGQSGR-YRNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIYER----GL---VGTYT-NWCEAMS 527 (626)
Q Consensus 459 ~~~~~~~~~~~-~r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~-~~~e~~~ 527 (626)
.++..+.. .. ..+|||+|||.|.++..|++. ++ .++.+|. +.+++.+.++ |+ +.... |..+.-.
T Consensus 169 ~~l~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 243 (352)
T 3mcz_A 169 DVVSELGV-FARARTVIDLAGGHGTYLAQVLRRHPQL---TGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARN 243 (352)
T ss_dssp HHHHTCGG-GTTCCEEEEETCTTCHHHHHHHHHCTTC---EEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGG
T ss_pred HHHHhCCC-cCCCCEEEEeCCCcCHHHHHHHHhCCCC---eEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcc
Confidence 34444444 33 789999999999999999875 33 5667788 4788877664 44 22222 2222111
Q ss_pred CCCCccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh--------------H-------------HHHHH
Q 006905 528 TYPRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV--------------D-------------ELVKV 580 (626)
Q Consensus 528 ~yp~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~--------------~-------------~~~~~ 580 (626)
..|..||+|.+..++.++.+. +...+|.++.|+|||||+++|.|.. + ....+
T Consensus 244 ~~~~~~D~v~~~~vlh~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 322 (352)
T 3mcz_A 244 FEGGAADVVMLNDCLHYFDAR-EAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWI 322 (352)
T ss_dssp GTTCCEEEEEEESCGGGSCHH-HHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHH
T ss_pred cCCCCccEEEEecccccCCHH-HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHH
Confidence 146789999999999988642 4578999999999999999997521 0 13456
Q ss_pred HHHHHhCCCeeEEeecCCCCCCcceEEEEEec
Q 006905 581 KRIIDALKWQSQIVDHEDGPLEREKLLFAVKL 612 (626)
Q Consensus 581 ~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K~ 612 (626)
+++++.-.++..... .+...+++++|+
T Consensus 323 ~~ll~~aGf~~~~~~-----~g~~~l~~a~kp 349 (352)
T 3mcz_A 323 AGVVRDAGLAVGERS-----IGRYTLLIGQRS 349 (352)
T ss_dssp HHHHHHTTCEEEEEE-----ETTEEEEEEECC
T ss_pred HHHHHHCCCceeeec-----cCceEEEEEecC
Confidence 677777777765421 245779999985
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=98.69 E-value=6.6e-08 Score=99.01 Aligned_cols=103 Identities=11% Similarity=0.027 Sum_probs=78.0
Q ss_pred CCceeEEeccCch---hhHhhhhhCC--CeEEEEeccCccCcccHHHHHHhc----ccceec-ccccc-----C----CC
Q 006905 468 GRYRNILDMNAHL---GGFAAALIDF--PVWVMNVVPAEAKINTLGVIYERG----LVGTYT-NWCEA-----M----ST 528 (626)
Q Consensus 468 ~~~r~vlD~g~g~---G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~~rg----li~~~~-~~~e~-----~----~~ 528 (626)
..++.|||+|||+ |.++..+... +. .|+.+|.++.||..+.++- -+..++ |..+. . ..
T Consensus 76 ~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~---~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~ 152 (274)
T 2qe6_A 76 AGISQFLDLGSGLPTVQNTHEVAQSVNPDA---RVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRM 152 (274)
T ss_dssp TCCCEEEEETCCSCCSSCHHHHHHHHCTTC---EEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHH
T ss_pred cCCCEEEEECCCCCCCChHHHHHHHhCCCC---EEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhcc
Confidence 3478999999999 9887666542 33 7899999999999988763 122232 21110 0 13
Q ss_pred CC-CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh
Q 006905 529 YP-RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV 574 (626)
Q Consensus 529 yp-~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~ 574 (626)
+| .+||+|.+..+|.+..+. +...+|.|+.|+|||||+++|++..
T Consensus 153 ~d~~~~d~v~~~~vlh~~~d~-~~~~~l~~~~~~L~pGG~l~i~~~~ 198 (274)
T 2qe6_A 153 IDFSRPAAIMLVGMLHYLSPD-VVDRVVGAYRDALAPGSYLFMTSLV 198 (274)
T ss_dssp CCTTSCCEEEETTTGGGSCTT-THHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred CCCCCCEEEEEechhhhCCcH-HHHHHHHHHHHhCCCCcEEEEEEec
Confidence 55 689999999999998875 7899999999999999999998643
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=2.9e-08 Score=103.51 Aligned_cols=98 Identities=16% Similarity=0.133 Sum_probs=65.4
Q ss_pred CCEEEEeCCCCchHHHHHhhC-CcEEEeC----CccchHHHHHHHHHHcCC-CeEEEEc-ccccCCCCCCCeeEEEeccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-NIITMSF----APRDTHEAQVQFALERGV-PALIGVL-AAERLPYPSRAFDMAHCSRC 284 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-~V~avdi----s~~dls~a~i~~A~erg~-~~~~~v~-d~~~Lpf~d~sFDlV~~~~~ 284 (626)
+.+|||||||+|.++..++++ .|+++|+ ++.++.... ....+. .+.+... |...+| .++||+|+|..+
T Consensus 83 g~~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~D~~~l~--~~~fD~V~sd~~ 157 (305)
T 2p41_A 83 EGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIP---MSTYGWNLVRLQSGVDVFFIP--PERCDTLLCDIG 157 (305)
T ss_dssp CEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCC---CCSTTGGGEEEECSCCTTTSC--CCCCSEEEECCC
T ss_pred CCEEEEEcCCCCHHHHHHHhcCCEEEEeccccCchhHHHHHH---hhhcCCCCeEEEeccccccCC--cCCCCEEEECCc
Confidence 569999999999999999987 6889998 332221000 011111 2455555 555554 568999999776
Q ss_pred cc--cccccHH---HHHHHHHhcccCCeEEEEEeC
Q 006905 285 LI--PWNQFGG---IYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 285 l~--h~~~~~~---~~L~Ei~RvLKPGG~lvis~p 314 (626)
++ ++..+.. .+|.++.++|||||.|++...
T Consensus 158 ~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~ 192 (305)
T 2p41_A 158 ESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 192 (305)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred cccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 52 2222222 578999999999999998653
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=5.1e-08 Score=103.36 Aligned_cols=97 Identities=19% Similarity=0.153 Sum_probs=71.5
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHc----C-CCeEEEEcccccCCCCCCCeeEEEeccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALER----G-VPALIGVLAAERLPYPSRAFDMAHCSRC 284 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~er----g-~~~~~~v~d~~~Lpf~d~sFDlV~~~~~ 284 (626)
..+|||||||+|.++..++++ ++.++.+ |+ +..++.++++ + ..+.+..+|....|.+ .+|+|++..+
T Consensus 180 ~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~---dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~--~~D~~~~~~v 253 (353)
T 4a6d_A 180 FPLMCDLGGGAGALAKECMSLYPGCKITVF---DI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP--EADLYILARV 253 (353)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCSSCEEEEE---EC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCC--CCSEEEEESS
T ss_pred CCeEEeeCCCCCHHHHHHHHhCCCceeEec---cC-HHHHHHHHHhhhhcccCceeeecCccccCCCC--CceEEEeeee
Confidence 458999999999999999987 4433333 22 2334444432 1 2467777886655554 4799999999
Q ss_pred cccccccH-HHHHHHHHhcccCCeEEEEEeC
Q 006905 285 LIPWNQFG-GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 285 l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+|+|.++. ..+|+++.++|+|||.++|...
T Consensus 254 lh~~~d~~~~~iL~~~~~al~pgg~lli~e~ 284 (353)
T 4a6d_A 254 LHDWADGKCSHLLERIYHTCKPGGGILVIES 284 (353)
T ss_dssp GGGSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred cccCCHHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence 99998754 6789999999999999999764
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=4.2e-08 Score=103.70 Aligned_cols=102 Identities=10% Similarity=0.178 Sum_probs=76.2
Q ss_pred hhcCCCCCceeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHHHh----cc---cceeccccccCCCCC-C
Q 006905 462 NQLGQSGRYRNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIYER----GL---VGTYTNWCEAMSTYP-R 531 (626)
Q Consensus 462 ~~~~~~~~~r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~~~~e~~~~yp-~ 531 (626)
..+.. ....+|||+|||.|.++..|+++ ++ +++.+|. +.+++.+.++ |+ +.... ..+...| .
T Consensus 184 ~~~~~-~~~~~vLDvG~G~G~~~~~l~~~~p~~---~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~~~~~ 255 (359)
T 1x19_A 184 EEAKL-DGVKKMIDVGGGIGDISAAMLKHFPEL---DSTILNL-PGAIDLVNENAAEKGVADRMRGIA---VDIYKESYP 255 (359)
T ss_dssp HHCCC-TTCCEEEEESCTTCHHHHHHHHHCTTC---EEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEE---CCTTTSCCC
T ss_pred HhcCC-CCCCEEEEECCcccHHHHHHHHHCCCC---eEEEEec-HHHHHHHHHHHHhcCCCCCEEEEe---CccccCCCC
Confidence 33444 45679999999999999999875 33 6778888 6999988776 54 33332 3333323 3
Q ss_pred ccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 532 TYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 532 t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
.+|+|.+..++.++.+. ....+|.++.|+|||||.++|.|
T Consensus 256 ~~D~v~~~~vlh~~~d~-~~~~~l~~~~~~L~pgG~l~i~e 295 (359)
T 1x19_A 256 EADAVLFCRILYSANEQ-LSTIMCKKAFDAMRSGGRLLILD 295 (359)
T ss_dssp CCSEEEEESCGGGSCHH-HHHHHHHHHHTTCCTTCEEEEEE
T ss_pred CCCEEEEechhccCCHH-HHHHHHHHHHHhcCCCCEEEEEe
Confidence 44999999999988642 35789999999999999999876
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.67 E-value=6.2e-08 Score=98.61 Aligned_cols=105 Identities=17% Similarity=0.157 Sum_probs=74.0
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCCCC
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLPYP 272 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lpf~ 272 (626)
.+...+...+ +.+|||+|||+|.++..+++. .++++|+++..+..+.. .+...++ .+.+...|.... ++
T Consensus 103 ~i~~~~~~~~--~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~-~~ 178 (277)
T 1o54_A 103 FIAMMLDVKE--GDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAES-NLTKWGLIERVTIKVRDISEG-FD 178 (277)
T ss_dssp HHHHHTTCCT--TCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHH-HHHHTTCGGGEEEECCCGGGC-CS
T ss_pred HHHHHhCCCC--CCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH-HHHHcCCCCCEEEEECCHHHc-cc
Confidence 4444444433 458999999999999888765 47888887754443332 2333354 466666776555 66
Q ss_pred CCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 273 SRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 273 d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+++||+|+++. .++..++.++.++|+|||.+++..+
T Consensus 179 ~~~~D~V~~~~------~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (277)
T 1o54_A 179 EKDVDALFLDV------PDPWNYIDKCWEALKGGGRFATVCP 214 (277)
T ss_dssp CCSEEEEEECC------SCGGGTHHHHHHHEEEEEEEEEEES
T ss_pred CCccCEEEECC------cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 77899999843 2346789999999999999999865
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=2.9e-08 Score=103.69 Aligned_cols=102 Identities=15% Similarity=0.130 Sum_probs=73.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHH-Hc----CCCeEEEEccccc-CCCCCCCeeEEE
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFAL-ER----GVPALIGVLAAER-LPYPSRAFDMAH 280 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~-er----g~~~~~~v~d~~~-Lpf~d~sFDlV~ 280 (626)
...+|||||||+|.++..++++ .++++|+++..+..+...+.. .. ...+.+..+|... ++..+++||+|+
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence 3568999999999999999876 588899877555444333322 11 2346777777554 444567899999
Q ss_pred eccccccc---cc--c--HHHHHHHHHhcccCCeEEEEEe
Q 006905 281 CSRCLIPW---NQ--F--GGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 281 ~~~~l~h~---~~--~--~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+.... ++ .. . ...++.++.++|||||.|++..
T Consensus 157 ~d~~~-~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 157 IDLTD-PVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EECCC-CBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred ECCCC-cccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 97654 44 11 1 2689999999999999999964
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.3e-07 Score=97.45 Aligned_cols=117 Identities=16% Similarity=0.161 Sum_probs=78.3
Q ss_pred cHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEcccc
Q 006905 193 GADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAE 267 (626)
Q Consensus 193 ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~ 267 (626)
.....++.+.+.+.... ..+|||+|||+|.++..|+.. .++++|+++..+..+.. .+...++. +.+...|..
T Consensus 107 ~te~lv~~~l~~~~~~~--~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~-n~~~~~l~~~v~~~~~D~~ 183 (284)
T 1nv8_A 107 ETEELVELALELIRKYG--IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARK-NAERHGVSDRFFVRKGEFL 183 (284)
T ss_dssp THHHHHHHHHHHHHHHT--CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHH-HHHHTTCTTSEEEEESSTT
T ss_pred hHHHHHHHHHHHhcccC--CCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCceEEEECcch
Confidence 34455556665554322 348999999999999998875 68888888765544333 33344553 677777755
Q ss_pred cCCCCCCCe---eEEEecccccccc---------c---------cHHHHHHHHH-hcccCCeEEEEEeC
Q 006905 268 RLPYPSRAF---DMAHCSRCLIPWN---------Q---------FGGIYLIEVD-RVLRPGGYWILSGP 314 (626)
Q Consensus 268 ~Lpf~d~sF---DlV~~~~~l~h~~---------~---------~~~~~L~Ei~-RvLKPGG~lvis~p 314 (626)
. +++ ++| |+|+++...+... + +...+++++. +.|+|||.|++...
T Consensus 184 ~-~~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~ 250 (284)
T 1nv8_A 184 E-PFK-EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG 250 (284)
T ss_dssp G-GGG-GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred h-hcc-cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 4 222 478 9999984332111 1 1126899999 99999999999754
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=4.4e-08 Score=90.63 Aligned_cols=132 Identities=14% Similarity=0.141 Sum_probs=83.0
Q ss_pred ceeEEeccCchhhHhhhhhCC---CeEEEEeccCccCcccHHHHHHhcccceec-cccccCCC-------CC-Cccceee
Q 006905 470 YRNILDMNAHLGGFAAALIDF---PVWVMNVVPAEAKINTLGVIYERGLVGTYT-NWCEAMST-------YP-RTYDLIH 537 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~---~v~~mnv~~~~~~~~~l~~~~~rgli~~~~-~~~e~~~~-------yp-~t~Dlih 537 (626)
-.+|||+|||.|.++.+|++. +. +|+.+|.++ +++. .. +...+ |..+ ... ++ ++||+|.
T Consensus 23 ~~~vLd~G~G~G~~~~~l~~~~~~~~---~v~~~D~~~-~~~~---~~-~~~~~~d~~~-~~~~~~~~~~~~~~~~D~i~ 93 (180)
T 1ej0_A 23 GMTVVDLGAAPGGWSQYVVTQIGGKG---RIIACDLLP-MDPI---VG-VDFLQGDFRD-ELVMKALLERVGDSKVQVVM 93 (180)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCTTC---EEEEEESSC-CCCC---TT-EEEEESCTTS-HHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEeCCCCCHHHHHHHHHhCCCC---eEEEEECcc-cccc---Cc-EEEEEccccc-chhhhhhhccCCCCceeEEE
Confidence 458999999999999999876 23 677777775 5543 11 23332 2211 110 44 8999999
Q ss_pred eccccccCCCC--CC------HHHHHHHhhhhccCCcEEEEEcCh-HHHHHHHHHHHhCCCeeEE-eec-CCCCCCcceE
Q 006905 538 ADSVFSLYKDR--CE------TEDILLEMDRILRPEGGVIFRDDV-DELVKVKRIIDALKWQSQI-VDH-EDGPLEREKL 606 (626)
Q Consensus 538 ~~~~f~~~~~~--c~------~~~~l~E~dRiLRPgG~~i~~d~~-~~~~~~~~~~~~l~w~~~~-~~~-e~~~~~~e~~ 606 (626)
++..+...... .. ...+|.++.|+|||||.+++.... .....+.+.+... |+... ... .......|..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 172 (180)
T 1ej0_A 94 SDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSL-FTKVKVRKPDSSRARSREVY 172 (180)
T ss_dssp ECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHH-EEEEEEECCTTSCTTCCEEE
T ss_pred ECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHHh-hhhEEeecCCcccccCceEE
Confidence 98887654421 00 157899999999999999997532 2334444444443 65443 221 2223356888
Q ss_pred EEEEe
Q 006905 607 LFAVK 611 (626)
Q Consensus 607 l~~~K 611 (626)
+++++
T Consensus 173 ~~~~~ 177 (180)
T 1ej0_A 173 IVATG 177 (180)
T ss_dssp EEEEE
T ss_pred EEEcc
Confidence 88876
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.67 E-value=2.6e-08 Score=97.51 Aligned_cols=128 Identities=16% Similarity=0.180 Sum_probs=87.3
Q ss_pred ceeEEeccCchhhHhhhhhCC---CeEEEEeccCccCcccHHHHHHh----cc---cceec-cccccCCCCC-----Ccc
Q 006905 470 YRNILDMNAHLGGFAAALIDF---PVWVMNVVPAEAKINTLGVIYER----GL---VGTYT-NWCEAMSTYP-----RTY 533 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~---~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~-~~~e~~~~yp-----~t~ 533 (626)
-.+|||+|||.|.++.+|++. +. .|+.+|.++.+++.+.++ |+ +.+++ |..+.+..++ .+|
T Consensus 65 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 141 (225)
T 3tr6_A 65 AKKVIDIGTFTGYSAIAMGLALPKDG---TLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQY 141 (225)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCTTC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCE
T ss_pred CCEEEEeCCcchHHHHHHHHhCCCCC---EEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCc
Confidence 347999999999999999886 43 789999998999888776 43 33333 3323322233 799
Q ss_pred ceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh------------HHHHHHHHHH----HhCCCeeEEeecC
Q 006905 534 DLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV------------DELVKVKRII----DALKWQSQIVDHE 597 (626)
Q Consensus 534 Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~------------~~~~~~~~~~----~~l~w~~~~~~~e 597 (626)
|+|.++.. .-+...++.++.|+|||||++++.|.. .....++++. ..-+|...+...
T Consensus 142 D~v~~~~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~- 214 (225)
T 3tr6_A 142 DLIYIDAD------KANTDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQSENNQLIRLFNQKVYKDERVDMILIPI- 214 (225)
T ss_dssp EEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEECS-
T ss_pred cEEEECCC------HHHHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccChHHHHHHHHHHHHhcCCCeEEEEEEc-
Confidence 99997442 234678999999999999999997542 1122344433 334566665532
Q ss_pred CCCCCcceEEEEEec
Q 006905 598 DGPLEREKLLFAVKL 612 (626)
Q Consensus 598 ~~~~~~e~~l~~~K~ 612 (626)
.+.+++++|+
T Consensus 215 -----~dG~~~~~k~ 224 (225)
T 3tr6_A 215 -----GDGLTLARKK 224 (225)
T ss_dssp -----TTCEEEEEEC
T ss_pred -----CCccEEEEEC
Confidence 3568888874
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=2e-08 Score=106.02 Aligned_cols=96 Identities=15% Similarity=0.146 Sum_probs=71.2
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc---cceeccccccCCCCC-Cccceeeeccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL---VGTYTNWCEAMSTYP-RTYDLIHADSV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~~~~e~~~~yp-~t~Dlih~~~~ 541 (626)
-.+|||+|||+|.++..+++.+. ..|+.+|.+ .+++.+.++ |+ |.+++.-.+.+ .+| .+||+|.+..+
T Consensus 65 ~~~VLDiGcGtG~ls~~la~~g~--~~v~gvD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~Ivs~~~ 140 (340)
T 2fyt_A 65 DKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQS-EILYQAMDIIRLNKLEDTITLIKGKIEEV-HLPVEKVDVIISEWM 140 (340)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC--SEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTS-CCSCSCEEEEEECCC
T ss_pred CCEEEEeeccCcHHHHHHHHcCC--CEEEEEChH-HHHHHHHHHHHHcCCCCcEEEEEeeHHHh-cCCCCcEEEEEEcCc
Confidence 45799999999999999998864 378889998 488877664 33 34444222222 355 89999999875
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEE
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVI 569 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i 569 (626)
.....+.-+++.+|.++.|+|||||.++
T Consensus 141 ~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 141 GYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp BTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred hhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 4434333466789999999999999998
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.2e-08 Score=101.46 Aligned_cols=95 Identities=19% Similarity=0.119 Sum_probs=62.1
Q ss_pred ceeEEeccCchhhHhhhhh--CCCeEEEEeccCccC-cccHHHH---HH----hcc--cceeccccccCCCCC----Ccc
Q 006905 470 YRNILDMNAHLGGFAAALI--DFPVWVMNVVPAEAK-INTLGVI---YE----RGL--VGTYTNWCEAMSTYP----RTY 533 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~--~~~v~~mnv~~~~~~-~~~l~~~---~~----rgl--i~~~~~~~e~~~~yp----~t~ 533 (626)
-..|||+|||.|.++..|+ ..+. +|+++|.+ +.|++++ .+ +|+ +.... .....+| ..+
T Consensus 25 ~~~vLDiGCG~G~~~~~la~~~~~~---~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~---~d~~~l~~~~~d~v 98 (225)
T 3p2e_A 25 DRVHIDLGTGDGRNIYKLAINDQNT---FYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVI---AAAESLPFELKNIA 98 (225)
T ss_dssp SEEEEEETCTTSHHHHHHHHTCTTE---EEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEEC---CBTTBCCGGGTTCE
T ss_pred CCEEEEEeccCcHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEE---cCHHHhhhhccCeE
Confidence 4679999999999999998 4444 89999999 7787776 33 344 22222 3333445 334
Q ss_pred ceeeecccccc--CCCCCCHHHHHHHhhhhccCCcEEEE
Q 006905 534 DLIHADSVFSL--YKDRCETEDILLEMDRILRPEGGVIF 570 (626)
Q Consensus 534 Dlih~~~~f~~--~~~~c~~~~~l~E~dRiLRPgG~~i~ 570 (626)
|.+++...+.. ...+-+...+|.|+.|+|||||.++|
T Consensus 99 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 99 DSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp EEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred EEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 44444221111 01112235789999999999999999
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.66 E-value=4.5e-08 Score=102.11 Aligned_cols=140 Identities=13% Similarity=0.191 Sum_probs=96.2
Q ss_pred hhhhcCCCCCceeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHHHh----cc---cceeccccccCCCCC
Q 006905 460 MNNQLGQSGRYRNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIYER----GL---VGTYTNWCEAMSTYP 530 (626)
Q Consensus 460 ~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~~~~e~~~~yp 530 (626)
++..+.. .. .+|||+|||.|.++..|++. +. .++.+|. +.+++.+.++ |+ +..... ..+..+|
T Consensus 160 ~~~~~~~-~~-~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~~~~ 231 (334)
T 2ip2_A 160 IPRLLDF-RG-RSFVDVGGGSGELTKAILQAEPSA---RGVMLDR-EGSLGVARDNLSSLLAGERVSLVGG--DMLQEVP 231 (334)
T ss_dssp HHHHSCC-TT-CEEEEETCTTCHHHHHHHHHCTTC---EEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEES--CTTTCCC
T ss_pred HHHhCCC-CC-CEEEEeCCCchHHHHHHHHHCCCC---EEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecC--CCCCCCC
Confidence 3333444 44 89999999999999999865 33 6788888 6899888775 32 333331 1223467
Q ss_pred CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh-------------H------------HHHHHHHHHH
Q 006905 531 RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV-------------D------------ELVKVKRIID 585 (626)
Q Consensus 531 ~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~-------------~------------~~~~~~~~~~ 585 (626)
..||+|.+..++.++.+. ....+|.++.|+|||||+++|.|.. + ....++++++
T Consensus 232 ~~~D~v~~~~vl~~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 310 (334)
T 2ip2_A 232 SNGDIYLLSRIIGDLDEA-ASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLG 310 (334)
T ss_dssp SSCSEEEEESCGGGCCHH-HHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHH
T ss_pred CCCCEEEEchhccCCCHH-HHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHH
Confidence 889999999999887642 3358999999999999999998531 0 1345566677
Q ss_pred hCCCeeEEeecCCCCCCcceEEEEEe
Q 006905 586 ALKWQSQIVDHEDGPLEREKLLFAVK 611 (626)
Q Consensus 586 ~l~w~~~~~~~e~~~~~~e~~l~~~K 611 (626)
.-.++..-+..-. ....|+.++|
T Consensus 311 ~aGf~~~~~~~~~---~~~~~i~~~~ 333 (334)
T 2ip2_A 311 RGGFAVERIVDLP---METRMIVAAR 333 (334)
T ss_dssp HTTEEEEEEEEET---TTEEEEEEEE
T ss_pred HCCCceeEEEECC---CCCEEEEEEe
Confidence 7777654322221 2356788776
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.66 E-value=4.7e-08 Score=103.07 Aligned_cols=114 Identities=6% Similarity=-0.054 Sum_probs=75.8
Q ss_pred HHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCC---eEEEEcccccCCC--
Q 006905 199 DDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVP---ALIGVLAAERLPY-- 271 (626)
Q Consensus 199 ~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~---~~~~v~d~~~Lpf-- 271 (626)
+.+.+.+.. .+.+.+|||+|||+|.++..++.. .|+++|+++..+..+..+.. ..++. +.+...|+..+..
T Consensus 142 ~~l~~~~~~-~~~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~-~~gl~~~~v~~i~~D~~~~l~~~ 219 (332)
T 2igt_A 142 EWLKNAVET-ADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQV-LAGLEQAPIRWICEDAMKFIQRE 219 (332)
T ss_dssp HHHHHHHHH-SSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHH-HHTCTTSCEEEECSCHHHHHHHH
T ss_pred HHHHHHHHh-cCCCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHH-HcCCCccceEEEECcHHHHHHHH
Confidence 344554431 123458999999999999999887 47788887765554443333 33543 6777777554321
Q ss_pred --CCCCeeEEEeccccc---------cccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 272 --PSRAFDMAHCSRCLI---------PWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 272 --~d~sFDlV~~~~~l~---------h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.+++||+|++..... ++..+...++.++.++|+|||+|++...
T Consensus 220 ~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~ 273 (332)
T 2igt_A 220 ERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA 273 (332)
T ss_dssp HHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred HhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEC
Confidence 156899999965321 1223346889999999999999888653
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.65 E-value=5.1e-08 Score=99.59 Aligned_cols=102 Identities=12% Similarity=-0.025 Sum_probs=73.0
Q ss_pred CCEEEEeCCCCchHHHHHhh-----CCcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCCC----CCCCeeEEEe
Q 006905 212 IRTAIDTGCGVASWGAYLLS-----RNIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLPY----PSRAFDMAHC 281 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~-----~~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lpf----~d~sFDlV~~ 281 (626)
+.+|||+|||+|.++..|++ ..++++|+++..+.... +.+...++ .+.+...|...++. .+++||+|++
T Consensus 84 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~-~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~ 162 (274)
T 3ajd_A 84 DDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALK-SNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILL 162 (274)
T ss_dssp TCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHH-HHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred cCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHH-HHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEEE
Confidence 55899999999999988886 25889999875554333 33344455 46677777666553 3578999998
Q ss_pred cccccc-----------------ccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 282 SRCLIP-----------------WNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 282 ~~~l~h-----------------~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
...... .......+|.++.++|||||.++++..
T Consensus 163 d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stc 212 (274)
T 3ajd_A 163 DAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTC 212 (274)
T ss_dssp EECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEES
T ss_pred cCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence 622111 113347899999999999999999864
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=4.5e-08 Score=95.83 Aligned_cols=133 Identities=18% Similarity=0.149 Sum_probs=87.0
Q ss_pred ceeEEeccCchhhHhhhhhCC---CeEEEEeccCccCcccHHHHHHh----cc---cceec-cccccCCCCC----Cccc
Q 006905 470 YRNILDMNAHLGGFAAALIDF---PVWVMNVVPAEAKINTLGVIYER----GL---VGTYT-NWCEAMSTYP----RTYD 534 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~---~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~-~~~e~~~~yp----~t~D 534 (626)
-.+|||+|||.|.++.+|++. +. .|+.+|.++.++..+.++ |+ +.+++ |..+.+..++ .+||
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 59 ARNILEIGTLGGYSTIWLARGLSSGG---RVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCSSC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred CCEEEEecCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 457999999999999999887 44 789999998899887765 44 33333 2222222222 5799
Q ss_pred eeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh------------HHHHHHHHHH----HhCCCeeEEeecCC
Q 006905 535 LIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV------------DELVKVKRII----DALKWQSQIVDHED 598 (626)
Q Consensus 535 lih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~------------~~~~~~~~~~----~~l~w~~~~~~~e~ 598 (626)
+|.++.... ....+|.++.|+|||||.+++.+.. .....++++. ..=+|...+.-.-
T Consensus 136 ~v~~d~~~~------~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~- 208 (223)
T 3duw_A 136 FIFIDADKQ------NNPAYFEWALKLSRPGTVIIGDNVVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVSATALQTV- 208 (223)
T ss_dssp EEEECSCGG------GHHHHHHHHHHTCCTTCEEEEESCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEEE-
T ss_pred EEEEcCCcH------HHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCeEEEEEecc-
Confidence 999865422 4568999999999999999986432 1123334433 3345666654330
Q ss_pred CCCCcceEEEEEec
Q 006905 599 GPLEREKLLFAVKL 612 (626)
Q Consensus 599 ~~~~~e~~l~~~K~ 612 (626)
+..+.+.+++++|+
T Consensus 209 ~~~~~dG~~~~~~~ 222 (223)
T 3duw_A 209 GSKGYDGFIMAVVK 222 (223)
T ss_dssp ETTEEEEEEEEEEC
T ss_pred CCCCCCeeEEEEEe
Confidence 11134678888763
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=3.5e-08 Score=104.35 Aligned_cols=93 Identities=14% Similarity=0.081 Sum_probs=70.0
Q ss_pred CCEEEEeCCCCchHHHHHhhC--C--cEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--N--IITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIP 287 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~--V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h 287 (626)
..+|||||||+|.++..++++ + ++++|+ + .+++.+++. ..+.+..+|... +++ .||+|+++.++|+
T Consensus 194 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-----~~~~~a~~~-~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~ 263 (358)
T 1zg3_A 194 LESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-P-----QVVGNLTGN-ENLNFVGGDMFK-SIP--SADAVLLKWVLHD 263 (358)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-H-----HHHSSCCCC-SSEEEEECCTTT-CCC--CCSEEEEESCGGG
T ss_pred CCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-H-----HHHhhcccC-CCcEEEeCccCC-CCC--CceEEEEcccccC
Confidence 458999999999999999886 3 455565 2 344444332 236777777665 665 4999999999988
Q ss_pred ccccH-HHHHHHHHhcccC---CeEEEEEeC
Q 006905 288 WNQFG-GIYLIEVDRVLRP---GGYWILSGP 314 (626)
Q Consensus 288 ~~~~~-~~~L~Ei~RvLKP---GG~lvis~p 314 (626)
|.+.. ..+|+++.++||| ||++++...
T Consensus 264 ~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~ 294 (358)
T 1zg3_A 264 WNDEQSLKILKNSKEAISHKGKDGKVIIIDI 294 (358)
T ss_dssp SCHHHHHHHHHHHHHHTGGGGGGCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 87642 4899999999999 999999753
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.64 E-value=9.4e-08 Score=110.34 Aligned_cols=102 Identities=11% Similarity=0.180 Sum_probs=76.6
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----------cc--cceeccccccCCCCCCccceee
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----------GL--VGTYTNWCEAMSTYPRTYDLIH 537 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----------gl--i~~~~~~~e~~~~yp~t~Dlih 537 (626)
-.+|||+|||.|.++..|++.+-...+|+++|.++.+++.+.+| |+ +.+++.-.+.+..-.++||+|.
T Consensus 722 g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlVV 801 (950)
T 3htx_A 722 ASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIGT 801 (950)
T ss_dssp CSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEEE
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEEE
Confidence 45799999999999999999862112799999999999999873 43 3344422222222238999999
Q ss_pred eccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 538 ADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 538 ~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
+..+|.|..+. ....++.|+.|+|||| .+||+..
T Consensus 802 ~~eVLeHL~dp-~l~~~L~eI~RvLKPG-~LIISTP 835 (950)
T 3htx_A 802 CLEVIEHMEED-QACEFGEKVLSLFHPK-LLIVSTP 835 (950)
T ss_dssp EESCGGGSCHH-HHHHHHHHHHHTTCCS-EEEEEEC
T ss_pred EeCchhhCChH-HHHHHHHHHHHHcCCC-EEEEEec
Confidence 99999998752 2346899999999999 8888653
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.63 E-value=8.7e-08 Score=95.23 Aligned_cols=97 Identities=18% Similarity=0.163 Sum_probs=69.2
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccc----cCCCCC--CCeeE
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAE----RLPYPS--RAFDM 278 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~----~Lpf~d--~sFDl 278 (626)
..+|||||||+|..+..|++. .++++|+++..+..+...+ ...+. .+.+..+++. .++..+ ++||+
T Consensus 73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~-~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYW-QKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHH-HHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 348999999999999999875 5888888775444333322 23344 3566666642 233434 78999
Q ss_pred EEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 279 AHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 279 V~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
|++... ..+...++.++.++|||||++++..
T Consensus 152 V~~d~~----~~~~~~~l~~~~~~LkpgG~lv~~~ 182 (232)
T 3cbg_A 152 IFIDAD----KRNYPRYYEIGLNLLRRGGLMVIDN 182 (232)
T ss_dssp EEECSC----GGGHHHHHHHHHHTEEEEEEEEEEC
T ss_pred EEECCC----HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 998653 2334789999999999999999974
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.63 E-value=5.9e-08 Score=99.50 Aligned_cols=102 Identities=8% Similarity=0.055 Sum_probs=71.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHH----cCCCeEEEEccccc-CCCCCCCeeEEEe
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALE----RGVPALIGVLAAER-LPYPSRAFDMAHC 281 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~e----rg~~~~~~v~d~~~-Lpf~d~sFDlV~~ 281 (626)
...+|||||||+|.++..++++ .++++|+++..+..+...+..- ....+.+..+|... ++..+++||+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 3568999999999999999876 5788888775444333322211 12346777777544 4444678999999
Q ss_pred cccccccccc----HHHHHHHHHhcccCCeEEEEEe
Q 006905 282 SRCLIPWNQF----GGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 282 ~~~l~h~~~~----~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
.... ++... ...+++++.++|+|||.+++..
T Consensus 155 d~~~-~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 155 DSTE-PVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp SCSS-CCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 6543 33211 1579999999999999999974
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.6e-07 Score=99.91 Aligned_cols=140 Identities=14% Similarity=0.158 Sum_probs=97.8
Q ss_pred hcCCCCCceeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHHHh----cc---cceeccccccCCCCCCcc
Q 006905 463 QLGQSGRYRNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIYER----GL---VGTYTNWCEAMSTYPRTY 533 (626)
Q Consensus 463 ~~~~~~~~r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~~~~e~~~~yp~t~ 533 (626)
.+.. ....+|||+|||.|.++..|++. ++ .++.+|. +.+++.+.++ |+ +..... ..+..+|..|
T Consensus 197 ~~~~-~~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~--d~~~~~p~~~ 269 (369)
T 3gwz_A 197 AYDF-SGAATAVDIGGGRGSLMAAVLDAFPGL---RGTLLER-PPVAEEARELLTGRGLADRCEILPG--DFFETIPDGA 269 (369)
T ss_dssp HSCC-TTCSEEEEETCTTSHHHHHHHHHCTTC---EEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEEC--CTTTCCCSSC
T ss_pred hCCC-ccCcEEEEeCCCccHHHHHHHHHCCCC---eEEEEcC-HHHHHHHHHhhhhcCcCCceEEecc--CCCCCCCCCc
Confidence 3444 56789999999999999999875 33 5677888 6888877764 43 333321 2224567789
Q ss_pred ceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh------------H------------HHHHHHHHHHhCCC
Q 006905 534 DLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV------------D------------ELVKVKRIIDALKW 589 (626)
Q Consensus 534 Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~------------~------------~~~~~~~~~~~l~w 589 (626)
|+|.+..++.++.+. ....+|.++.|+|||||+++|.|.. + ....++++++.-.+
T Consensus 270 D~v~~~~vlh~~~d~-~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf 348 (369)
T 3gwz_A 270 DVYLIKHVLHDWDDD-DVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGL 348 (369)
T ss_dssp SEEEEESCGGGSCHH-HHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTE
T ss_pred eEEEhhhhhccCCHH-HHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCC
Confidence 999999999887642 2247999999999999999997521 0 14566777888888
Q ss_pred eeEEeecCCCCCCcceEEEEEec
Q 006905 590 QSQIVDHEDGPLEREKLLFAVKL 612 (626)
Q Consensus 590 ~~~~~~~e~~~~~~e~~l~~~K~ 612 (626)
+..-+..- ......|+.++|.
T Consensus 349 ~~~~~~~~--~~~~~svie~~~a 369 (369)
T 3gwz_A 349 RVERSLPC--GAGPVRIVEIRRA 369 (369)
T ss_dssp EEEEEEEC--SSSSEEEEEEEEC
T ss_pred eEEEEEEC--CCCCcEEEEEEeC
Confidence 77644321 1134678888763
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.3e-07 Score=98.05 Aligned_cols=101 Identities=13% Similarity=0.048 Sum_probs=69.3
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHH-c---CCCeEEEEccccc-CCCCCCCeeEEEec
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALE-R---GVPALIGVLAAER-LPYPSRAFDMAHCS 282 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~e-r---g~~~~~~v~d~~~-Lpf~d~sFDlV~~~ 282 (626)
..+|||||||+|.++..++++ .++++|+++..+..+...+... . ...+.+...|... ++..+++||+|++.
T Consensus 91 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d 170 (296)
T 1inl_A 91 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIID 170 (296)
T ss_dssp CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEEc
Confidence 468999999999999999876 5788888775554433332210 1 2346777777543 44446789999985
Q ss_pred cccccccc-----cHHHHHHHHHhcccCCeEEEEEe
Q 006905 283 RCLIPWNQ-----FGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 283 ~~l~h~~~-----~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
..- ++.. ....++.++.++|||||.|++..
T Consensus 171 ~~~-~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 205 (296)
T 1inl_A 171 STD-PTAGQGGHLFTEEFYQACYDALKEDGVFSAET 205 (296)
T ss_dssp C-----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCC-cccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 432 3111 12688999999999999999974
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.6e-07 Score=95.18 Aligned_cols=118 Identities=11% Similarity=0.088 Sum_probs=84.7
Q ss_pred CceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc-------c---cceeccccccCCC---------C
Q 006905 469 RYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG-------L---VGTYTNWCEAMST---------Y 529 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg-------l---i~~~~~~~e~~~~---------y 529 (626)
.-.+|||+|||.|.++..|+++.- ..+|+.+|.++.+++.+.++- + +.+++ .++.. +
T Consensus 36 ~~~~VLDlG~G~G~~~l~la~~~~-~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~---~D~~~~~~~~~~~~~ 111 (260)
T 2ozv_A 36 RACRIADLGAGAGAAGMAVAARLE-KAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLE---ADVTLRAKARVEAGL 111 (260)
T ss_dssp SCEEEEECCSSSSHHHHHHHHHCT-TEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEE---CCTTCCHHHHHHTTC
T ss_pred CCCEEEEeCChHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEe---CCHHHHhhhhhhhcc
Confidence 356899999999999999987620 138999999999999887743 2 23343 33332 3
Q ss_pred C-CccceeeeccccccC---------------CCCCCHHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHhCCCee
Q 006905 530 P-RTYDLIHADSVFSLY---------------KDRCETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQS 591 (626)
Q Consensus 530 p-~t~Dlih~~~~f~~~---------------~~~c~~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~l~w~~ 591 (626)
+ .+||+|.++--|... ...+.++.++.++.|+|||||++++--..+.+..+...++.- |..
T Consensus 112 ~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~-~~~ 188 (260)
T 2ozv_A 112 PDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAEIIAACGSR-FGG 188 (260)
T ss_dssp CTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGGHHHHHHHHTTT-EEE
T ss_pred CCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHHHHHHHHHHHhc-CCc
Confidence 4 899999998444322 234668899999999999999999987777777777777663 654
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=98.62 E-value=6.3e-08 Score=95.10 Aligned_cols=136 Identities=13% Similarity=0.071 Sum_probs=88.3
Q ss_pred ceeEEeccCchhhHhhhhhCC---CeEEEEeccCccCcccHHHHHHh----cc---cceec-cccccCCCCC-----Ccc
Q 006905 470 YRNILDMNAHLGGFAAALIDF---PVWVMNVVPAEAKINTLGVIYER----GL---VGTYT-NWCEAMSTYP-----RTY 533 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~---~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~-~~~e~~~~yp-----~t~ 533 (626)
-.+|||+|||.|.++.+|++. +. .|+.+|.++.+++.+.++ |+ +.+++ |..+.+..++ .+|
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 59 PSLVLELGAYCGYSAVRMARLLQPGA---RLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCC---EEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence 468999999999999999873 43 789999999999988774 44 33333 3334344444 699
Q ss_pred ceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcChH--HHHHHHHHHHhCCCeeEEeec-CCCCCCcceEEEEE
Q 006905 534 DLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDVD--ELVKVKRIIDALKWQSQIVDH-EDGPLEREKLLFAV 610 (626)
Q Consensus 534 Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~~--~~~~~~~~~~~l~w~~~~~~~-e~~~~~~e~~l~~~ 610 (626)
|+|.++....++. ....++.++ |+|||||.+++.+... .-.-++.+...=+++..++.. .......+.+.+++
T Consensus 136 D~V~~d~~~~~~~---~~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dG~~~~~ 211 (221)
T 3u81_A 136 DMVFLDHWKDRYL---PDTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAI 211 (221)
T ss_dssp SEEEECSCGGGHH---HHHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHHHCTTEEEEEEEEEETTTTEEEEEEEEE
T ss_pred EEEEEcCCcccch---HHHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHhhCCCceEEEcccccccCCCCCceEEEE
Confidence 9999976655543 123567777 9999999999976431 111222233344566665431 11122456788887
Q ss_pred ec
Q 006905 611 KL 612 (626)
Q Consensus 611 K~ 612 (626)
+.
T Consensus 212 ~~ 213 (221)
T 3u81_A 212 YQ 213 (221)
T ss_dssp EC
T ss_pred Ee
Confidence 64
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=5.5e-08 Score=101.27 Aligned_cols=102 Identities=12% Similarity=0.079 Sum_probs=69.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHH----cCCCeEEEEccccc-CCCCCCCeeEEEe
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALE----RGVPALIGVLAAER-LPYPSRAFDMAHC 281 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~e----rg~~~~~~v~d~~~-Lpf~d~sFDlV~~ 281 (626)
...+|||||||+|.++..++++ .++++|+++..+..+...+... ....+.+...|... ++..+++||+|++
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~ 174 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT 174 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEE
Confidence 3569999999999999999876 4788888775554433332210 12346777777544 4445678999998
Q ss_pred cccccccccc----HHHHHHHHHhcccCCeEEEEEe
Q 006905 282 SRCLIPWNQF----GGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 282 ~~~l~h~~~~----~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
.... ++... ...+++++.++|||||.|++..
T Consensus 175 d~~~-~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 175 DSSD-PMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp ECC------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCC-CCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 6543 33211 1468999999999999999975
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.61 E-value=7e-08 Score=100.39 Aligned_cols=132 Identities=17% Similarity=0.246 Sum_probs=94.3
Q ss_pred ceeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHHHh----cc---cceeccccccCC--CCCCccceeee
Q 006905 470 YRNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIYER----GL---VGTYTNWCEAMS--TYPRTYDLIHA 538 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~~~~e~~~--~yp~t~Dlih~ 538 (626)
..+|||+|||.|.++..|++. +. .++.+|.+ .+++.+.++ |+ +...+ ..+. .+|..||+|.+
T Consensus 166 ~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~---~d~~~~~~~~~~D~v~~ 238 (335)
T 2r3s_A 166 PLKVLDISASHGLFGIAVAQHNPNA---EIFGVDWA-SVLEVAKENARIQGVASRYHTIA---GSAFEVDYGNDYDLVLL 238 (335)
T ss_dssp CSEEEEETCTTCHHHHHHHHHCTTC---EEEEEECH-HHHHHHHHHHHHHTCGGGEEEEE---SCTTTSCCCSCEEEEEE
T ss_pred CCEEEEECCCcCHHHHHHHHHCCCC---eEEEEecH-HHHHHHHHHHHhcCCCcceEEEe---cccccCCCCCCCcEEEE
Confidence 568999999999999999876 43 78889998 999888775 33 33333 2222 35666999999
Q ss_pred ccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcChH---------------------------HHHHHHHHHHhCCCee
Q 006905 539 DSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDVD---------------------------ELVKVKRIIDALKWQS 591 (626)
Q Consensus 539 ~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~~---------------------------~~~~~~~~~~~l~w~~ 591 (626)
..++.++.+. +...+|.++.|+|||||++++.|... ....++++++.-.++.
T Consensus 239 ~~~l~~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~ 317 (335)
T 2r3s_A 239 PNFLHHFDVA-TCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSH 317 (335)
T ss_dssp ESCGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSE
T ss_pred cchhccCCHH-HHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCe
Confidence 9999887532 45689999999999999999975320 1456677777777876
Q ss_pred EEeecCCCCCCcceEEEEEec
Q 006905 592 QIVDHEDGPLEREKLLFAVKL 612 (626)
Q Consensus 592 ~~~~~e~~~~~~e~~l~~~K~ 612 (626)
.-+..-.+ ...+++++++
T Consensus 318 ~~~~~~~~---~~~~i~~~~~ 335 (335)
T 2r3s_A 318 SQLHSLPT---TQQQVIVAYK 335 (335)
T ss_dssp EEEECCTT---SSSEEEEEEC
T ss_pred eeEEECCC---CceeEEEecC
Confidence 54332222 3467777654
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=2.7e-07 Score=90.49 Aligned_cols=97 Identities=15% Similarity=0.133 Sum_probs=69.6
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccC-C-CC--C--CCeeE
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERL-P-YP--S--RAFDM 278 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~L-p-f~--d--~sFDl 278 (626)
..+|||||||+|.++..|++. .++++|+++..+..+.. .....+. .+.+..+|.... + +. . ++||+
T Consensus 70 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~-~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~ 148 (229)
T 2avd_A 70 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRP-LWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV 148 (229)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHH-HHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccE
Confidence 458999999999999999874 58899998865554333 3334454 466777664332 1 11 1 68999
Q ss_pred EEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 279 AHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 279 V~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
|++... ......++.++.++|||||.+++..
T Consensus 149 v~~d~~----~~~~~~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 149 AVVDAD----KENCSAYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp EEECSC----STTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEECCC----HHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 999653 2334789999999999999999974
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=8.7e-08 Score=96.53 Aligned_cols=97 Identities=11% Similarity=0.014 Sum_probs=70.4
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEccccc-CCC------CCCCee
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAER-LPY------PSRAFD 277 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~-Lpf------~d~sFD 277 (626)
..+|||||||+|..+..|++. .++++|+++..+..+.. ...+.+. .+.+..+|+.. ++. ++++||
T Consensus 80 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~-~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 158 (247)
T 1sui_A 80 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLP-VIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 158 (247)
T ss_dssp CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHH-HHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBS
T ss_pred cCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEE
Confidence 458999999999999888764 58899998865544333 3334454 36677777543 332 157899
Q ss_pred EEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 278 MAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 278 lV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+|++... ......++.++.++|||||++++..
T Consensus 159 ~V~~d~~----~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 159 FIFVDAD----KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp EEEECSC----STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEEcCc----hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 9998653 2345789999999999999999874
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=3.3e-08 Score=98.93 Aligned_cols=112 Identities=14% Similarity=0.122 Sum_probs=76.8
Q ss_pred eeEEeccCchhhHhhhhhCC------CeEEEEeccCccCcccHHHHHHhc-ccceec-ccccc--CCCCC-Cccceeeec
Q 006905 471 RNILDMNAHLGGFAAALIDF------PVWVMNVVPAEAKINTLGVIYERG-LVGTYT-NWCEA--MSTYP-RTYDLIHAD 539 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~------~v~~mnv~~~~~~~~~l~~~~~rg-li~~~~-~~~e~--~~~yp-~t~Dlih~~ 539 (626)
.+|||+|||+|..++.|++. +. .|+.+|.++.++..+...+ -+.+++ |..+. +...+ .+||+|+++
T Consensus 83 ~~VLDiG~GtG~~t~~la~~~~~~~~~~---~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d 159 (236)
T 2bm8_A 83 RTIVELGVYNGGSLAWFRDLTKIMGIDC---QVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFID 159 (236)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHTTCCC---EEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEE
T ss_pred CEEEEEeCCCCHHHHHHHHhhhhcCCCC---EEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEEC
Confidence 47999999999999999874 33 6888999888877665211 133333 22221 12123 379999986
Q ss_pred cccccCCCCCCHHHHHHHhhh-hccCCcEEEEEcCh-----HHHHHHHHHHHhC--CCee
Q 006905 540 SVFSLYKDRCETEDILLEMDR-ILRPEGGVIFRDDV-----DELVKVKRIIDAL--KWQS 591 (626)
Q Consensus 540 ~~f~~~~~~c~~~~~l~E~dR-iLRPgG~~i~~d~~-----~~~~~~~~~~~~l--~w~~ 591 (626)
.. + .++..+|.|+.| +|||||++++.|.. .....+.++++.. .+++
T Consensus 160 ~~--~----~~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~ 213 (236)
T 2bm8_A 160 NA--H----ANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSM 213 (236)
T ss_dssp SS--C----SSHHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEE
T ss_pred Cc--h----HhHHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhCcccEEE
Confidence 54 2 267889999998 99999999997632 1123677777777 4554
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.9e-08 Score=94.06 Aligned_cols=100 Identities=17% Similarity=0.203 Sum_probs=74.5
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceec-cccccCCCC-CCccceeeeccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYT-NWCEAMSTY-PRTYDLIHADSV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~-~~~e~~~~y-p~t~Dlih~~~~ 541 (626)
-.+|||+|||+|.++..+++.+. -.|+.+|.++.+++.+.++ |+ +.+++ |+.+....+ +.+||+|.++..
T Consensus 45 ~~~vLDlgcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p 122 (189)
T 3p9n_A 45 GLAVLDLYAGSGALGLEALSRGA--ASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPP 122 (189)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTC--SEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCC
T ss_pred CCEEEEeCCCcCHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCC
Confidence 35799999999999998887764 2689999999999988775 33 33343 222222224 489999999877
Q ss_pred cccCCCCCCHHHHHHHhhh--hccCCcEEEEEcC
Q 006905 542 FSLYKDRCETEDILLEMDR--ILRPEGGVIFRDD 573 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dR--iLRPgG~~i~~d~ 573 (626)
|.+.. -+++.++.++.| +|+|||.+++...
T Consensus 123 ~~~~~--~~~~~~l~~~~~~~~L~pgG~l~~~~~ 154 (189)
T 3p9n_A 123 YNVDS--ADVDAILAALGTNGWTREGTVAVVERA 154 (189)
T ss_dssp TTSCH--HHHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred CCcch--hhHHHHHHHHHhcCccCCCeEEEEEec
Confidence 66532 256789999999 9999999999754
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=3.1e-07 Score=98.15 Aligned_cols=110 Identities=18% Similarity=0.053 Sum_probs=76.3
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCC
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLP 270 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lp 270 (626)
....+..+. .. .+.+|||+|||+|.++..++.. .++++|+++.++..+..+ +...|+ .+.+.++|+..++
T Consensus 206 la~~l~~~~-~~--~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n-~~~~gl~~~i~~~~~D~~~~~ 281 (373)
T 3tm4_A 206 IANAMIELA-EL--DGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMN-ALAAGVLDKIKFIQGDATQLS 281 (373)
T ss_dssp HHHHHHHHH-TC--CSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHH-HHHTTCGGGCEEEECCGGGGG
T ss_pred HHHHHHHhh-cC--CCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH-HHHcCCCCceEEEECChhhCC
Confidence 334444444 33 3458999999999999998875 689999988666544433 344565 5788889999999
Q ss_pred CCCCCeeEEEeccccccccc------c-HHHHHHHHHhcccCCeEEEEE
Q 006905 271 YPSRAFDMAHCSRCLIPWNQ------F-GGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 271 f~d~sFDlV~~~~~l~h~~~------~-~~~~L~Ei~RvLKPGG~lvis 312 (626)
+++++||+|+++..+..... + ...++.++.|+| ||.+++.
T Consensus 282 ~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i 328 (373)
T 3tm4_A 282 QYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFI 328 (373)
T ss_dssp GTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEE
T ss_pred cccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEE
Confidence 88889999999876432211 1 156888999999 4444444
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=5.8e-08 Score=99.91 Aligned_cols=98 Identities=13% Similarity=0.120 Sum_probs=69.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHc---------CCCeEEEEccccc-CCCCCCCe
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALER---------GVPALIGVLAAER-LPYPSRAF 276 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~er---------g~~~~~~v~d~~~-Lpf~d~sF 276 (626)
...+|||||||+|.++..+++. .++++|+++. +++.++++ ...+.+...|... ++..+++|
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~-----~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~f 152 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDET-----VIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTY 152 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHH-----HHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCE
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHH-----HHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCc
Confidence 4569999999999999999875 5788888664 44444432 2346677777544 33336789
Q ss_pred eEEEecccccccccc--H--HHHHHHHHhcccCCeEEEEEeC
Q 006905 277 DMAHCSRCLIPWNQF--G--GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 277 DlV~~~~~l~h~~~~--~--~~~L~Ei~RvLKPGG~lvis~p 314 (626)
|+|++.... ++... . ..+++++.++|||||.+++...
T Consensus 153 D~Ii~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 153 DVIIVDSSD-PIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp EEEEEECCC-TTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred eEEEEcCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence 999995433 33221 1 5899999999999999999753
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.59 E-value=8.8e-08 Score=93.11 Aligned_cols=93 Identities=17% Similarity=0.123 Sum_probs=69.6
Q ss_pred ceeEEeccCchhhHhhhhhCC---CeEEEEeccCccCcccHHHHHHh----cc---cceec-cccccCCCCCCccceeee
Q 006905 470 YRNILDMNAHLGGFAAALIDF---PVWVMNVVPAEAKINTLGVIYER----GL---VGTYT-NWCEAMSTYPRTYDLIHA 538 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~---~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~-~~~e~~~~yp~t~Dlih~ 538 (626)
-.+|||+|||.|.++.+|++. +. +|+.+|.++.+++.+.++ |+ +.+++ |..+.+...+. ||+|.+
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~ 132 (210)
T 3c3p_A 57 PQLVVVPGDGLGCASWWFARAISISS---RVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFM 132 (210)
T ss_dssp CSEEEEESCGGGHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEE
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEE
Confidence 357999999999999999876 33 788899998999887754 33 33333 23333334457 999988
Q ss_pred ccccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 539 DSVFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 539 ~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
+. ...+...++.++.|+|||||.+++.+
T Consensus 133 ~~------~~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 133 DC------DVFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp ET------TTSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred cC------ChhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 52 23467889999999999999999964
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.59 E-value=2.6e-08 Score=96.85 Aligned_cols=99 Identities=13% Similarity=0.138 Sum_probs=72.5
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc----cceec-cccccCCCC-CCc-cceeeec
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL----VGTYT-NWCEAMSTY-PRT-YDLIHAD 539 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl----i~~~~-~~~e~~~~y-p~t-~Dlih~~ 539 (626)
.+|||+|||+|.++..++.++. -.|+.+|.++.+++.+.++ |+ +.+++ |..+..... +.+ ||+|.++
T Consensus 55 ~~vLDlGcGtG~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 132 (201)
T 2ift_A 55 SECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 132 (201)
T ss_dssp CEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred CeEEEcCCccCHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence 4799999999999998777653 3789999999999988775 32 23333 222222223 378 9999998
Q ss_pred cccccCCCCCCHHHHHHHh--hhhccCCcEEEEEcChH
Q 006905 540 SVFSLYKDRCETEDILLEM--DRILRPEGGVIFRDDVD 575 (626)
Q Consensus 540 ~~f~~~~~~c~~~~~l~E~--dRiLRPgG~~i~~d~~~ 575 (626)
..|. .-+.+.++.++ .|+|||||.+++.....
T Consensus 133 ~~~~----~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 133 PPFH----FNLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CCSS----SCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCCC----CccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 7754 23567889898 78999999999976543
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.59 E-value=9.1e-08 Score=97.45 Aligned_cols=110 Identities=14% Similarity=0.130 Sum_probs=80.7
Q ss_pred CceeEEeccCchhhHhhhhhCC---CeEEEEeccCccCcccHHHHHHh-----cc--cceec-cccccCCCCC-Ccccee
Q 006905 469 RYRNILDMNAHLGGFAAALIDF---PVWVMNVVPAEAKINTLGVIYER-----GL--VGTYT-NWCEAMSTYP-RTYDLI 536 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~---~v~~mnv~~~~~~~~~l~~~~~r-----gl--i~~~~-~~~e~~~~yp-~t~Dli 536 (626)
.-.+|||+|||.|+++..|++. +. +|+.+|.++.+++.+.++ |+ +.+.+ |..+ .+| .+||+|
T Consensus 110 ~~~~VLD~G~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~---~~~~~~fD~V 183 (275)
T 1yb2_A 110 PGMDILEVGVGSGNMSSYILYALNGKG---TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD---FISDQMYDAV 183 (275)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHTTSS---EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT---CCCSCCEEEE
T ss_pred CcCEEEEecCCCCHHHHHHHHHcCCCC---EEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc---cCcCCCccEE
Confidence 3568999999999999999875 44 789999998999988776 53 23333 2222 345 789999
Q ss_pred eeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcChH-HHHHHHHHHHhCCCeeE
Q 006905 537 HADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDVD-ELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 537 h~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~~-~~~~~~~~~~~l~w~~~ 592 (626)
.++ --+...+|.++.|+|||||.+++.+... ...++.+.+....|...
T Consensus 184 i~~--------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~~~ 232 (275)
T 1yb2_A 184 IAD--------IPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHL 232 (275)
T ss_dssp EEC--------CSCGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEE
T ss_pred EEc--------CcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCeEE
Confidence 882 1244679999999999999999987654 55666666666555543
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.59 E-value=3.8e-08 Score=103.04 Aligned_cols=96 Identities=13% Similarity=0.039 Sum_probs=65.7
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHc---------CCCeEEEEccccc-CCCCCCCee
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALER---------GVPALIGVLAAER-LPYPSRAFD 277 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~er---------g~~~~~~v~d~~~-Lpf~d~sFD 277 (626)
..+|||||||+|.++..+++. .++++|+++.. ++.|+++ ...+.+..+|... ++..+++||
T Consensus 109 ~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~-----i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD 183 (314)
T 2b2c_A 109 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMV-----IDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFD 183 (314)
T ss_dssp CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHH-----HHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEE
T ss_pred CCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHH-----HHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCce
Confidence 468999999999999999875 57888886643 3444332 2246677777543 333567899
Q ss_pred EEEeccccccccccH----HHHHHHHHhcccCCeEEEEEe
Q 006905 278 MAHCSRCLIPWNQFG----GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 278 lV~~~~~l~h~~~~~----~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+|++... .++.... ..+++++.++|+|||.+++..
T Consensus 184 ~Ii~d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 184 VIITDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp EEEECCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred EEEEcCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 9998653 2432211 578999999999999999975
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.59 E-value=5e-07 Score=87.16 Aligned_cols=95 Identities=8% Similarity=-0.020 Sum_probs=67.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIP 287 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h 287 (626)
.+.+|||+|||+|.++..+++. .++++|+++..+..+.. .+...++.+.+...|...++ ++||+|+++..++.
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~ 124 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIE-NLGEFKGKFKVFIGDVSEFN---SRVDIVIMNPPFGS 124 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHH-HTGGGTTSEEEEESCGGGCC---CCCSEEEECCCCSS
T ss_pred CcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHH-HHHHcCCCEEEEECchHHcC---CCCCEEEEcCCCcc
Confidence 4568999999999999999886 38888887754433222 22233446778888877765 48999999988755
Q ss_pred cccc-HHHHHHHHHhcccCCeEEEE
Q 006905 288 WNQF-GGIYLIEVDRVLRPGGYWIL 311 (626)
Q Consensus 288 ~~~~-~~~~L~Ei~RvLKPGG~lvi 311 (626)
+... ...++.++.++| ||.+++
T Consensus 125 ~~~~~~~~~l~~~~~~l--~~~~~~ 147 (207)
T 1wy7_A 125 QRKHADRPFLLKAFEIS--DVVYSI 147 (207)
T ss_dssp SSTTTTHHHHHHHHHHC--SEEEEE
T ss_pred ccCCchHHHHHHHHHhc--CcEEEE
Confidence 5422 267899999999 665544
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1e-07 Score=100.43 Aligned_cols=137 Identities=23% Similarity=0.280 Sum_probs=93.8
Q ss_pred CCceeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHHHh----cc---cceec-cccccCCCCCCccceee
Q 006905 468 GRYRNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIYER----GL---VGTYT-NWCEAMSTYPRTYDLIH 537 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~-~~~e~~~~yp~t~Dlih 537 (626)
....+|||+|||.|.++.+|++. ++ .++.+|. +.+++.+.++ |+ +...+ |+ +..+|..||+|.
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~---~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~D~v~ 254 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHV---SATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDF---FEPLPRKADAII 254 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTC---EEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCT---TSCCSSCEEEEE
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCC---EEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCC---CCCCCCCccEEE
Confidence 44678999999999999999875 33 5677787 5888887764 33 23332 22 234676699999
Q ss_pred eccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh--H------------------------HHHHHHHHHHhCCCee
Q 006905 538 ADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV--D------------------------ELVKVKRIIDALKWQS 591 (626)
Q Consensus 538 ~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~--~------------------------~~~~~~~~~~~l~w~~ 591 (626)
+..++.++.+. +...+|.++.|+|||||+++|.|.. . ....++++++.-.++.
T Consensus 255 ~~~vl~~~~~~-~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 333 (360)
T 1tw3_A 255 LSFVLLNWPDH-DAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVV 333 (360)
T ss_dssp EESCGGGSCHH-HHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEE
T ss_pred EcccccCCCHH-HHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeE
Confidence 99999887642 2357999999999999999998644 0 1345666777777776
Q ss_pred EEeecCCCC--CCcceEEEEEec
Q 006905 592 QIVDHEDGP--LEREKLLFAVKL 612 (626)
Q Consensus 592 ~~~~~e~~~--~~~e~~l~~~K~ 612 (626)
..+..-.++ .....++.++|+
T Consensus 334 ~~~~~~~~~~~~~~~~~i~~~~~ 356 (360)
T 1tw3_A 334 EEVRQLPSPTIPYDLSLLVLAPA 356 (360)
T ss_dssp EEEEEEECSSSSCEEEEEEEEEC
T ss_pred EEEEeCCCCcccCccEEEEEEeC
Confidence 533222111 011568888884
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=98.58 E-value=7e-08 Score=96.58 Aligned_cols=117 Identities=17% Similarity=0.174 Sum_probs=79.0
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh------------cc--cceec-cccccCCC-CC-Cc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER------------GL--VGTYT-NWCEAMST-YP-RT 532 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r------------gl--i~~~~-~~~e~~~~-yp-~t 532 (626)
-..|||+|||.|+|+..|++..- ..+|+.+|.++.+++.+.++ |+ +.++. |..+.+.. ++ .+
T Consensus 50 ~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~ 128 (246)
T 2vdv_E 50 KVTIADIGCGFGGLMIDLSPAFP-EDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ 128 (246)
T ss_dssp CEEEEEETCTTSHHHHHHHHHST-TSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred CCEEEEEcCCCCHHHHHHHHhCC-CCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence 46799999999999999987631 12799999998999888664 55 23333 22221221 44 78
Q ss_pred cceeeeccccccC-------CCCCCHHHHHHHhhhhccCCcEEEE-EcChHHHHHHHHHHHhCCC
Q 006905 533 YDLIHADSVFSLY-------KDRCETEDILLEMDRILRPEGGVIF-RDDVDELVKVKRIIDALKW 589 (626)
Q Consensus 533 ~Dlih~~~~f~~~-------~~~c~~~~~l~E~dRiLRPgG~~i~-~d~~~~~~~~~~~~~~l~w 589 (626)
+|.|... |... ..+-..+.+|.++.|+|+|||.+++ +|..+..+.+.+.+....+
T Consensus 129 ~d~v~~~--~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~ 191 (246)
T 2vdv_E 129 LSKMFFC--FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEHPL 191 (246)
T ss_dssp EEEEEEE--SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHHSTT
T ss_pred cCEEEEE--CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHHHhCcC
Confidence 8887642 2221 1122226899999999999999998 5766666667666655544
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.58 E-value=3.4e-07 Score=97.68 Aligned_cols=99 Identities=14% Similarity=-0.045 Sum_probs=73.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEccccc-CCC-CCCCeeEEEecc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAER-LPY-PSRAFDMAHCSR 283 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~-Lpf-~d~sFDlV~~~~ 283 (626)
.+.+|||+| |+|.++..++.. .++++|+++.++..+.. .+...|+ .+.+..+|... +|. .+++||+|+++.
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~-~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~ 249 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEK-AANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP 249 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHH-HHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCEEEEEChhhhhchhhccCCccEEEECC
Confidence 356999999 999999888765 58888888765554433 3334455 57788888777 764 457899999987
Q ss_pred ccccccccHHHHHHHHHhcccCCe-EEEEEe
Q 006905 284 CLIPWNQFGGIYLIEVDRVLRPGG-YWILSG 313 (626)
Q Consensus 284 ~l~h~~~~~~~~L~Ei~RvLKPGG-~lvis~ 313 (626)
.++.. . ...++.++.++||||| .++++.
T Consensus 250 p~~~~-~-~~~~l~~~~~~LkpgG~~~~~~~ 278 (373)
T 2qm3_A 250 PETLE-A-IRAFVGRGIATLKGPRCAGYFGI 278 (373)
T ss_dssp CSSHH-H-HHHHHHHHHHTBCSTTCEEEEEE
T ss_pred CCchH-H-HHHHHHHHHHHcccCCeEEEEEE
Confidence 66333 2 4789999999999999 446654
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=98.57 E-value=5.7e-08 Score=94.79 Aligned_cols=119 Identities=14% Similarity=0.078 Sum_probs=76.9
Q ss_pred ceeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHH--------Hhcc--cceeccccccCCCCC-Ccccee
Q 006905 470 YRNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIY--------ERGL--VGTYTNWCEAMSTYP-RTYDLI 536 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~--------~rgl--i~~~~~~~e~~~~yp-~t~Dli 536 (626)
-.+|||+|||.|.++..|++. +. +|+.+|.++.|+..+. .+|+ +...+.-.+.++ ++ .+ |.+
T Consensus 28 ~~~vLDiGcG~G~~~~~la~~~p~~---~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~-~~~~~-d~v 102 (218)
T 3mq2_A 28 DDVVLDVGTGDGKHPYKVARQNPSR---LVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLP-PLSGV-GEL 102 (218)
T ss_dssp SEEEEEESCTTCHHHHHHHHHCTTE---EEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCC-SCCCE-EEE
T ss_pred CCEEEEecCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCC-CCCCC-CEE
Confidence 567999999999999999887 44 7999999999998643 2343 223332222222 33 55 777
Q ss_pred eeccccccCC--CCCCHHHHHHHhhhhccCCcEEEEEcC------------------hH-HHHHHHHHHHhCCCeeEE
Q 006905 537 HADSVFSLYK--DRCETEDILLEMDRILRPEGGVIFRDD------------------VD-ELVKVKRIIDALKWQSQI 593 (626)
Q Consensus 537 h~~~~f~~~~--~~c~~~~~l~E~dRiLRPgG~~i~~d~------------------~~-~~~~~~~~~~~l~w~~~~ 593 (626)
.....+.... +.-+...+|.|+.|+|||||.++++.. .+ ....+++++..-.|++.-
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~ 180 (218)
T 3mq2_A 103 HVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLAD 180 (218)
T ss_dssp EEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEE
T ss_pred EEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCcee
Confidence 6322111110 001226799999999999999999621 11 233477788888887653
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=8.5e-09 Score=110.92 Aligned_cols=128 Identities=13% Similarity=0.115 Sum_probs=87.8
Q ss_pred HHHHHHHhhhhcCCCCCceeEEeccCc------hhhHhhhhhCC---CeEEEEeccCccCcccHHHHHHhcccceecccc
Q 006905 453 RLSYYKTMNNQLGQSGRYRNILDMNAH------LGGFAAALIDF---PVWVMNVVPAEAKINTLGVIYERGLVGTYTNWC 523 (626)
Q Consensus 453 ~v~~y~~~~~~~~~~~~~r~vlD~g~g------~G~faa~l~~~---~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~ 523 (626)
-...|.+++..+.. .-.+|||+||| +||.+..|+++ +. .|+.+|.++.|. ....-|.++..=+
T Consensus 202 y~~~Ye~lL~~l~~--~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a---~V~GVDiSp~m~---~~~~rI~fv~GDa 273 (419)
T 3sso_A 202 FTPHYDRHFRDYRN--QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRG---QIYGLDIMDKSH---VDELRIRTIQGDQ 273 (419)
T ss_dssp CHHHHHHHHGGGTT--SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTC---EEEEEESSCCGG---GCBTTEEEEECCT
T ss_pred HHHHHHHHHHhhcC--CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCC---EEEEEECCHHHh---hcCCCcEEEEecc
Confidence 35567777766544 34789999999 78888877753 33 789999998873 1111133333212
Q ss_pred ccCCCC------CCccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh------------------HHHHH
Q 006905 524 EAMSTY------PRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV------------------DELVK 579 (626)
Q Consensus 524 e~~~~y------p~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~------------------~~~~~ 579 (626)
+.++.. ..+||+|.++.+ +.. .+....|.|+.|+|||||+++|.|-. .+++.
T Consensus 274 ~dlpf~~~l~~~d~sFDlVisdgs--H~~--~d~~~aL~el~rvLKPGGvlVi~Dl~tsy~p~f~G~~~~~~~~~tii~~ 349 (419)
T 3sso_A 274 NDAEFLDRIARRYGPFDIVIDDGS--HIN--AHVRTSFAALFPHVRPGGLYVIEDMWTAYWPGFGGQADPQECSGTSLGL 349 (419)
T ss_dssp TCHHHHHHHHHHHCCEEEEEECSC--CCH--HHHHHHHHHHGGGEEEEEEEEEECGGGGGCTBTTCCSSTTCCTTSHHHH
T ss_pred cccchhhhhhcccCCccEEEECCc--ccc--hhHHHHHHHHHHhcCCCeEEEEEecccccCcccCCCccCCcchhHHHHH
Confidence 222212 379999999753 221 24578999999999999999997532 36888
Q ss_pred HHHHHHhCCCeeE
Q 006905 580 VKRIIDALKWQSQ 592 (626)
Q Consensus 580 ~~~~~~~l~w~~~ 592 (626)
++++++.++|.-.
T Consensus 350 lk~l~D~l~~~~~ 362 (419)
T 3sso_A 350 LKSLIDAIQHQEL 362 (419)
T ss_dssp HHHHHHHHTGGGS
T ss_pred HHHHHHHhccccc
Confidence 9999999998743
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.56 E-value=6.2e-08 Score=93.80 Aligned_cols=93 Identities=15% Similarity=0.078 Sum_probs=70.4
Q ss_pred CceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceec-cccccCCCCCCccceeeeccc
Q 006905 469 RYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYT-NWCEAMSTYPRTYDLIHADSV 541 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~-~~~e~~~~yp~t~Dlih~~~~ 541 (626)
.-.+|||+|||.|.++..|++.+. +|+.+|.++.+++.+.++ |+ +.+.+ |..+.. .-..+||+|.++..
T Consensus 77 ~~~~vLdiG~G~G~~~~~la~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~D~i~~~~~ 152 (210)
T 3lbf_A 77 PQSRVLEIGTGSGYQTAILAHLVQ---HVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGW-QARAPFDAIIVTAA 152 (210)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC-GGGCCEEEEEESSB
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCC---EEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCC-ccCCCccEEEEccc
Confidence 356899999999999999998854 789999999999988876 33 23333 222211 11289999999888
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFRDDV 574 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~ 574 (626)
+.+..+ ++.|+|||||++++.-..
T Consensus 153 ~~~~~~---------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 153 PPEIPT---------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp CSSCCT---------HHHHTEEEEEEEEEEECS
T ss_pred hhhhhH---------HHHHhcccCcEEEEEEcC
Confidence 876653 688999999999997554
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=6.1e-08 Score=101.71 Aligned_cols=96 Identities=14% Similarity=0.106 Sum_probs=68.6
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHc---------CCCeEEEEccccc-CCCCCCCee
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALER---------GVPALIGVLAAER-LPYPSRAFD 277 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~er---------g~~~~~~v~d~~~-Lpf~d~sFD 277 (626)
..+|||||||+|.++..++++ .++++|+++..+ +.|+++ ...+.+...|... ++..+++||
T Consensus 117 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l-----~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD 191 (321)
T 2pt6_A 117 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVI-----EVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYD 191 (321)
T ss_dssp CCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHH-----HHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEE
T ss_pred CCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHH-----HHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCce
Confidence 468999999999999999876 478888876444 344332 2246677777543 333457899
Q ss_pred EEEeccccccccc--cH--HHHHHHHHhcccCCeEEEEEe
Q 006905 278 MAHCSRCLIPWNQ--FG--GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 278 lV~~~~~l~h~~~--~~--~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+|++...- ++.. .. ..++.++.++|||||.+++..
T Consensus 192 vIi~d~~~-p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 192 VIIVDSSD-PIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp EEEEECCC-SSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECCcC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 99986532 3321 11 689999999999999999975
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=98.56 E-value=6e-08 Score=101.79 Aligned_cols=96 Identities=15% Similarity=0.175 Sum_probs=73.5
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc---cceeccccccCCCCC-Cccceeeecccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL---VGTYTNWCEAMSTYP-RTYDLIHADSVF 542 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~~~~e~~~~yp-~t~Dlih~~~~f 542 (626)
.+|||+|||.|.++..+++.+. ..|+.+|.+ .++..+.++ |+ |.+++.-.+.+ .+| ..||+|.+..+.
T Consensus 40 ~~VLDiGcGtG~ls~~la~~g~--~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~D~Ivs~~~~ 115 (328)
T 1g6q_1 40 KIVLDVGCGTGILSMFAAKHGA--KHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDV-HLPFPKVDIIISEWMG 115 (328)
T ss_dssp CEEEEETCTTSHHHHHHHHTCC--SEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTS-CCSSSCEEEEEECCCB
T ss_pred CEEEEecCccHHHHHHHHHCCC--CEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhc-cCCCCcccEEEEeCch
Confidence 5799999999999999998764 378889998 688877664 44 34444222222 245 899999998776
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEE
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIF 570 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~ 570 (626)
......-.++.+|.+++|+|||||.++.
T Consensus 116 ~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 116 YFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 6555556788999999999999999983
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=98.56 E-value=5.6e-08 Score=97.30 Aligned_cols=105 Identities=12% Similarity=0.101 Sum_probs=73.9
Q ss_pred CceeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHHHh-------cc------------------------
Q 006905 469 RYRNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIYER-------GL------------------------ 515 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~~r-------gl------------------------ 515 (626)
.-.+|||+|||+|.++..|++. . -..+|+.+|.++.+++.+.++ |+
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~-~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRR-SLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 129 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGG-GEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhcc-CCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhh
Confidence 3468999999999999999875 1 124899999999999888743 33
Q ss_pred ----cc-------------eec-cccccCCC--C-C-CccceeeeccccccCCCC------CCHHHHHHHhhhhccCCcE
Q 006905 516 ----VG-------------TYT-NWCEAMST--Y-P-RTYDLIHADSVFSLYKDR------CETEDILLEMDRILRPEGG 567 (626)
Q Consensus 516 ----i~-------------~~~-~~~e~~~~--y-p-~t~Dlih~~~~f~~~~~~------c~~~~~l~E~dRiLRPgG~ 567 (626)
+. +.+ |+.+.+.. . + .+||+|.|+-.|...... -....++.++.|+|+|||+
T Consensus 130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 209 (250)
T 1o9g_A 130 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAV 209 (250)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCE
T ss_pred hhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcE
Confidence 22 332 32221110 0 3 489999998776644321 2345799999999999999
Q ss_pred EEEEcCh
Q 006905 568 VIFRDDV 574 (626)
Q Consensus 568 ~i~~d~~ 574 (626)
+++.+..
T Consensus 210 l~~~~~~ 216 (250)
T 1o9g_A 210 IAVTDRS 216 (250)
T ss_dssp EEEEESS
T ss_pred EEEeCcc
Confidence 9997654
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.56 E-value=2.3e-07 Score=92.36 Aligned_cols=109 Identities=18% Similarity=0.132 Sum_probs=79.7
Q ss_pred ceeEEeccCchhhHhhhhhCC---CeEEEEeccCccCcccHHHHHHh-----cc--cceec-cccccCCCCC-Cccceee
Q 006905 470 YRNILDMNAHLGGFAAALIDF---PVWVMNVVPAEAKINTLGVIYER-----GL--VGTYT-NWCEAMSTYP-RTYDLIH 537 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~---~v~~mnv~~~~~~~~~l~~~~~r-----gl--i~~~~-~~~e~~~~yp-~t~Dlih 537 (626)
-.+|||+|||.|.++.+|++. +. +|+.+|.++.+++.+.++ |. +.+.+ |..+. .+| .+||+|.
T Consensus 97 ~~~vLdiG~G~G~~~~~l~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~--~~~~~~~D~v~ 171 (258)
T 2pwy_A 97 GMRVLEAGTGSGGLTLFLARAVGEKG---LVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEA--ELEEAAYDGVA 171 (258)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGC--CCCTTCEEEEE
T ss_pred CCEEEEECCCcCHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhc--CCCCCCcCEEE
Confidence 458999999999999999876 34 788999998999988877 52 23333 32221 245 7899998
Q ss_pred eccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcChH-HHHHHHHHHHhCCCee
Q 006905 538 ADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDVD-ELVKVKRIIDALKWQS 591 (626)
Q Consensus 538 ~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~~-~~~~~~~~~~~l~w~~ 591 (626)
++ --+...+|.++.|+|||||.+++..... .+.++.+.++...|..
T Consensus 172 ~~--------~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~~ 218 (258)
T 2pwy_A 172 LD--------LMEPWKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFRL 218 (258)
T ss_dssp EE--------SSCGGGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEEE
T ss_pred EC--------CcCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCce
Confidence 82 1244579999999999999999987653 5566666666655543
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=98.55 E-value=3.9e-08 Score=99.09 Aligned_cols=91 Identities=16% Similarity=0.160 Sum_probs=68.2
Q ss_pred ceeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHHHhcc-cceeccccccCCCCC-CccceeeeccccccC
Q 006905 470 YRNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIYERGL-VGTYTNWCEAMSTYP-RTYDLIHADSVFSLY 545 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~~rgl-i~~~~~~~e~~~~yp-~t~Dlih~~~~f~~~ 545 (626)
-.+|||+|||.|.++..|++. +. +|+.+|.++.+++.+.+++- +.....-.+.++ ++ .+||+|.+..+
T Consensus 86 ~~~vLdiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~---- 157 (269)
T 1p91_A 86 ATAVLDIGCGEGYYTHAFADALPEI---TTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLP-FSDTSMDAIIRIYA---- 157 (269)
T ss_dssp CCEEEEETCTTSTTHHHHHHTCTTS---EEEEEESCHHHHHHHHHHCTTSEEEECCTTSCS-BCTTCEEEEEEESC----
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCC---eEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCC-CCCCceeEEEEeCC----
Confidence 457999999999999999886 44 78999999999999998873 222221111222 33 79999998543
Q ss_pred CCCCCHHHHHHHhhhhccCCcEEEEEcCh
Q 006905 546 KDRCETEDILLEMDRILRPEGGVIFRDDV 574 (626)
Q Consensus 546 ~~~c~~~~~l~E~dRiLRPgG~~i~~d~~ 574 (626)
...|.|+.|+|||||.+++.+..
T Consensus 158 ------~~~l~~~~~~L~pgG~l~~~~~~ 180 (269)
T 1p91_A 158 ------PCKAEELARVVKPGGWVITATPG 180 (269)
T ss_dssp ------CCCHHHHHHHEEEEEEEEEEEEC
T ss_pred ------hhhHHHHHHhcCCCcEEEEEEcC
Confidence 23589999999999999997643
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.55 E-value=3.1e-08 Score=93.31 Aligned_cols=99 Identities=16% Similarity=0.176 Sum_probs=72.1
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc----c---cceec-cccccCCCCCCccceeeeccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG----L---VGTYT-NWCEAMSTYPRTYDLIHADSV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg----l---i~~~~-~~~e~~~~yp~t~Dlih~~~~ 541 (626)
-.+|||+|||.|.++..|++.+. .+|+.+|.++.+++.+.++- + +.+++ |+.+.+...+..||+|.++..
T Consensus 32 ~~~vLDlGcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~ 109 (177)
T 2esr_A 32 GGRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 109 (177)
T ss_dssp SCEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCeEEEeCCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCC
Confidence 45799999999999999998864 37899999999999887642 2 22333 333323334578999999766
Q ss_pred cccCCCCCCHHHHHHHhh--hhccCCcEEEEEcCh
Q 006905 542 FSLYKDRCETEDILLEMD--RILRPEGGVIFRDDV 574 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~d--RiLRPgG~~i~~d~~ 574 (626)
|.. ...+.++.++. |+|+|||.+++....
T Consensus 110 ~~~----~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 140 (177)
T 2esr_A 110 YAK----ETIVATIEALAAKNLLSEQVMVVCETDK 140 (177)
T ss_dssp SHH----HHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred CCc----chHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence 632 23466777776 999999999997544
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=98.55 E-value=3.4e-07 Score=89.88 Aligned_cols=131 Identities=11% Similarity=0.083 Sum_probs=80.7
Q ss_pred ceeEEeccCchhhHhhhhhCC---CeEEEEeccCccCcccHHHHHHhcc----cceec-ccccc--CCCCCCccceeeec
Q 006905 470 YRNILDMNAHLGGFAAALIDF---PVWVMNVVPAEAKINTLGVIYERGL----VGTYT-NWCEA--MSTYPRTYDLIHAD 539 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~---~v~~mnv~~~~~~~~~l~~~~~rgl----i~~~~-~~~e~--~~~yp~t~Dlih~~ 539 (626)
-.+|||+|||.|.++..|++. .. +|+.+|.++.+++.+.++.- +..++ |..+. +...+.+||+|.++
T Consensus 74 ~~~vLDlG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 74 GKSVLYLGIASGTTASHVSDIVGWEG---KIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp TCEEEEETTTSTTHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCEEEEEeccCCHHHHHHHHHhCCCe---EEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 458999999999999999865 13 57888999877776655431 22232 22221 12235789999985
Q ss_pred cccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh---------H--HHHHHHHHHHhCCCeeEE-eecCCCCC-CcceE
Q 006905 540 SVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV---------D--ELVKVKRIIDALKWQSQI-VDHEDGPL-EREKL 606 (626)
Q Consensus 540 ~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~---------~--~~~~~~~~~~~l~w~~~~-~~~e~~~~-~~e~~ 606 (626)
.. ..-....+|.++.|+|||||++++.-.. . ....++.+ ..- ++... .+. .+. ...-+
T Consensus 151 ~~-----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~-f~~~~~~~~--~~~~~~~~~ 221 (227)
T 1g8a_A 151 VA-----QPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVEREL-SEY-FEVIERLNL--EPYEKDHAL 221 (227)
T ss_dssp CC-----STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHH-HTT-SEEEEEEEC--TTTSSSEEE
T ss_pred CC-----CHhHHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCChhhhhHHHHHHH-Hhh-ceeeeEecc--CcccCCCEE
Confidence 43 1112234599999999999999996211 1 12455555 333 76542 232 222 23457
Q ss_pred EEEEec
Q 006905 607 LFAVKL 612 (626)
Q Consensus 607 l~~~K~ 612 (626)
++++|+
T Consensus 222 ~~~~~~ 227 (227)
T 1g8a_A 222 FVVRKT 227 (227)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 777763
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.3e-07 Score=90.76 Aligned_cols=136 Identities=13% Similarity=0.148 Sum_probs=77.6
Q ss_pred ceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhcccceec-cccccCC--------------------
Q 006905 470 YRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERGLVGTYT-NWCEAMS-------------------- 527 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rgli~~~~-~~~e~~~-------------------- 527 (626)
-.+|||+|||+|+++.+|+++ +-....|+.+|.++ +.. ..++ ...+ |+.+ ..
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~-~~~---~~~v-~~~~~d~~~-~~~~~~~~~~~i~~~~~~~~~~ 96 (201)
T 2plw_A 23 NKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKI-MDP---IPNV-YFIQGEIGK-DNMNNIKNINYIDNMNNNSVDY 96 (201)
T ss_dssp TEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSC-CCC---CTTC-EEEECCTTT-TSSCCC-----------CHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCc-cCC---CCCc-eEEEccccc-hhhhhhccccccccccchhhHH
Confidence 367999999999999999865 20012577778774 211 1121 2222 2211 11
Q ss_pred ----CCC-CccceeeeccccccCCCC-CC-------HHHHHHHhhhhccCCcEEEEEcCh-HHHHHHHHHHHhCCCeeEE
Q 006905 528 ----TYP-RTYDLIHADSVFSLYKDR-CE-------TEDILLEMDRILRPEGGVIFRDDV-DELVKVKRIIDALKWQSQI 593 (626)
Q Consensus 528 ----~yp-~t~Dlih~~~~f~~~~~~-c~-------~~~~l~E~dRiLRPgG~~i~~d~~-~~~~~~~~~~~~l~w~~~~ 593 (626)
.++ ++||+|.|+..+...... -+ ...+|.++.|+|||||.+++..-. +....+...+...-.++.+
T Consensus 97 ~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~~l~~~f~~v~~ 176 (201)
T 2plw_A 97 KLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKGMFQLVHT 176 (201)
T ss_dssp HHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHHHHHHTTEEEEEE
T ss_pred HHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHHHHHHHHHheEEE
Confidence 035 799999998776543210 01 124789999999999999995321 2234455555443222333
Q ss_pred eecC-CCCCCcceEEEEEe
Q 006905 594 VDHE-DGPLEREKLLFAVK 611 (626)
Q Consensus 594 ~~~e-~~~~~~e~~l~~~K 611 (626)
+... ..+...|..+||++
T Consensus 177 ~~~~~~r~~s~e~y~v~~~ 195 (201)
T 2plw_A 177 TKPKASRNESREIYLVCKN 195 (201)
T ss_dssp CCCC-----CCEEEEEEEE
T ss_pred ECCcccCCcCceEEEEEec
Confidence 2222 22335688999976
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1e-07 Score=100.80 Aligned_cols=95 Identities=14% Similarity=0.158 Sum_probs=72.5
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc---cceeccccccCCC--CCCccceeeecc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL---VGTYTNWCEAMST--YPRTYDLIHADS 540 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~~~~e~~~~--yp~t~Dlih~~~ 540 (626)
-.+|||+|||.|.++..+++.+. ..|+.+|.+ .++..+.++ |+ +.+++ ..+.. .|..||+|.+..
T Consensus 51 ~~~VLDiGcGtG~ls~~la~~g~--~~V~~vD~s-~~~~~a~~~~~~~~l~~~v~~~~---~d~~~~~~~~~~D~Ivs~~ 124 (348)
T 2y1w_A 51 DKIVLDVGCGSGILSFFAAQAGA--RKIYAVEAS-TMAQHAEVLVKSNNLTDRIVVIP---GKVEEVSLPEQVDIIISEP 124 (348)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC--SEEEEEECS-THHHHHHHHHHHTTCTTTEEEEE---SCTTTCCCSSCEEEEEECC
T ss_pred cCEEEEcCCCccHHHHHHHhCCC--CEEEEECCH-HHHHHHHHHHHHcCCCCcEEEEE---cchhhCCCCCceeEEEEeC
Confidence 45899999999999999988764 268888888 577766654 44 34444 23333 458999999998
Q ss_pred ccccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 541 VFSLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 541 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
++.+.... .+...+.++.|+|||||.+++.
T Consensus 125 ~~~~~~~~-~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 125 MGYMLFNE-RMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp CBTTBTTT-SHHHHHHHGGGGEEEEEEEESC
T ss_pred chhcCChH-HHHHHHHHHHhhcCCCeEEEEe
Confidence 88776543 5678888999999999999864
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=8.3e-08 Score=98.57 Aligned_cols=99 Identities=12% Similarity=0.098 Sum_probs=68.2
Q ss_pred CCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHH-----------cCCCeEEEEccccc-CCCCCCCe
Q 006905 212 IRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALE-----------RGVPALIGVLAAER-LPYPSRAF 276 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~e-----------rg~~~~~~v~d~~~-Lpf~d~sF 276 (626)
..+|||||||+|.++..++++ .++++|+++..+..+...+ .. ....+.+...|... ++. +++|
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~f 153 (281)
T 1mjf_A 76 PKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGF 153 (281)
T ss_dssp CCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCE
T ss_pred CCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-cCCe
Confidence 568999999999999999876 5888888775444333222 10 12245666666433 233 5789
Q ss_pred eEEEeccccccccc--c--HHHHHHHHHhcccCCeEEEEEe
Q 006905 277 DMAHCSRCLIPWNQ--F--GGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 277 DlV~~~~~l~h~~~--~--~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
|+|++.... ++.. . ...++.++.++|+|||.+++..
T Consensus 154 D~Ii~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 154 DVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp EEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 999986543 3321 1 2678999999999999999974
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.3e-08 Score=102.24 Aligned_cols=134 Identities=13% Similarity=0.107 Sum_probs=76.0
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc--------cceeccccccCCCCC-Cccceeeecc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL--------VGTYTNWCEAMSTYP-RTYDLIHADS 540 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl--------i~~~~~~~e~~~~yp-~t~Dlih~~~ 540 (626)
-.+|||+|||+|+|+.+|++++ .|+++|.++ |+..+.++.. +.+++. +..+..+| .+||+|.|+.
T Consensus 75 g~~VLDlGcGtG~~s~~la~~~----~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~-~~D~~~l~~~~fD~V~sd~ 148 (265)
T 2oxt_A 75 TGRVVDLGCGRGGWSYYAASRP----HVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKS-RVDIHTLPVERTDVIMCDV 148 (265)
T ss_dssp CEEEEEESCTTSHHHHHHHTST----TEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEEC-SCCTTTSCCCCCSEEEECC
T ss_pred CCEEEEeCcCCCHHHHHHHHcC----cEEEEECch-hhhhhhhhhhhhhccCCCeEEEec-ccCHhHCCCCCCcEEEEeC
Confidence 4679999999999999998872 466777764 4322212211 112200 23444455 8999999987
Q ss_pred ccccCCCC-CCHH---HHHHHhhhhccCCc--EEEEEc----ChHHHHHHHHHHHhCCCeeEEeecCCCCCCcceEEEEE
Q 006905 541 VFSLYKDR-CETE---DILLEMDRILRPEG--GVIFRD----DVDELVKVKRIIDALKWQSQIVDHEDGPLEREKLLFAV 610 (626)
Q Consensus 541 ~f~~~~~~-c~~~---~~l~E~dRiLRPgG--~~i~~d----~~~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~ 610 (626)
. .+..+. -+.. .+|.++.|+||||| .|++.. ..+++..++.+.+.+. ...+...-.-....|..+||.
T Consensus 149 ~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~~~~~~~~~l~~l~~~f~-~v~~~k~~sR~~s~E~y~v~~ 226 (265)
T 2oxt_A 149 G-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLCPYSVEVMERLSVMQRKWG-GGLVRNPYSRNSTHEMYFTSR 226 (265)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHHHHHHHHHHC-CEEECCTTSCTTCCCEEEESS
T ss_pred c-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCCCChhHHHHHHHHHHHcC-CEEEEEecccCCCccEEEEec
Confidence 6 222211 0001 27899999999999 999863 2322344444333322 233332222233467777764
Q ss_pred e
Q 006905 611 K 611 (626)
Q Consensus 611 K 611 (626)
+
T Consensus 227 ~ 227 (265)
T 2oxt_A 227 A 227 (265)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.53 E-value=1.8e-08 Score=93.63 Aligned_cols=97 Identities=10% Similarity=0.071 Sum_probs=70.4
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc----c-cceec-cccccCCCCC---Cccceeeecc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG----L-VGTYT-NWCEAMSTYP---RTYDLIHADS 540 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg----l-i~~~~-~~~e~~~~yp---~t~Dlih~~~ 540 (626)
-.+|||+|||.|.++..|++.+. +|+.+|.++.+++.+.++- + +.+++ |+.+.....+ .+||+|.++.
T Consensus 42 ~~~vLD~GcG~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 42 RGRFLDPFAGSGAVGLEAASEGW---EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp CCEEEEETCSSCHHHHHHHHTTC---EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEeCCCcCHHHHHHHHCCC---eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 35799999999999999998875 4999999999998887642 2 23333 2222122222 3899999988
Q ss_pred ccccCCCCCCHHHHHHHhh--hhccCCcEEEEEcCh
Q 006905 541 VFSLYKDRCETEDILLEMD--RILRPEGGVIFRDDV 574 (626)
Q Consensus 541 ~f~~~~~~c~~~~~l~E~d--RiLRPgG~~i~~d~~ 574 (626)
.|. . ..+.++.++. |+|||||.+++....
T Consensus 119 ~~~--~---~~~~~~~~~~~~~~L~~gG~~~~~~~~ 149 (171)
T 1ws6_A 119 PYA--M---DLAALFGELLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp CTT--S---CTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred CCc--h---hHHHHHHHHHhhcccCCCcEEEEEeCC
Confidence 876 2 3356667776 999999999997543
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=98.53 E-value=1.8e-07 Score=93.46 Aligned_cols=105 Identities=16% Similarity=0.224 Sum_probs=79.9
Q ss_pred ceeEEeccCchhhHhhhhhCC---CeEEEEeccCccCcccHHHHHHh----cc---cceec-cccccCCCCC-Cccceee
Q 006905 470 YRNILDMNAHLGGFAAALIDF---PVWVMNVVPAEAKINTLGVIYER----GL---VGTYT-NWCEAMSTYP-RTYDLIH 537 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~---~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~-~~~e~~~~yp-~t~Dlih 537 (626)
-.+|||+|||.|.++.+|++. +. .|+.+|.++.+++.+.++ |+ +.+.+ |..+ .+| .+||+|.
T Consensus 94 ~~~vldiG~G~G~~~~~l~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~~D~v~ 167 (255)
T 3mb5_A 94 GDFIVEAGVGSGALTLFLANIVGPEG---RVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYE---GIEEENVDHVI 167 (255)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGG---CCCCCSEEEEE
T ss_pred CCEEEEecCCchHHHHHHHHHhCCCe---EEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhh---ccCCCCcCEEE
Confidence 567999999999999999876 44 688899998999988876 54 23333 3333 255 7899998
Q ss_pred eccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC-hHHHHHHHHHHHhCC
Q 006905 538 ADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDD-VDELVKVKRIIDALK 588 (626)
Q Consensus 538 ~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~-~~~~~~~~~~~~~l~ 588 (626)
+ +--+...+|.++.|+|||||.+++... .+...++.+.++...
T Consensus 168 ~--------~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g 211 (255)
T 3mb5_A 168 L--------DLPQPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFK 211 (255)
T ss_dssp E--------CSSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTG
T ss_pred E--------CCCCHHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 8 223446789999999999999998764 556677777777665
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=2.1e-07 Score=93.73 Aligned_cols=101 Identities=14% Similarity=0.059 Sum_probs=75.0
Q ss_pred CCCCEEEEeCCCCchHHHHHhh-CCcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEeccccccc
Q 006905 210 GSIRTAIDTGCGVASWGAYLLS-RNIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPW 288 (626)
Q Consensus 210 ~~~~~VLDIGCGtG~~a~~La~-~~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~ 288 (626)
+...+|||||||.|.++..+.. ..++++|+++.++.-... .+...+.+..+.+.|....+.+. +||+|++.-++++.
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~~~~~y~a~DId~~~i~~ar~-~~~~~g~~~~~~v~D~~~~~~~~-~~DvvLllk~lh~L 181 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYERGIASVWGCDIHQGLGDVITP-FAREKDWDFTFALQDVLCAPPAE-AGDLALIFKLLPLL 181 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHTTCSEEEEEESBHHHHHHHHH-HHHHTTCEEEEEECCTTTSCCCC-BCSEEEEESCHHHH
T ss_pred CCCCeEEEecCCccHHHHHhccCCeEEEEeCCHHHHHHHHH-HHHhcCCCceEEEeecccCCCCC-CcchHHHHHHHHHh
Confidence 4467999999999999988763 489999998865543332 34455777888888877777554 89999999888666
Q ss_pred cccHHHHHHHHHhcccCCeEEEEE
Q 006905 289 NQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 289 ~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
.........++.+.|+++|.+|-.
T Consensus 182 E~q~~~~~~~ll~aL~~~~vvVsf 205 (253)
T 3frh_A 182 EREQAGSAMALLQSLNTPRMAVSF 205 (253)
T ss_dssp HHHSTTHHHHHHHHCBCSEEEEEE
T ss_pred hhhchhhHHHHHHHhcCCCEEEEc
Confidence 544444455899999999776553
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.7e-07 Score=92.72 Aligned_cols=134 Identities=12% Similarity=0.058 Sum_probs=82.3
Q ss_pred ceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhcc----cceec-cccccC--CCCCCccceeeeccc
Q 006905 470 YRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERGL----VGTYT-NWCEAM--STYPRTYDLIHADSV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rgl----i~~~~-~~~e~~--~~yp~t~Dlih~~~~ 541 (626)
-.+|||+|||+|.++..|++. + .-.|+.+|.++.++..+.++.- +...+ |..+.. ..++.+||+|...
T Consensus 75 ~~~VLDlGcG~G~~~~~la~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~-- 150 (230)
T 1fbn_A 75 DSKILYLGASAGTTPSHVADIAD--KGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYED-- 150 (230)
T ss_dssp TCEEEEESCCSSHHHHHHHHHTT--TSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEEEC--
T ss_pred CCEEEEEcccCCHHHHHHHHHcC--CcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEEEe--
Confidence 457999999999999999876 3 1268999999999988776532 12222 211110 1233789998731
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEE----cCh-----H--HHHHHHHHHHhCCCeeEEeecCCCCC-CcceEEEE
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFR----DDV-----D--ELVKVKRIIDALKWQSQIVDHEDGPL-EREKLLFA 609 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~----d~~-----~--~~~~~~~~~~~l~w~~~~~~~e~~~~-~~e~~l~~ 609 (626)
....-..+.+|.++.|+|||||.+++. ... . ....++ ++....++..-.. +-.+. ..-.++++
T Consensus 151 ---~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~-~~~~~~~~~~~v~~ 225 (230)
T 1fbn_A 151 ---VAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEV-DIEPFEKDHVMFVG 225 (230)
T ss_dssp ---CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEE-ECTTTSTTEEEEEE
T ss_pred ---cCChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEE-ccCCCccceEEEEE
Confidence 112112367899999999999999994 110 1 124555 5555556544222 11222 23467788
Q ss_pred Eec
Q 006905 610 VKL 612 (626)
Q Consensus 610 ~K~ 612 (626)
+|+
T Consensus 226 ~k~ 228 (230)
T 1fbn_A 226 IWE 228 (230)
T ss_dssp EEC
T ss_pred EeC
Confidence 773
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.52 E-value=1.8e-07 Score=96.28 Aligned_cols=110 Identities=18% Similarity=0.155 Sum_probs=72.2
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCC
Q 006905 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLP 270 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lp 270 (626)
...++.+.+.+.... +.+|||||||+|.++..|+++ .++++|+++.++..+..+ ....+. .+.+..+|+..++
T Consensus 14 ~~i~~~i~~~~~~~~--~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~-~~~~~~~~~v~~~~~D~~~~~ 90 (285)
T 1zq9_A 14 PLIINSIIDKAALRP--TDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKR-VQGTPVASKLQVLVGDVLKTD 90 (285)
T ss_dssp HHHHHHHHHHTCCCT--TCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHH-HTTSTTGGGEEEEESCTTTSC
T ss_pred HHHHHHHHHhcCCCC--CCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHH-HHhcCCCCceEEEEcceeccc
Confidence 345566666665443 458999999999999999886 688888877544332222 212222 4677788887777
Q ss_pred CCCCCeeEEEeccccccccccH-HHHH--------------HHH--HhcccCCeEEE
Q 006905 271 YPSRAFDMAHCSRCLIPWNQFG-GIYL--------------IEV--DRVLRPGGYWI 310 (626)
Q Consensus 271 f~d~sFDlV~~~~~l~h~~~~~-~~~L--------------~Ei--~RvLKPGG~lv 310 (626)
++ +||+|+++..+ ++..+. ..++ +|+ .++|+|||.++
T Consensus 91 ~~--~fD~vv~nlpy-~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 91 LP--FFDTCVANLPY-QISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp CC--CCSEEEEECCG-GGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred ch--hhcEEEEecCc-ccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 65 79999998765 444322 1222 333 36899998863
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.52 E-value=4.2e-07 Score=99.50 Aligned_cols=103 Identities=15% Similarity=0.111 Sum_probs=72.0
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCC--CCCCCeeEEEec-
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLP--YPSRAFDMAHCS- 282 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lp--f~d~sFDlV~~~- 282 (626)
+.+|||+|||+|..+..|++. .++++|+++..+.... +.+...|+ .+.+...|...++ +++++||+|++.
T Consensus 260 g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~-~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~D~ 338 (450)
T 2yxl_A 260 GETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLK-DFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLLDA 338 (450)
T ss_dssp TCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHH-HHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEEEC
T ss_pred cCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHH-HHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEEcC
Confidence 458999999999999988873 5888888775444332 33334465 4667777777766 555789999962
Q ss_pred -----cccccccc--------c-------HHHHHHHHHhcccCCeEEEEEeCC
Q 006905 283 -----RCLIPWNQ--------F-------GGIYLIEVDRVLRPGGYWILSGPP 315 (626)
Q Consensus 283 -----~~l~h~~~--------~-------~~~~L~Ei~RvLKPGG~lvis~pp 315 (626)
..+.+.++ + +..+|.++.++|||||.+++++..
T Consensus 339 Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs 391 (450)
T 2yxl_A 339 PCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCS 391 (450)
T ss_dssp CCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred CCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 12211111 0 146899999999999999998653
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.52 E-value=2e-07 Score=93.06 Aligned_cols=97 Identities=13% Similarity=0.076 Sum_probs=69.1
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEccccc-CC-C-----CCCCee
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAER-LP-Y-----PSRAFD 277 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~-Lp-f-----~d~sFD 277 (626)
..+|||||||+|..+..|++. .++++|+++..+..+. +...+.+.. +.+..+|+.. ++ + ++++||
T Consensus 71 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~-~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD 149 (237)
T 3c3y_A 71 AKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGL-PFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYD 149 (237)
T ss_dssp CCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHH-HHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEE
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcC
Confidence 458999999999999888764 6888888775444333 233344553 6677777443 22 2 257899
Q ss_pred EEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 278 MAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 278 lV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+|++.. +......++.++.++|||||++++..
T Consensus 150 ~I~~d~----~~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 150 FGFVDA----DKPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp EEEECS----CGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEECC----chHHHHHHHHHHHHhcCCCeEEEEec
Confidence 999864 23345789999999999999999874
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.51 E-value=3.4e-07 Score=90.70 Aligned_cols=132 Identities=11% Similarity=0.099 Sum_probs=88.1
Q ss_pred eeEEeccCchhhHhhhhhCC---CeEEEEeccCccCcccHHHHHHh----cc----cceec-cccccCCCC-CCccceee
Q 006905 471 RNILDMNAHLGGFAAALIDF---PVWVMNVVPAEAKINTLGVIYER----GL----VGTYT-NWCEAMSTY-PRTYDLIH 537 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~---~v~~mnv~~~~~~~~~l~~~~~r----gl----i~~~~-~~~e~~~~y-p~t~Dlih 537 (626)
.+|||+|||.|..+.+|++. +. .|+.+|.++.+++++.++ |+ |.+.+ |..+.+..+ +.+||+|.
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~ 134 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNT---TLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVF 134 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTS---EEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEE
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEE
Confidence 38999999999999999763 33 688999998998887654 33 23333 222333445 48999998
Q ss_pred eccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh------------HHHHHHHHHHHhCCCeeEEeecCCCCCCcce
Q 006905 538 ADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV------------DELVKVKRIIDALKWQSQIVDHEDGPLEREK 605 (626)
Q Consensus 538 ~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~------------~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~ 605 (626)
++.. .-+...++.++.|+|||||.+++.+.. .....++++.+.++++-.+.. .-=| ..+.
T Consensus 135 ~d~~------~~~~~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~lp-~gdG 206 (221)
T 3dr5_A 135 GQVS------PMDLKALVDAAWPLLRRGGALVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHV-ARLP-LGAG 206 (221)
T ss_dssp ECCC------TTTHHHHHHHHHHHEEEEEEEEETTTTGGGTCSCSSCCCHHHHHHHHHHHHHTTCTTEEE-EEES-STTC
T ss_pred EcCc------HHHHHHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCCCCChHHHHHHHHHHHHhhCCCeeE-EEee-ccch
Confidence 8542 235577999999999999999995321 123456666666666532111 0012 3467
Q ss_pred EEEEEecc
Q 006905 606 LLFAVKLY 613 (626)
Q Consensus 606 ~l~~~K~~ 613 (626)
+++++|..
T Consensus 207 l~~~~~~~ 214 (221)
T 3dr5_A 207 LTVVTKAL 214 (221)
T ss_dssp EEEEEECC
T ss_pred HHHHHHHH
Confidence 99999875
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.50 E-value=8.3e-08 Score=101.15 Aligned_cols=139 Identities=13% Similarity=0.158 Sum_probs=89.3
Q ss_pred hhhcCCCCCceeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHH--HHHhcc---cceeccccccCCCCCCcc
Q 006905 461 NNQLGQSGRYRNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGV--IYERGL---VGTYTNWCEAMSTYPRTY 533 (626)
Q Consensus 461 ~~~~~~~~~~r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~--~~~rgl---i~~~~~~~e~~~~yp~t~ 533 (626)
+..+.. ....+|||+|||.|.++..|++. ++ .++.+|.+ .++.. +.+.|+ +.... ...+...| +|
T Consensus 177 ~~~~~~-~~~~~vLDvG~G~G~~~~~l~~~~p~~---~~~~~D~~-~~~~~~~~~~~~~~~~v~~~~--~d~~~~~p-~~ 248 (348)
T 3lst_A 177 ARAGDF-PATGTVADVGGGRGGFLLTVLREHPGL---QGVLLDRA-EVVARHRLDAPDVAGRWKVVE--GDFLREVP-HA 248 (348)
T ss_dssp HHHSCC-CSSEEEEEETCTTSHHHHHHHHHCTTE---EEEEEECH-HHHTTCCCCCGGGTTSEEEEE--CCTTTCCC-CC
T ss_pred HHhCCc-cCCceEEEECCccCHHHHHHHHHCCCC---EEEEecCH-HHhhcccccccCCCCCeEEEe--cCCCCCCC-CC
Confidence 333444 56789999999999999999874 33 55667765 33330 001133 22222 12225677 99
Q ss_pred ceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh-------------------------HHHHHHHHHHHhCC
Q 006905 534 DLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV-------------------------DELVKVKRIIDALK 588 (626)
Q Consensus 534 Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~-------------------------~~~~~~~~~~~~l~ 588 (626)
|+|.+..++.++.+. +...+|.++.|+|||||+++|.|.. -....++++++.-.
T Consensus 249 D~v~~~~vlh~~~d~-~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aG 327 (348)
T 3lst_A 249 DVHVLKRILHNWGDE-DSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAG 327 (348)
T ss_dssp SEEEEESCGGGSCHH-HHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTT
T ss_pred cEEEEehhccCCCHH-HHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCC
Confidence 999999999887742 3358999999999999999997631 01445667777777
Q ss_pred CeeEEeecCCCCCCcceEEEEEe
Q 006905 589 WQSQIVDHEDGPLEREKLLFAVK 611 (626)
Q Consensus 589 w~~~~~~~e~~~~~~e~~l~~~K 611 (626)
++..-+... + ....|+.++|
T Consensus 328 f~~~~~~~~-~--~~~~vie~~p 347 (348)
T 3lst_A 328 LRLDRVVGT-S--SVMSIAVGVP 347 (348)
T ss_dssp EEEEEEEEC-S--SSCEEEEEEE
T ss_pred CceEEEEEC-C--CCcEEEEEEe
Confidence 776544332 1 2345665554
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.50 E-value=1.2e-07 Score=91.97 Aligned_cols=131 Identities=12% Similarity=0.115 Sum_probs=77.8
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceeccccccCCCCC--------------Cccce
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYP--------------RTYDL 535 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~yp--------------~t~Dl 535 (626)
-.+|||+|||+|+++.+|++++. .|+++|.++.. . ..++ .++. .++...+ .+||+
T Consensus 26 g~~VLDlG~G~G~~s~~la~~~~---~V~gvD~~~~~-~---~~~v-~~~~---~D~~~~~~~~~~~~~~~~~~~~~~D~ 94 (191)
T 3dou_A 26 GDAVIEIGSSPGGWTQVLNSLAR---KIISIDLQEME-E---IAGV-RFIR---CDIFKETIFDDIDRALREEGIEKVDD 94 (191)
T ss_dssp TCEEEEESCTTCHHHHHHTTTCS---EEEEEESSCCC-C---CTTC-EEEE---CCTTSSSHHHHHHHHHHHHTCSSEEE
T ss_pred CCEEEEEeecCCHHHHHHHHcCC---cEEEEeccccc-c---CCCe-EEEE---ccccCHHHHHHHHHHhhcccCCcceE
Confidence 46899999999999999999844 67888887432 1 0122 2222 2222221 48999
Q ss_pred eeeccccccCCCC--------CCHHHHHHHhhhhccCCcEEEEEcC-hHHHHHHHHHHHhCCCee-EEeecC-CCCCCcc
Q 006905 536 IHADSVFSLYKDR--------CETEDILLEMDRILRPEGGVIFRDD-VDELVKVKRIIDALKWQS-QIVDHE-DGPLERE 604 (626)
Q Consensus 536 ih~~~~f~~~~~~--------c~~~~~l~E~dRiLRPgG~~i~~d~-~~~~~~~~~~~~~l~w~~-~~~~~e-~~~~~~e 604 (626)
|.++......... ...+.+|.++.|+|||||.|++..- .+....+...++.. +.. .++... .-+...|
T Consensus 95 Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~~-F~~v~~~kP~asR~~s~E 173 (191)
T 3dou_A 95 VVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKN-FSSYKISKPPASRGSSSE 173 (191)
T ss_dssp EEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGGG-EEEEEEECC------CCE
T ss_pred EecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHHh-cCEEEEECCCCccCCCce
Confidence 9997654322211 1134688999999999999998532 12234455555543 332 332222 2234578
Q ss_pred eEEEEEec
Q 006905 605 KLLFAVKL 612 (626)
Q Consensus 605 ~~l~~~K~ 612 (626)
..+||++.
T Consensus 174 ~y~v~~~~ 181 (191)
T 3dou_A 174 IYIMFFGF 181 (191)
T ss_dssp EEEEEEEE
T ss_pred EEEEEeee
Confidence 99999763
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=3.3e-07 Score=98.41 Aligned_cols=104 Identities=11% Similarity=0.012 Sum_probs=74.3
Q ss_pred CCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC---CeEEEEccccc-CCC---CCCCeeEEEe
Q 006905 212 IRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV---PALIGVLAAER-LPY---PSRAFDMAHC 281 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~---~~~~~v~d~~~-Lpf---~d~sFDlV~~ 281 (626)
+.+|||+|||+|.++..++.. .|+++|+++..+..+.. .+..+++ .+.+..+|+.. ++. ...+||+|++
T Consensus 213 ~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~-N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~ 291 (385)
T 2b78_A 213 GKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLA-HFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII 291 (385)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHH-HHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEE
Confidence 458999999999999999884 58999999977765544 3445555 46788878544 331 2458999998
Q ss_pred ccccc-----cc---cccHHHHHHHHHhcccCCeEEEEEeCCC
Q 006905 282 SRCLI-----PW---NQFGGIYLIEVDRVLRPGGYWILSGPPI 316 (626)
Q Consensus 282 ~~~l~-----h~---~~~~~~~L~Ei~RvLKPGG~lvis~pp~ 316 (626)
..... .. ......++.++.++|+|||.++++..+.
T Consensus 292 DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~ 334 (385)
T 2b78_A 292 DPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 334 (385)
T ss_dssp CCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 65432 11 1112457788899999999999987543
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.49 E-value=8.3e-08 Score=101.19 Aligned_cols=130 Identities=11% Similarity=0.138 Sum_probs=86.4
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----ccc-ceeccccccCCCC-CCccceeeecccccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GLV-GTYTNWCEAMSTY-PRTYDLIHADSVFSL 544 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gli-~~~~~~~e~~~~y-p~t~Dlih~~~~f~~ 544 (626)
.+|||+|||.|.++..|++.+- ..+|+.+|.++.+++.+.++ |+- .+++ ..+..+ +.+||+|.++..|.+
T Consensus 198 ~~VLDlGcG~G~~~~~la~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~---~d~~~~~~~~fD~Iv~~~~~~~ 273 (343)
T 2pjd_A 198 GKVLDVGCGAGVLSVAFARHSP-KIRLTLCDVSAPAVEASRATLAANGVEGEVFA---SNVFSEVKGRFDMIISNPPFHD 273 (343)
T ss_dssp SBCCBTTCTTSHHHHHHHHHCT-TCBCEEEESBHHHHHHHHHHHHHTTCCCEEEE---CSTTTTCCSCEEEEEECCCCCS
T ss_pred CeEEEecCccCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCCEEEE---ccccccccCCeeEEEECCCccc
Confidence 4799999999999999987631 01688999998899888775 331 1222 223333 589999999998875
Q ss_pred CC--CCCCHHHHHHHhhhhccCCcEEEEEcCh--HHHHHHHHHHHhCCCeeEEeecCCCCCCcceEEEEEec
Q 006905 545 YK--DRCETEDILLEMDRILRPEGGVIFRDDV--DELVKVKRIIDALKWQSQIVDHEDGPLEREKLLFAVKL 612 (626)
Q Consensus 545 ~~--~~c~~~~~l~E~dRiLRPgG~~i~~d~~--~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K~ 612 (626)
.. +..+.+.+|.++.|+|||||.+++.... .....++++... + .....+ .+-+|+.++|.
T Consensus 274 g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~f~~--~--~~~~~~----~gf~v~~~~k~ 337 (343)
T 2pjd_A 274 GMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDVLDETFGF--H--EVIAQT----GRFKVYRAIMT 337 (343)
T ss_dssp SSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETTSSHHHHHHHHHSC--C--EEEEEC----SSEEEEEEEC-
T ss_pred CccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCCCcHHHHHHhcCc--e--EEEeeC----CCEEEEEEEeC
Confidence 32 1124567999999999999999997543 233444554442 2 222222 35677777663
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.49 E-value=9.3e-08 Score=90.28 Aligned_cols=99 Identities=20% Similarity=0.235 Sum_probs=72.2
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc---cceec-cccccCCCC---CCccceeee
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL---VGTYT-NWCEAMSTY---PRTYDLIHA 538 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~-~~~e~~~~y---p~t~Dlih~ 538 (626)
-.+|||+|||.|.++.++++.+. .+|+.+|.++.+++.+.++ |+ +.+++ |+.+..... +.+||+|.+
T Consensus 45 ~~~vLD~GcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~ 122 (187)
T 2fhp_A 45 GGMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL 122 (187)
T ss_dssp SCEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCEEEeCCccCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEE
Confidence 45899999999999998887763 3789999998999877664 32 33443 333322212 478999999
Q ss_pred ccccccCCCCCCHHHHHHHh--hhhccCCcEEEEEcCh
Q 006905 539 DSVFSLYKDRCETEDILLEM--DRILRPEGGVIFRDDV 574 (626)
Q Consensus 539 ~~~f~~~~~~c~~~~~l~E~--dRiLRPgG~~i~~d~~ 574 (626)
+..|.. -..+.++.++ .|+|+|||.+++....
T Consensus 123 ~~~~~~----~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 156 (187)
T 2fhp_A 123 DPPYAK----QEIVSQLEKMLERQLLTNEAVIVCETDK 156 (187)
T ss_dssp CCCGGG----CCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred CCCCCc----hhHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 877652 2457777777 9999999999997543
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=2.1e-07 Score=91.23 Aligned_cols=128 Identities=16% Similarity=0.111 Sum_probs=86.4
Q ss_pred ceeEEeccCchhhHhhhhhCC---CeEEEEeccCccCcccHHHHHHh----cc---cceec-cccccCCCCC-----Ccc
Q 006905 470 YRNILDMNAHLGGFAAALIDF---PVWVMNVVPAEAKINTLGVIYER----GL---VGTYT-NWCEAMSTYP-----RTY 533 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~---~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~-~~~e~~~~yp-----~t~ 533 (626)
-.+|||+|||.|.++.+|++. +. +|+.+|.++.+++.+.++ |+ +.+++ |..+.+..++ .+|
T Consensus 70 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 70 AKKALDLGTFTGYSALALALALPADG---RVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 146 (229)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 458999999999999999875 33 788899988899888765 44 33333 2222222222 689
Q ss_pred ceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh------------HHHHHHHHH----HHhCCCeeEEeecC
Q 006905 534 DLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV------------DELVKVKRI----IDALKWQSQIVDHE 597 (626)
Q Consensus 534 Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~------------~~~~~~~~~----~~~l~w~~~~~~~e 597 (626)
|+|.++.. ......++.++.|+|||||.+++.+.. .....++++ ...=++++.+...
T Consensus 147 D~v~~d~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~- 219 (229)
T 2avd_A 147 DVAVVDAD------KENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPL- 219 (229)
T ss_dssp EEEEECSC------STTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEECS-
T ss_pred cEEEECCC------HHHHHHHHHHHHHHcCCCeEEEEECCCcCCcccCcccCChHHHHHHHHHHHHhhCCCEEEEEEec-
Confidence 99998543 345678999999999999999995421 223333433 3444566666543
Q ss_pred CCCCCcceEEEEEec
Q 006905 598 DGPLEREKLLFAVKL 612 (626)
Q Consensus 598 ~~~~~~e~~l~~~K~ 612 (626)
.+.+++++|.
T Consensus 220 -----~dGl~~~~k~ 229 (229)
T 2avd_A 220 -----GDGLTLAFKI 229 (229)
T ss_dssp -----TTCEEEEEEC
T ss_pred -----CCceEEEEEC
Confidence 3568888873
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.49 E-value=6.8e-07 Score=89.52 Aligned_cols=98 Identities=13% Similarity=-0.027 Sum_probs=72.0
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCCCCCCCeeEEEecccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lpf~d~sFDlV~~~~~l 285 (626)
+.+|||||||+|.++..|++. .|+++|+++..+..+.. .+...++ .+.+..+|......+++.||+|+.....
T Consensus 22 g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~-N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGmG 100 (230)
T 3lec_A 22 GARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALK-NVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGMG 100 (230)
T ss_dssp TEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHH-HHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEEC
T ss_pred CCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEECchhhccccccccCEEEEeCCc
Confidence 358999999999999999986 48899998866554443 3445565 3777777866555454579998865432
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 286 IPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 286 ~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
.+-...+|.+..+.|+++|+|+++.
T Consensus 101 ---g~lI~~IL~~~~~~l~~~~~lIlqp 125 (230)
T 3lec_A 101 ---GRLIADILNNDIDKLQHVKTLVLQP 125 (230)
T ss_dssp ---HHHHHHHHHHTGGGGTTCCEEEEEE
T ss_pred ---hHHHHHHHHHHHHHhCcCCEEEEEC
Confidence 1112678889999999999999985
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.9e-07 Score=90.94 Aligned_cols=133 Identities=14% Similarity=0.119 Sum_probs=79.2
Q ss_pred ceeEEeccCchhhHhhhhhCC--CeEEEEeccCccCccc----HHHHHHhcccceec-ccccc--CCCCCCccceeeecc
Q 006905 470 YRNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINT----LGVIYERGLVGTYT-NWCEA--MSTYPRTYDLIHADS 540 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~----l~~~~~rgli~~~~-~~~e~--~~~yp~t~Dlih~~~ 540 (626)
-.+|||+|||+|.++..|++. +- ..|+.+|.++.+ ++.+.++.-+..++ |..+. +...+.+||+|.++.
T Consensus 78 ~~~vLDlG~G~G~~~~~la~~~g~~--~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~ 155 (233)
T 2ipx_A 78 GAKVLYLGAASGTTVSHVSDIVGPD--GLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADV 155 (233)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTT--CEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEECC
T ss_pred CCEEEEEcccCCHHHHHHHHHhCCC--cEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEcC
Confidence 458999999999999999876 21 167888998664 44444432233333 22221 111237999999954
Q ss_pred ccccCCCCCCH-HHHHHHhhhhccCCcEEEEEcChH----------HHHHHHHHHHhCCCeeEE-eecCCCCCCcceEEE
Q 006905 541 VFSLYKDRCET-EDILLEMDRILRPEGGVIFRDDVD----------ELVKVKRIIDALKWQSQI-VDHEDGPLEREKLLF 608 (626)
Q Consensus 541 ~f~~~~~~c~~-~~~l~E~dRiLRPgG~~i~~d~~~----------~~~~~~~~~~~l~w~~~~-~~~e~~~~~~e~~l~ 608 (626)
. ..+. ..++.++.|+|||||.+++.-... ...+-.+++....|+... .+.+.-+ ..--+++
T Consensus 156 ~------~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~-~~~~~v~ 228 (233)
T 2ipx_A 156 A------QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYE-RDHAVVV 228 (233)
T ss_dssp C------CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEEEEECTTTS-SSEEEEE
T ss_pred C------CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEEEEecCCcc-CCcEEEE
Confidence 3 1222 446788999999999999963321 122223555666676653 3333222 2345666
Q ss_pred EEe
Q 006905 609 AVK 611 (626)
Q Consensus 609 ~~K 611 (626)
++|
T Consensus 229 ~~~ 231 (233)
T 2ipx_A 229 GVY 231 (233)
T ss_dssp EEE
T ss_pred EEe
Confidence 665
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.48 E-value=1.3e-07 Score=93.01 Aligned_cols=92 Identities=13% Similarity=0.091 Sum_probs=70.1
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc----cceec-cccccCCCCCCccceeeecccccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL----VGTYT-NWCEAMSTYPRTYDLIHADSVFSL 544 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl----i~~~~-~~~e~~~~yp~t~Dlih~~~~f~~ 544 (626)
-.+|||+|||.|.++..|++.+ .+|+.+|.++.+++.+.++.- +.+.+ |..+.+. -+.+||+|.+..++.+
T Consensus 71 ~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~~~~~~ 146 (231)
T 1vbf_A 71 GQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYE-EEKPYDRVVVWATAPT 146 (231)
T ss_dssp TCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCG-GGCCEEEEEESSBBSS
T ss_pred CCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccc-cCCCccEEEECCcHHH
Confidence 4589999999999999999876 388999999999999988742 23333 2222111 1289999999888876
Q ss_pred CCCCCCHHHHHHHhhhhccCCcEEEEEcCh
Q 006905 545 YKDRCETEDILLEMDRILRPEGGVIFRDDV 574 (626)
Q Consensus 545 ~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~ 574 (626)
.. .++.|+|||||.+++....
T Consensus 147 ~~---------~~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 147 LL---------CKPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp CC---------HHHHHTEEEEEEEEEEECS
T ss_pred HH---------HHHHHHcCCCcEEEEEEcC
Confidence 54 4789999999999998653
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.47 E-value=5.4e-07 Score=98.00 Aligned_cols=111 Identities=9% Similarity=0.037 Sum_probs=78.4
Q ss_pred HHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCC--CCCC
Q 006905 201 IGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLP--YPSR 274 (626)
Q Consensus 201 L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lp--f~d~ 274 (626)
+..++... ++.+|||+|||+|..+..+++. .++++|+++..+.... +.+...++.+.+...|...++ ++++
T Consensus 238 ~~~~l~~~--~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~-~~~~~~g~~~~~~~~D~~~~~~~~~~~ 314 (429)
T 1sqg_A 238 CMTWLAPQ--NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVY-DNLKRLGMKATVKQGDGRYPSQWCGEQ 314 (429)
T ss_dssp HHHHHCCC--TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHH-HHHHHTTCCCEEEECCTTCTHHHHTTC
T ss_pred HHHHcCCC--CcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HHHHHcCCCeEEEeCchhhchhhcccC
Confidence 34444433 3559999999999999998874 5899999886665443 344455777777778877765 5667
Q ss_pred CeeEEEecc------ccccccc---------------cHHHHHHHHHhcccCCeEEEEEeC
Q 006905 275 AFDMAHCSR------CLIPWNQ---------------FGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 275 sFDlV~~~~------~l~h~~~---------------~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+||+|++.. .+.+-++ ....+|.++.++|||||++++++.
T Consensus 315 ~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystc 375 (429)
T 1sqg_A 315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC 375 (429)
T ss_dssp CEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred CCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 899999632 1211111 013789999999999999999864
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.3e-07 Score=93.39 Aligned_cols=94 Identities=14% Similarity=0.185 Sum_probs=71.5
Q ss_pred ceeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHHHh----cc---cceec-cccccCCCC--CCccceee
Q 006905 470 YRNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIYER----GL---VGTYT-NWCEAMSTY--PRTYDLIH 537 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~-~~~e~~~~y--p~t~Dlih 537 (626)
-.+|||+|||.|.++..|++. +. +|+.+|.++.+++.+.++ |+ +.+.+ |..+.+... +.+||+|.
T Consensus 55 ~~~vLdiG~G~G~~~~~la~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 131 (233)
T 2gpy_A 55 PARILEIGTAIGYSAIRMAQALPEA---TIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLF 131 (233)
T ss_dssp CSEEEEECCTTSHHHHHHHHHCTTC---EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred CCEEEEecCCCcHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEE
Confidence 357999999999999999876 33 789999998999988877 44 33333 222222222 47899999
Q ss_pred eccccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 538 ADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 538 ~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
++..+. +...+|.++.|+|||||.+++.+
T Consensus 132 ~~~~~~------~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 132 IDAAKG------QYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp EEGGGS------CHHHHHHHHGGGEEEEEEEEEET
T ss_pred ECCCHH------HHHHHHHHHHHHcCCCeEEEEEc
Confidence 866543 56889999999999999999975
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.46 E-value=7.3e-08 Score=93.86 Aligned_cols=139 Identities=11% Similarity=0.055 Sum_probs=100.1
Q ss_pred HHHhhhhcCCCCCceeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHHHhcc-cc----eeccccccCC-C
Q 006905 457 YKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIYERGL-VG----TYTNWCEAMS-T 528 (626)
Q Consensus 457 y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~~rgl-i~----~~~~~~e~~~-~ 528 (626)
|......+.. -.+|||+|||+|.+|..++.. .+ .|+++|.++.|++++.++.- .| +-+ ++... .
T Consensus 40 Y~~~~~~l~~---~~~VLDlGCG~GplAl~l~~~~p~a---~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~ 111 (200)
T 3fzg_A 40 YTYVFGNIKH---VSSILDFGCGFNPLALYQWNENEKI---IYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDV 111 (200)
T ss_dssp HHHHHHHSCC---CSEEEEETCTTHHHHHHHHCSSCCC---EEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHH
T ss_pred HHHHHhhcCC---CCeEEEecCCCCHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccC
Confidence 5554444544 668999999999999999766 44 79999999999999987642 12 111 22222 2
Q ss_pred CCCccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC---------h--HHHHHHHHHHHhCCCeeEEeecC
Q 006905 529 YPRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDD---------V--DELVKVKRIIDALKWQSQIVDHE 597 (626)
Q Consensus 529 yp~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~---------~--~~~~~~~~~~~~l~w~~~~~~~e 597 (626)
.|.+||+|-+..++++..++ +..+..+.+.|||||.||--++ | ......++.+..=.|.+......
T Consensus 112 ~~~~~DvVLa~k~LHlL~~~---~~al~~v~~~L~pggvfISfptksl~Gr~~gm~~~Y~~~~~~~~~~~~~~~~~~~~~ 188 (200)
T 3fzg_A 112 YKGTYDVVFLLKMLPVLKQQ---DVNILDFLQLFHTQNFVISFPIKSLSGKEKGMEENYQLWFESFTKGWIKILDSKVIG 188 (200)
T ss_dssp TTSEEEEEEEETCHHHHHHT---TCCHHHHHHTCEEEEEEEEEECCCCC--CTTCCCCHHHHHHHHTTTTSCEEEEEEET
T ss_pred CCCCcChhhHhhHHHhhhhh---HHHHHHHHHHhCCCCEEEEeChHHhcCCCcchhhhHHHHHHHhccCcceeeeeeeeC
Confidence 35999999998888887533 5677799999999999999872 1 24677777788888887755433
Q ss_pred CCCCCcceEEEEEe
Q 006905 598 DGPLEREKLLFAVK 611 (626)
Q Consensus 598 ~~~~~~e~~l~~~K 611 (626)
.|-+-|.+|
T Consensus 189 -----nEl~y~~~~ 197 (200)
T 3fzg_A 189 -----NELVYITSG 197 (200)
T ss_dssp -----TEEEEEECC
T ss_pred -----ceEEEEEec
Confidence 455666555
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.46 E-value=8.6e-08 Score=96.27 Aligned_cols=128 Identities=9% Similarity=0.122 Sum_probs=83.5
Q ss_pred ceeEEeccCchhhHhhhhhCC---CeEEEEeccCccCcccHHHHHHh----cc---cceec-cccccCCCC-----CCcc
Q 006905 470 YRNILDMNAHLGGFAAALIDF---PVWVMNVVPAEAKINTLGVIYER----GL---VGTYT-NWCEAMSTY-----PRTY 533 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~---~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~-~~~e~~~~y-----p~t~ 533 (626)
-++|||+|||.|..+.+|++. +. .|+.+|.++.+++.+.++ |+ |.+++ |..+.+..+ +.+|
T Consensus 61 ~~~VLDiG~G~G~~t~~la~~~~~~~---~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~f 137 (242)
T 3r3h_A 61 AKKVLELGTFTGYSALAMSLALPDDG---QVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQF 137 (242)
T ss_dssp CSEEEEEESCCSHHHHHHHHTSCTTC---EEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCE
T ss_pred cCEEEEeeCCcCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCE
Confidence 468999999999999999873 33 577888877777655444 54 33443 222222223 4799
Q ss_pred ceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh------------HHHHHHHHHHHhC----CCeeEEeecC
Q 006905 534 DLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV------------DELVKVKRIIDAL----KWQSQIVDHE 597 (626)
Q Consensus 534 Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~------------~~~~~~~~~~~~l----~w~~~~~~~e 597 (626)
|+|.++.. .-+...+|.++.|+|||||.+++.|.. .....++++.+.+ ++++.+...
T Consensus 138 D~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~- 210 (242)
T 3r3h_A 138 DFIFIDAD------KTNYLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVSLLAI- 210 (242)
T ss_dssp EEEEEESC------GGGHHHHHHHHHHHEEEEEEEEEECSSSSSCSSCTTCCCHHHHHHHHHHHHHHTCCSEEEEEESS-
T ss_pred eEEEEcCC------hHHhHHHHHHHHHhcCCCeEEEEECCccCCcccCccccChHHHHHHHHHHHHhhCCCEEEEEEEc-
Confidence 99988643 224567899999999999999995432 1233444444444 455555432
Q ss_pred CCCCCcceEEEEEec
Q 006905 598 DGPLEREKLLFAVKL 612 (626)
Q Consensus 598 ~~~~~~e~~l~~~K~ 612 (626)
.+.+++++|+
T Consensus 211 -----~dG~~~~~k~ 220 (242)
T 3r3h_A 211 -----ADGMFLVQPI 220 (242)
T ss_dssp -----SSCEEEEEEC
T ss_pred -----cCceEEEEEc
Confidence 3668888873
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=8.9e-09 Score=102.13 Aligned_cols=96 Identities=11% Similarity=0.136 Sum_probs=72.1
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc---cceeccccccCCCCCCccceeeecccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL---VGTYTNWCEAMSTYPRTYDLIHADSVF 542 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~~~~e~~~~yp~t~Dlih~~~~f 542 (626)
-.+|||+|||.|+++..|++.+. +|+.+|.++.++..+.++ |+ +.+++.-.+.+. -+.+||+|.++..|
T Consensus 79 ~~~vLD~gcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~ 154 (241)
T 3gdh_A 79 CDVVVDAFCGVGGNTIQFALTGM---RVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPW 154 (241)
T ss_dssp CSEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCC
T ss_pred CCEEEECccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCc
Confidence 35799999999999999999874 899999999999988765 32 333332111222 13899999999888
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
.+.... ...+.|+.|+|+|||.+++..
T Consensus 155 ~~~~~~---~~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 155 GGPDYA---TAETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp SSGGGG---GSSSBCTTTSCSSCHHHHHHH
T ss_pred CCcchh---hhHHHHHHhhcCCcceeHHHH
Confidence 875532 336779999999999987764
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.45 E-value=8.9e-07 Score=89.43 Aligned_cols=98 Identities=14% Similarity=-0.035 Sum_probs=71.2
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEcccccCCCCCCCeeEEEecccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAERLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~Lpf~d~sFDlV~~~~~l 285 (626)
+.+|||||||+|.++..|++. .|+++|+++..+..+.. .+...++. +.+..+|......++..||+|+.....
T Consensus 22 g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~-N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~IviagmG 100 (244)
T 3gnl_A 22 NERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQK-QVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGMG 100 (244)
T ss_dssp SEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHH-HHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEEC
T ss_pred CCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCCceEEEEecchhhccCccccccEEEEeCCc
Confidence 358999999999999999986 48899998865554443 34455653 677777765544444469998875432
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 286 IPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 286 ~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
.+-...+|.+..+.|+++|+|+++.
T Consensus 101 ---g~lI~~IL~~~~~~L~~~~~lIlq~ 125 (244)
T 3gnl_A 101 ---GTLIRTILEEGAAKLAGVTKLILQP 125 (244)
T ss_dssp ---HHHHHHHHHHTGGGGTTCCEEEEEE
T ss_pred ---hHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 1112678899999999999999984
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=3.9e-08 Score=102.55 Aligned_cols=95 Identities=17% Similarity=0.104 Sum_probs=59.5
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCcc----CcccHHHHHHh--cc--cceeccccc-cCCCCC-Cccceeeec
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEA----KINTLGVIYER--GL--VGTYTNWCE-AMSTYP-RTYDLIHAD 539 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~----~~~~l~~~~~r--gl--i~~~~~~~e-~~~~yp-~t~Dlih~~ 539 (626)
-.+|||+|||+|+++..|++++ .|+++|. +..++..+..+ |. +.+.. . .+...| .+||+|.|+
T Consensus 83 g~~VLDlGcG~G~~s~~la~~~----~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~D~~~l~~~~fD~V~sd 155 (305)
T 2p41_A 83 EGKVVDLGCGRGGWSYYCGGLK----NVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQS---GVDVFFIPPERCDTLLCD 155 (305)
T ss_dssp CEEEEEETCTTSHHHHHHHTST----TEEEEEEECCCSTTSCCCCCCCSTTGGGEEEEC---SCCTTTSCCCCCSEEEEC
T ss_pred CCEEEEEcCCCCHHHHHHHhcC----CEEEEeccccCchhHHHHHHhhhcCCCCeEEEe---ccccccCCcCCCCEEEEC
Confidence 4689999999999999999883 2445554 22332111111 11 22222 2 344445 899999998
Q ss_pred cccccCCCCCC---HHHHHHHhhhhccCCcEEEEE
Q 006905 540 SVFSLYKDRCE---TEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 540 ~~f~~~~~~c~---~~~~l~E~dRiLRPgG~~i~~ 571 (626)
..++.....-+ ...+|.++.|+|||||.|++.
T Consensus 156 ~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~k 190 (305)
T 2p41_A 156 IGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK 190 (305)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 88751110000 114789999999999999995
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.44 E-value=6.6e-07 Score=96.17 Aligned_cols=104 Identities=9% Similarity=-0.073 Sum_probs=74.9
Q ss_pred CCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC---CeEEEEcccccCCC----CCCCeeEEEe
Q 006905 212 IRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV---PALIGVLAAERLPY----PSRAFDMAHC 281 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~---~~~~~v~d~~~Lpf----~d~sFDlV~~ 281 (626)
+.+|||+|||+|.++..++.. .|+++|+++..+..+.. .+..+++ .+.+..+|+..+.. ...+||+|++
T Consensus 221 ~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~-n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~ 299 (396)
T 3c0k_A 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQ-NVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_dssp TCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHH-HHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEE
Confidence 458999999999999999886 58899998865554333 3445566 57788777554321 1468999999
Q ss_pred ccccc--------cccccHHHHHHHHHhcccCCeEEEEEeCCC
Q 006905 282 SRCLI--------PWNQFGGIYLIEVDRVLRPGGYWILSGPPI 316 (626)
Q Consensus 282 ~~~l~--------h~~~~~~~~L~Ei~RvLKPGG~lvis~pp~ 316 (626)
..... ........++.++.++|+|||+++++..+.
T Consensus 300 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 342 (396)
T 3c0k_A 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSG 342 (396)
T ss_dssp CCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 75321 112334688999999999999999987543
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.43 E-value=4.2e-07 Score=92.65 Aligned_cols=89 Identities=9% Similarity=0.040 Sum_probs=65.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHc---------CCCeEEEEcccccCCCCCCCeeEE
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALER---------GVPALIGVLAAERLPYPSRAFDMA 279 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~er---------g~~~~~~v~d~~~Lpf~d~sFDlV 279 (626)
...+|||||||+|.++..+++. .++++|+++. +++.|+++ ...+.+..+|..... ++||+|
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~-----~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~I 143 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEK-----ILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLI 143 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHH-----HHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHH-----HHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEE
Confidence 3569999999999999988875 5777777653 44444322 224566666765544 789999
Q ss_pred EeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 280 HCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 280 ~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
++.. .++..++.++.++|||||.+++..
T Consensus 144 i~d~------~dp~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 144 FCLQ------EPDIHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp EESS------CCCHHHHHHHHTTEEEEEEEEEEE
T ss_pred EECC------CChHHHHHHHHHhcCCCcEEEEEc
Confidence 9863 123558999999999999999964
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.43 E-value=5.4e-07 Score=93.42 Aligned_cols=88 Identities=19% Similarity=0.277 Sum_probs=58.2
Q ss_pred HHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCCCC
Q 006905 196 AYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLPYP 272 (626)
Q Consensus 196 ~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lpf~ 272 (626)
..++.+.+.+.... +.+|||||||+|.++..|+++ .++++|+++.++..+..+. ...+. .+.+..+|+..++++
T Consensus 29 ~i~~~i~~~~~~~~--~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~-~~~~~~~v~~~~~D~~~~~~~ 105 (299)
T 2h1r_A 29 GILDKIIYAAKIKS--SDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRC-LYEGYNNLEVYEGDAIKTVFP 105 (299)
T ss_dssp HHHHHHHHHHCCCT--TCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHH-HHTTCCCEEC----CCSSCCC
T ss_pred HHHHHHHHhcCCCC--cCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHH-HHcCCCceEEEECchhhCCcc
Confidence 45566666665443 458999999999999999986 6888888775554433332 23343 466777777777654
Q ss_pred CCCeeEEEecccccccc
Q 006905 273 SRAFDMAHCSRCLIPWN 289 (626)
Q Consensus 273 d~sFDlV~~~~~l~h~~ 289 (626)
+||+|+++... ++.
T Consensus 106 --~~D~Vv~n~py-~~~ 119 (299)
T 2h1r_A 106 --KFDVCTANIPY-KIS 119 (299)
T ss_dssp --CCSEEEEECCG-GGH
T ss_pred --cCCEEEEcCCc-ccc
Confidence 79999998765 444
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=6.3e-08 Score=99.58 Aligned_cols=95 Identities=16% Similarity=0.114 Sum_probs=61.1
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc--------cceeccccccCCCCC-Cccceeeecc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL--------VGTYTNWCEAMSTYP-RTYDLIHADS 540 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl--------i~~~~~~~e~~~~yp-~t~Dlih~~~ 540 (626)
-.+|||+|||+|+|+..|++++ .|+++|.++ |+..+.++.+ +.++.. +..+..+| .+||+|.|+.
T Consensus 83 g~~VLDlGcGtG~~s~~la~~~----~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~-~~D~~~l~~~~fD~Vvsd~ 156 (276)
T 2wa2_A 83 KGTVVDLGCGRGSWSYYAASQP----NVREVKAYT-LGTSGHEKPRLVETFGWNLITFKS-KVDVTKMEPFQADTVLCDI 156 (276)
T ss_dssp CEEEEEESCTTCHHHHHHHTST----TEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEEC-SCCGGGCCCCCCSEEEECC
T ss_pred CCEEEEeccCCCHHHHHHHHcC----CEEEEECch-hhhhhhhchhhhhhcCCCeEEEec-cCcHhhCCCCCcCEEEECC
Confidence 4679999999999999999872 467777774 5333322222 122200 12333455 8999999977
Q ss_pred ccccCCCC-CCHH---HHHHHhhhhccCCc--EEEEE
Q 006905 541 VFSLYKDR-CETE---DILLEMDRILRPEG--GVIFR 571 (626)
Q Consensus 541 ~f~~~~~~-c~~~---~~l~E~dRiLRPgG--~~i~~ 571 (626)
. ...... -+.. .+|.++.|+||||| .|++.
T Consensus 157 ~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~ 192 (276)
T 2wa2_A 157 G-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVK 192 (276)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred C-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEE
Confidence 6 222110 0001 37899999999999 99985
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=2.3e-07 Score=99.35 Aligned_cols=104 Identities=13% Similarity=0.038 Sum_probs=74.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEcccccCCC----CCCCeeEEEecc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAERLPY----PSRAFDMAHCSR 283 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~~Lpf----~d~sFDlV~~~~ 283 (626)
.+.+|||+|||+|.++..++.. .|+++|+++..+..+.. .+..+++. +.+..+|+..+.. .+++||+|++..
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~-n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp 287 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEE-NARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 287 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHH-HHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHH-HHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence 3568999999999999998875 78899998865554433 33444554 6777777654321 256899999965
Q ss_pred cccccc--------ccHHHHHHHHHhcccCCeEEEEEeCC
Q 006905 284 CLIPWN--------QFGGIYLIEVDRVLRPGGYWILSGPP 315 (626)
Q Consensus 284 ~l~h~~--------~~~~~~L~Ei~RvLKPGG~lvis~pp 315 (626)
...... .....++.++.++|+|||.++++..+
T Consensus 288 P~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 288 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 331111 22357899999999999999998753
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.42 E-value=6.5e-07 Score=96.50 Aligned_cols=102 Identities=14% Similarity=-0.021 Sum_probs=71.2
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccC-CCCCCCeeEEEeccccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERL-PYPSRAFDMAHCSRCLIPW 288 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~L-pf~d~sFDlV~~~~~l~h~ 288 (626)
+.+|||+|||+|.++..++.. .|+++|+++..+..+..+ +..+++...+...|+..+ +...+.||+|++.......
T Consensus 215 g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n-~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~~ 293 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQA-ALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTLVK 293 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCCCS
T ss_pred CCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHH-HHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcCCC
Confidence 568999999999999999886 488888888666544433 334566655667775443 2223349999996543111
Q ss_pred --------cccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 289 --------NQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 289 --------~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
......++.++.++|||||+|++...
T Consensus 294 ~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~ 327 (393)
T 4dmg_A 294 RPEELPAMKRHLVDLVREALRLLAEEGFLWLSSC 327 (393)
T ss_dssp SGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 11225788999999999999997654
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=2.7e-07 Score=94.98 Aligned_cols=129 Identities=12% Similarity=0.237 Sum_probs=89.8
Q ss_pred eeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHh----cc---cceec-cccccCCCCCCcc---ceeee
Q 006905 471 RNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYER----GL---VGTYT-NWCEAMSTYPRTY---DLIHA 538 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~-~~~e~~~~yp~t~---Dlih~ 538 (626)
.+|||+|||+|.++.+|++. +. +|+.+|.++.++.++.++ |+ +.+++ ||.+. .+.+| |+|.+
T Consensus 125 ~~vLDlG~GsG~~~~~la~~~~~---~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~---~~~~f~~~D~Ivs 198 (284)
T 1nv8_A 125 KTVADIGTGSGAIGVSVAKFSDA---IVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP---FKEKFASIEMILS 198 (284)
T ss_dssp CEEEEESCTTSHHHHHHHHHSSC---EEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG---GGGGTTTCCEEEE
T ss_pred CEEEEEeCchhHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh---cccccCCCCEEEE
Confidence 47999999999999999877 33 799999999999988765 43 33443 44442 34689 99999
Q ss_pred ccccc-----------cCC-----CCCCHHHHHHHhh-hhccCCcEEEEEcChHHHHHHHHHHHhCCCeeEEeecCCCCC
Q 006905 539 DSVFS-----------LYK-----DRCETEDILLEMD-RILRPEGGVIFRDDVDELVKVKRIIDALKWQSQIVDHEDGPL 601 (626)
Q Consensus 539 ~~~f~-----------~~~-----~~c~~~~~l~E~d-RiLRPgG~~i~~d~~~~~~~~~~~~~~l~w~~~~~~~e~~~~ 601 (626)
+--+. +.. ..++-..++.++- ++|+|||++++.-..+....+.+++... ....|..
T Consensus 199 nPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~q~~~v~~~~~~~---~~~~D~~---- 271 (284)
T 1nv8_A 199 NPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEELKKIVSDT---VFLKDSA---- 271 (284)
T ss_dssp CCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHHHTTTSTTC---EEEECTT----
T ss_pred cCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECchHHHHHHHHHHhC---CeecccC----
Confidence 62221 110 0122236899999 9999999999976666666777776665 2233322
Q ss_pred CcceEEEEEec
Q 006905 602 EREKLLFAVKL 612 (626)
Q Consensus 602 ~~e~~l~~~K~ 612 (626)
+.+++++++++
T Consensus 272 g~~R~~~~~~k 282 (284)
T 1nv8_A 272 GKYRFLLLNRR 282 (284)
T ss_dssp SSEEEEEEECC
T ss_pred CCceEEEEEEc
Confidence 56788888765
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=1.8e-06 Score=93.91 Aligned_cols=96 Identities=18% Similarity=0.140 Sum_probs=69.2
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWN 289 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~ 289 (626)
+.+|||+|||+|.++..|++. .|+++|+++.++..+.. .+..+++.+.+..+|+..+.. . +||+|++.....
T Consensus 291 ~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~-n~~~ngl~v~~~~~d~~~~~~-~-~fD~Vv~dPPr~--- 364 (425)
T 2jjq_A 291 GEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARR-NVEINNVDAEFEVASDREVSV-K-GFDTVIVDPPRA--- 364 (425)
T ss_dssp SSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHHTCCEEEEECCTTTCCC-T-TCSEEEECCCTT---
T ss_pred CCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHH-HHHHcCCcEEEEECChHHcCc-c-CCCEEEEcCCcc---
Confidence 458999999999999999986 68899998866654443 334456567788888777643 2 899999976431
Q ss_pred ccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 290 QFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 290 ~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.....++..+ +.|+|||.++++..
T Consensus 365 g~~~~~~~~l-~~l~p~givyvsc~ 388 (425)
T 2jjq_A 365 GLHPRLVKRL-NREKPGVIVYVSCN 388 (425)
T ss_dssp CSCHHHHHHH-HHHCCSEEEEEESC
T ss_pred chHHHHHHHH-HhcCCCcEEEEECC
Confidence 1113455555 45999999999854
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.41 E-value=3.2e-07 Score=96.05 Aligned_cols=107 Identities=14% Similarity=0.081 Sum_probs=69.1
Q ss_pred ceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhcc-----------------cceec-cccccCCCCC
Q 006905 470 YRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERGL-----------------VGTYT-NWCEAMSTYP 530 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rgl-----------------i~~~~-~~~e~~~~yp 530 (626)
-.+|||+|||.|.++.+|++. +- ...|+.+|.++.+++.+.++.- +.+++ |..+....++
T Consensus 106 g~~VLDiG~G~G~~~~~la~~~g~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~~ 184 (336)
T 2b25_A 106 GDTVLEAGSGSGGMSLFLSKAVGS-QGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIK 184 (336)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCT-TCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC----
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccccC
Confidence 458999999999999999875 21 0268889999899998877531 23333 3333222345
Q ss_pred -CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh-HHHHHHHHHHH
Q 006905 531 -RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV-DELVKVKRIID 585 (626)
Q Consensus 531 -~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~-~~~~~~~~~~~ 585 (626)
.+||+|.++.. +...+|.++.|+|||||.+++.... +.+.++.+.++
T Consensus 185 ~~~fD~V~~~~~--------~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~ 233 (336)
T 2b25_A 185 SLTFDAVALDML--------NPHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIR 233 (336)
T ss_dssp ---EEEEEECSS--------STTTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred CCCeeEEEECCC--------CHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHH
Confidence 68999998421 2234789999999999999987543 33444444444
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=98.41 E-value=1.3e-06 Score=87.58 Aligned_cols=134 Identities=11% Similarity=0.112 Sum_probs=77.8
Q ss_pred ceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccH----HHHHHhc-ccceeccccccC--CCCCCccceeeeccc
Q 006905 470 YRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTL----GVIYERG-LVGTYTNWCEAM--STYPRTYDLIHADSV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l----~~~~~rg-li~~~~~~~e~~--~~yp~t~Dlih~~~~ 541 (626)
-.+|||+|||+|+++..|++. + -.-.|+++|.++.++ ..+.+|. +.-...|-.... ...+.+||+|.++..
T Consensus 77 g~~VLDlG~GtG~~t~~la~~v~-~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~a 155 (232)
T 3id6_C 77 GTKVLYLGAASGTTISHVSDIIE-LNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIA 155 (232)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHT-TTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEECCC
T ss_pred CCEEEEEeecCCHHHHHHHHHhC-CCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEecCC
Confidence 467999999999999988763 1 001578889998775 3444442 222222322111 122478999998754
Q ss_pred cccCCCCCCHHHHHH-HhhhhccCCcEEEEEc----------ChHHHHHHHHHHHhCCCeeE-EeecCCCCC-CcceEEE
Q 006905 542 FSLYKDRCETEDILL-EMDRILRPEGGVIFRD----------DVDELVKVKRIIDALKWQSQ-IVDHEDGPL-EREKLLF 608 (626)
Q Consensus 542 f~~~~~~c~~~~~l~-E~dRiLRPgG~~i~~d----------~~~~~~~~~~~~~~l~w~~~-~~~~e~~~~-~~e~~l~ 608 (626)
+ .+...+|. .+.|+|||||.++++- ..++...+...++.-..+.. ..+.| |. ...-+++
T Consensus 156 ~------~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~~~~l~--p~~~~h~~v~ 227 (232)
T 3id6_C 156 Q------PDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLD--PYDKDHAIVL 227 (232)
T ss_dssp C------TTHHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEEEECT--TTCSSCEEEE
T ss_pred C------hhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEEEeccC--CCcCceEEEE
Confidence 3 34455555 5567999999999862 11222333344444344433 22333 33 2456777
Q ss_pred EEec
Q 006905 609 AVKL 612 (626)
Q Consensus 609 ~~K~ 612 (626)
++|+
T Consensus 228 ~~~~ 231 (232)
T 3id6_C 228 SKYK 231 (232)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 7775
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=9.3e-07 Score=91.79 Aligned_cols=141 Identities=16% Similarity=0.110 Sum_probs=89.4
Q ss_pred ceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhc------c----cceec-cccccCCC-CCCcccee
Q 006905 470 YRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERG------L----VGTYT-NWCEAMST-YPRTYDLI 536 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rg------l----i~~~~-~~~e~~~~-yp~t~Dli 536 (626)
-.+|||+|||.|+++..|++. ++ .+|+.+|.++.+++++.++- + +.++. |..+-... -+++||+|
T Consensus 96 ~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 96 PERVLIIGGGDGGVLREVLRHGTV--EHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp CCEEEEEECTTSHHHHHHHTCTTC--CEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCeEEEEcCCCCHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 478999999999999999987 33 37889999989999888753 1 22222 22211111 14899999
Q ss_pred eeccccccCCCCCC-HHHHHHHhhhhccCCcEEEEEcCh-----HHHHHHHHHHHhCCCeeE-EeecC--CCCCCcceEE
Q 006905 537 HADSVFSLYKDRCE-TEDILLEMDRILRPEGGVIFRDDV-----DELVKVKRIIDALKWQSQ-IVDHE--DGPLEREKLL 607 (626)
Q Consensus 537 h~~~~f~~~~~~c~-~~~~l~E~dRiLRPgG~~i~~d~~-----~~~~~~~~~~~~l~w~~~-~~~~e--~~~~~~e~~l 607 (626)
.++........... -..++.++.|+|||||.+++.... .....+.+.++...+... ..... .-+.+.-.++
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~~~~vP~yp~g~w~f~ 253 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYALMHVPTYPCGSIGTL 253 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEEECCCTTSTTSCCEEE
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEEEeecccccCcceEEE
Confidence 99655433221111 157899999999999999996332 345666666666655433 33221 1122445688
Q ss_pred EEEec
Q 006905 608 FAVKL 612 (626)
Q Consensus 608 ~~~K~ 612 (626)
+|.|.
T Consensus 254 ~as~~ 258 (304)
T 3bwc_A 254 VCSKK 258 (304)
T ss_dssp EEESS
T ss_pred EEeCC
Confidence 89886
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.41 E-value=6.3e-07 Score=99.03 Aligned_cols=103 Identities=15% Similarity=0.182 Sum_probs=71.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCCC-CCCCeeEEEecc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLPY-PSRAFDMAHCSR 283 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lpf-~d~sFDlV~~~~ 283 (626)
++.+|||+|||+|..+..|++. .|+++|+++..+..+.. .+...|+ .+.+...|...++. .+++||+|++..
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~-n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~ 195 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHA-NISRCGISNVALTHFDGRVFGAAVPEMFDAILLDA 195 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHH-HHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEEC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECC
Confidence 4569999999999999988874 48899998755543333 3334455 46667777766653 457899999721
Q ss_pred ------ccc-------cccc--------cHHHHHHHHHhcccCCeEEEEEeC
Q 006905 284 ------CLI-------PWNQ--------FGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 284 ------~l~-------h~~~--------~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.+. +|.. ....+|.++.++|||||+|++++-
T Consensus 196 PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTc 247 (479)
T 2frx_A 196 PCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTC 247 (479)
T ss_dssp CCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred CcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 111 1211 124689999999999999999864
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=3e-07 Score=101.07 Aligned_cols=110 Identities=15% Similarity=0.195 Sum_probs=74.7
Q ss_pred HHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCC-CCCCC
Q 006905 202 GKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLP-YPSRA 275 (626)
Q Consensus 202 ~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lp-f~d~s 275 (626)
..++... ++.+|||+|||+|..+..|+++ .|+++|+++..+..+. +.+...|+.+.+...|...++ +.+++
T Consensus 94 a~~L~~~--~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~-~n~~r~G~~v~~~~~Da~~l~~~~~~~ 170 (464)
T 3m6w_A 94 GVLLDPK--PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLL-ENVERWGAPLAVTQAPPRALAEAFGTY 170 (464)
T ss_dssp HHHHCCC--TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHH-HHHHHHCCCCEEECSCHHHHHHHHCSC
T ss_pred HHhcCcC--CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCeEEEEECCHHHhhhhcccc
Confidence 3444433 3559999999999999988864 4889999886554333 334445666667777766665 34678
Q ss_pred eeEEEeccc------cc-------cccc--------cHHHHHHHHHhcccCCeEEEEEeC
Q 006905 276 FDMAHCSRC------LI-------PWNQ--------FGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 276 FDlV~~~~~------l~-------h~~~--------~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
||+|++... +. .|.. ....+|.++.++|||||.|++++-
T Consensus 171 FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTC 230 (464)
T 3m6w_A 171 FHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTC 230 (464)
T ss_dssp EEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred CCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 999995211 11 1111 115689999999999999999864
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=2.4e-07 Score=98.71 Aligned_cols=97 Identities=15% Similarity=0.195 Sum_probs=71.3
Q ss_pred CCceeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHHHhcccceeccccccCCCCCCccceeeeccccccC
Q 006905 468 GRYRNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYPRTYDLIHADSVFSLY 545 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~yp~t~Dlih~~~~f~~~ 545 (626)
....+|||+|||.|.++..|++. ++ .++.+|. +.+++.+.++.-+..... ..+.++|.. |+|++..+++++
T Consensus 202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~-~~~~~~a~~~~~v~~~~~--d~~~~~p~~-D~v~~~~vlh~~ 274 (368)
T 3reo_A 202 EGLTTIVDVGGGTGAVASMIVAKYPSI---NAINFDL-PHVIQDAPAFSGVEHLGG--DMFDGVPKG-DAIFIKWICHDW 274 (368)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTC---EEEEEEC-HHHHTTCCCCTTEEEEEC--CTTTCCCCC-SEEEEESCGGGB
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCC---EEEEEeh-HHHHHhhhhcCCCEEEec--CCCCCCCCC-CEEEEechhhcC
Confidence 55789999999999999999874 33 4666777 366666554432333321 223456755 999999999988
Q ss_pred CCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 546 KDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 546 ~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
.+. +...+|.++.|+|||||+++|.|
T Consensus 275 ~~~-~~~~~l~~~~~~L~pgG~l~i~e 300 (368)
T 3reo_A 275 SDE-HCLKLLKNCYAALPDHGKVIVAE 300 (368)
T ss_dssp CHH-HHHHHHHHHHHHSCTTCEEEEEE
T ss_pred CHH-HHHHHHHHHHHHcCCCCEEEEEE
Confidence 753 34579999999999999999975
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.40 E-value=2.9e-07 Score=91.45 Aligned_cols=127 Identities=12% Similarity=0.152 Sum_probs=85.3
Q ss_pred eeEEeccCchhhHhhhhhCC---CeEEEEeccCccCcccHHHHHHh----cc---cceec-cccccCCCCC-----Cccc
Q 006905 471 RNILDMNAHLGGFAAALIDF---PVWVMNVVPAEAKINTLGVIYER----GL---VGTYT-NWCEAMSTYP-----RTYD 534 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~---~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~-~~~e~~~~yp-----~t~D 534 (626)
++|||+|||.|.++.+|++. +. .|+.+|.++.+++++.++ |+ |.+.. +..+.+..+| .+||
T Consensus 74 ~~vLdiG~G~G~~~~~la~~~~~~~---~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 74 KQVLEIGVFRGYSALAMALQLPPDG---QIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred CEEEEecCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 58999999999999999875 33 688899998899888765 44 33333 2222222222 7899
Q ss_pred eeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh------------HHHHHHHHHHHh----CCCeeEEeecCC
Q 006905 535 LIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV------------DELVKVKRIIDA----LKWQSQIVDHED 598 (626)
Q Consensus 535 lih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~------------~~~~~~~~~~~~----l~w~~~~~~~e~ 598 (626)
+|.++.. .-+...++.++.|+|||||.+++.+.. .....++++.+. -++...+...
T Consensus 151 ~V~~d~~------~~~~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~-- 222 (232)
T 3cbg_A 151 LIFIDAD------KRNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRISVIPL-- 222 (232)
T ss_dssp EEEECSC------GGGHHHHHHHHHHTEEEEEEEEEECTTGGGGGGCSSCCSHHHHHHHHHHHHHTTCTTEEEEEECS--
T ss_pred EEEECCC------HHHHHHHHHHHHHHcCCCeEEEEeCCCcCCccCCcccCChHHHHHHHHHHHHhhCCCeEEEEEEc--
Confidence 9998543 235578999999999999999996422 223444444443 3566555432
Q ss_pred CCCCcceEEEEEec
Q 006905 599 GPLEREKLLFAVKL 612 (626)
Q Consensus 599 ~~~~~e~~l~~~K~ 612 (626)
.+.+.+++|.
T Consensus 223 ----~dG~~~~~~~ 232 (232)
T 3cbg_A 223 ----GDGMTLALKK 232 (232)
T ss_dssp ----BTCEEEEEEC
T ss_pred ----CCeEEEEEeC
Confidence 3568888874
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=7.3e-07 Score=102.98 Aligned_cols=103 Identities=13% Similarity=0.029 Sum_probs=75.4
Q ss_pred CCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCC---eEEEEccccc-CCCCCCCeeEEEeccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVP---ALIGVLAAER-LPYPSRAFDMAHCSRC 284 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~---~~~~v~d~~~-Lpf~d~sFDlV~~~~~ 284 (626)
+.+|||+|||+|.++..++.. .|+++|+++..+..+..+. ..+++. +.+..+|... ++...++||+|++...
T Consensus 540 g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~-~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP 618 (703)
T 3v97_A 540 GKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNL-RLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPP 618 (703)
T ss_dssp TCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHH-HHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCC
T ss_pred CCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH-HHcCCCccceEEEecCHHHHHHhcCCCccEEEECCc
Confidence 458999999999999998875 4889999886665544433 345554 7788888554 4445678999999653
Q ss_pred cc----------cccccHHHHHHHHHhcccCCeEEEEEeCC
Q 006905 285 LI----------PWNQFGGIYLIEVDRVLRPGGYWILSGPP 315 (626)
Q Consensus 285 l~----------h~~~~~~~~L~Ei~RvLKPGG~lvis~pp 315 (626)
.. +...+...++.++.++|+|||+|+++...
T Consensus 619 ~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 619 TFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp SBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 21 11223367899999999999999998754
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.39 E-value=1.1e-06 Score=92.48 Aligned_cols=102 Identities=13% Similarity=0.086 Sum_probs=72.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhC---------CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEe
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR---------NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHC 281 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~---------~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~ 281 (626)
...+|||+|||+|.++..+++. .++++|+++..+..+..+.. ..++.+.+..+|... +.+.+.||+|++
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~-~~g~~~~i~~~D~l~-~~~~~~fD~Ii~ 207 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGAD-LQRQKMTLLHQDGLA-NLLVDPVDVVIS 207 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHH-HHTCCCEEEESCTTS-CCCCCCEEEEEE
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHH-hCCCCceEEECCCCC-ccccCCccEEEE
Confidence 3568999999999998877653 47888887755544443333 346667777777544 234578999999
Q ss_pred ccccccccccH-----------------HHHHHHHHhcccCCeEEEEEeC
Q 006905 282 SRCLIPWNQFG-----------------GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 282 ~~~l~h~~~~~-----------------~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+..+.++..+. ..++..+.+.|+|||++++..|
T Consensus 208 NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 208 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 98764442211 2579999999999999999875
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=1.6e-06 Score=91.37 Aligned_cols=92 Identities=8% Similarity=0.032 Sum_probs=69.4
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCCCCCCCeeEEEecccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLPYPSRAFDMAHCSRCLIP 287 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h 287 (626)
+.+|||+|||+|.++.. ++. .++++|+++..+..+. +.+..+++ .+.+..+|...+. ++||+|++....
T Consensus 196 ~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~-~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP~-- 268 (336)
T 2yx1_A 196 NDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLK-KNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLPK-- 268 (336)
T ss_dssp TCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCTT--
T ss_pred CCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCcH--
Confidence 45899999999999999 764 5889999886555433 33444555 4778888877665 789999996432
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 288 WNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 288 ~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
. ...++.++.++|+|||.+++..
T Consensus 269 ~---~~~~l~~~~~~L~~gG~l~~~~ 291 (336)
T 2yx1_A 269 F---AHKFIDKALDIVEEGGVIHYYT 291 (336)
T ss_dssp T---GGGGHHHHHHHEEEEEEEEEEE
T ss_pred h---HHHHHHHHHHHcCCCCEEEEEE
Confidence 1 2368899999999999999974
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.39 E-value=2.1e-07 Score=90.50 Aligned_cols=98 Identities=12% Similarity=0.076 Sum_probs=71.3
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceec-cccccCCCCCCccceeeeccccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYT-NWCEAMSTYPRTYDLIHADSVFS 543 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~-~~~e~~~~yp~t~Dlih~~~~f~ 543 (626)
.+|||+|||+|.++..++.++. -+|+.+|.++.+++.+.++ |+ +.+++ |..+.....+.+||+|.++..|.
T Consensus 56 ~~vLDlgcG~G~~~~~l~~~~~--~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~ 133 (202)
T 2fpo_A 56 AQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 133 (202)
T ss_dssp CEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred CeEEEeCCCcCHHHHHHHhcCC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC
Confidence 4799999999999998777754 2789999999999988765 32 33444 22221222237999999977754
Q ss_pred cCCCCCCHHHHHHHhh--hhccCCcEEEEEcCh
Q 006905 544 LYKDRCETEDILLEMD--RILRPEGGVIFRDDV 574 (626)
Q Consensus 544 ~~~~~c~~~~~l~E~d--RiLRPgG~~i~~d~~ 574 (626)
. -..+.++.++. |+|||||.+++....
T Consensus 134 ~----~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 134 R----GLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp T----TTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred C----CcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 1 25577888885 479999999997554
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.39 E-value=3.5e-07 Score=90.86 Aligned_cols=129 Identities=12% Similarity=0.150 Sum_probs=85.8
Q ss_pred ceeEEeccCchhhHhhhhhCC---CeEEEEeccCccCcccHHHHHHh----cc---cceec-cccccCCC----------
Q 006905 470 YRNILDMNAHLGGFAAALIDF---PVWVMNVVPAEAKINTLGVIYER----GL---VGTYT-NWCEAMST---------- 528 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~---~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~-~~~e~~~~---------- 528 (626)
-.+|||+|||.|.++..|++. +. +|+.+|.++.+++.+.++ |+ +.+.+ |..+.+..
T Consensus 61 ~~~VLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 137 (239)
T 2hnk_A 61 AKRIIEIGTFTGYSSLCFASALPEDG---KILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSW 137 (239)
T ss_dssp CSEEEEECCTTCHHHHHHHHHSCTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred cCEEEEEeCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccc
Confidence 357999999999999999875 33 788899998899888776 44 22322 21121111
Q ss_pred ---C--C-CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC------------hHHHHHHHH----HHHh
Q 006905 529 ---Y--P-RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDD------------VDELVKVKR----IIDA 586 (626)
Q Consensus 529 ---y--p-~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~------------~~~~~~~~~----~~~~ 586 (626)
| + .+||+|.++.. .-++..+|.++.|+|||||.+++.+. ......+++ +...
T Consensus 138 ~~~f~~~~~~fD~I~~~~~------~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (239)
T 2hnk_A 138 ASDFAFGPSSIDLFFLDAD------KENYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEPSTVGIRKFNELVYND 211 (239)
T ss_dssp GTTTCCSTTCEEEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHC
T ss_pred cccccCCCCCcCEEEEeCC------HHHHHHHHHHHHHHcCCCeEEEEEccccCCcccCccccchHHHHHHHHHHHHhhC
Confidence 2 2 68999988532 22456899999999999999999751 112223333 3444
Q ss_pred CCCeeEEeecCCCCCCcceEEEEEecc
Q 006905 587 LKWQSQIVDHEDGPLEREKLLFAVKLY 613 (626)
Q Consensus 587 l~w~~~~~~~e~~~~~~e~~l~~~K~~ 613 (626)
-++.+.+.-.. ..+.+++|+.
T Consensus 212 ~~~~~~~~p~~------~g~~~~~~~~ 232 (239)
T 2hnk_A 212 SLVDVSLVPIA------DGVSLVRKRL 232 (239)
T ss_dssp TTEEEEEECST------TCEEEEEECC
T ss_pred CCeEEEEEEcC------CceEeeeehh
Confidence 55666655433 4588888875
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.39 E-value=2.7e-07 Score=89.60 Aligned_cols=91 Identities=18% Similarity=0.114 Sum_probs=68.4
Q ss_pred ceeEEeccCchhhHhhhhhCCC---eEEEEeccCccCcccHHHHHHh----cc--cceeccccccCCCCC--Cccceeee
Q 006905 470 YRNILDMNAHLGGFAAALIDFP---VWVMNVVPAEAKINTLGVIYER----GL--VGTYTNWCEAMSTYP--RTYDLIHA 538 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~---v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~~~~e~~~~yp--~t~Dlih~ 538 (626)
-.+|||+|||.|.++..|++.. . +|+.+|.++.+++.+.++ |+ +...+. .....+| .+||+|.+
T Consensus 78 ~~~vLdiG~G~G~~~~~l~~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~--d~~~~~~~~~~fD~v~~ 152 (215)
T 2yxe_A 78 GMKVLEIGTGCGYHAAVTAEIVGEDG---LVVSIERIPELAEKAERTLRKLGYDNVIVIVG--DGTLGYEPLAPYDRIYT 152 (215)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHHTCTTEEEEES--CGGGCCGGGCCEEEEEE
T ss_pred CCEEEEECCCccHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCeEEEEC--CcccCCCCCCCeeEEEE
Confidence 4589999999999999998753 3 688899998999988876 32 222221 1122333 78999999
Q ss_pred ccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh
Q 006905 539 DSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV 574 (626)
Q Consensus 539 ~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~ 574 (626)
..++.+.. .++.|+|||||.+++....
T Consensus 153 ~~~~~~~~---------~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 153 TAAGPKIP---------EPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp SSBBSSCC---------HHHHHTEEEEEEEEEEESS
T ss_pred CCchHHHH---------HHHHHHcCCCcEEEEEECC
Confidence 88887654 4889999999999998654
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=2e-07 Score=100.61 Aligned_cols=112 Identities=9% Similarity=-0.006 Sum_probs=77.9
Q ss_pred ceeEEeccCchhhHhhhhhC-CCeEEEEeccCccCcccHHHHHHh-----------cc----cceeccccccCCCCC---
Q 006905 470 YRNILDMNAHLGGFAAALID-FPVWVMNVVPAEAKINTLGVIYER-----------GL----VGTYTNWCEAMSTYP--- 530 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~-~~v~~mnv~~~~~~~~~l~~~~~r-----------gl----i~~~~~~~e~~~~yp--- 530 (626)
-.+|||+|||+|.++..++. .+. -.|+++|.++.++.++.+. |+ |.+++ ..+...|
T Consensus 174 gd~VLDLGCGtG~l~l~lA~~~g~--~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~---GD~~~lp~~d 248 (438)
T 3uwp_A 174 DDLFVDLGSGVGQVVLQVAAATNC--KHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLER---GDFLSEEWRE 248 (438)
T ss_dssp TCEEEEESCTTSHHHHHHHHHCCC--SEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEE---CCTTSHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEE---CcccCCcccc
Confidence 55799999999999988874 343 2589999998888887652 33 33333 4555544
Q ss_pred --CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcChHH------HHHHHHHHHhCCCe
Q 006905 531 --RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDVDE------LVKVKRIIDALKWQ 590 (626)
Q Consensus 531 --~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~~~------~~~~~~~~~~l~w~ 590 (626)
..||+|.++..+ +. -++...|.||.|+|||||.||+.|.... -..+..+...|++.
T Consensus 249 ~~~~aDVVf~Nn~~-F~---pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d~~i~~rnl~di~~il~v~ 312 (438)
T 3uwp_A 249 RIANTSVIFVNNFA-FG---PEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINSRNLSDIGTIMRVV 312 (438)
T ss_dssp HHHTCSEEEECCTT-CC---HHHHHHHHHHHTTSCTTCEEEESSCSSCTTCCCCSSSTTSGGGSEEEE
T ss_pred ccCCccEEEEcccc-cC---chHHHHHHHHHHcCCCCcEEEEeecccCCCCCCCcccccChhhhheee
Confidence 379999986553 22 2567889999999999999999865421 12344455555553
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=2e-06 Score=85.81 Aligned_cols=97 Identities=13% Similarity=0.014 Sum_probs=69.5
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEccc-ccCCCCCCCeeEEEeccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAA-ERLPYPSRAFDMAHCSRC 284 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~-~~Lpf~d~sFDlV~~~~~ 284 (626)
+.+|||||||+|.++..|+.. .|+++|+++..+..+. +.+...++. +.+..+|. ..++. ...||+|+....
T Consensus 16 g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~-~N~~~~gl~~~i~~~~~d~l~~l~~-~~~~D~IviaG~ 93 (225)
T 3kr9_A 16 GAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAV-KNVEAHGLKEKIQVRLANGLAAFEE-TDQVSVITIAGM 93 (225)
T ss_dssp TEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHH-HHHHHTTCTTTEEEEECSGGGGCCG-GGCCCEEEEEEE
T ss_pred CCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCCceEEEEECchhhhccc-CcCCCEEEEcCC
Confidence 458999999999999999986 4889999886555443 344455663 66777774 34442 226999887553
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 285 LIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 285 l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
- ..-...++.+....|+|+|+|+++.
T Consensus 94 G---g~~i~~Il~~~~~~L~~~~~lVlq~ 119 (225)
T 3kr9_A 94 G---GRLIARILEEGLGKLANVERLILQP 119 (225)
T ss_dssp C---HHHHHHHHHHTGGGCTTCCEEEEEE
T ss_pred C---hHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 2 1112678999999999999999974
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.1e-06 Score=88.13 Aligned_cols=96 Identities=14% Similarity=0.014 Sum_probs=66.0
Q ss_pred ceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhc----ccc-eeccccccCCCCC---Cccceeeecc
Q 006905 470 YRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERG----LVG-TYTNWCEAMSTYP---RTYDLIHADS 540 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rg----li~-~~~~~~e~~~~yp---~t~Dlih~~~ 540 (626)
--+|||+|||.|.++.+|++. + -.-.|..+|.++.|++.+.++- -+. +..+-+ ....|| .++|+|.++
T Consensus 78 G~~VldlG~G~G~~~~~la~~VG-~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~-~p~~~~~~~~~vDvVf~d- 154 (233)
T 4df3_A 78 GDRILYLGIASGTTASHMSDIIG-PRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDAR-FPEKYRHLVEGVDGLYAD- 154 (233)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHC-TTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTT-CGGGGTTTCCCEEEEEEC-
T ss_pred CCEEEEecCcCCHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEecc-CccccccccceEEEEEEe-
Confidence 457999999999999999864 0 0113788899999998776542 222 322322 222233 889988763
Q ss_pred ccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 541 VFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 541 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
+.+.. +.+.+|.|+.|+|||||.++|.+
T Consensus 155 -~~~~~---~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 155 -VAQPE---QAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp -CCCTT---HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -ccCCh---hHHHHHHHHHHhccCCCEEEEEE
Confidence 22222 44679999999999999999973
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=1.4e-06 Score=94.97 Aligned_cols=111 Identities=14% Similarity=0.134 Sum_probs=75.4
Q ss_pred HHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEccccc----
Q 006905 196 AYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAER---- 268 (626)
Q Consensus 196 ~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~---- 268 (626)
..++.+.+.+... .+.+|||+|||+|.++..|++. .|+++|+++..+..+.. .+...++ .+.+..+|...
T Consensus 273 ~l~~~~~~~l~~~--~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~-n~~~~~~~~v~f~~~d~~~~l~~ 349 (433)
T 1uwv_A 273 KMVARALEWLDVQ--PEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQ-NARLNGLQNVTFYHENLEEDVTK 349 (433)
T ss_dssp HHHHHHHHHHTCC--TTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHH-HHHHTTCCSEEEEECCTTSCCSS
T ss_pred HHHHHHHHhhcCC--CCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHH-HHHHcCCCceEEEECCHHHHhhh
Confidence 3444455555433 3458999999999999999986 68899998865554443 3344555 47788888655
Q ss_pred CCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 269 LPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 269 Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+++++++||+|+++... ... ..++..+. .++|++.++++..
T Consensus 350 ~~~~~~~fD~Vv~dPPr---~g~-~~~~~~l~-~~~p~~ivyvsc~ 390 (433)
T 1uwv_A 350 QPWAKNGFDKVLLDPAR---AGA-AGVMQQII-KLEPIRIVYVSCN 390 (433)
T ss_dssp SGGGTTCCSEEEECCCT---TCC-HHHHHHHH-HHCCSEEEEEESC
T ss_pred hhhhcCCCCEEEECCCC---ccH-HHHHHHHH-hcCCCeEEEEECC
Confidence 44667789999997643 221 34555444 4799999999854
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=4.6e-07 Score=91.21 Aligned_cols=94 Identities=10% Similarity=0.102 Sum_probs=69.2
Q ss_pred ceeEEeccCchhhHhhhhhCC---CeEEEEeccCccCcccHHHHHHh----cc---cceec-cccccCCCC------CCc
Q 006905 470 YRNILDMNAHLGGFAAALIDF---PVWVMNVVPAEAKINTLGVIYER----GL---VGTYT-NWCEAMSTY------PRT 532 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~---~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~-~~~e~~~~y------p~t 532 (626)
-++|||+|||.|..+..|++. +. .|+.+|.++.++.++.++ |+ |.+++ |..+.+..+ +.+
T Consensus 80 ~~~VLeiG~G~G~~~~~la~~~~~~~---~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 156 (247)
T 1sui_A 80 AKNTMEIGVYTGYSLLATALAIPEDG---KILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 156 (247)
T ss_dssp CCEEEEECCGGGHHHHHHHHHSCTTC---EEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred cCEEEEeCCCcCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence 458999999999999998764 33 688999998999887764 44 33333 222222223 478
Q ss_pred cceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 533 YDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 533 ~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
||+|.++.. .-+...++.++.|+|||||.+++.+
T Consensus 157 fD~V~~d~~------~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 157 YDFIFVDAD------KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp BSEEEECSC------STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEEEEcCc------hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 999988532 2356889999999999999999864
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=1.4e-07 Score=99.60 Aligned_cols=97 Identities=12% Similarity=0.179 Sum_probs=71.2
Q ss_pred CceeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHHHhcccceeccccccCCCCCCccceeeeccccccCC
Q 006905 469 RYRNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYPRTYDLIHADSVFSLYK 546 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~yp~t~Dlih~~~~f~~~~ 546 (626)
...+|||+|||.|.++.+|+++ ++ .++.+|. +.+++.+.+..-+.... ...+.++|. ||+|.+..++.++.
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~-~~~~~~a~~~~~v~~~~--~d~~~~~p~-~D~v~~~~~lh~~~ 260 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKL---KCIVFDR-PQVVENLSGSNNLTYVG--GDMFTSIPN-ADAVLLKYILHNWT 260 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTC---EEEEEEC-HHHHTTCCCBTTEEEEE--CCTTTCCCC-CSEEEEESCGGGSC
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCC---eEEEeeC-HHHHhhcccCCCcEEEe--ccccCCCCC-ccEEEeehhhccCC
Confidence 3578999999999999999865 33 5777887 57777665432133322 112234565 99999999999886
Q ss_pred CCCCHHHHHHHhhhhccC---CcEEEEEcC
Q 006905 547 DRCETEDILLEMDRILRP---EGGVIFRDD 573 (626)
Q Consensus 547 ~~c~~~~~l~E~dRiLRP---gG~~i~~d~ 573 (626)
+. ....+|.++.|+||| ||+++|.|.
T Consensus 261 d~-~~~~~l~~~~~~L~p~~~gG~l~i~e~ 289 (352)
T 1fp2_A 261 DK-DCLRILKKCKEAVTNDGKRGKVTIIDM 289 (352)
T ss_dssp HH-HHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred HH-HHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 43 234899999999999 999999753
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=1.5e-06 Score=89.47 Aligned_cols=124 Identities=10% Similarity=0.065 Sum_probs=82.8
Q ss_pred CCceecCCCCCCCCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHH
Q 006905 178 GDRFRFPGGGTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALE 254 (626)
Q Consensus 178 ge~~~Fp~ggt~F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~e 254 (626)
|-.|.+.-...+|..+-..--.++.+++ .+ +.+|||+|||+|.++..++.+ .|+++|+++..+. ...+.++.
T Consensus 96 G~~~~~D~~k~~f~~~~~~er~ri~~~~--~~--g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~-~~~~N~~~ 170 (278)
T 3k6r_A 96 GIKYKLDVAKIMFSPANVKERVRMAKVA--KP--DELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFK-FLVENIHL 170 (278)
T ss_dssp TEEEEEETTTSCCCGGGHHHHHHHHHHC--CT--TCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHH-HHHHHHHH
T ss_pred CEEEEEeccceEEcCCcHHHHHHHHHhc--CC--CCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHH-HHHHHHHH
Confidence 3334443334556555554444555554 23 459999999999999888765 5889999885443 33444555
Q ss_pred cCCC--eEEEEcccccCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEE
Q 006905 255 RGVP--ALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 255 rg~~--~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
+++. +.+..+|+..++ ..+.||.|+++... ....+|..+.++|||||.+.+.
T Consensus 171 N~v~~~v~~~~~D~~~~~-~~~~~D~Vi~~~p~-----~~~~~l~~a~~~lk~gG~ih~~ 224 (278)
T 3k6r_A 171 NKVEDRMSAYNMDNRDFP-GENIADRILMGYVV-----RTHEFIPKALSIAKDGAIIHYH 224 (278)
T ss_dssp TTCTTTEEEECSCTTTCC-CCSCEEEEEECCCS-----SGGGGHHHHHHHEEEEEEEEEE
T ss_pred cCCCCcEEEEeCcHHHhc-cccCCCEEEECCCC-----cHHHHHHHHHHHcCCCCEEEEE
Confidence 6654 566667776665 35789999986532 2246788899999999998764
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.38 E-value=4.5e-07 Score=97.39 Aligned_cols=103 Identities=14% Similarity=-0.018 Sum_probs=74.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCCC----CCCCeeEEEe
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLPY----PSRAFDMAHC 281 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lpf----~d~sFDlV~~ 281 (626)
.+.+|||+|||+|.++..++.. .|+++|+++..+..+.. .+..+++ .+.+..+|+..+.. .+++||+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~-n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKE-NAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHH-HHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 3568999999999999999886 58899998865554443 3444565 46777777654321 2568999999
Q ss_pred ccccccc--------cccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 282 SRCLIPW--------NQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 282 ~~~l~h~--------~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
....... ......++.++.++|+|||.++++..
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 336 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC 336 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 6533111 12236789999999999999999865
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=5e-07 Score=91.86 Aligned_cols=99 Identities=14% Similarity=0.000 Sum_probs=73.6
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIP 287 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h 287 (626)
..+|||||||.|.++..++.. .++++|+++.++.-.. +++...|++..+.+.|...-+ +.+.||+|+++-++++
T Consensus 133 p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~-~~l~~~g~~~~~~v~D~~~~~-p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 133 PNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVD-EALTRLNVPHRTNVADLLEDR-LDEPADVTLLLKTLPC 210 (281)
T ss_dssp CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHH-HHHHHTTCCEEEEECCTTTSC-CCSCCSEEEETTCHHH
T ss_pred CceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHH-HHHHhcCCCceEEEeeecccC-CCCCcchHHHHHHHHH
Confidence 669999999999999888665 7899999776554333 333455788788777754444 4578999999999977
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEE
Q 006905 288 WNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 288 ~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
..+.....+.++...|+|+|.+|--
T Consensus 211 Le~q~kg~g~~ll~aL~~~~vvVSf 235 (281)
T 3lcv_B 211 LETQQRGSGWEVIDIVNSPNIVVTF 235 (281)
T ss_dssp HHHHSTTHHHHHHHHSSCSEEEEEE
T ss_pred hhhhhhHHHHHHHHHhCCCCEEEec
Confidence 6554433444999999999988754
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=6.3e-07 Score=91.97 Aligned_cols=138 Identities=18% Similarity=0.126 Sum_probs=87.4
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh-----cc-----------cceec-cccccCCCCCCc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER-----GL-----------VGTYT-NWCEAMSTYPRT 532 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r-----gl-----------i~~~~-~~~e~~~~yp~t 532 (626)
-++|||+|||.|+++..+++.+. .+|+.+|.++.+++.+.++ |+ +.+++ |-.+-+.. +++
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~--~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~ 152 (281)
T 1mjf_A 76 PKRVLVIGGGDGGTVREVLQHDV--DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRG 152 (281)
T ss_dssp CCEEEEEECTTSHHHHHHTTSCC--SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCC
T ss_pred CCeEEEEcCCcCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCC
Confidence 46899999999999999998853 4789999998999988876 32 12222 11111112 689
Q ss_pred cceeeeccccccCCCCCC--HHHHHHHhhhhccCCcEEEEEc-----ChHHHHHHHHHHHhCCCeeEEeec--CCCCCCc
Q 006905 533 YDLIHADSVFSLYKDRCE--TEDILLEMDRILRPEGGVIFRD-----DVDELVKVKRIIDALKWQSQIVDH--EDGPLER 603 (626)
Q Consensus 533 ~Dlih~~~~f~~~~~~c~--~~~~l~E~dRiLRPgG~~i~~d-----~~~~~~~~~~~~~~l~w~~~~~~~--e~~~~~~ 603 (626)
||+|.++.... ....-. ...++.++.|+|||||.+++.. ..+.+..+.+.++..--.+..... ..+ .+.
T Consensus 153 fD~Ii~d~~~~-~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~-~g~ 230 (281)
T 1mjf_A 153 FDVIIADSTDP-VGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSFPVIGY-ASP 230 (281)
T ss_dssp EEEEEEECCCC-C-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEEEEEECCTTS-SSS
T ss_pred eeEEEECCCCC-CCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCceEEEEEecCCC-Cce
Confidence 99999865432 111111 2678999999999999999962 234445555544444333333221 111 234
Q ss_pred ceEEEEEec
Q 006905 604 EKLLFAVKL 612 (626)
Q Consensus 604 e~~l~~~K~ 612 (626)
..+++|.|.
T Consensus 231 ~~~~~as~~ 239 (281)
T 1mjf_A 231 WAFLVGVKG 239 (281)
T ss_dssp EEEEEEEES
T ss_pred EEEEEeeCC
Confidence 678899886
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.37 E-value=8.5e-07 Score=90.11 Aligned_cols=108 Identities=15% Similarity=0.146 Sum_probs=80.4
Q ss_pred ceeEEeccCchhhHhhhhhCC---CeEEEEeccCccCcccHHHHHHh----cc---cceec-cccccCCCCC-Cccceee
Q 006905 470 YRNILDMNAHLGGFAAALIDF---PVWVMNVVPAEAKINTLGVIYER----GL---VGTYT-NWCEAMSTYP-RTYDLIH 537 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~---~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~-~~~e~~~~yp-~t~Dlih 537 (626)
-.+|||+|||.|.++..|++. .. +|+.+|.++.+++.+.++ |+ +...+ |..+. +| .+||+|.
T Consensus 113 ~~~VLDiG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~D~V~ 186 (277)
T 1o54_A 113 GDRIIDTGVGSGAMCAVLARAVGSSG---KVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG---FDEKDVDALF 186 (277)
T ss_dssp TCEEEEECCTTSHHHHHHHHHTTTTC---EEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC---CSCCSEEEEE
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCc---EEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc---ccCCccCEEE
Confidence 458999999999999999875 33 788999998999988776 43 23333 33332 45 7899998
Q ss_pred eccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh-HHHHHHHHHHHhCCCee
Q 006905 538 ADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV-DELVKVKRIIDALKWQS 591 (626)
Q Consensus 538 ~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~-~~~~~~~~~~~~l~w~~ 591 (626)
++ --+...+|.++.|+|||||.+++.+.. +.+.++.+.++...|..
T Consensus 187 ~~--------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~~ 233 (277)
T 1o54_A 187 LD--------VPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIR 233 (277)
T ss_dssp EC--------CSCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEE
T ss_pred EC--------CcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCce
Confidence 83 123357899999999999999998764 46667777777666653
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.8e-07 Score=99.40 Aligned_cols=99 Identities=13% Similarity=0.177 Sum_probs=70.3
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceeccccccCCCCCCccceeeeccccccCCC
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYPRTYDLIHADSVFSLYKD 547 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~yp~t~Dlih~~~~f~~~~~ 547 (626)
....+|||+|||.|.++.+|+++.- -..++.+|. +.+++.+.+..-+..... ..+..+|. ||+|.+..++.++.+
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~~~v~~~~~--d~~~~~~~-~D~v~~~~~lh~~~d 282 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELIISKYP-LIKGINFDL-PQVIENAPPLSGIEHVGG--DMFASVPQ-GDAMILKAVCHNWSD 282 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCCCTTEEEEEC--CTTTCCCC-EEEEEEESSGGGSCH
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCC-CCeEEEeCh-HHHHHhhhhcCCCEEEeC--CcccCCCC-CCEEEEecccccCCH
Confidence 4467899999999999999987521 125666777 477766554221232221 12234566 999999999988864
Q ss_pred CCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 548 RCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 548 ~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
. ....+|.++.|+|||||.++|.|
T Consensus 283 ~-~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 283 E-KCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp H-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred H-HHHHHHHHHHHhcCCCCEEEEEE
Confidence 3 23489999999999999999974
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.36 E-value=1.3e-06 Score=89.43 Aligned_cols=143 Identities=14% Similarity=0.151 Sum_probs=90.9
Q ss_pred CceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHh------cc----cceec-cccccCCCCCCcccee
Q 006905 469 RYRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYER------GL----VGTYT-NWCEAMSTYPRTYDLI 536 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~r------gl----i~~~~-~~~e~~~~yp~t~Dli 536 (626)
.-++|||+|||.|+++.++++. ++ ..|+.+|.++.+++++.++ ++ +.+++ |-.+-+...+++||+|
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~I 152 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSV--KKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI 152 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTC--SEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCC--ceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEE
Confidence 3578999999999999999987 44 3788888888899988875 22 22333 1111112235899999
Q ss_pred eeccccccCCC-CCCHHHHHHHhhhhccCCcEEEEEcC-----hHHHHHHHHHHHhCCCeeEEeecC--CCCCCcceEEE
Q 006905 537 HADSVFSLYKD-RCETEDILLEMDRILRPEGGVIFRDD-----VDELVKVKRIIDALKWQSQIVDHE--DGPLEREKLLF 608 (626)
Q Consensus 537 h~~~~f~~~~~-~c~~~~~l~E~dRiLRPgG~~i~~d~-----~~~~~~~~~~~~~l~w~~~~~~~e--~~~~~~e~~l~ 608 (626)
.++........ .-....++.++.|+|+|||.+++... .+....+.+.+++.=-.+...... .-+.+...+++
T Consensus 153 i~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~~~~ 232 (275)
T 1iy9_A 153 MVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTFTI 232 (275)
T ss_dssp EESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGCEEEEE
T ss_pred EECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEEEEecCcccCcceEEEE
Confidence 99654322111 11125789999999999999999732 334555555555553344433221 11123467889
Q ss_pred EEecc
Q 006905 609 AVKLY 613 (626)
Q Consensus 609 ~~K~~ 613 (626)
|.|++
T Consensus 233 ask~~ 237 (275)
T 1iy9_A 233 GSKKY 237 (275)
T ss_dssp EESSC
T ss_pred eeCCC
Confidence 99874
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.36 E-value=8.5e-07 Score=87.72 Aligned_cols=104 Identities=17% Similarity=0.189 Sum_probs=76.5
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc----c---cceec-cccccCCCC-C-Cccceeeec
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG----L---VGTYT-NWCEAMSTY-P-RTYDLIHAD 539 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg----l---i~~~~-~~~e~~~~y-p-~t~Dlih~~ 539 (626)
-.+|||+|||.|.++..|++.+. +|+.+|.++.+++.+.++. + +...+ |..+ .. + +.||+|.++
T Consensus 92 ~~~vldiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~D~v~~~ 165 (248)
T 2yvl_A 92 EKRVLEFGTGSGALLAVLSEVAG---EVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKD---AEVPEGIFHAAFVD 165 (248)
T ss_dssp TCEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTT---SCCCTTCBSEEEEC
T ss_pred CCEEEEeCCCccHHHHHHHHhCC---EEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhh---cccCCCcccEEEEC
Confidence 45899999999999999988743 7899999989999888763 3 22332 2222 22 4 789999872
Q ss_pred cccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC-hHHHHHHHHHHHhC
Q 006905 540 SVFSLYKDRCETEDILLEMDRILRPEGGVIFRDD-VDELVKVKRIIDAL 587 (626)
Q Consensus 540 ~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~-~~~~~~~~~~~~~l 587 (626)
--+...+|.++.|+|||||.+++... .+...++.+.++..
T Consensus 166 --------~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~ 206 (248)
T 2yvl_A 166 --------VREPWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENY 206 (248)
T ss_dssp --------SSCGGGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTTT
T ss_pred --------CcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh
Confidence 22446789999999999999999877 44556666655544
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=2.5e-07 Score=94.99 Aligned_cols=119 Identities=20% Similarity=0.302 Sum_probs=81.2
Q ss_pred chhhhHHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhh----HhhhhhCC-C----eEEEEeccCccCcccHHHHHHh
Q 006905 443 FQQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGG----FAAALIDF-P----VWVMNVVPAEAKINTLGVIYER 513 (626)
Q Consensus 443 f~~d~~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~----faa~l~~~-~----v~~mnv~~~~~~~~~l~~~~~r 513 (626)
|-.|...|..-.+. +++. . . -..|+|+|||+|- +|..|++. + -| .|+++|.++++|+.|.+.
T Consensus 86 FfRd~~~f~~l~~~---llp~--~-~-~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~--~I~atDis~~~L~~Ar~~ 156 (274)
T 1af7_A 86 FFREAHHFPILAEH---ARRR--H-G-EYRVWSAAASTGEEPYSIAITLADALGMAPGRW--KVFASDIDTEVLEKARSG 156 (274)
T ss_dssp TTTTTTHHHHHHHH---HHHS--C-S-CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSE--EEEEEESCHHHHHHHHHT
T ss_pred ccCChHHHHHHHHH---ccCC--C-C-CcEEEEeeccCChhHHHHHHHHHHhcccCCCCe--EEEEEECCHHHHHHHHhc
Confidence 54555566543322 2332 1 2 3469999999997 66666543 2 13 899999999999998864
Q ss_pred cc-------------------------------------cc-eeccccccCCCCC--CccceeeeccccccCCCCCCHHH
Q 006905 514 GL-------------------------------------VG-TYTNWCEAMSTYP--RTYDLIHADSVFSLYKDRCETED 553 (626)
Q Consensus 514 gl-------------------------------------i~-~~~~~~e~~~~yp--~t~Dlih~~~~f~~~~~~c~~~~ 553 (626)
-. |. ..||+.+ .+|| ..||+|.|..++.+... -....
T Consensus 157 ~y~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl~~--~~~~~~~~fDlI~crnvliyf~~-~~~~~ 233 (274)
T 1af7_A 157 IYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLE--KQYNVPGPFDAIFCRNVMIYFDK-TTQED 233 (274)
T ss_dssp EEEGGGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTC--SSCCCCCCEEEEEECSSGGGSCH-HHHHH
T ss_pred CCchhhhhcCCHHHHHHHhhccccCCCCceeechhhcccCeEEecccCC--CCCCcCCCeeEEEECCchHhCCH-HHHHH
Confidence 20 11 1234444 1344 78999999999887753 24478
Q ss_pred HHHHhhhhccCCcEEEEEcC
Q 006905 554 ILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 554 ~l~E~dRiLRPgG~~i~~d~ 573 (626)
++.++.+.|||||++++...
T Consensus 234 vl~~~~~~L~pgG~L~lg~s 253 (274)
T 1af7_A 234 ILRRFVPLLKPDGLLFAGHS 253 (274)
T ss_dssp HHHHHGGGEEEEEEEEECTT
T ss_pred HHHHHHHHhCCCcEEEEEec
Confidence 99999999999999999644
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.34 E-value=6.4e-07 Score=91.74 Aligned_cols=120 Identities=9% Similarity=0.114 Sum_probs=82.5
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCcc-CcccHHHHHHhc---------c-------ccee-ccccccCCCC--
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEA-KINTLGVIYERG---------L-------VGTY-TNWCEAMSTY-- 529 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~-~~~~l~~~~~rg---------l-------i~~~-~~~~e~~~~y-- 529 (626)
-.+|||+|||+|.++..|+..+. ..|+.+|. ++.++..+.++. + +.+. .+|.+.....
T Consensus 80 ~~~vLDlG~G~G~~~~~~a~~~~--~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 157 (281)
T 3bzb_A 80 GKTVCELGAGAGLVSIVAFLAGA--DQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR 157 (281)
T ss_dssp TCEEEETTCTTSHHHHHHHHTTC--SEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred CCeEEEecccccHHHHHHHHcCC--CEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence 35799999999999999988764 26899999 788998877653 1 2222 3576544333
Q ss_pred ---CCccceeeeccccccCCCCCCHHHHHHHhhhhcc---C--CcEEEEE-cC-h----HHHHHHHHHHHhCC-CeeEEe
Q 006905 530 ---PRTYDLIHADSVFSLYKDRCETEDILLEMDRILR---P--EGGVIFR-DD-V----DELVKVKRIIDALK-WQSQIV 594 (626)
Q Consensus 530 ---p~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLR---P--gG~~i~~-d~-~----~~~~~~~~~~~~l~-w~~~~~ 594 (626)
+.+||+|.+..++.+.. +.+.+|.++.|+|+ | ||.+++. .. . +...++.+.++... |++...
T Consensus 158 ~~~~~~fD~Ii~~dvl~~~~---~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~~~~~~~~~l~~~G~f~v~~~ 234 (281)
T 3bzb_A 158 CTGLQRFQVVLLADLLSFHQ---AHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGALIAEPW 234 (281)
T ss_dssp HHSCSSBSEEEEESCCSCGG---GHHHHHHHHHHHBCCTTTCTTCEEEEEECC--------CTHHHHHHHHSTTEEEEEE
T ss_pred hccCCCCCEEEEeCcccChH---HHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccchhHHHHHHHHHhcCCEEEEEe
Confidence 37999999877766543 46889999999999 9 9976553 22 1 11334445556666 666543
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.34 E-value=4.6e-06 Score=80.31 Aligned_cols=117 Identities=11% Similarity=0.091 Sum_probs=87.4
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-----cceeccccccCCCCCCccceeeecccccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-----VGTYTNWCEAMSTYPRTYDLIHADSVFSL 544 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-----i~~~~~~~e~~~~yp~t~Dlih~~~~f~~ 544 (626)
-.+|||+|||.|.++.+|++.+. -+|+.+|.++.+++.+.++-- +.+++ ..+..+|.+||+|.++..|..
T Consensus 50 ~~~vlD~g~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~---~d~~~~~~~~D~v~~~~p~~~ 124 (207)
T 1wy7_A 50 GKVVADLGAGTGVLSYGALLLGA--KEVICVEVDKEAVDVLIENLGEFKGKFKVFI---GDVSEFNSRVDIVIMNPPFGS 124 (207)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHTGGGTTSEEEEE---SCGGGCCCCCSEEEECCCCSS
T ss_pred cCEEEEeeCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCEEEEE---CchHHcCCCCCEEEEcCCCcc
Confidence 45899999999999999998853 268999999999998887632 23333 444556789999999988876
Q ss_pred CCCCCCHHHHHHHhhhhccCCcEEEEE-cChHHHHHHHHHHHhCCCeeEEe
Q 006905 545 YKDRCETEDILLEMDRILRPEGGVIFR-DDVDELVKVKRIIDALKWQSQIV 594 (626)
Q Consensus 545 ~~~~c~~~~~l~E~dRiLRPgG~~i~~-d~~~~~~~~~~~~~~l~w~~~~~ 594 (626)
.... ....+|.++.|+| ||.+++. ...+....+.+++....|++...
T Consensus 125 ~~~~-~~~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 172 (207)
T 1wy7_A 125 QRKH-ADRPFLLKAFEIS--DVVYSIHLAKPEVRRFIEKFSWEHGFVVTHR 172 (207)
T ss_dssp SSTT-TTHHHHHHHHHHC--SEEEEEEECCHHHHHHHHHHHHHTTEEEEEE
T ss_pred ccCC-chHHHHHHHHHhc--CcEEEEEeCCcCCHHHHHHHHHHCCCeEEEE
Confidence 6543 3367889999999 6655444 26667778888888888877643
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=2.8e-07 Score=96.03 Aligned_cols=93 Identities=17% Similarity=0.025 Sum_probs=68.8
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceeccccccCCC-C--CCccceeeecc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYTNWCEAMST-Y--PRTYDLIHADS 540 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~~~~e~~~~-y--p~t~Dlih~~~ 540 (626)
-.+|||+|||.|.++..|++...-..+|+.+|.++++++.+.++ |+ +.+.+ ..+.. . ..+||+|.+..
T Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~---~d~~~~~~~~~~fD~Iv~~~ 152 (317)
T 1dl5_A 76 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVC---GDGYYGVPEFSPYDVIFVTV 152 (317)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEE---SCGGGCCGGGCCEEEEEECS
T ss_pred cCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEE---CChhhccccCCCeEEEEEcC
Confidence 45899999999999999987522012588999999999988876 44 23332 22222 2 27899999998
Q ss_pred ccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh
Q 006905 541 VFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV 574 (626)
Q Consensus 541 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~ 574 (626)
++.+.. .++.|+|||||.+++....
T Consensus 153 ~~~~~~---------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 153 GVDEVP---------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp BBSCCC---------HHHHHHEEEEEEEEEEBCB
T ss_pred CHHHHH---------HHHHHhcCCCcEEEEEECC
Confidence 887654 5788999999999997543
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.33 E-value=4e-07 Score=99.98 Aligned_cols=110 Identities=17% Similarity=0.138 Sum_probs=73.2
Q ss_pred HHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEcccccCC-CCCC
Q 006905 202 GKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAERLP-YPSR 274 (626)
Q Consensus 202 ~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~~Lp-f~d~ 274 (626)
..++...+ +.+|||+|||+|..+..|++. .|+++|+++..+.... +.+...|+. +.+...|...++ +.++
T Consensus 98 ~~~L~~~~--g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~-~n~~r~g~~nv~v~~~Da~~l~~~~~~ 174 (456)
T 3m4x_A 98 GTAAAAKP--GEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILS-ENIERWGVSNAIVTNHAPAELVPHFSG 174 (456)
T ss_dssp HHHHCCCT--TCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHH-HHHHHHTCSSEEEECCCHHHHHHHHTT
T ss_pred HHHcCCCC--CCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCceEEEeCCHHHhhhhccc
Confidence 34444333 559999999999998888864 4889999875554333 334444654 556666665554 3357
Q ss_pred CeeEEEeccc------ccc-------ccc--------cHHHHHHHHHhcccCCeEEEEEeC
Q 006905 275 AFDMAHCSRC------LIP-------WNQ--------FGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 275 sFDlV~~~~~------l~h-------~~~--------~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+||+|++... +.. |.. ....+|.++.++|||||.|++++-
T Consensus 175 ~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 235 (456)
T 3m4x_A 175 FFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTC 235 (456)
T ss_dssp CEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEES
T ss_pred cCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 8999997432 100 111 112789999999999999999864
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.1e-06 Score=90.86 Aligned_cols=142 Identities=15% Similarity=0.069 Sum_probs=87.3
Q ss_pred ceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhc------c----cceec-cccccCCCCCCccceee
Q 006905 470 YRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERG------L----VGTYT-NWCEAMSTYPRTYDLIH 537 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rg------l----i~~~~-~~~e~~~~yp~t~Dlih 537 (626)
-.+|||+|||.|+++..+++. ++ .+|+.+|.++.+++++.++- + +.+++ |..+.+...+++||+|.
T Consensus 91 ~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 91 PKKVLIIGGGDGGTLREVLKHDSV--EKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp CCEEEEEECTTCHHHHHHTTSTTC--SEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHhcCCC--CEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 478999999999999999987 43 37889999989999887752 2 22232 21111222358899999
Q ss_pred eccccccCCC--CCCHHHHHHHhhhhccCCcEEEEEcC-----hHHHHHHHHHHHhCCCeeEEeecC--CCCCCcceEEE
Q 006905 538 ADSVFSLYKD--RCETEDILLEMDRILRPEGGVIFRDD-----VDELVKVKRIIDALKWQSQIVDHE--DGPLEREKLLF 608 (626)
Q Consensus 538 ~~~~f~~~~~--~c~~~~~l~E~dRiLRPgG~~i~~d~-----~~~~~~~~~~~~~l~w~~~~~~~e--~~~~~~e~~l~ 608 (626)
++..-..... .-....++.++.|+|||||.+++.-. .+....+.+.+++.--.+...... .-|.+...+++
T Consensus 169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~p~g~~~f~~ 248 (296)
T 1inl_A 169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWSYTF 248 (296)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEEECTTSTTSEEEEEE
T ss_pred EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHCCceEEEEeecCccCCCceEEEE
Confidence 8532210111 00126789999999999999999621 233444444444433344433211 11224567889
Q ss_pred EEecc
Q 006905 609 AVKLY 613 (626)
Q Consensus 609 ~~K~~ 613 (626)
|.|++
T Consensus 249 as~~~ 253 (296)
T 1inl_A 249 ASKGI 253 (296)
T ss_dssp EESSC
T ss_pred ecCCC
Confidence 99974
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.32 E-value=1.8e-06 Score=83.04 Aligned_cols=113 Identities=11% Similarity=0.008 Sum_probs=78.2
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-cceeccccccCCCCCCccceeeeccccccCCCC
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-VGTYTNWCEAMSTYPRTYDLIHADSVFSLYKDR 548 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-i~~~~~~~e~~~~yp~t~Dlih~~~~f~~~~~~ 548 (626)
-.+|||+|||.|.++.+|++.+. ..|+.+|.++.+++.+.++-- +.+++ ..+..+|.+||+|.++..|.+....
T Consensus 52 ~~~vlD~gcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~---~d~~~~~~~~D~v~~~~p~~~~~~~ 126 (200)
T 1ne2_A 52 GRSVIDAGTGNGILACGSYLLGA--ESVTAFDIDPDAIETAKRNCGGVNFMV---ADVSEISGKYDTWIMNPPFGSVVKH 126 (200)
T ss_dssp TSEEEEETCTTCHHHHHHHHTTB--SEEEEEESCHHHHHHHHHHCTTSEEEE---CCGGGCCCCEEEEEECCCC------
T ss_pred CCEEEEEeCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHhcCCCEEEE---CcHHHCCCCeeEEEECCCchhccCc
Confidence 46899999999999999988854 268999999999999988742 23333 3344467899999999999877653
Q ss_pred CCHHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHhCCCeeE
Q 006905 549 CETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 549 c~~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~l~w~~~ 592 (626)
.. ..++.++-|+| |+.+++. .......+.+++.... ++.
T Consensus 127 ~~-~~~l~~~~~~~--g~~~~~~-~~~~~~~~~~~~~~~g-~~~ 165 (200)
T 1ne2_A 127 SD-RAFIDKAFETS--MWIYSIG-NAKARDFLRREFSARG-DVF 165 (200)
T ss_dssp -C-HHHHHHHHHHE--EEEEEEE-EGGGHHHHHHHHHHHE-EEE
T ss_pred hh-HHHHHHHHHhc--CcEEEEE-cCchHHHHHHHHHHCC-CEE
Confidence 22 57889999998 5544444 4455667777766665 444
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.32 E-value=1.2e-06 Score=91.44 Aligned_cols=119 Identities=15% Similarity=0.142 Sum_probs=78.4
Q ss_pred ceeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHHHh----cc--cceeccccccCCCCCCccceeeeccc
Q 006905 470 YRNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIYER----GL--VGTYTNWCEAMSTYPRTYDLIHADSV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~~~~e~~~~yp~t~Dlih~~~~ 541 (626)
-.+|||+|||.|+++..|++. +- ..|+.+|.++.++..+.++ |+ +.+++.=.+.+..++.+||+|.++--
T Consensus 119 g~~VLDlg~G~G~~t~~la~~~~~~--~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~P 196 (315)
T 1ixk_A 119 GEIVADMAAAPGGKTSYLAQLMRND--GVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAP 196 (315)
T ss_dssp TCEEEECCSSCSHHHHHHHHHTTTC--SEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEECC
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCC--CEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeCC
Confidence 457999999999999999863 11 1588999998999888776 44 23333212233334578999998543
Q ss_pred cccCC---CCC------C----------HHHHHHHhhhhccCCcEEEEEc----ChHHHHHHHHHHHhCCCe
Q 006905 542 FSLYK---DRC------E----------TEDILLEMDRILRPEGGVIFRD----DVDELVKVKRIIDALKWQ 590 (626)
Q Consensus 542 f~~~~---~~c------~----------~~~~l~E~dRiLRPgG~~i~~d----~~~~~~~~~~~~~~l~w~ 590 (626)
.+... ..- . ...+|.++.|+|||||.++++. ..+....++.+++...++
T Consensus 197 csg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~~~~ 268 (315)
T 1ixk_A 197 CTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVE 268 (315)
T ss_dssp TTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEE
T ss_pred CCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcCCCE
Confidence 32111 000 0 1478999999999999999963 223444566777766544
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.32 E-value=1.1e-06 Score=88.97 Aligned_cols=108 Identities=17% Similarity=0.233 Sum_probs=76.3
Q ss_pred ceeEEeccCchhhHhhhhhCC---CeEEEEeccCccCcccHHHHHHh-----c-c---cceec-cccccCCCCC-Cccce
Q 006905 470 YRNILDMNAHLGGFAAALIDF---PVWVMNVVPAEAKINTLGVIYER-----G-L---VGTYT-NWCEAMSTYP-RTYDL 535 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~---~v~~mnv~~~~~~~~~l~~~~~r-----g-l---i~~~~-~~~e~~~~yp-~t~Dl 535 (626)
-.+|||+|||.|.++.+|++. +. +|+.+|.++.+++.+.++ | + +.+.+ |..+. .++ .+||+
T Consensus 100 ~~~vLdiG~G~G~~~~~l~~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~--~~~~~~~D~ 174 (280)
T 1i9g_A 100 GARVLEAGAGSGALTLSLLRAVGPAG---QVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS--ELPDGSVDR 174 (280)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC--CCCTTCEEE
T ss_pred CCEEEEEcccccHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc--CCCCCceeE
Confidence 457999999999999999874 33 788999998999988776 4 2 23333 22221 243 78999
Q ss_pred eeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC-hHHHHHHHHHHHh-CCCe
Q 006905 536 IHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDD-VDELVKVKRIIDA-LKWQ 590 (626)
Q Consensus 536 ih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~-~~~~~~~~~~~~~-l~w~ 590 (626)
|.++. -+...+|.++.|+|||||.+++... .+.+.++...+.. ..|.
T Consensus 175 v~~~~--------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~~f~ 223 (280)
T 1i9g_A 175 AVLDM--------LAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWT 223 (280)
T ss_dssp EEEES--------SCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBC
T ss_pred EEECC--------cCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcCCcC
Confidence 98821 2445789999999999999999764 3455555554444 5553
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.32 E-value=7.6e-07 Score=93.93 Aligned_cols=101 Identities=17% Similarity=0.184 Sum_probs=71.6
Q ss_pred CceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHh------cc----cceec-cccccCCCCC-Cccce
Q 006905 469 RYRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYER------GL----VGTYT-NWCEAMSTYP-RTYDL 535 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~r------gl----i~~~~-~~~e~~~~yp-~t~Dl 535 (626)
.-++|||+|||.|+++..|++. ++ .+|+.+|.++.+++++.++ |+ +.+++ |+.+.+..++ .+||+
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~~--~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDl 197 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHASI--EQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA 197 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTC--CEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCCEEEEECCCccHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccE
Confidence 3578999999999999999987 33 3789999999999988775 33 22333 3332223344 79999
Q ss_pred eeeccccccCCCCC-CHHHHHHHhhhhccCCcEEEEE
Q 006905 536 IHADSVFSLYKDRC-ETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 536 ih~~~~f~~~~~~c-~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
|.++..-....... ....++.++.|+|||||.+++.
T Consensus 198 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 198 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 99864321111110 1368999999999999999996
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.30 E-value=8.9e-07 Score=84.39 Aligned_cols=137 Identities=18% Similarity=0.157 Sum_probs=73.1
Q ss_pred ceeEEeccCchhhHhhhhhCC-CeE-------EEEeccCccCcccHHHHHHhccccee-c-ccccc-C-----CCCC-Cc
Q 006905 470 YRNILDMNAHLGGFAAALIDF-PVW-------VMNVVPAEAKINTLGVIYERGLVGTY-T-NWCEA-M-----STYP-RT 532 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~-~v~-------~mnv~~~~~~~~~l~~~~~rgli~~~-~-~~~e~-~-----~~yp-~t 532 (626)
-.+|||+|||.|.++..|++. +.- ...|+.+|.++.. .. + + +..+ + |..+. . ..++ ++
T Consensus 23 ~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-~~--~-~-~~~~~~~d~~~~~~~~~~~~~~~~~~ 97 (196)
T 2nyu_A 23 GLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-PL--E-G-ATFLCPADVTDPRTSQRILEVLPGRR 97 (196)
T ss_dssp TCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-CC--T-T-CEEECSCCTTSHHHHHHHHHHSGGGC
T ss_pred CCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-cC--C-C-CeEEEeccCCCHHHHHHHHHhcCCCC
Confidence 368999999999999999876 310 0167888887422 10 1 1 1222 1 11100 0 0134 68
Q ss_pred cceeeeccccccCCCC--------CCHHHHHHHhhhhccCCcEEEEEcCh-HHHHHHHHHHHhCCCeeEEeecC-CCCCC
Q 006905 533 YDLIHADSVFSLYKDR--------CETEDILLEMDRILRPEGGVIFRDDV-DELVKVKRIIDALKWQSQIVDHE-DGPLE 602 (626)
Q Consensus 533 ~Dlih~~~~f~~~~~~--------c~~~~~l~E~dRiLRPgG~~i~~d~~-~~~~~~~~~~~~l~w~~~~~~~e-~~~~~ 602 (626)
||+|.|+..+...... .....+|.++.|+|||||.+++.+-. +....+...++..--++.++... ..+..
T Consensus 98 fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~f~~v~~~~~~~~~~~~ 177 (196)
T 2nyu_A 98 ADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRKES 177 (196)
T ss_dssp EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGHHHHHHHHHHEEEEEEECCC------
T ss_pred CcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHHHHHHHHHHHhcceEEECCcccCccC
Confidence 9999997655432211 01146899999999999999998432 22334444444332222332211 11224
Q ss_pred cceEEEEEe
Q 006905 603 REKLLFAVK 611 (626)
Q Consensus 603 ~e~~l~~~K 611 (626)
.|..+++..
T Consensus 178 ~e~~~v~~g 186 (196)
T 2nyu_A 178 SEVYFLATQ 186 (196)
T ss_dssp --EEEEEEE
T ss_pred ceEEEEeee
Confidence 577777654
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=2.3e-07 Score=91.00 Aligned_cols=93 Identities=15% Similarity=0.124 Sum_probs=65.1
Q ss_pred ceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhcc-----------cceec-cccccCCCCCCcccee
Q 006905 470 YRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERGL-----------VGTYT-NWCEAMSTYPRTYDLI 536 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rgl-----------i~~~~-~~~e~~~~yp~t~Dli 536 (626)
-.+|||+|||.|.++..|++. +- ..+|+.+|.++.+++.+.++.- +.+.+ |..+. ..-+.+||+|
T Consensus 78 ~~~vLDiG~G~G~~~~~la~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~i 155 (226)
T 1i1n_A 78 GAKALDVGSGSGILTACFARMVGC-TGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG-YAEEAPYDAI 155 (226)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC-CGGGCCEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccC-cccCCCcCEE
Confidence 458999999999999999865 10 0168899999899988866521 22222 22211 1112789999
Q ss_pred eeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 537 HADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 537 h~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
++...+.+ ++.++.|+|||||.+++...
T Consensus 156 ~~~~~~~~---------~~~~~~~~LkpgG~lv~~~~ 183 (226)
T 1i1n_A 156 HVGAAAPV---------VPQALIDQLKPGGRLILPVG 183 (226)
T ss_dssp EECSBBSS---------CCHHHHHTEEEEEEEEEEES
T ss_pred EECCchHH---------HHHHHHHhcCCCcEEEEEEe
Confidence 99766632 45688999999999999754
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=5.6e-07 Score=95.71 Aligned_cols=98 Identities=14% Similarity=0.174 Sum_probs=71.4
Q ss_pred CCceeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHHHhcccceeccccccCCCCCCccceeeeccccccC
Q 006905 468 GRYRNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYPRTYDLIHADSVFSLY 545 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~yp~t~Dlih~~~~f~~~ 545 (626)
....+|||+|||.|.++..|+++ ++ .++.+|.+ .+++.+.++.-+..... ..|.++|.. |+|.+..+++++
T Consensus 200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~-~~~~~a~~~~~v~~~~~--D~~~~~p~~-D~v~~~~vlh~~ 272 (364)
T 3p9c_A 200 EGLGTLVDVGGGVGATVAAIAAHYPTI---KGVNFDLP-HVISEAPQFPGVTHVGG--DMFKEVPSG-DTILMKWILHDW 272 (364)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTC---EEEEEECH-HHHTTCCCCTTEEEEEC--CTTTCCCCC-SEEEEESCGGGS
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHCCCC---eEEEecCH-HHHHhhhhcCCeEEEeC--CcCCCCCCC-CEEEehHHhccC
Confidence 55789999999999999999874 33 45666773 66665554432333331 223356755 999999999988
Q ss_pred CCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 546 KDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 546 ~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
.+. +...+|.++.|+|||||+++|.|.
T Consensus 273 ~d~-~~~~~L~~~~~~L~pgG~l~i~e~ 299 (364)
T 3p9c_A 273 SDQ-HCATLLKNCYDALPAHGKVVLVQC 299 (364)
T ss_dssp CHH-HHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred CHH-HHHHHHHHHHHHcCCCCEEEEEEe
Confidence 643 456899999999999999999753
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.5e-06 Score=91.83 Aligned_cols=137 Identities=18% Similarity=0.127 Sum_probs=88.1
Q ss_pred CCceeEEeccCchhhHhhhhhCCC---eEEEEeccCccCcccHHHHHHh----cc--cceeccccccCCCCCCccceeee
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFP---VWVMNVVPAEAKINTLGVIYER----GL--VGTYTNWCEAMSTYPRTYDLIHA 538 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~---v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~~~~e~~~~yp~t~Dlih~ 538 (626)
..-..|||+|||+|+++..++... . +|+.+|.++.+++.+.++ |+ |.+.+.=.+.+......||+|.+
T Consensus 202 ~~~~~vLD~gcGsG~~~ie~a~~~~~~~---~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~ 278 (354)
T 3tma_A 202 RPGMRVLDPFTGSGTIALEAASTLGPTS---PVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILA 278 (354)
T ss_dssp CTTCCEEESSCTTSHHHHHHHHHHCTTS---CEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEE
T ss_pred CCCCEEEeCCCCcCHHHHHHHHhhCCCc---eEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEE
Confidence 345689999999999998887642 4 688999999999988765 43 33343212222222267999999
Q ss_pred ccccccCCC-CCC----HHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHhCCCeeEEe-ecCCCCCCcceEEEEEe
Q 006905 539 DSVFSLYKD-RCE----TEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQIV-DHEDGPLEREKLLFAVK 611 (626)
Q Consensus 539 ~~~f~~~~~-~c~----~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~l~w~~~~~-~~e~~~~~~e~~l~~~K 611 (626)
+--|..-.. .-. ...++.++.|+|||||.+++...... -++.+.+ ..|+.... ...+|... -.|++++|
T Consensus 279 npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~~--~~~~~~~-~g~~~~~~~~l~~g~l~-~~i~vl~r 353 (354)
T 3tma_A 279 NPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRPA--LLKRALP-PGFALRHARVVEQGGVY-PRVFVLEK 353 (354)
T ss_dssp CCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCHH--HHHHHCC-TTEEEEEEEECCBTTBC-CEEEEEEE
T ss_pred CCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCHH--HHHHHhh-cCcEEEEEEEEEeCCEE-EEEEEEEc
Confidence 776653211 111 25689999999999999998755432 2445555 77766422 22344433 45677665
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.8e-06 Score=92.57 Aligned_cols=108 Identities=16% Similarity=0.173 Sum_probs=76.0
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccC
Q 006905 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERL 269 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~L 269 (626)
....+.+.+.+.. ....+|||+|||+|.++..++++ .++++|+++..+..+ ..+.+...|....
T Consensus 25 ~~l~~~~~~~~~~--~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------~~~~~~~~D~~~~ 93 (421)
T 2ih2_A 25 PEVVDFMVSLAEA--PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFLLW 93 (421)
T ss_dssp HHHHHHHHHHCCC--CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGGGC
T ss_pred HHHHHHHHHhhcc--CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------CCCcEEeCChhhc
Confidence 4455666666643 22448999999999999998863 689999988654322 3456777776665
Q ss_pred CCCCCCeeEEEeccccccccc---------cH-------------------HHHHHHHHhcccCCeEEEEEeC
Q 006905 270 PYPSRAFDMAHCSRCLIPWNQ---------FG-------------------GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 270 pf~d~sFDlV~~~~~l~h~~~---------~~-------------------~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+ +.+.||+|+++..+..... +. ..++..+.++|+|||.+++..|
T Consensus 94 ~-~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p 165 (421)
T 2ih2_A 94 E-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 165 (421)
T ss_dssp C-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred C-ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 4 3468999999754422111 11 2568899999999999999876
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.29 E-value=2e-06 Score=92.01 Aligned_cols=102 Identities=19% Similarity=0.194 Sum_probs=69.6
Q ss_pred CCEEEEeCCCCchHHHHHhh-------------------CCcEEEeCCccchHHHHHHHHHHc--------------CCC
Q 006905 212 IRTAIDTGCGVASWGAYLLS-------------------RNIITMSFAPRDTHEAQVQFALER--------------GVP 258 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~-------------------~~V~avdis~~dls~a~i~~A~er--------------g~~ 258 (626)
.-+|+|+|||+|..+..+.. -.|...|+...|.+.-...+.... +.-
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 46899999999987776621 146677888888765544433210 011
Q ss_pred eEEEEcc-cccCCCCCCCeeEEEecccccccccc--------------------------------------HHHHHHHH
Q 006905 259 ALIGVLA-AERLPYPSRAFDMAHCSRCLIPWNQF--------------------------------------GGIYLIEV 299 (626)
Q Consensus 259 ~~~~v~d-~~~Lpf~d~sFDlV~~~~~l~h~~~~--------------------------------------~~~~L~Ei 299 (626)
....+.. ...-.||+++||+|+++.+| ||..+ ...+|+..
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aL-HWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r 211 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSL-HWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR 211 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCT-TBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEeccee-eeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223333 23345889999999999999 88652 23468889
Q ss_pred HhcccCCeEEEEEeC
Q 006905 300 DRVLRPGGYWILSGP 314 (626)
Q Consensus 300 ~RvLKPGG~lvis~p 314 (626)
.|.|+|||.++++..
T Consensus 212 a~eL~pGG~mvl~~~ 226 (374)
T 3b5i_A 212 AAEVKRGGAMFLVCL 226 (374)
T ss_dssp HHHEEEEEEEEEEEE
T ss_pred HHHhCCCCEEEEEEe
Confidence 999999999999854
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.28 E-value=1.8e-06 Score=90.35 Aligned_cols=141 Identities=13% Similarity=0.116 Sum_probs=83.4
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh------cc----cceec-cccccCCCCCCccceeee
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER------GL----VGTYT-NWCEAMSTYPRTYDLIHA 538 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r------gl----i~~~~-~~~e~~~~yp~t~Dlih~ 538 (626)
-++|||+|||.|+++..|++.. -..+|+.+|.++.+++++.++ |+ +.+++ |..+.+..-+++||+|.+
T Consensus 109 ~~~VLdIG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 187 (314)
T 2b2c_A 109 PKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 187 (314)
T ss_dssp CCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence 4789999999999999999872 124788999998999998876 22 22222 211111122489999998
Q ss_pred ccccccCC-CCCCH-HHHHHHhhhhccCCcEEEEEcC-----hHHHHHHHHHHHhCCCeeEEeec--CCCCCCcceEEEE
Q 006905 539 DSVFSLYK-DRCET-EDILLEMDRILRPEGGVIFRDD-----VDELVKVKRIIDALKWQSQIVDH--EDGPLEREKLLFA 609 (626)
Q Consensus 539 ~~~f~~~~-~~c~~-~~~l~E~dRiLRPgG~~i~~d~-----~~~~~~~~~~~~~l~w~~~~~~~--e~~~~~~e~~l~~ 609 (626)
+.. .... ..-.. ..++.++.|+|||||.+++... .+....+.+.++.+-=.+..... ...+.+.-.+++|
T Consensus 188 d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~vF~~v~~~~~~iP~~~~g~~g~~~a 266 (314)
T 2b2c_A 188 DSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQSIVSTYPSGSMGYLIC 266 (314)
T ss_dssp CCC--------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEEEE
T ss_pred cCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHHHCCcceEEEEEecCcCCCceEEEEE
Confidence 543 2221 11112 6789999999999999999641 23344444444444333433221 1111112258888
Q ss_pred Eec
Q 006905 610 VKL 612 (626)
Q Consensus 610 ~K~ 612 (626)
.|.
T Consensus 267 sk~ 269 (314)
T 2b2c_A 267 AKN 269 (314)
T ss_dssp ESS
T ss_pred eCC
Confidence 886
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.28 E-value=8.8e-07 Score=88.35 Aligned_cols=94 Identities=9% Similarity=0.076 Sum_probs=68.5
Q ss_pred ceeEEeccCchhhHhhhhhCC---CeEEEEeccCccCcccHHHHHHh----cc---cceec-cccccCCCC------CCc
Q 006905 470 YRNILDMNAHLGGFAAALIDF---PVWVMNVVPAEAKINTLGVIYER----GL---VGTYT-NWCEAMSTY------PRT 532 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~---~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~-~~~e~~~~y------p~t 532 (626)
-++|||+|||.|..+..|++. +. .|+.+|.++.+++++.++ |+ |.+.+ |..+.+..+ +.+
T Consensus 71 ~~~VLeiG~G~G~~~~~la~~~~~~~---~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 147 (237)
T 3c3y_A 71 AKKTIEVGVFTGYSLLLTALSIPDDG---KITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGS 147 (237)
T ss_dssp CCEEEEECCTTSHHHHHHHHHSCTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence 468999999999999999764 33 688899998899887654 54 33333 233322223 478
Q ss_pred cceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 533 YDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 533 ~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
||+|.++.. .-+...++.++.|+|||||.+++.+
T Consensus 148 fD~I~~d~~------~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 148 YDFGFVDAD------KPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp EEEEEECSC------GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCEEEECCc------hHHHHHHHHHHHHhcCCCeEEEEec
Confidence 999998532 2245789999999999999999964
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.28 E-value=9.8e-07 Score=92.96 Aligned_cols=120 Identities=15% Similarity=0.064 Sum_probs=79.5
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc----cceeccccccCCC-C---CCccceee
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL----VGTYTNWCEAMST-Y---PRTYDLIH 537 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl----i~~~~~~~e~~~~-y---p~t~Dlih 537 (626)
-.+|||+|||+|+|+.+++..+. .|+.+|.++.+++.+.++ |+ +.+++.=+..+.. . .++||+|.
T Consensus 154 ~~~VLDlgcGtG~~sl~la~~ga---~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 154 PLKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCcEEEcccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 45799999999999999999876 799999999999988765 33 2233311111111 1 36899998
Q ss_pred eccc-cccCCC------CCCHHHHHHHhhhhccCCcEEEEEcC------h-HHHHHHHHHHHhCCCeeE
Q 006905 538 ADSV-FSLYKD------RCETEDILLEMDRILRPEGGVIFRDD------V-DELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 538 ~~~~-f~~~~~------~c~~~~~l~E~dRiLRPgG~~i~~d~------~-~~~~~~~~~~~~l~w~~~ 592 (626)
++-- |..... .-++..++.++.|+|+|||.+++... . .....+++.++....++.
T Consensus 231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~ 299 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA 299 (332)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 8543 221110 11356799999999999999877532 1 234444545556666654
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=4.7e-06 Score=85.12 Aligned_cols=121 Identities=15% Similarity=0.110 Sum_probs=75.5
Q ss_pred CCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcc
Q 006905 190 FPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLA 265 (626)
Q Consensus 190 F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d 265 (626)
|...+...+.+|.+...+.+ ..+|||||||+|.|+.+++++ .+.++++.. |+....+.. ...+.++.....+
T Consensus 55 YrSRaA~KL~ei~ek~~l~~--~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGv-Dl~~~pi~~-~~~g~~ii~~~~~ 130 (277)
T 3evf_A 55 AVSRGTAKLRWFHERGYVKL--EGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGR-DGHEKPMNV-QSLGWNIITFKDK 130 (277)
T ss_dssp CSSTHHHHHHHHHHTTSSCC--CEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCC-TTCCCCCCC-CBTTGGGEEEECS
T ss_pred ccccHHHHHHHHHHhCCCCC--CCEEEEecCCCCHHHHHHHHhcCCCcceeEEEec-cCccccccc-CcCCCCeEEEecc
Confidence 44555555556665533333 458999999999999988765 456677753 321100000 0112234444444
Q ss_pred cccCCCCCCCeeEEEeccccc---cccccHH--HHHHHHHhcccCC-eEEEEEeC
Q 006905 266 AERLPYPSRAFDMAHCSRCLI---PWNQFGG--IYLIEVDRVLRPG-GYWILSGP 314 (626)
Q Consensus 266 ~~~Lpf~d~sFDlV~~~~~l~---h~~~~~~--~~L~Ei~RvLKPG-G~lvis~p 314 (626)
++...++.+.||+|+|..+.+ ++.+... .+|..+.++|+|| |.|++...
T Consensus 131 ~dv~~l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf 185 (277)
T 3evf_A 131 TDIHRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVL 185 (277)
T ss_dssp CCTTTSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred ceehhcCCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEec
Confidence 455567788999999987553 2333321 3578889999999 99999754
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=1.7e-06 Score=90.61 Aligned_cols=142 Identities=17% Similarity=0.153 Sum_probs=89.8
Q ss_pred ceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhc------c----cceec-cccccCCCCCCccceee
Q 006905 470 YRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERG------L----VGTYT-NWCEAMSTYPRTYDLIH 537 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rg------l----i~~~~-~~~e~~~~yp~t~Dlih 537 (626)
-.+|||+|||.|+++..+++. +. .+|+.+|.++.+++++.++- + +.+++ |..+.+...+++||+|.
T Consensus 117 ~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 117 PKNVLVVGGGDGGIIRELCKYKSV--ENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp CCEEEEEECTTCHHHHHHTTCTTC--CEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCEEEEEcCCccHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 468999999999999999987 33 37899999999999988752 2 22222 22221222358999999
Q ss_pred eccccccCCCCCCH--HHHHHHhhhhccCCcEEEEEc-----ChHHHHHHHHHHHhCCCeeEEeecC--CCCCCcceEEE
Q 006905 538 ADSVFSLYKDRCET--EDILLEMDRILRPEGGVIFRD-----DVDELVKVKRIIDALKWQSQIVDHE--DGPLEREKLLF 608 (626)
Q Consensus 538 ~~~~f~~~~~~c~~--~~~l~E~dRiLRPgG~~i~~d-----~~~~~~~~~~~~~~l~w~~~~~~~e--~~~~~~e~~l~ 608 (626)
++.. ......-.+ ..++.++.|+|||||.+++.. ..+.+..+.+.++..--.+...... ..+.+.-.+++
T Consensus 195 ~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~w~f~~ 273 (321)
T 2pt6_A 195 VDSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGILC 273 (321)
T ss_dssp EECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTTCSEEEEEEEECTTSGGGEEEEEE
T ss_pred ECCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCCeEEEEEEeccccCceEEEEE
Confidence 8642 222111111 689999999999999999953 2234455555555554444433211 11212345788
Q ss_pred EEeccc
Q 006905 609 AVKLYW 614 (626)
Q Consensus 609 ~~K~~w 614 (626)
|.|.+-
T Consensus 274 as~~~~ 279 (321)
T 2pt6_A 274 CSKTDT 279 (321)
T ss_dssp EESSTT
T ss_pred eeCCCC
Confidence 988753
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.26 E-value=3.3e-06 Score=92.23 Aligned_cols=116 Identities=15% Similarity=0.092 Sum_probs=80.2
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhh-----------------CCcEEEeCCccchHHHHHHHHHHcCC
Q 006905 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLS-----------------RNIITMSFAPRDTHEAQVQFALERGV 257 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~-----------------~~V~avdis~~dls~a~i~~A~erg~ 257 (626)
...++.+.+++... .+.+|||.|||+|.++..+++ ..++++|+++.....+..+.. .+++
T Consensus 157 ~~v~~~mv~~l~~~--~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~-l~g~ 233 (445)
T 2okc_A 157 RPLIQAMVDCINPQ--MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY-LHGI 233 (445)
T ss_dssp HHHHHHHHHHHCCC--TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH-HTTC
T ss_pred HHHHHHHHHHhCCC--CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHH-HhCC
Confidence 34556667766433 345899999999998877654 468999998755544443333 3455
Q ss_pred ---CeEEEEcccccCCCCCCCeeEEEecccccccccc----------------HHHHHHHHHhcccCCeEEEEEeC
Q 006905 258 ---PALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQF----------------GGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 258 ---~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~~----------------~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
...+..+|+...+.. ..||+|+++..+.+.... ...++..+.++|||||++++..|
T Consensus 234 ~~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 234 GTDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp CSSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 455667776665543 489999998776442211 13789999999999999999865
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.24 E-value=4.5e-07 Score=100.24 Aligned_cols=96 Identities=15% Similarity=0.164 Sum_probs=70.4
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc---cceeccccccCCCCCCccceeeecccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL---VGTYTNWCEAMSTYPRTYDLIHADSVF 542 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~~~~e~~~~yp~t~Dlih~~~~f 542 (626)
-.+|||+|||.|.++..|++.+. ..|+.+|.++ ++..+.++ |+ +.+++.-.+.+ .+|..||+|.+..++
T Consensus 159 ~~~VLDiGcGtG~la~~la~~~~--~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~-~~~~~fD~Ivs~~~~ 234 (480)
T 3b3j_A 159 DKIVLDVGCGSGILSFFAAQAGA--RKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEV-SLPEQVDIIISEPMG 234 (480)
T ss_dssp TCEEEEESCSTTHHHHHHHHTTC--SEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTC-CCSSCEEEEECCCCH
T ss_pred CCEEEEecCcccHHHHHHHHcCC--CEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhC-ccCCCeEEEEEeCch
Confidence 46899999999999999988764 2788899985 87766554 54 44444211111 346899999998776
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEE
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIF 570 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~ 570 (626)
.+.... ++...|.++.|+|||||.+++
T Consensus 235 ~~~~~e-~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 235 YMLFNE-RMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp HHHTCH-HHHHHHHHGGGGEEEEEEEES
T ss_pred HhcCcH-HHHHHHHHHHHhcCCCCEEEE
Confidence 655432 456678899999999999985
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=2.7e-06 Score=88.11 Aligned_cols=89 Identities=12% Similarity=0.011 Sum_probs=61.5
Q ss_pred CCCEEEEeCCCC------ch-HHHHHhh--CCcEEEeCCccchHHHHHHHHHHcCCCeEE-EEcccccCCCCCCCeeEEE
Q 006905 211 SIRTAIDTGCGV------AS-WGAYLLS--RNIITMSFAPRDTHEAQVQFALERGVPALI-GVLAAERLPYPSRAFDMAH 280 (626)
Q Consensus 211 ~~~~VLDIGCGt------G~-~a~~La~--~~V~avdis~~dls~a~i~~A~erg~~~~~-~v~d~~~Lpf~d~sFDlV~ 280 (626)
++.+|||+|||+ |+ .++.+.. ..|+++|+++. + . .+.+ .++|...++++ ++||+|+
T Consensus 63 ~g~~VLDLGcGsg~~~GpGs~~~a~~~~~~~~V~gvDis~~-v----------~--~v~~~i~gD~~~~~~~-~~fD~Vv 128 (290)
T 2xyq_A 63 YNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDF-V----------S--DADSTLIGDCATVHTA-NKWDLII 128 (290)
T ss_dssp TTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCC-B----------C--SSSEEEESCGGGCCCS-SCEEEEE
T ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHcCCCCEEEEEECCCC-C----------C--CCEEEEECccccCCcc-CcccEEE
Confidence 356899999954 65 2222222 36899999885 1 1 2446 77888887765 6899999
Q ss_pred ecccccccc-----------ccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 281 CSRCLIPWN-----------QFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 281 ~~~~l~h~~-----------~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
|+... ++. .....+++++.|+|||||.|++...
T Consensus 129 sn~~~-~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~ 172 (290)
T 2xyq_A 129 SDMYD-PRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKIT 172 (290)
T ss_dssp ECCCC-CC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EcCCc-cccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 97542 211 1114789999999999999999754
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.4e-06 Score=88.96 Aligned_cols=114 Identities=17% Similarity=0.157 Sum_probs=77.7
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceeccccccCCCCCCccceeeeccccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYTNWCEAMSTYPRTYDLIHADSVFS 543 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~~~~e~~~~yp~t~Dlih~~~~f~ 543 (626)
-.+|||+|||+|+|+..|++..- ...|+.+|.++.+++.+.++ |+ +-+++.=.+.+ ..+.+||+|.++...
T Consensus 120 ~~~VLDlgcG~G~~s~~la~~~~-~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~~~~~D~Vi~d~p~- 196 (272)
T 3a27_A 120 NEVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-ELKDVADRVIMGYVH- 196 (272)
T ss_dssp TCEEEETTCTTTTTHHHHHHHTC-CSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CCTTCEEEEEECCCS-
T ss_pred CCEEEEecCcCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-CccCCceEEEECCcc-
Confidence 45799999999999999987621 12688899998898887663 33 22333222223 225789999886443
Q ss_pred cCCCCCCHHHHHHHhhhhccCCcEEEEEcCh------HHH-HHHHHHHHhCCCeeE
Q 006905 544 LYKDRCETEDILLEMDRILRPEGGVIFRDDV------DEL-VKVKRIIDALKWQSQ 592 (626)
Q Consensus 544 ~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~------~~~-~~~~~~~~~l~w~~~ 592 (626)
+...++.++-|+|||||.+++++.. +.. ..++.+.+.+.++..
T Consensus 197 ------~~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (272)
T 3a27_A 197 ------KTHKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAEKNGYKLI 246 (272)
T ss_dssp ------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHHHTTEEEE
T ss_pred ------cHHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHHHhCCeeE
Confidence 5577899999999999999998543 233 334445555555554
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=5.9e-06 Score=84.83 Aligned_cols=141 Identities=17% Similarity=0.166 Sum_probs=86.6
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc------c----cceec-cccccCCCCCCccceeee
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG------L----VGTYT-NWCEAMSTYPRTYDLIHA 538 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg------l----i~~~~-~~~e~~~~yp~t~Dlih~ 538 (626)
-++|||+|||.|+++..+++.+ -+.+|+.+|.++.+++++.++- + +.+.+ |..+.....+++||+|.+
T Consensus 79 ~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 157 (283)
T 2i7c_A 79 PKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 157 (283)
T ss_dssp CCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCeEEEEeCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEE
Confidence 4789999999999999998873 1247889999989999888752 1 12222 211111122689999998
Q ss_pred ccccccCCCCCCH--HHHHHHhhhhccCCcEEEEEcC-----hHHHHHHHHHHHhCCCeeEEeecCCC--CCCcceEEEE
Q 006905 539 DSVFSLYKDRCET--EDILLEMDRILRPEGGVIFRDD-----VDELVKVKRIIDALKWQSQIVDHEDG--PLEREKLLFA 609 (626)
Q Consensus 539 ~~~f~~~~~~c~~--~~~l~E~dRiLRPgG~~i~~d~-----~~~~~~~~~~~~~l~w~~~~~~~e~~--~~~~e~~l~~ 609 (626)
+......... .+ ..++.++.|+|||||.+++... .+....+.+.+++.--.+..+...-- +.+.-.+++|
T Consensus 158 d~~~~~~~~~-~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vP~y~~g~~g~~~~ 236 (283)
T 2i7c_A 158 DSSDPIGPAE-TLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGILCC 236 (283)
T ss_dssp ECCCTTTGGG-GGSSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEEECTTSGGGEEEEEEE
T ss_pred cCCCCCCcch-hhhHHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHHHCCceEEEEEEcCCcCCCcEEEEEE
Confidence 6433221111 22 6899999999999999999732 23344444444444233333222111 1122357778
Q ss_pred Eec
Q 006905 610 VKL 612 (626)
Q Consensus 610 ~K~ 612 (626)
.|.
T Consensus 237 s~~ 239 (283)
T 2i7c_A 237 SKT 239 (283)
T ss_dssp ESS
T ss_pred eCC
Confidence 776
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.21 E-value=3.3e-06 Score=88.42 Aligned_cols=142 Identities=12% Similarity=0.014 Sum_probs=87.7
Q ss_pred ceeEEeccCchhhHhhhhhC-C-CeEEEEeccCccCcccHHHHHHhcc------cceec-cccccCCCCC-Cccceeeec
Q 006905 470 YRNILDMNAHLGGFAAALID-F-PVWVMNVVPAEAKINTLGVIYERGL------VGTYT-NWCEAMSTYP-RTYDLIHAD 539 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~-~-~v~~mnv~~~~~~~~~l~~~~~rgl------i~~~~-~~~e~~~~yp-~t~Dlih~~ 539 (626)
-.+|||+|||.|+++.+|++ . ++ .|+.+|.++.+++++.++-- +.+++ |-.+-+..++ ++||+|.++
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~---~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D 166 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQS---RNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRD 166 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTC---EEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEEC
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCc---EEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEEC
Confidence 44899999999999999998 3 44 67788888889999887631 22333 2222223455 899999986
Q ss_pred cccccCCCCCC--HHHHHHHhhhhccCCcEEEEEcC--h--HHHHHHHHHHHhCCCeeEEee-cC--CCCCCcceEEEEE
Q 006905 540 SVFSLYKDRCE--TEDILLEMDRILRPEGGVIFRDD--V--DELVKVKRIIDALKWQSQIVD-HE--DGPLEREKLLFAV 610 (626)
Q Consensus 540 ~~f~~~~~~c~--~~~~l~E~dRiLRPgG~~i~~d~--~--~~~~~~~~~~~~l~w~~~~~~-~e--~~~~~~e~~l~~~ 610 (626)
. |......-. -..++.++.|+|||||.+++.-. . +.+..+...++..=-.+.++. .. .|......|++|.
T Consensus 167 ~-~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~vF~~v~~~~~~~~~~g~~~gN~Vl~As 245 (317)
T 3gjy_A 167 V-FAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEVFEHVAVIADPPMLKGRRYGNIILMGS 245 (317)
T ss_dssp C-STTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHHCSEEEEEECHHHHTTSSCEEEEEEEE
T ss_pred C-CCccccchhhhHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHHCCceEEEEecCCCCCCcCceEEEEEE
Confidence 4 333221111 26799999999999999998522 1 222233333322222344332 11 2222346789999
Q ss_pred ecccC
Q 006905 611 KLYWT 615 (626)
Q Consensus 611 K~~w~ 615 (626)
|...-
T Consensus 246 ~~plp 250 (317)
T 3gjy_A 246 DTEFF 250 (317)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 87653
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.21 E-value=8.4e-08 Score=96.21 Aligned_cols=111 Identities=14% Similarity=0.101 Sum_probs=69.1
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCC-
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPS- 273 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d- 273 (626)
..+.+.+.+.... +.+|||||||+|.++..|+++ .++++|+++.++..+..+.. ....+.+..+|...+++++
T Consensus 17 ~~~~i~~~~~~~~--~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~~~~~~~~ 92 (245)
T 1yub_A 17 VLNQIIKQLNLKE--TDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQFPNK 92 (245)
T ss_dssp THHHHHHHCCCCS--SEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTCCCS
T ss_pred HHHHHHHhcCCCC--CCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhc--cCCceEEEECChhhcCcccC
Confidence 3445566654433 458999999999999999886 57888887755432221111 1124667778888888774
Q ss_pred CCeeEEEecccccccc----------ccHHHHH----HHHHhcccCCeEEEEE
Q 006905 274 RAFDMAHCSRCLIPWN----------QFGGIYL----IEVDRVLRPGGYWILS 312 (626)
Q Consensus 274 ~sFDlV~~~~~l~h~~----------~~~~~~L----~Ei~RvLKPGG~lvis 312 (626)
++| .|+++.....-. .....++ +.+.|+|+|||.+.+.
T Consensus 93 ~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~ 144 (245)
T 1yub_A 93 QRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLL 144 (245)
T ss_dssp SEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHH
T ss_pred CCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhh
Confidence 689 777765331100 0112233 5578888888877664
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=1.3e-06 Score=89.64 Aligned_cols=99 Identities=13% Similarity=0.060 Sum_probs=70.3
Q ss_pred CCceeEEeccCch--hhHhhhhhC---CCeEEEEeccCccCcccHHHHHHhcc------cceeccccccCCCC------C
Q 006905 468 GRYRNILDMNAHL--GGFAAALID---FPVWVMNVVPAEAKINTLGVIYERGL------VGTYTNWCEAMSTY------P 530 (626)
Q Consensus 468 ~~~r~vlD~g~g~--G~faa~l~~---~~v~~mnv~~~~~~~~~l~~~~~rgl------i~~~~~~~e~~~~y------p 530 (626)
..+|.|||+|||+ ++....++. .+. .|+.+|+++.||..+.++-- +...+ ..+... |
T Consensus 77 ~g~~q~LDLGcG~pT~~~~~~la~~~~P~a---rVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~---aD~~~~~~~l~~~ 150 (277)
T 3giw_A 77 AGIRQFLDIGTGIPTSPNLHEIAQSVAPES---RVVYVDNDPIVLTLSQGLLASTPEGRTAYVE---ADMLDPASILDAP 150 (277)
T ss_dssp SCCCEEEEESCCSCCSSCHHHHHHHHCTTC---EEEEEECCHHHHHTTHHHHCCCSSSEEEEEE---CCTTCHHHHHTCH
T ss_pred cCCCEEEEeCCCCCcccHHHHHHHHHCCCC---EEEEEeCChHHHHHHHHHhccCCCCcEEEEE---ecccChhhhhccc
Confidence 4589999999998 433333332 233 79999999999998876521 12222 233221 2
Q ss_pred ---Cccc-----eeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 531 ---RTYD-----LIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 531 ---~t~D-----lih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
++|| .|.++.+|.+..+..+...+|.++.+.|+|||+|++++
T Consensus 151 ~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~ 200 (277)
T 3giw_A 151 ELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSI 200 (277)
T ss_dssp HHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEE
T ss_pred ccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEe
Confidence 5566 47788999988875556789999999999999999983
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=7.1e-07 Score=88.36 Aligned_cols=92 Identities=18% Similarity=0.166 Sum_probs=66.8
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceeccccccCCCCC--Cccceeeeccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYTNWCEAMSTYP--RTYDLIHADSV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~~~~e~~~~yp--~t~Dlih~~~~ 541 (626)
-.+|||+|||.|.+++.|++..- .+|+.+|.++.+++.+.++ |+ +.+.. +.....+| ..||+|.+...
T Consensus 92 ~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~--~d~~~~~~~~~~fD~Ii~~~~ 167 (235)
T 1jg1_A 92 GMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVIL--GDGSKGFPPKAPYDVIIVTAG 167 (235)
T ss_dssp TCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEE--SCGGGCCGGGCCEEEEEECSB
T ss_pred CCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE--CCcccCCCCCCCccEEEECCc
Confidence 45899999999999999987631 3688889888899888775 32 22222 11133455 34999999777
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFRDDV 574 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~ 574 (626)
+.+.. .++.|+|||||.+++.-..
T Consensus 168 ~~~~~---------~~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 168 APKIP---------EPLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp BSSCC---------HHHHHTEEEEEEEEEEECS
T ss_pred HHHHH---------HHHHHhcCCCcEEEEEEec
Confidence 76543 3789999999999997543
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=6.4e-06 Score=85.63 Aligned_cols=142 Identities=18% Similarity=0.165 Sum_probs=84.6
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh------cc----cceec-cccccCCCCCCccceeee
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER------GL----VGTYT-NWCEAMSTYPRTYDLIHA 538 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r------gl----i~~~~-~~~e~~~~yp~t~Dlih~ 538 (626)
-++|||+|||.|+++..|++.+ -+.+|+.+|.++.+++++.++ |+ +.+++ |-.+.+...+++||+|.+
T Consensus 96 ~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~ 174 (304)
T 2o07_A 96 PRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT 174 (304)
T ss_dssp CCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred CCEEEEECCCchHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEE
Confidence 4789999999999999999873 123788899998999988775 22 22332 111111223589999998
Q ss_pred ccccccCCCC-CCHHHHHHHhhhhccCCcEEEEEc-C----hHHHHHHHHHHHhCCCeeEEee--cCCCCCCcceEEEEE
Q 006905 539 DSVFSLYKDR-CETEDILLEMDRILRPEGGVIFRD-D----VDELVKVKRIIDALKWQSQIVD--HEDGPLEREKLLFAV 610 (626)
Q Consensus 539 ~~~f~~~~~~-c~~~~~l~E~dRiLRPgG~~i~~d-~----~~~~~~~~~~~~~l~w~~~~~~--~e~~~~~~e~~l~~~ 610 (626)
+......... -....++.++.|+|||||.+++.. . .+....+.+.++.+-=.+...- .-.-+.+...+++|.
T Consensus 175 d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~~~g~~g~~~as 254 (304)
T 2o07_A 175 DSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIPTYPSGQIGFMLCS 254 (304)
T ss_dssp ECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSEEEEEEEECTTSGGGEEEEEEEE
T ss_pred CCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHHhCCCceeEEEEeccccCcceEEEEEe
Confidence 6433211110 012468999999999999999864 1 2344455444444432333221 111111234578888
Q ss_pred ec
Q 006905 611 KL 612 (626)
Q Consensus 611 K~ 612 (626)
|.
T Consensus 255 ~~ 256 (304)
T 2o07_A 255 KN 256 (304)
T ss_dssp SS
T ss_pred CC
Confidence 86
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=4.4e-06 Score=86.63 Aligned_cols=87 Identities=10% Similarity=-0.004 Sum_probs=66.3
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCC
Q 006905 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYP 272 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~ 272 (626)
...++.|.+.+.... +.+|||||||+|.++..|+++ .|+++|+++..+..+..+.. ....+.+..+|+..++++
T Consensus 36 ~~i~~~Iv~~l~~~~--~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~--~~~~v~vi~gD~l~~~~~ 111 (295)
T 3gru_A 36 KNFVNKAVESANLTK--DDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKE--LYNNIEIIWGDALKVDLN 111 (295)
T ss_dssp HHHHHHHHHHTTCCT--TCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHH--HCSSEEEEESCTTTSCGG
T ss_pred HHHHHHHHHhcCCCC--cCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhc--cCCCeEEEECchhhCCcc
Confidence 345666777765544 458999999999999999886 68999999876665444433 233577888899888888
Q ss_pred CCCeeEEEecccc
Q 006905 273 SRAFDMAHCSRCL 285 (626)
Q Consensus 273 d~sFDlV~~~~~l 285 (626)
+.+||.|+++..+
T Consensus 112 ~~~fD~Iv~NlPy 124 (295)
T 3gru_A 112 KLDFNKVVANLPY 124 (295)
T ss_dssp GSCCSEEEEECCG
T ss_pred cCCccEEEEeCcc
Confidence 8889999998754
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=4.5e-06 Score=86.41 Aligned_cols=128 Identities=9% Similarity=0.105 Sum_probs=76.9
Q ss_pred ceeEEeccC------chhh-HhhhhhCCCeEEEEeccCccCcccHHHHHHhcccce-ec-cccccCCCCCCccceeeecc
Q 006905 470 YRNILDMNA------HLGG-FAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGT-YT-NWCEAMSTYPRTYDLIHADS 540 (626)
Q Consensus 470 ~r~vlD~g~------g~G~-faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~-~~-~~~e~~~~yp~t~Dlih~~~ 540 (626)
-.+|||+|| |.|+ .++.+...+. .|+.+|.++. + + + +.+ ++ |+.+ + .++.+||+|.++.
T Consensus 64 g~~VLDLGcGsg~~~GpGs~~~a~~~~~~~---~V~gvDis~~-v----~-~-v~~~i~gD~~~-~-~~~~~fD~Vvsn~ 131 (290)
T 2xyq_A 64 NMRVIHFGAGSDKGVAPGTAVLRQWLPTGT---LLVDSDLNDF-V----S-D-ADSTLIGDCAT-V-HTANKWDLIISDM 131 (290)
T ss_dssp TCEEEEESCCCTTSBCHHHHHHHHHSCTTC---EEEEEESSCC-B----C-S-SSEEEESCGGG-C-CCSSCEEEEEECC
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHcCCCC---EEEEEECCCC-C----C-C-CEEEEECcccc-C-CccCcccEEEEcC
Confidence 457999999 5576 2333333223 5788888855 2 2 2 233 33 3322 1 2348999999975
Q ss_pred cccc--------CCCCCCHHHHHHHhhhhccCCcEEEEEcCh-HHHHHHHHHHHhCCC-eeEEeecCCCCCCcceEEEEE
Q 006905 541 VFSL--------YKDRCETEDILLEMDRILRPEGGVIFRDDV-DELVKVKRIIDALKW-QSQIVDHEDGPLEREKLLFAV 610 (626)
Q Consensus 541 ~f~~--------~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~-~~~~~~~~~~~~l~w-~~~~~~~e~~~~~~e~~l~~~ 610 (626)
.... ......++.+|.|+.|+|||||.|++.... .....+.++++...+ .+.++-.. ....|-+|+++
T Consensus 132 ~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~~GF~~v~~~asr--~~s~e~~lv~~ 209 (290)
T 2xyq_A 132 YDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSWWTAFVTNVN--ASSSEAFLIGA 209 (290)
T ss_dssp CCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEEEEEEEEGGG--TTSSCEEEEEE
T ss_pred CccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHHcCCcEEEEEEcC--CCchheEEecC
Confidence 4321 111123457999999999999999995422 223467777777644 44444112 22468888887
Q ss_pred e
Q 006905 611 K 611 (626)
Q Consensus 611 K 611 (626)
.
T Consensus 210 ~ 210 (290)
T 2xyq_A 210 N 210 (290)
T ss_dssp E
T ss_pred C
Confidence 6
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.18 E-value=4e-07 Score=91.06 Aligned_cols=99 Identities=13% Similarity=0.060 Sum_probs=61.4
Q ss_pred ceeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHHHh----cc---cceecccccc--CCCCC----Cccc
Q 006905 470 YRNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIYER----GL---VGTYTNWCEA--MSTYP----RTYD 534 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~~~~e~--~~~yp----~t~D 534 (626)
-.+|||+|||+|.++..|+.+ +. +|+.+|.++.+++.+.++ |+ +.+++.=.+. +..++ .+||
T Consensus 66 ~~~vLDlG~G~G~~~~~la~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (254)
T 2h00_A 66 LRRGIDIGTGASCIYPLLGATLNGW---YFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYD 142 (254)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBS
T ss_pred CCEEEEeCCChhHHHHHHHHhCCCC---eEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCccc
Confidence 457999999999999988865 33 789999999999988765 33 3344421111 22344 5899
Q ss_pred eeeeccccccCCC-------C-----CCHHHHHHHhhhhccCCcEEEEE
Q 006905 535 LIHADSVFSLYKD-------R-----CETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 535 lih~~~~f~~~~~-------~-----c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
+|.++-.|..... + .....++.++.|+|||||.+.+.
T Consensus 143 ~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~ 191 (254)
T 2h00_A 143 FCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV 191 (254)
T ss_dssp EEEECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred EEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence 9999855543220 0 11124566788888887776554
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.15 E-value=1.4e-06 Score=88.87 Aligned_cols=115 Identities=17% Similarity=0.140 Sum_probs=74.4
Q ss_pred ceeEEeccCchhhHhhhhhC--CCeEEEEeccCccCcccHHHHHHh----cc--cceeccccccCCCC----CCccceee
Q 006905 470 YRNILDMNAHLGGFAAALID--FPVWVMNVVPAEAKINTLGVIYER----GL--VGTYTNWCEAMSTY----PRTYDLIH 537 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~--~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~~~~e~~~~y----p~t~Dlih 537 (626)
-.+|||+|||.|+++..|++ .+. ..|+.+|.++.++..+.++ |+ +.+++.-.+.+... +..||+|.
T Consensus 84 g~~VLDlgaG~G~~t~~la~~~~~~--~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 161 (274)
T 3ajd_A 84 DDFILDMCAAPGGKTTHLAQLMKNK--GTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKIL 161 (274)
T ss_dssp TCEEEETTCTTCHHHHHHHHHTTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCEEEEeCCCccHHHHHHHHHcCCC--CEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEE
Confidence 35799999999999999986 331 1688999998899887766 44 23333111122211 47899999
Q ss_pred eccccccCCC---------------CCCHHHHHHHhhhhccCCcEEEEEc----ChHHHHHHHHHHHh
Q 006905 538 ADSVFSLYKD---------------RCETEDILLEMDRILRPEGGVIFRD----DVDELVKVKRIIDA 586 (626)
Q Consensus 538 ~~~~f~~~~~---------------~c~~~~~l~E~dRiLRPgG~~i~~d----~~~~~~~~~~~~~~ 586 (626)
++--++.... .-....+|.++.|+|||||.++++. ..+....++.+++.
T Consensus 162 ~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~~l~~ 229 (274)
T 3ajd_A 162 LDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQK 229 (274)
T ss_dssp EEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHHHHHH
T ss_pred EcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHHHHHh
Confidence 8744432110 0234679999999999999999963 12333445555543
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=5.4e-06 Score=87.73 Aligned_cols=140 Identities=11% Similarity=0.153 Sum_probs=95.3
Q ss_pred hhhcCCCCCceeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHHHhc---c---cceeccccccCCCCC-C
Q 006905 461 NNQLGQSGRYRNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIYERG---L---VGTYTNWCEAMSTYP-R 531 (626)
Q Consensus 461 ~~~~~~~~~~r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~~rg---l---i~~~~~~~e~~~~yp-~ 531 (626)
+..+.. ...++|+|+|||.|.++.+|+++ ++ .++-.|.+ .+++.+.++- . |.... .+|-+-| .
T Consensus 172 ~~~~~~-~~~~~v~DvGgG~G~~~~~l~~~~p~~---~~~~~dlp-~v~~~a~~~~~~~~~~rv~~~~---gD~~~~~~~ 243 (353)
T 4a6d_A 172 LTAFDL-SVFPLMCDLGGGAGALAKECMSLYPGC---KITVFDIP-EVVWTAKQHFSFQEEEQIDFQE---GDFFKDPLP 243 (353)
T ss_dssp HHSSCG-GGCSEEEEETCTTSHHHHHHHHHCSSC---EEEEEECH-HHHHHHHHHSCC--CCSEEEEE---SCTTTSCCC
T ss_pred HHhcCc-ccCCeEEeeCCCCCHHHHHHHHhCCCc---eeEeccCH-HHHHHHHHhhhhcccCceeeec---CccccCCCC
Confidence 333444 66889999999999999999876 23 44555664 7777776542 1 22222 2333223 6
Q ss_pred ccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh--------------H------------HHHHHHHHHH
Q 006905 532 TYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV--------------D------------ELVKVKRIID 585 (626)
Q Consensus 532 t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~--------------~------------~~~~~~~~~~ 585 (626)
.+|++.+..++.++.+. +...+|.++.|.|+|||.++|-|.+ + ...+.+++++
T Consensus 244 ~~D~~~~~~vlh~~~d~-~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~ 322 (353)
T 4a6d_A 244 EADLYILARVLHDWADG-KCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLS 322 (353)
T ss_dssp CCSEEEEESSGGGSCHH-HHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHH
T ss_pred CceEEEeeeecccCCHH-HHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHH
Confidence 68999999999988753 3457999999999999999997631 1 1345677788
Q ss_pred hCCCeeEEeecCCCCCCcceEEEEEec
Q 006905 586 ALKWQSQIVDHEDGPLEREKLLFAVKL 612 (626)
Q Consensus 586 ~l~w~~~~~~~e~~~~~~e~~l~~~K~ 612 (626)
+--|+..-+..- + ....+++|+|.
T Consensus 323 ~AGf~~v~v~~~-~--~~~~~i~ArKg 346 (353)
T 4a6d_A 323 SAGFRDFQFKKT-G--AIYDAILARKG 346 (353)
T ss_dssp HHTCEEEEEECC-S--SSCEEEEEECC
T ss_pred HCCCceEEEEEc-C--CceEEEEEEec
Confidence 778876543322 2 24568999995
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.14 E-value=3e-06 Score=90.78 Aligned_cols=97 Identities=18% Similarity=0.126 Sum_probs=70.6
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHH----HHhcc---cceeccccccCCCCCCccceeeeccccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVI----YERGL---VGTYTNWCEAMSTYPRTYDLIHADSVFS 543 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~----~~rgl---i~~~~~~~e~~~~yp~t~Dlih~~~~f~ 543 (626)
.+|||+|||+|.++...++.|.- .|.++|.+ +++..+ .+.|+ |.+++.-.+.+ ..|..||+|.|..+-.
T Consensus 85 k~VLDvG~GtGiLs~~Aa~aGA~--~V~ave~s-~~~~~a~~~~~~n~~~~~i~~i~~~~~~~-~lpe~~DvivsE~~~~ 160 (376)
T 4hc4_A 85 KTVLDVGAGTGILSIFCAQAGAR--RVYAVEAS-AIWQQAREVVRFNGLEDRVHVLPGPVETV-ELPEQVDAIVSEWMGY 160 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCS--EEEEEECS-TTHHHHHHHHHHTTCTTTEEEEESCTTTC-CCSSCEEEEECCCCBT
T ss_pred CEEEEeCCCccHHHHHHHHhCCC--EEEEEeCh-HHHHHHHHHHHHcCCCceEEEEeeeeeee-cCCccccEEEeecccc
Confidence 46999999999998777766541 45667776 465544 44566 55666433333 3578999999977666
Q ss_pred cCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 544 LYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 544 ~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
.+.....++.++...+|.|+|||.+|-+
T Consensus 161 ~l~~e~~l~~~l~a~~r~Lkp~G~~iP~ 188 (376)
T 4hc4_A 161 GLLHESMLSSVLHARTKWLKEGGLLLPA 188 (376)
T ss_dssp TBTTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred cccccchhhhHHHHHHhhCCCCceECCc
Confidence 5555567899999999999999998863
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.13 E-value=4.9e-06 Score=83.51 Aligned_cols=83 Identities=13% Similarity=0.146 Sum_probs=56.4
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcC---CCeEEEEcccccC
Q 006905 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERG---VPALIGVLAAERL 269 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg---~~~~~~v~d~~~L 269 (626)
...++.+.+.+... .+.+|||||||+|.++..|+++ .++++|+++. +++.++++. ..+.+..+|+..+
T Consensus 16 ~~~~~~i~~~~~~~--~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~-----~~~~a~~~~~~~~~v~~~~~D~~~~ 88 (244)
T 1qam_A 16 KHNIDKIMTNIRLN--EHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHK-----LCKTTENKLVDHDNFQVLNKDILQF 88 (244)
T ss_dssp HHHHHHHHTTCCCC--TTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHH-----HHHHHHHHTTTCCSEEEECCCGGGC
T ss_pred HHHHHHHHHhCCCC--CCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHH-----HHHHHHHhhccCCCeEEEEChHHhC
Confidence 34555666665443 3458999999999999999986 5777777664 444444332 3577888888888
Q ss_pred CCCC-CCeeEEEecccc
Q 006905 270 PYPS-RAFDMAHCSRCL 285 (626)
Q Consensus 270 pf~d-~sFDlV~~~~~l 285 (626)
++++ ..| .|+++...
T Consensus 89 ~~~~~~~~-~vv~nlPy 104 (244)
T 1qam_A 89 KFPKNQSY-KIFGNIPY 104 (244)
T ss_dssp CCCSSCCC-EEEEECCG
T ss_pred CcccCCCe-EEEEeCCc
Confidence 8874 456 56666544
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.13 E-value=4.7e-06 Score=88.84 Aligned_cols=117 Identities=10% Similarity=0.074 Sum_probs=81.2
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceec-cccccCCC-CCCccceeeeccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYT-NWCEAMST-YPRTYDLIHADSV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~-~~~e~~~~-yp~t~Dlih~~~~ 541 (626)
-.+|||+| |.|.++.+|+..+. ...|+.+|.++.+++++.++ |+ +.+++ |..+.++. ++.+||+|.++..
T Consensus 173 ~~~VLDlG-G~G~~~~~la~~~~-~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p 250 (373)
T 2qm3_A 173 NKDIFVLG-DDDLTSIALMLSGL-PKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPP 250 (373)
T ss_dssp TCEEEEES-CTTCHHHHHHHHTC-CSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCC
T ss_pred CCEEEEEC-CCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCC
Confidence 46899999 99999999987532 12689999999999998876 54 44443 33222332 2358999999877
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcE-EEEEcC-----hHHHHHHHHHHH-hCCCeeE
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGG-VIFRDD-----VDELVKVKRIID-ALKWQSQ 592 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~-~i~~d~-----~~~~~~~~~~~~-~l~w~~~ 592 (626)
|.... ...+|.++.|+|||||. +++.-. ...+..+++++. .+.....
T Consensus 251 ~~~~~----~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~ 304 (373)
T 2qm3_A 251 ETLEA----IRAFVGRGIATLKGPRCAGYFGITRRESSLDKWREIQKLLLNEFNVVIT 304 (373)
T ss_dssp SSHHH----HHHHHHHHHHTBCSTTCEEEEEECTTTCCHHHHHHHHHHHHHTSCCEEE
T ss_pred CchHH----HHHHHHHHHHHcccCCeEEEEEEecCcCCHHHHHHHHHHHHHhcCcchh
Confidence 66432 47899999999999994 355422 222366777776 6666553
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=98.13 E-value=2.4e-06 Score=93.19 Aligned_cols=98 Identities=9% Similarity=0.061 Sum_probs=68.9
Q ss_pred CceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHH-------HHh----cc----cceeccccccCCC---C
Q 006905 469 RYRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVI-------YER----GL----VGTYTNWCEAMST---Y 529 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~-------~~r----gl----i~~~~~~~e~~~~---y 529 (626)
.-.+|||+|||+|.+++.|++. +. ..|+++|.++.++..+ .++ |+ +.+.+ +..+.. +
T Consensus 242 ~g~~VLDLGCGsG~la~~LA~~~g~--~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~--gD~~~~~~~~ 317 (433)
T 1u2z_A 242 KGDTFMDLGSGVGNCVVQAALECGC--ALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL--KKSFVDNNRV 317 (433)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCC--SEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEE--SSCSTTCHHH
T ss_pred CCCEEEEeCCCcCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEE--cCcccccccc
Confidence 3567999999999999999875 32 2688899888887776 443 42 22222 123321 2
Q ss_pred ---CCccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh
Q 006905 530 ---PRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV 574 (626)
Q Consensus 530 ---p~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~ 574 (626)
..+||+|.++..+ +. -++..+|.|+.|+|||||.+++.+..
T Consensus 318 ~~~~~~FDvIvvn~~l-~~---~d~~~~L~el~r~LKpGG~lVi~d~f 361 (433)
T 1u2z_A 318 AELIPQCDVILVNNFL-FD---EDLNKKVEKILQTAKVGCKIISLKSL 361 (433)
T ss_dssp HHHGGGCSEEEECCTT-CC---HHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred ccccCCCCEEEEeCcc-cc---ccHHHHHHHHHHhCCCCeEEEEeecc
Confidence 3789999986444 11 25677899999999999999998643
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=3.2e-06 Score=88.14 Aligned_cols=142 Identities=12% Similarity=0.054 Sum_probs=87.8
Q ss_pred ceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhc-------c----cceec-cccccCCCCCCcccee
Q 006905 470 YRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERG-------L----VGTYT-NWCEAMSTYPRTYDLI 536 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rg-------l----i~~~~-~~~e~~~~yp~t~Dli 536 (626)
-++|||+|||.|+++..|++. ++ .+|+.+|.++.+++++.++- + +.+++ |..+.+...+++||+|
T Consensus 78 ~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 78 PKRVLIVGGGEGATLREVLKHPTV--EKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp CCEEEEEECTTSHHHHHHTTSTTC--CEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCeEEEEcCCcCHHHHHHHhcCCC--CEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 478999999999999999987 33 47888999989999887642 1 22222 1111111225899999
Q ss_pred eeccccccC--CC--CCCHHHHHHHhhhhccCCcEEEEEc------ChHHHHHHHHHHHhCCCeeEEeecC-CCCCCcce
Q 006905 537 HADSVFSLY--KD--RCETEDILLEMDRILRPEGGVIFRD------DVDELVKVKRIIDALKWQSQIVDHE-DGPLEREK 605 (626)
Q Consensus 537 h~~~~f~~~--~~--~c~~~~~l~E~dRiLRPgG~~i~~d------~~~~~~~~~~~~~~l~w~~~~~~~e-~~~~~~e~ 605 (626)
.++...... .. .-....++.++.|+|||||.+++.- ..+....+.+.++..--.+...... ....+...
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vP~~~g~~~ 235 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFRYVRSYKNHIPGFFLNFG 235 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCSEEEEEEEEEGGGTEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHHCCceEEEEEecCCCCCeEE
Confidence 997543220 10 0013689999999999999999862 1234555555555553333322110 00012356
Q ss_pred EEEEEecc
Q 006905 606 LLFAVKLY 613 (626)
Q Consensus 606 ~l~~~K~~ 613 (626)
+++|.|.+
T Consensus 236 ~~~as~~~ 243 (314)
T 1uir_A 236 FLLASDAF 243 (314)
T ss_dssp EEEEESSS
T ss_pred EEEEECCC
Confidence 78898874
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.12 E-value=1.4e-05 Score=81.41 Aligned_cols=129 Identities=11% Similarity=0.078 Sum_probs=82.8
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc------c----cceeccccccCCCCCCccceeeec
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG------L----VGTYTNWCEAMSTYPRTYDLIHAD 539 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg------l----i~~~~~~~e~~~~yp~t~Dlih~~ 539 (626)
-++|||+|||.|++++.+++.+ ..|+.+|.++.+++++.++- + +.+.+ +....|+.+||+|.++
T Consensus 73 ~~~VL~iG~G~G~~~~~ll~~~---~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~---~D~~~~~~~fD~Ii~d 146 (262)
T 2cmg_A 73 LKEVLIVDGFDLELAHQLFKYD---THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK---QLLDLDIKKYDLIFCL 146 (262)
T ss_dssp CCEEEEESSCCHHHHHHHTTSS---CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEES---SGGGSCCCCEEEEEES
T ss_pred CCEEEEEeCCcCHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEe---chHHHHHhhCCEEEEC
Confidence 4789999999999999998875 47888898888888776541 1 22222 2222334889999985
Q ss_pred cccccCCCCCCHHHHHHHhhhhccCCcEEEEEc-C----hHHHHHHHHHHHhCCCeeEEeecCCCCC-CcceEEEEEecc
Q 006905 540 SVFSLYKDRCETEDILLEMDRILRPEGGVIFRD-D----VDELVKVKRIIDALKWQSQIVDHEDGPL-EREKLLFAVKLY 613 (626)
Q Consensus 540 ~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d-~----~~~~~~~~~~~~~l~w~~~~~~~e~~~~-~~e~~l~~~K~~ 613 (626)
. -+....+.++.|+|||||.+++.. . .+....+.+.++.. +.........-|. +...+++|.|.+
T Consensus 147 ~--------~dp~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~~~~~~~~vP~~g~~~~~~as~~~ 217 (262)
T 2cmg_A 147 Q--------EPDIHRIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGGV-FSVAMPFVAPLRILSNKGYIYASFKT 217 (262)
T ss_dssp S--------CCCHHHHHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHTT-CSEEEEECCTTCTTCCEEEEEEESSC
T ss_pred C--------CChHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHh-CCceEEEEEccCCCcccEEEEeeCCC
Confidence 1 122448999999999999999952 1 12334444444443 3333223332232 234577888874
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.10 E-value=3.5e-06 Score=90.77 Aligned_cols=122 Identities=18% Similarity=0.204 Sum_probs=80.7
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cccc-eec-cccccCCCCCCccceeeecccc-
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GLVG-TYT-NWCEAMSTYPRTYDLIHADSVF- 542 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gli~-~~~-~~~e~~~~yp~t~Dlih~~~~f- 542 (626)
-.+|||+|||+|+|+.+++..+. .|+.+|.++.+++.+.++ |+-. +.+ |..+.+..++..||+|.++--.
T Consensus 215 g~~VLDlg~GtG~~sl~~a~~ga---~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f 291 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAARKGA---YALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL 291 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred CCeEEEcccchhHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence 35799999999999999999876 489999999999987765 3321 222 2222222335459999986432
Q ss_pred ccCCC-----CCCHHHHHHHhhhhccCCcEEEEEcC------hHHHHHHHHHHHhCCCeeEEe
Q 006905 543 SLYKD-----RCETEDILLEMDRILRPEGGVIFRDD------VDELVKVKRIIDALKWQSQIV 594 (626)
Q Consensus 543 ~~~~~-----~c~~~~~l~E~dRiLRPgG~~i~~d~------~~~~~~~~~~~~~l~w~~~~~ 594 (626)
..... ..+...++.++-|+|||||++++... .+....+++.+.....+.++.
T Consensus 292 ~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a~~~~g~~~~i~ 354 (393)
T 4dmg_A 292 VKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLEVARRAAADLGRRLRVH 354 (393)
T ss_dssp CSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEE
Confidence 11110 01334688899999999999996532 234556666666666555544
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.09 E-value=2.6e-06 Score=83.78 Aligned_cols=92 Identities=17% Similarity=0.141 Sum_probs=65.6
Q ss_pred ceeEEeccCchhhHhhhhhCC-Ce----EEEEeccCccCcccHHHHHHhcc-----------cceec-cccccCCCCC--
Q 006905 470 YRNILDMNAHLGGFAAALIDF-PV----WVMNVVPAEAKINTLGVIYERGL-----------VGTYT-NWCEAMSTYP-- 530 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~-~v----~~mnv~~~~~~~~~l~~~~~rgl-----------i~~~~-~~~e~~~~yp-- 530 (626)
-.+|||+|||.|.+++.|++. +. +...|+.+|.++.++..+.++.- +.+.+ |..+ .+|
T Consensus 85 ~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~---~~~~~ 161 (227)
T 1r18_A 85 GARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK---GYPPN 161 (227)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG---CCGGG
T ss_pred CCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc---CCCcC
Confidence 457999999999999999874 20 00168888998889988876531 22232 2222 344
Q ss_pred CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 531 RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 531 ~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
.+||+|++...+.+ ++.++.|+|||||.+++.-.
T Consensus 162 ~~fD~I~~~~~~~~---------~~~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 162 APYNAIHVGAAAPD---------TPTELINQLASGGRLIVPVG 195 (227)
T ss_dssp CSEEEEEECSCBSS---------CCHHHHHTEEEEEEEEEEES
T ss_pred CCccEEEECCchHH---------HHHHHHHHhcCCCEEEEEEe
Confidence 78999999776654 34789999999999999753
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.09 E-value=3.9e-06 Score=90.12 Aligned_cols=122 Identities=16% Similarity=0.105 Sum_probs=80.4
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc----cceeccccccC-CCC---CCccceeee
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL----VGTYTNWCEAM-STY---PRTYDLIHA 538 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl----i~~~~~~~e~~-~~y---p~t~Dlih~ 538 (626)
.+|||+|||+|+|+.++++.+. -.|+.+|.++.+++.+.++ |+ +.+++.=+..+ ..+ ...||+|.+
T Consensus 222 ~~VLDl~cG~G~~sl~la~~g~--~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~ 299 (396)
T 3c0k_A 222 KRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_dssp CEEEEESCTTCSHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEeeccCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEE
Confidence 5799999999999999998863 3789999998898887664 33 12222111111 111 368999998
Q ss_pred cccccc------CCCCCCHHHHHHHhhhhccCCcEEEEEcCh------HHHHHHHHHHHhCCCeeEEe
Q 006905 539 DSVFSL------YKDRCETEDILLEMDRILRPEGGVIFRDDV------DELVKVKRIIDALKWQSQIV 594 (626)
Q Consensus 539 ~~~f~~------~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~------~~~~~~~~~~~~l~w~~~~~ 594 (626)
+--+.. ......+..++.++-++|+|||.++++... +....+++.+.....+..+.
T Consensus 300 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i 367 (396)
T 3c0k_A 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFI 367 (396)
T ss_dssp CCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 643211 111135678999999999999999997432 23455555666665554433
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.08 E-value=9.1e-07 Score=86.71 Aligned_cols=93 Identities=13% Similarity=0.055 Sum_probs=66.0
Q ss_pred ceeEEeccCchhhHhhhhhCCCe----EEEEeccCccCcccHHHHHHh----cc-------cceeccccccCCCC-----
Q 006905 470 YRNILDMNAHLGGFAAALIDFPV----WVMNVVPAEAKINTLGVIYER----GL-------VGTYTNWCEAMSTY----- 529 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v----~~mnv~~~~~~~~~l~~~~~r----gl-------i~~~~~~~e~~~~y----- 529 (626)
-.+|||+|||.|.+++.|++..- -..+|+.+|.++.+++.+.++ |+ +.+.+. .....+
T Consensus 81 ~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~--d~~~~~~~~~~ 158 (227)
T 2pbf_A 81 GSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHK--NIYQVNEEEKK 158 (227)
T ss_dssp TCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEEC--CGGGCCHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEEC--ChHhcccccCc
Confidence 45899999999999999986420 002688899998999888776 31 222221 111122
Q ss_pred -CCccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 530 -PRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 530 -p~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
+.+||+|++...+.+ ++.++.++|||||.+++.-.
T Consensus 159 ~~~~fD~I~~~~~~~~---------~~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 159 ELGLFDAIHVGASASE---------LPEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HHCCEEEEEECSBBSS---------CCHHHHHHEEEEEEEEEEEE
T ss_pred cCCCcCEEEECCchHH---------HHHHHHHhcCCCcEEEEEEc
Confidence 278999999776653 45788999999999999754
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=9.3e-07 Score=93.37 Aligned_cols=95 Identities=15% Similarity=0.267 Sum_probs=67.4
Q ss_pred ceeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHHHhcccceeccccccCCCCCCccceeeeccccccCCC
Q 006905 470 YRNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYPRTYDLIHADSVFSLYKD 547 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~yp~t~Dlih~~~~f~~~~~ 547 (626)
..+|||+|||.|.++.+|+++ ++ .++.+|.+ .+++.+.+..-+.... ...+..+| .||+|.+..+|.++.+
T Consensus 194 ~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~-~~~~~a~~~~~v~~~~--~d~~~~~~-~~D~v~~~~vlh~~~d 266 (358)
T 1zg3_A 194 LESLVDVGGGTGGVTKLIHEIFPHL---KCTVFDQP-QVVGNLTGNENLNFVG--GDMFKSIP-SADAVLLKWVLHDWND 266 (358)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTS---EEEEEECH-HHHSSCCCCSSEEEEE--CCTTTCCC-CCSEEEEESCGGGSCH
T ss_pred CCEEEEECCCcCHHHHHHHHHCCCC---eEEEeccH-HHHhhcccCCCcEEEe--CccCCCCC-CceEEEEcccccCCCH
Confidence 578999999999999999875 33 45566764 6665544311133322 11223455 5999999999998874
Q ss_pred CCCHHHHHHHhhhhccC---CcEEEEEc
Q 006905 548 RCETEDILLEMDRILRP---EGGVIFRD 572 (626)
Q Consensus 548 ~c~~~~~l~E~dRiLRP---gG~~i~~d 572 (626)
. ....+|.++.|+||| ||+++|.|
T Consensus 267 ~-~~~~~l~~~~~~L~p~~~gG~l~i~e 293 (358)
T 1zg3_A 267 E-QSLKILKNSKEAISHKGKDGKVIIID 293 (358)
T ss_dssp H-HHHHHHHHHHHHTGGGGGGCEEEEEE
T ss_pred H-HHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence 3 234899999999999 99999975
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.06 E-value=9.8e-06 Score=85.24 Aligned_cols=143 Identities=13% Similarity=0.145 Sum_probs=93.0
Q ss_pred CCceeEEeccCchhhHhhhhhCCCe----EEEEeccCccCcccHHHHHHh----cc-cceeccccccCCCCC-Cccceee
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPV----WVMNVVPAEAKINTLGVIYER----GL-VGTYTNWCEAMSTYP-RTYDLIH 537 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v----~~mnv~~~~~~~~~l~~~~~r----gl-i~~~~~~~e~~~~yp-~t~Dlih 537 (626)
....+|||.|||+|+|...+++..- -..+|.++|.++.++.++..+ |+ +.+++ +..+...+ ..||+|.
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~--~D~l~~~~~~~fD~Ii 206 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLH--QDGLANLLVDPVDVVI 206 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEE--SCTTSCCCCCCEEEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEE--CCCCCccccCCccEEE
Confidence 4567899999999999988875420 014899999998999888764 44 22222 22344444 8999999
Q ss_pred eccccccCCCC--------------CCHH-HHHHHhhhhccCCcEEEEEcC-----hHHHHHHHHHHHhCCCeeEEeecC
Q 006905 538 ADSVFSLYKDR--------------CETE-DILLEMDRILRPEGGVIFRDD-----VDELVKVKRIIDALKWQSQIVDHE 597 (626)
Q Consensus 538 ~~~~f~~~~~~--------------c~~~-~~l~E~dRiLRPgG~~i~~d~-----~~~~~~~~~~~~~l~w~~~~~~~e 597 (626)
++--|++.... -+.. .++.++-+.|+|||.+++.-+ .+....+++.+..-.|-..++...
T Consensus 207 ~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~~~~~~~ii~lp 286 (344)
T 2f8l_A 207 SDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHIEGIIKLP 286 (344)
T ss_dssp EECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEEEEEEECC
T ss_pred ECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHHhCCeEEEeeeCC
Confidence 99887654210 1122 478999999999999988652 233466776655555533333322
Q ss_pred C----CCCCcceEEEEEec
Q 006905 598 D----GPLEREKLLFAVKL 612 (626)
Q Consensus 598 ~----~~~~~e~~l~~~K~ 612 (626)
. +...+.-|+|.+|.
T Consensus 287 ~~~F~~~~~~~~i~vl~k~ 305 (344)
T 2f8l_A 287 ETLFKSEQARKSILILEKA 305 (344)
T ss_dssp GGGSCC-CCCEEEEEEEEC
T ss_pred hhhccCCCCceEEEEEECC
Confidence 1 22245678888874
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.05 E-value=8.7e-06 Score=86.68 Aligned_cols=94 Identities=12% Similarity=0.076 Sum_probs=64.8
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCC--CCC-------------
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLP--YPS------------- 273 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lp--f~d------------- 273 (626)
+.+|||+|||+|.++..|++. .|+++|+++..+..+.. .+..+++ .+.+..+|+..+. +..
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~-n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~ 292 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQY-NIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLK 292 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHH-HHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGG
T ss_pred CCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHH-HHHHcCCCceEEEECCHHHHHHHHhhccccccccccccc
Confidence 457999999999999999885 68999998866654443 3445565 4667777754431 111
Q ss_pred -CCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 274 -RAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 274 -~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
.+||+|++..... .+..++.++|+++|.+++..
T Consensus 293 ~~~fD~Vv~dPPr~-------g~~~~~~~~l~~~g~ivyvs 326 (369)
T 3bt7_A 293 SYQCETIFVDPPRS-------GLDSETEKMVQAYPRILYIS 326 (369)
T ss_dssp GCCEEEEEECCCTT-------CCCHHHHHHHTTSSEEEEEE
T ss_pred cCCCCEEEECcCcc-------ccHHHHHHHHhCCCEEEEEE
Confidence 3799999865321 23456777778888888764
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=4.9e-06 Score=89.00 Aligned_cols=122 Identities=18% Similarity=0.127 Sum_probs=81.5
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceeccccccCC-CC---CCccceeeec
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYTNWCEAMS-TY---PRTYDLIHAD 539 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~~~~e~~~-~y---p~t~Dlih~~ 539 (626)
-.+|||+|||+|+|+.+++.. ..+|+.+|.++.+++.+.+. |+ +.+++.=++.+. .+ +.+||+|.++
T Consensus 210 ~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 210 GERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp EEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 468999999999999999887 35899999999999887765 33 233332111111 11 4689999985
Q ss_pred cccccCCCC------CCHHHHHHHhhhhccCCcEEEEEcCh------HHHHHHHHHHHhCCCeeEEe
Q 006905 540 SVFSLYKDR------CETEDILLEMDRILRPEGGVIFRDDV------DELVKVKRIIDALKWQSQIV 594 (626)
Q Consensus 540 ~~f~~~~~~------c~~~~~l~E~dRiLRPgG~~i~~d~~------~~~~~~~~~~~~l~w~~~~~ 594 (626)
--....... -....++.++-++|+|||.++++... .....+++.+.....+..+.
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i 353 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVV 353 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 432111111 12356899999999999999997432 23455666666666655544
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=5.8e-06 Score=88.69 Aligned_cols=118 Identities=13% Similarity=0.050 Sum_probs=78.1
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----ccc----ceecccccc-CCCC---CCccceeee
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GLV----GTYTNWCEA-MSTY---PRTYDLIHA 538 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gli----~~~~~~~e~-~~~y---p~t~Dlih~ 538 (626)
.+|||+|||+|+|+.++++.+. -.|+.+|.++.+++.+.+. |+- .+++.=+.. +... ..+||+|.+
T Consensus 214 ~~VLDl~cGtG~~sl~la~~ga--~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~ 291 (385)
T 2b78_A 214 KTVLNLFSYTAAFSVAAAMGGA--MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII 291 (385)
T ss_dssp CEEEEETCTTTHHHHHHHHTTB--SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEeeccCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEE
Confidence 5799999999999999998764 2688999999999987764 331 122211111 1111 248999998
Q ss_pred cccccc-----CCC-CCCHHHHHHHhhhhccCCcEEEEEcCh------HHHHHHHHHHHhCCCe
Q 006905 539 DSVFSL-----YKD-RCETEDILLEMDRILRPEGGVIFRDDV------DELVKVKRIIDALKWQ 590 (626)
Q Consensus 539 ~~~f~~-----~~~-~c~~~~~l~E~dRiLRPgG~~i~~d~~------~~~~~~~~~~~~l~w~ 590 (626)
+--... ..+ .-.+..++.++.++|+|||.++++... .....+++.++...++
T Consensus 292 DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~ 355 (385)
T 2b78_A 292 DPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHT 355 (385)
T ss_dssp CCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCE
T ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCc
Confidence 643321 110 012345788889999999999997432 3456666777777776
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=1.6e-05 Score=85.30 Aligned_cols=102 Identities=16% Similarity=0.150 Sum_probs=67.4
Q ss_pred CCEEEEeCCCCchHHHHHhhC---------------------CcEEEeCCccchHHHHHHHH-------HHcC--CCeEE
Q 006905 212 IRTAIDTGCGVASWGAYLLSR---------------------NIITMSFAPRDTHEAQVQFA-------LERG--VPALI 261 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~---------------------~V~avdis~~dls~a~i~~A-------~erg--~~~~~ 261 (626)
.-+|+|+||++|..+..+... .|...|+...|.+.-...+. .+.| .+..+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 468999999999777665443 24556776666644333222 2222 22344
Q ss_pred EEcc---cccCCCCCCCeeEEEeccccccccccHH---------------------------------------HHHHHH
Q 006905 262 GVLA---AERLPYPSRAFDMAHCSRCLIPWNQFGG---------------------------------------IYLIEV 299 (626)
Q Consensus 262 ~v~d---~~~Lpf~d~sFDlV~~~~~l~h~~~~~~---------------------------------------~~L~Ei 299 (626)
..+. ...-.||+++||+|+++.+| ||..+.. .+|+-.
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aL-HWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~R 211 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCL-HWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIH 211 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCT-TBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEeccee-eecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 33456899999999999999 8854331 125666
Q ss_pred HhcccCCeEEEEEeC
Q 006905 300 DRVLRPGGYWILSGP 314 (626)
Q Consensus 300 ~RvLKPGG~lvis~p 314 (626)
.|.|+|||.++++..
T Consensus 212 a~eL~pGG~mvl~~~ 226 (384)
T 2efj_A 212 SEELISRGRMLLTFI 226 (384)
T ss_dssp HHHEEEEEEEEEEEE
T ss_pred HHHhccCCeEEEEEe
Confidence 899999999999864
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=97.94 E-value=3.6e-05 Score=82.57 Aligned_cols=101 Identities=15% Similarity=0.020 Sum_probs=71.3
Q ss_pred CCEEEEeCCCCchHHHHHhhC------------------------------------------CcEEEeCCccchHHHHH
Q 006905 212 IRTAIDTGCGVASWGAYLLSR------------------------------------------NIITMSFAPRDTHEAQV 249 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~------------------------------------------~V~avdis~~dls~a~i 249 (626)
+.++||++||+|.++..++.. .|+++|+++.++..+..
T Consensus 196 ~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar~ 275 (385)
T 3ldu_A 196 GRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIARE 275 (385)
T ss_dssp TSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHHH
T ss_pred CCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHH
Confidence 458999999999888776543 48999998866655444
Q ss_pred HHHHHcCC--CeEEEEcccccCCCCCCCeeEEEeccccccccc---cHHHHHHHHHhcccC--CeEEEEEeC
Q 006905 250 QFALERGV--PALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQ---FGGIYLIEVDRVLRP--GGYWILSGP 314 (626)
Q Consensus 250 ~~A~erg~--~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~---~~~~~L~Ei~RvLKP--GG~lvis~p 314 (626)
+ +...|+ .+.+.+.|...++.+ .+||+|+++..+..-.. +...++.++.++||+ ||.+++..+
T Consensus 276 N-a~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 345 (385)
T 3ldu_A 276 N-AEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITS 345 (385)
T ss_dssp H-HHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEES
T ss_pred H-HHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEEC
Confidence 3 334465 477888888888764 58999999886532221 224567777777776 888777654
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.93 E-value=4.5e-05 Score=82.14 Aligned_cols=101 Identities=15% Similarity=0.016 Sum_probs=69.9
Q ss_pred CCEEEEeCCCCchHHHHHhhC------------------------------------------CcEEEeCCccchHHHHH
Q 006905 212 IRTAIDTGCGVASWGAYLLSR------------------------------------------NIITMSFAPRDTHEAQV 249 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~------------------------------------------~V~avdis~~dls~a~i 249 (626)
+..+||.+||+|.++..++.. .++++|+++.++..+..
T Consensus 202 ~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar~ 281 (393)
T 3k0b_A 202 DRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQ 281 (393)
T ss_dssp TSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHH
T ss_pred CCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHHH
Confidence 458999999999988766542 28999998866655444
Q ss_pred HHHHHcCCC--eEEEEcccccCCCCCCCeeEEEeccccccccc---cHHHHHHHHHhcccC--CeEEEEEeC
Q 006905 250 QFALERGVP--ALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQ---FGGIYLIEVDRVLRP--GGYWILSGP 314 (626)
Q Consensus 250 ~~A~erg~~--~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~---~~~~~L~Ei~RvLKP--GG~lvis~p 314 (626)
.+...|+. +.+.+.|+..++.+ .+||+|+++..+..... ....+..++.++||+ ||.+++...
T Consensus 282 -Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 351 (393)
T 3k0b_A 282 -NAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTS 351 (393)
T ss_dssp -HHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred -HHHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 34445653 77888898888765 48999999975422221 124456666667766 888877654
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=3.4e-05 Score=79.02 Aligned_cols=85 Identities=13% Similarity=0.100 Sum_probs=62.6
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCC
Q 006905 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYP 272 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~ 272 (626)
...++.|.+.+.... + +|||||||+|.++..|+++ .|+++|+++.++.....+.. +..+.+..+|+..++++
T Consensus 33 ~~i~~~Iv~~~~~~~--~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~---~~~v~vi~~D~l~~~~~ 106 (271)
T 3fut_A 33 EAHLRRIVEAARPFT--G-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLS---GLPVRLVFQDALLYPWE 106 (271)
T ss_dssp HHHHHHHHHHHCCCC--S-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTT---TSSEEEEESCGGGSCGG
T ss_pred HHHHHHHHHhcCCCC--C-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC---CCCEEEEECChhhCChh
Confidence 345666777765443 4 7999999999999999987 78999998866554333222 23577888898888876
Q ss_pred CC-CeeEEEecccc
Q 006905 273 SR-AFDMAHCSRCL 285 (626)
Q Consensus 273 d~-sFDlV~~~~~l 285 (626)
+. .||.|+++...
T Consensus 107 ~~~~~~~iv~NlPy 120 (271)
T 3fut_A 107 EVPQGSLLVANLPY 120 (271)
T ss_dssp GSCTTEEEEEEECS
T ss_pred hccCccEEEecCcc
Confidence 43 69999998854
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.92 E-value=2.2e-05 Score=85.78 Aligned_cols=118 Identities=12% Similarity=0.246 Sum_probs=77.0
Q ss_pred ceeEEeccCchhhHhhhhhCC--C-eEEEEeccCccCcccHHHHHHh----cc--cceec-cccccCCCCC-Cccceeee
Q 006905 470 YRNILDMNAHLGGFAAALIDF--P-VWVMNVVPAEAKINTLGVIYER----GL--VGTYT-NWCEAMSTYP-RTYDLIHA 538 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~--~-v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~-~~~e~~~~yp-~t~Dlih~ 538 (626)
-..|||+|||.|+++..|++. + . .|+.+|.++.++..+.++ |+ +.+.+ |..+.-..++ .+||+|.+
T Consensus 260 g~~VLDlgaG~G~~t~~la~~~~~~~---~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~ 336 (450)
T 2yxl_A 260 GETVVDLAAAPGGKTTHLAELMKNKG---KIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL 336 (450)
T ss_dssp TCEEEESSCTTCHHHHHHHHHTTTCS---EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred cCEEEEeCCCccHHHHHHHHHcCCCC---EEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence 357999999999999999863 2 2 588999998899888776 55 33333 2221111255 78999996
Q ss_pred cc------ccccCCC------CCCH-------HHHHHHhhhhccCCcEEEEEc----ChHHHHHHHHHHHhC-CCe
Q 006905 539 DS------VFSLYKD------RCET-------EDILLEMDRILRPEGGVIFRD----DVDELVKVKRIIDAL-KWQ 590 (626)
Q Consensus 539 ~~------~f~~~~~------~c~~-------~~~l~E~dRiLRPgG~~i~~d----~~~~~~~~~~~~~~l-~w~ 590 (626)
+- ++....+ .-++ ..+|.++.++|||||.+++++ ..+....++.+++.. .|+
T Consensus 337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~~~~~~~ 412 (450)
T 2yxl_A 337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVHPEFK 412 (450)
T ss_dssp ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCSSCE
T ss_pred cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCE
Confidence 42 2221110 1122 468999999999999999864 223345566666654 344
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=2.2e-05 Score=84.10 Aligned_cols=131 Identities=13% Similarity=0.168 Sum_probs=84.5
Q ss_pred eeEEeccCchhhHhhhhhCC---CeEEEEeccCccCcccHHHHHHhcccceeccccccCCCCC--CccceeeeccccccC
Q 006905 471 RNILDMNAHLGGFAAALIDF---PVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYP--RTYDLIHADSVFSLY 545 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~---~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~yp--~t~Dlih~~~~f~~~ 545 (626)
.+|||+|||+|+|+.+++++ .. +|.++|.++.+++.+ . . +.+++ .++..++ ..||+|.++--|...
T Consensus 41 ~~vLD~gcGtG~~~~~~~~~~~~~~---~i~gvDi~~~~~~~a-~-~-~~~~~---~D~~~~~~~~~fD~Ii~NPPy~~~ 111 (421)
T 2ih2_A 41 GRVLEPACAHGPFLRAFREAHGTAY---RFVGVEIDPKALDLP-P-W-AEGIL---ADFLLWEPGEAFDLILGNPPYGIV 111 (421)
T ss_dssp CEEEEETCTTCHHHHHHHHHHCSCS---EEEEEESCTTTCCCC-T-T-EEEEE---SCGGGCCCSSCEEEEEECCCCCCB
T ss_pred CEEEECCCCChHHHHHHHHHhCCCC---eEEEEECCHHHHHhC-C-C-CcEEe---CChhhcCccCCCCEEEECcCccCc
Confidence 38999999999999999864 23 788888888887766 1 1 23333 3333443 789999997544432
Q ss_pred CCC-------------------------CC-HHHHHHHhhhhccCCcEEEEEcChH-----HHHHHHHHHHhCCCeeEEe
Q 006905 546 KDR-------------------------CE-TEDILLEMDRILRPEGGVIFRDDVD-----ELVKVKRIIDALKWQSQIV 594 (626)
Q Consensus 546 ~~~-------------------------c~-~~~~l~E~dRiLRPgG~~i~~d~~~-----~~~~~~~~~~~l~w~~~~~ 594 (626)
... -+ ...+|..+.++|+|||.+++--+.. ...++++.+....+ ..+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l~~~~~-~~i~ 190 (421)
T 2ih2_A 112 GEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGK-TSVY 190 (421)
T ss_dssp SCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHSE-EEEE
T ss_pred ccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHHHHHHHHHhcCC-eEEE
Confidence 220 11 1256788999999999988864432 45677887666666 3333
Q ss_pred ecC---CCCCCcceEEEEEe
Q 006905 595 DHE---DGPLEREKLLFAVK 611 (626)
Q Consensus 595 ~~e---~~~~~~e~~l~~~K 611 (626)
+.. .+...+--|++.+|
T Consensus 191 ~l~~~F~~~~~~~~il~~~k 210 (421)
T 2ih2_A 191 YLGEVFPQKKVSAVVIRFQK 210 (421)
T ss_dssp EEESCSTTCCCCEEEEEEES
T ss_pred ECCCCCCCCCccEEEEEEEe
Confidence 321 22223456677777
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.91 E-value=1.3e-05 Score=88.65 Aligned_cols=116 Identities=15% Similarity=0.209 Sum_probs=74.5
Q ss_pred ceeEEeccCchhhHhhhhhCC---CeEEEEeccCccCcccHHHHHHh----cc--cceeccccccCCC-CCCccceeeec
Q 006905 470 YRNILDMNAHLGGFAAALIDF---PVWVMNVVPAEAKINTLGVIYER----GL--VGTYTNWCEAMST-YPRTYDLIHAD 539 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~---~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~~~~e~~~~-yp~t~Dlih~~ 539 (626)
-..|||||||.|+.+..|++. .- .|+.+|.++.++..+.++ |+ +.+.+.=...+.. .+.+||.|.++
T Consensus 118 g~~VLDl~aGpG~kt~~lA~~~~~~g---~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D 194 (479)
T 2frx_A 118 PQRVMDVAAAPGSKTTQISARMNNEG---AILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLD 194 (479)
T ss_dssp CSEEEESSCTTSHHHHHHHHHTTTCS---EEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEE
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEEC
Confidence 357999999999999998864 12 488999999999888765 44 2333321122222 35799999974
Q ss_pred ------cccccCCCC---CC----------HHHHHHHhhhhccCCcEEEEEc----ChHHHHHHHHHHHhCC
Q 006905 540 ------SVFSLYKDR---CE----------TEDILLEMDRILRPEGGVIFRD----DVDELVKVKRIIDALK 588 (626)
Q Consensus 540 ------~~f~~~~~~---c~----------~~~~l~E~dRiLRPgG~~i~~d----~~~~~~~~~~~~~~l~ 588 (626)
++|....+. -. ...+|.++-|+|||||.++++. ..+.-..|+.+++...
T Consensus 195 ~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~Ene~vv~~~l~~~~ 266 (479)
T 2frx_A 195 APCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYP 266 (479)
T ss_dssp CCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTTTHHHHHHHHHHST
T ss_pred CCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcccCHHHHHHHHHHCC
Confidence 333321110 00 1368999999999999999963 1222334455555443
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=97.90 E-value=1.2e-05 Score=86.37 Aligned_cols=124 Identities=11% Similarity=0.056 Sum_probs=81.0
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc---cceec-cccccCCCC---CCccceeee
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL---VGTYT-NWCEAMSTY---PRTYDLIHA 538 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~-~~~e~~~~y---p~t~Dlih~ 538 (626)
-.+|||+|||+|+|+..+++.+. -+|+.+|.++.++..+.++ |+ +..++ |..+.+..+ ..+||+|.+
T Consensus 218 ~~~VLDl~~G~G~~~~~la~~g~--~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 218 GDRVLDVFTYTGGFAIHAAIAGA--DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TCEEEETTCTTTHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 35899999999999999998853 3689999998888877654 32 22232 211111111 368999998
Q ss_pred ccccccCCCC------CCHHHHHHHhhhhccCCcEEEEEcCh------HHHHHHHHHHHhCCCeeEEee
Q 006905 539 DSVFSLYKDR------CETEDILLEMDRILRPEGGVIFRDDV------DELVKVKRIIDALKWQSQIVD 595 (626)
Q Consensus 539 ~~~f~~~~~~------c~~~~~l~E~dRiLRPgG~~i~~d~~------~~~~~~~~~~~~l~w~~~~~~ 595 (626)
+--....... .+...++.++-++|+|||.+++.... +....+.+.+.....+.++..
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~ 364 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKMLE 364 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTEEEEESS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 5432111100 23457899999999999999887432 234455566666666666554
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.88 E-value=2.3e-05 Score=87.80 Aligned_cols=116 Identities=14% Similarity=0.084 Sum_probs=77.0
Q ss_pred HHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhh----------------------CCcEEEeCCccchHHHHHHHHH
Q 006905 196 AYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLS----------------------RNIITMSFAPRDTHEAQVQFAL 253 (626)
Q Consensus 196 ~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~----------------------~~V~avdis~~dls~a~i~~A~ 253 (626)
..++.+.+++... .+.+|||.+||+|.|...+++ ..+.++|+++....-+..+..
T Consensus 156 ~iv~~mv~~l~p~--~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~- 232 (541)
T 2ar0_A 156 PLIKTIIHLLKPQ--PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL- 232 (541)
T ss_dssp HHHHHHHHHHCCC--TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhccC--CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHH-
Confidence 3455566666433 345899999999998876653 258899997755444333332
Q ss_pred HcCCC------eEEEEcccccCC-CCCCCeeEEEeccccccccc-------------cHHHHHHHHHhcccCCeEEEEEe
Q 006905 254 ERGVP------ALIGVLAAERLP-YPSRAFDMAHCSRCLIPWNQ-------------FGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 254 erg~~------~~~~v~d~~~Lp-f~d~sFDlV~~~~~l~h~~~-------------~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
.+++. ..+..+|+...+ .....||+|+++..+..... ....++..+.+.|||||++++..
T Consensus 233 l~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~ 312 (541)
T 2ar0_A 233 LHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV 312 (541)
T ss_dssp TTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEe
Confidence 23443 456666654432 34568999999876633211 12478999999999999999986
Q ss_pred C
Q 006905 314 P 314 (626)
Q Consensus 314 p 314 (626)
|
T Consensus 313 p 313 (541)
T 2ar0_A 313 P 313 (541)
T ss_dssp E
T ss_pred c
Confidence 5
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=97.88 E-value=9e-05 Score=79.54 Aligned_cols=101 Identities=13% Similarity=0.046 Sum_probs=71.4
Q ss_pred CCEEEEeCCCCchHHHHHhhC------------------------------------------CcEEEeCCccchHHHHH
Q 006905 212 IRTAIDTGCGVASWGAYLLSR------------------------------------------NIITMSFAPRDTHEAQV 249 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~------------------------------------------~V~avdis~~dls~a~i 249 (626)
+..+||.+||+|.++..++.. .++++|+++.++..+..
T Consensus 195 ~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~ 274 (384)
T 3ldg_A 195 DKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIARK 274 (384)
T ss_dssp TSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHH
T ss_pred CCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHHH
Confidence 458999999999988766542 28999998866654443
Q ss_pred HHHHHcCCC--eEEEEcccccCCCCCCCeeEEEeccccccccc---cHHHHHHHHHhcccC--CeEEEEEeC
Q 006905 250 QFALERGVP--ALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQ---FGGIYLIEVDRVLRP--GGYWILSGP 314 (626)
Q Consensus 250 ~~A~erg~~--~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~---~~~~~L~Ei~RvLKP--GG~lvis~p 314 (626)
.+...|+. +.+...|+..++.++ +||+|+++..+..-.. +...++.++.+.||+ ||.+++..+
T Consensus 275 -Na~~~gl~~~I~~~~~D~~~l~~~~-~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 344 (384)
T 3ldg_A 275 -NAREVGLEDVVKLKQMRLQDFKTNK-INGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTN 344 (384)
T ss_dssp -HHHHTTCTTTEEEEECCGGGCCCCC-CSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred -HHHHcCCCCceEEEECChHHCCccC-CcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEEC
Confidence 34455653 778888988887654 8999999875422221 225667777777776 888888754
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=97.86 E-value=4.1e-05 Score=77.63 Aligned_cols=85 Identities=15% Similarity=0.146 Sum_probs=58.8
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCC
Q 006905 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYP 272 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~ 272 (626)
...++.|.+.+.... +.+|||||||+|.++..|+++ .++++|+++.++..+..+.. ....+.+..+|+..++++
T Consensus 15 ~~i~~~iv~~~~~~~--~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~--~~~~v~~i~~D~~~~~~~ 90 (255)
T 3tqs_A 15 SFVLQKIVSAIHPQK--TDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYN--QQKNITIYQNDALQFDFS 90 (255)
T ss_dssp HHHHHHHHHHHCCCT--TCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHT--TCTTEEEEESCTTTCCGG
T ss_pred HHHHHHHHHhcCCCC--cCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHh--hCCCcEEEEcchHhCCHH
Confidence 345566777765544 458999999999999999987 68888887754443322221 134577888898888765
Q ss_pred C----CCeeEEEeccc
Q 006905 273 S----RAFDMAHCSRC 284 (626)
Q Consensus 273 d----~sFDlV~~~~~ 284 (626)
+ +.|| |+++..
T Consensus 91 ~~~~~~~~~-vv~NlP 105 (255)
T 3tqs_A 91 SVKTDKPLR-VVGNLP 105 (255)
T ss_dssp GSCCSSCEE-EEEECC
T ss_pred HhccCCCeE-EEecCC
Confidence 3 5688 667663
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=97.84 E-value=2.5e-05 Score=84.76 Aligned_cols=114 Identities=18% Similarity=0.282 Sum_probs=75.1
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc-cceeccccccCCC----CC-Cccceeeec
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL-VGTYTNWCEAMST----YP-RTYDLIHAD 539 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl-i~~~~~~~e~~~~----yp-~t~Dlih~~ 539 (626)
-.+|||+|||.|+++..|++..-- ..|+.+|.++.++..+.++ |+ +.+++ ..+.. ++ .+||+|.++
T Consensus 247 g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~---~D~~~~~~~~~~~~fD~Vl~D 322 (429)
T 1sqg_A 247 GEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGMKATVKQ---GDGRYPSQWCGEQQFDRILLD 322 (429)
T ss_dssp TCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTCCCEEEE---CCTTCTHHHHTTCCEEEEEEE
T ss_pred cCeEEEECCCchHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHHcCCCeEEEe---CchhhchhhcccCCCCEEEEe
Confidence 457999999999999999875200 3689999998999988776 44 22222 33333 34 789999864
Q ss_pred cccc---cCCCCCC---------H-------HHHHHHhhhhccCCcEEEEEc----ChHHHHHHHHHHHhC
Q 006905 540 SVFS---LYKDRCE---------T-------EDILLEMDRILRPEGGVIFRD----DVDELVKVKRIIDAL 587 (626)
Q Consensus 540 ~~f~---~~~~~c~---------~-------~~~l~E~dRiLRPgG~~i~~d----~~~~~~~~~~~~~~l 587 (626)
--.+ .....-+ + ..+|.++-++|||||+++++. ..+....++.+++..
T Consensus 323 ~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v~~~l~~~ 393 (429)
T 1sqg_A 323 APCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRT 393 (429)
T ss_dssp CCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHC
T ss_pred CCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHHHHHHHhC
Confidence 3222 1111112 1 368999999999999999975 233345566665543
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=4.5e-05 Score=78.43 Aligned_cols=137 Identities=13% Similarity=0.185 Sum_probs=91.0
Q ss_pred hhchhhhHHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----ccc
Q 006905 441 EIFQQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GLV 516 (626)
Q Consensus 441 ~~f~~d~~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gli 516 (626)
-.|..++...+.++.. .+.+ -.+||||+||+|+||-.+++.+. ..|+.+|.++..++.+.+. |+-
T Consensus 106 ~~f~~~~~~er~ri~~------~~~~---g~~VlD~~aG~G~~~i~~a~~g~--~~V~avD~np~a~~~~~~N~~~N~v~ 174 (278)
T 3k6r_A 106 IMFSPANVKERVRMAK------VAKP---DELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVE 174 (278)
T ss_dssp SCCCGGGHHHHHHHHH------HCCT---TCEEEETTCTTTTTTHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCT
T ss_pred eEEcCCcHHHHHHHHH------hcCC---CCEEEEecCcCcHHHHHHHHhcC--CeEEEEECCHHHHHHHHHHHHHcCCC
Confidence 3466666666666542 2344 35799999999999998887763 2678889888877766553 332
Q ss_pred ceeccccccCCCCC--CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC-------hHHHHHHHHHHHhC
Q 006905 517 GTYTNWCEAMSTYP--RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDD-------VDELVKVKRIIDAL 587 (626)
Q Consensus 517 ~~~~~~~e~~~~yp--~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~-------~~~~~~~~~~~~~l 587 (626)
+.+.-.+.+...++ ..||.|..+...+. ...|.+.-++|||||++.+-+. .+..+.++++++..
T Consensus 175 ~~v~~~~~D~~~~~~~~~~D~Vi~~~p~~~-------~~~l~~a~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~ 247 (278)
T 3k6r_A 175 DRMSAYNMDNRDFPGENIADRILMGYVVRT-------HEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEY 247 (278)
T ss_dssp TTEEEECSCTTTCCCCSCEEEEEECCCSSG-------GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHT
T ss_pred CcEEEEeCcHHHhccccCCCEEEECCCCcH-------HHHHHHHHHHcCCCCEEEEEeeecccccchhHHHHHHHHHHHc
Confidence 21222223344454 78998877533321 3456677799999999877421 23577888999999
Q ss_pred CCeeEEee
Q 006905 588 KWQSQIVD 595 (626)
Q Consensus 588 ~w~~~~~~ 595 (626)
.+++.+..
T Consensus 248 g~~v~~~~ 255 (278)
T 3k6r_A 248 GYDVEKLN 255 (278)
T ss_dssp TCEEEEEE
T ss_pred CCcEEEEE
Confidence 99887543
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=4.8e-05 Score=77.38 Aligned_cols=143 Identities=11% Similarity=0.103 Sum_probs=95.3
Q ss_pred HHHhhhhcCCCCCceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhcc-cceec--cccccCCC-CCC
Q 006905 457 YKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERGL-VGTYT--NWCEAMST-YPR 531 (626)
Q Consensus 457 y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rgl-i~~~~--~~~e~~~~-yp~ 531 (626)
|..++..+.. ..+|||+|||+|-||..+... +- -.|..+|.++.+++++.++.- .|.-+ .++.-... .|.
T Consensus 123 Y~~i~~~i~~---p~~VLDLGCG~GpLAl~~~~~~p~--a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~ 197 (281)
T 3lcv_B 123 YRELFRHLPR---PNTLRDLACGLNPLAAPWMGLPAE--TVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDE 197 (281)
T ss_dssp HHHHGGGSCC---CSEEEETTCTTGGGCCTTTTCCTT--CEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCS
T ss_pred HHHHHhccCC---CceeeeeccCccHHHHHHHhhCCC--CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCC
Confidence 6666665643 779999999999999999765 22 267888999899998887732 12111 22233333 349
Q ss_pred ccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC---------h--HHHHHHHHHHHhCCCeeEEeecCCCC
Q 006905 532 TYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDD---------V--DELVKVKRIIDALKWQSQIVDHEDGP 600 (626)
Q Consensus 532 t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~---------~--~~~~~~~~~~~~l~w~~~~~~~e~~~ 600 (626)
.||++-+.-+..++.+. . ...+.++-..|+|+|.||--++ | ......+..+..-.|........
T Consensus 198 ~~DvaL~lkti~~Le~q-~-kg~g~~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~~~~~~~--- 272 (281)
T 3lcv_B 198 PADVTLLLKTLPCLETQ-Q-RGSGWEVIDIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSFESQARERSCRIQRLEIG--- 272 (281)
T ss_dssp CCSEEEETTCHHHHHHH-S-TTHHHHHHHHSSCSEEEEEEECC-------CHHHHHHHHHHHHHHHHTCCEEEEEET---
T ss_pred CcchHHHHHHHHHhhhh-h-hHHHHHHHHHhCCCCEEEeccchhhcCCCcchhhHHHHHHHHHHHhcCCceeeeeec---
Confidence 99999997777776532 1 1234489999999999999877 2 24667777777777765543322
Q ss_pred CCcceEEEEEe
Q 006905 601 LEREKLLFAVK 611 (626)
Q Consensus 601 ~~~e~~l~~~K 611 (626)
.|-+.|.+|
T Consensus 273 --nEl~y~i~k 281 (281)
T 3lcv_B 273 --NELIYVIQK 281 (281)
T ss_dssp --TEEEEEEC-
T ss_pred --CeeEEEecC
Confidence 354555443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 626 | ||||
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 5e-04 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 8e-04 |
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 39.7 bits (91), Expect = 5e-04
Identities = 22/147 (14%), Positives = 40/147 (27%), Gaps = 5/147 (3%)
Query: 196 AYIDDIGKLI-NLNDGSIRTAIDTGCGVASWGAYLLSRNIITMSFAPRDTHEAQVQFALE 254
A ID + ++ +R +D CG L R + + + +
Sbjct: 25 AEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAK 84
Query: 255 RGVPALIGVLAAERLPYPSRAFDMAHCSRCLIP--WNQFGGIYLIEVDRVLRPGGYWILS 312
+ + FD I + +V L+PGG +I
Sbjct: 85 ERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD 144
Query: 313 GPPINWKKHARGWQRTKEDLNKEQTAI 339
P W R + E+ +
Sbjct: 145 FP--CWFYGGRDGPVVWNEQKGEEKLV 169
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 39.3 bits (91), Expect = 8e-04
Identities = 19/164 (11%), Positives = 51/164 (31%), Gaps = 16/164 (9%)
Query: 197 YIDDIGKLIN-LNDGSIRTAIDTGCGVASWGAYLLSRNIITMSFAPRDTHEAQVQFALER 255
D +I ++ G G + +Y+L + + E ++ A++
Sbjct: 70 SEIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDN 129
Query: 256 ----GVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWIL 311
+ ++ + S A + PWN ++ ++ +++PG
Sbjct: 130 LSEFYDIGNVRTSRSDIADFISDQMYDAVIADIPDPWN-----HVQKIASMMKPGSVATF 184
Query: 312 SGPPINWKKHARGWQRTKEDLNKEQTAIENVAKSLCWEKIKEKG 355
P + ++T L+ + + + +G
Sbjct: 185 YLPNFDQ------SEKTVLSLSASGMHHLETVELMKRRILVREG 222
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 626 | |||
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.65 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.65 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.61 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.57 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.54 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.51 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.48 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.45 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.45 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.45 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.44 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.41 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.41 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.4 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.38 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.37 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.35 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.33 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.33 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.32 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.31 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.29 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.29 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.28 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.28 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.27 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.26 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.24 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.24 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.24 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.24 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.23 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.22 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.22 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.22 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.22 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.21 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.21 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.19 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.18 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.15 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.14 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.14 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.13 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.13 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.11 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.11 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.1 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.08 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.05 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.04 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.04 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.03 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.03 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.03 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.02 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.02 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.02 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.0 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.0 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 98.99 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 98.99 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 98.98 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 98.97 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 98.94 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 98.94 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 98.93 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.91 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 98.91 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 98.89 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 98.88 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 98.86 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 98.86 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 98.84 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 98.83 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 98.82 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.77 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 98.77 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.71 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 98.7 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 98.69 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 98.69 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.68 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 98.67 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 98.63 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.62 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.61 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 98.59 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.55 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 98.53 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.49 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 98.49 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 98.47 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.46 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.35 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.34 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 98.32 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.31 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.27 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 98.24 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.23 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.22 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.16 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 98.16 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.12 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.02 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.01 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 97.99 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 97.98 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 97.98 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 97.96 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 97.96 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 97.92 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 97.92 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 97.91 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 97.91 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 97.89 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 97.88 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 97.86 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 97.84 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 97.78 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 97.75 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 97.74 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.73 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 97.68 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 97.65 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 97.65 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.6 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 97.6 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 97.57 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 97.55 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.49 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 97.46 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 97.45 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 97.4 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 97.34 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.3 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 97.3 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.29 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 97.28 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 97.24 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 97.22 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.2 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.18 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.13 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.11 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 97.09 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.08 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.06 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 96.97 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 96.97 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 96.97 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 96.93 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 96.88 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 96.87 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 96.87 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 96.87 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 96.82 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 96.71 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 96.71 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 96.71 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 96.63 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 96.62 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 96.6 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 96.51 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 96.47 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 96.44 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 96.28 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 96.13 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 95.79 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 95.48 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 95.44 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 95.41 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 95.35 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 95.34 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 95.27 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 95.25 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 95.16 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 95.1 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 94.96 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 94.56 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 94.47 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 94.4 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 94.09 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 93.87 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 93.67 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 93.67 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 93.38 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 93.35 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 92.41 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 92.39 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 91.64 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 91.3 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 91.11 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 91.0 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 90.94 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 90.47 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 88.86 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 88.25 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 88.2 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 88.14 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 87.12 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 86.46 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 86.23 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 85.8 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 85.47 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 84.97 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 81.89 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 81.0 |
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.65 E-value=2.7e-16 Score=153.21 Aligned_cols=112 Identities=14% Similarity=0.205 Sum_probs=87.1
Q ss_pred HHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCe
Q 006905 199 DDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAF 276 (626)
Q Consensus 199 ~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sF 276 (626)
.++.+.+++.+ +.+|||||||+|.++..|+++ .++++|+++.++..++..........+.+.+++.+.+|+++++|
T Consensus 5 ~~ll~~~~l~~--~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~f 82 (231)
T d1vl5a_ 5 AKLMQIAALKG--NEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERF 82 (231)
T ss_dssp HHHHHHHTCCS--CCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCE
T ss_pred HHHHHhcCCCC--cCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhccccccccccccccccccccccccccc
Confidence 34555665555 449999999999999999987 67788887766554433333222345778889999999999999
Q ss_pred eEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 277 DMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 277 DlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
|+|+|..+++|+. ++..+|+++.|+|||||+|++..
T Consensus 83 D~v~~~~~l~~~~-d~~~~l~~~~r~LkpgG~l~i~~ 118 (231)
T d1vl5a_ 83 HIVTCRIAAHHFP-NPASFVSEAYRVLKKGGQLLLVD 118 (231)
T ss_dssp EEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccccccccC-CHHHHHHHHHHhcCCCcEEEEEe
Confidence 9999999996665 47899999999999999999974
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.65 E-value=3.3e-16 Score=153.84 Aligned_cols=113 Identities=23% Similarity=0.297 Sum_probs=91.2
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCCCCC
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLPYPS 273 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lpf~d 273 (626)
+.+.+.+.+.++++. +|||||||+|.++..|+++ .++++|+++.++..++ +.+...+. .+.+.++|++.+||++
T Consensus 4 ~~~~l~~~~~~~~~~--rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~-~~~~~~~~~~~~~~~~d~~~~~~~~ 80 (234)
T d1xxla_ 4 SLGLMIKTAECRAEH--RVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVAS-SFAQEKGVENVRFQQGTAESLPFPD 80 (234)
T ss_dssp HHHHHHHHHTCCTTC--EEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHH-HHHHHHTCCSEEEEECBTTBCCSCT
T ss_pred HHHHHHHHhCCCCCC--EEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhh-hhhcccccccccccccccccccccc
Confidence 445566777666654 9999999999999999987 6888888776655444 33334454 4778888999999999
Q ss_pred CCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 274 RAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 274 ~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
++||+|+|..+++|. .++..+|+++.|+|||||++++..
T Consensus 81 ~~fD~v~~~~~l~~~-~d~~~~l~~~~r~LkpgG~~~~~~ 119 (234)
T d1xxla_ 81 DSFDIITCRYAAHHF-SDVRKAVREVARVLKQDGRFLLVD 119 (234)
T ss_dssp TCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccceeeeeceeecc-cCHHHHHHHHHHeeCCCcEEEEEE
Confidence 999999999999655 457999999999999999999974
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.61 E-value=1.7e-15 Score=146.11 Aligned_cols=117 Identities=20% Similarity=0.300 Sum_probs=89.4
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCC
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSR 274 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~ 274 (626)
.++.+..++...-.+..+|||||||+|.++..|++. .++++|+++.++..+. +.+...+....+...|+..+|++++
T Consensus 23 ~~~~~~~~~~~~l~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak-~~~~~~~~~~~~~~~d~~~l~~~~~ 101 (226)
T d1ve3a1 23 RIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAR-EYAKSRESNVEFIVGDARKLSFEDK 101 (226)
T ss_dssp HHHHHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHHTTCCCEEEECCTTSCCSCTT
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhh-hhhccccccccccccccccccccCc
Confidence 344555555422123458999999999999999997 5688888775555443 3333456667778888999999999
Q ss_pred CeeEEEeccccccccc-cHHHHHHHHHhcccCCeEEEEEeC
Q 006905 275 AFDMAHCSRCLIPWNQ-FGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 275 sFDlV~~~~~l~h~~~-~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+||+|+|..+++|+.. +...+|+++.|+|||||+|++..+
T Consensus 102 ~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 102 TFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp CEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 9999999999987753 347899999999999999999753
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.57 E-value=3.5e-15 Score=145.77 Aligned_cols=98 Identities=26% Similarity=0.425 Sum_probs=79.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEeccccccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSRN--IITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPW 288 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~~--V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~ 288 (626)
.+.+|||+|||+|.++..|++.+ |+++|+ ++.+++.|++++... +..+++..+|+++++||+|+|...++|+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~-----s~~~l~~a~~~~~~~-~~~~~~~~l~~~~~~fD~ii~~~~~~~~ 115 (246)
T d2avna1 42 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDP-----SKEMLEVAREKGVKN-VVEAKAEDLPFPSGAFEAVLALGDVLSY 115 (246)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTCEEEEEES-----CHHHHHHHHHHTCSC-EEECCTTSCCSCTTCEEEEEECSSHHHH
T ss_pred CCCEEEEECCCCchhcccccccceEEEEeec-----ccccccccccccccc-cccccccccccccccccceeeecchhhh
Confidence 34589999999999999999984 566666 456777888887654 4467899999999999999986544355
Q ss_pred cccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 289 NQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 289 ~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
..++..+|+++.|+|||||+++++.+
T Consensus 116 ~~d~~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 116 VENKDKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhHHHHHHHHHhhcCcCcEEEEEEC
Confidence 55678999999999999999999864
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.54 E-value=1.5e-14 Score=146.11 Aligned_cols=102 Identities=17% Similarity=0.320 Sum_probs=83.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCCCCCCCeeEEEecccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lpf~d~sFDlV~~~~~l 285 (626)
++.+|||||||+|.++..|+++ .|+++|+++.++..+.. .+...|+ .+.+..++...+|+++++||+|+|..++
T Consensus 67 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~-~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l 145 (282)
T d2o57a1 67 RQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEE-YNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAF 145 (282)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHH-HHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCG
T ss_pred CCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhc-ccccccccccccccccccccccccccccchhhccchh
Confidence 3569999999999999999875 57888887755543332 3334454 4778888999999999999999999999
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 286 IPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 286 ~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+|+.+ +..+|+++.|+|||||+|++..+
T Consensus 146 ~h~~d-~~~~l~~~~~~LkpgG~l~~~~~ 173 (282)
T d2o57a1 146 LHSPD-KLKVFQECARVLKPRGVMAITDP 173 (282)
T ss_dssp GGCSC-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhccC-HHHHHHHHHHhcCCCcEEEEEEe
Confidence 88764 68999999999999999999753
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=3.5e-14 Score=140.26 Aligned_cols=116 Identities=17% Similarity=0.180 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEccccc
Q 006905 194 ADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAER 268 (626)
Q Consensus 194 a~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~ 268 (626)
....++.+.+.+.+.++ .+|||||||+|.++..|+++ .++++|+++.++..+ .+.+.+.|+. +.+..+|...
T Consensus 18 ~~~~~~~l~~~~~l~pg--~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~a-r~~~~~~gl~~~v~~~~~d~~~ 94 (245)
T d1nkva_ 18 TEEKYATLGRVLRMKPG--TRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQA-KRRAEELGVSERVHFIHNDAAG 94 (245)
T ss_dssp CHHHHHHHHHHTCCCTT--CEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHH-HHHHHHTTCTTTEEEEESCCTT
T ss_pred CHHHHHHHHHHcCCCCC--CEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHH-HHHHHHhhccccchhhhhHHhh
Confidence 45566778888877764 49999999999999998875 467777766544433 2334455654 6788888888
Q ss_pred CCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 269 LPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 269 Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+ +++++||+|+|..+++|+.+ ...+|.++.|+|||||++++..+
T Consensus 95 ~-~~~~~fD~v~~~~~~~~~~d-~~~~l~~~~r~LkPGG~l~i~~~ 138 (245)
T d1nkva_ 95 Y-VANEKCDVAACVGATWIAGG-FAGAEELLAQSLKPGGIMLIGEP 138 (245)
T ss_dssp C-CCSSCEEEEEEESCGGGTSS-SHHHHHHHTTSEEEEEEEEEEEE
T ss_pred c-cccCceeEEEEEehhhccCC-HHHHHHHHHHHcCcCcEEEEEec
Confidence 7 46889999999999977765 58999999999999999999754
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=3.1e-14 Score=138.74 Aligned_cols=102 Identities=15% Similarity=0.180 Sum_probs=79.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCCCCCCCeeEEEeccccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLPYPSRAFDMAHCSRCLI 286 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~ 286 (626)
...+|||||||+|.++..|+++ .|+++|+++.++..+..... ..+. ...+.++|+..+++++++||+|+|..+++
T Consensus 60 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~-~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~ 138 (222)
T d2ex4a1 60 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLG-EEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 138 (222)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTG-GGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccc-cccccccccccccccccccccccccccccccccc
Confidence 4568999999999999988754 57888887755544332222 2222 35678889999999999999999999998
Q ss_pred cccccH-HHHHHHHHhcccCCeEEEEEe
Q 006905 287 PWNQFG-GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 287 h~~~~~-~~~L~Ei~RvLKPGG~lvis~ 313 (626)
|+.+.. ..+|.++.++|||||.+++..
T Consensus 139 h~~~~~~~~~l~~i~~~Lk~~G~~~i~~ 166 (222)
T d2ex4a1 139 HLTDQHLAEFLRRCKGSLRPNGIIVIKD 166 (222)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cchhhhhhhHHHHHHHhcCCcceEEEEE
Confidence 876543 579999999999999999975
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.45 E-value=1.1e-13 Score=139.33 Aligned_cols=94 Identities=21% Similarity=0.375 Sum_probs=78.4
Q ss_pred CCCCCEEEEeCCCCchHHHHHhhC--C--cEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEeccc
Q 006905 209 DGSIRTAIDTGCGVASWGAYLLSR--N--IITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRC 284 (626)
Q Consensus 209 ~~~~~~VLDIGCGtG~~a~~La~~--~--V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~ 284 (626)
+..+.+|||||||+|.++..|++. + ++++|+ ++.+++.|+++...+.+.++|+..+|+++++||+|++..+
T Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~-----s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~ 156 (268)
T d1p91a_ 82 DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDV-----SKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYA 156 (268)
T ss_dssp CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEES-----CHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESC
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecc-----hHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCC
Confidence 344668999999999999999886 3 445555 4567778888877888999999999999999999999887
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEeCC
Q 006905 285 LIPWNQFGGIYLIEVDRVLRPGGYWILSGPP 315 (626)
Q Consensus 285 l~h~~~~~~~~L~Ei~RvLKPGG~lvis~pp 315 (626)
++| +.|+.|+|||||+|+++.|.
T Consensus 157 ~~~--------~~e~~rvLkpgG~l~~~~p~ 179 (268)
T d1p91a_ 157 PCK--------AEELARVVKPGGWVITATPG 179 (268)
T ss_dssp CCC--------HHHHHHHEEEEEEEEEEEEC
T ss_pred HHH--------HHHHHHHhCCCcEEEEEeeC
Confidence 744 57899999999999999763
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.45 E-value=1.8e-13 Score=131.13 Aligned_cols=94 Identities=23% Similarity=0.275 Sum_probs=79.3
Q ss_pred CEEEEeCCCCchHHHHHhhCCcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEeccccccccccH
Q 006905 213 RTAIDTGCGVASWGAYLLSRNIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFG 292 (626)
Q Consensus 213 ~~VLDIGCGtG~~a~~La~~~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~~~ 292 (626)
.+|||||||+|.++..+. .++++|+++ .+++.+++++ +.+.+.+...+|+++++||+|+|..+++|.. ++
T Consensus 38 ~~vLDiGcG~G~~~~~~~--~~~giD~s~-----~~~~~a~~~~--~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~-d~ 107 (208)
T d1vlma_ 38 GRGVEIGVGTGRFAVPLK--IKIGVEPSE-----RMAEIARKRG--VFVLKGTAENLPLKDESFDFALMVTTICFVD-DP 107 (208)
T ss_dssp SCEEEETCTTSTTHHHHT--CCEEEESCH-----HHHHHHHHTT--CEEEECBTTBCCSCTTCEEEEEEESCGGGSS-CH
T ss_pred CeEEEECCCCcccccccc--eEEEEeCCh-----hhcccccccc--ccccccccccccccccccccccccccccccc-cc
Confidence 379999999999998885 467887755 5667777775 4677788999999999999999999997775 57
Q ss_pred HHHHHHHHhcccCCeEEEEEeCCC
Q 006905 293 GIYLIEVDRVLRPGGYWILSGPPI 316 (626)
Q Consensus 293 ~~~L~Ei~RvLKPGG~lvis~pp~ 316 (626)
..+|.++.|+|||||.+++..+..
T Consensus 108 ~~~l~~~~~~L~pgG~l~i~~~~~ 131 (208)
T d1vlma_ 108 ERALKEAYRILKKGGYLIVGIVDR 131 (208)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECS
T ss_pred ccchhhhhhcCCCCceEEEEecCC
Confidence 899999999999999999987643
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.45 E-value=2e-13 Score=134.24 Aligned_cols=113 Identities=17% Similarity=0.225 Sum_probs=84.2
Q ss_pred HHHHhhc-cCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCe
Q 006905 200 DIGKLIN-LNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAF 276 (626)
Q Consensus 200 ~L~~ll~-l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sF 276 (626)
.+..++. ....+..+|||||||+|.++..|+++ .++++|+++.++..+.. .+.+++..+.+.++|+..++++ ++|
T Consensus 29 ~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~-~~~~~~~~i~~~~~d~~~l~~~-~~f 106 (251)
T d1wzna1 29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARR-KAKERNLKIEFLQGDVLEIAFK-NEF 106 (251)
T ss_dssp HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHTTCCCEEEESCGGGCCCC-SCE
T ss_pred HHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccceEEEEEeecccccccccc-ccccccccchheehhhhhcccc-ccc
Confidence 3444443 23334568999999999999999987 67888887766654443 3345577888999999999987 589
Q ss_pred eEEEecc-cccccc-ccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 277 DMAHCSR-CLIPWN-QFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 277 DlV~~~~-~l~h~~-~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
|+|+|.. +++|.. .+...+|+++.++|||||+|++..+
T Consensus 107 D~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~ 146 (251)
T d1wzna1 107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (251)
T ss_dssp EEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred chHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 9999975 444432 2336899999999999999999754
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.44 E-value=1e-13 Score=138.56 Aligned_cols=100 Identities=17% Similarity=0.275 Sum_probs=79.9
Q ss_pred CCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHc--CCC-eEEEEcccccCCCCCCCeeEEEecc
Q 006905 210 GSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALER--GVP-ALIGVLAAERLPYPSRAFDMAHCSR 283 (626)
Q Consensus 210 ~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~er--g~~-~~~~v~d~~~Lpf~d~sFDlV~~~~ 283 (626)
....+|||+|||+|.++..|+.+ .|+++|+++. +++.|+++ +.+ +.+.+.+.+.+++++++||+|+|..
T Consensus 92 ~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~-----~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~ 166 (254)
T d1xtpa_ 92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKH-----MLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQW 166 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHH-----HHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEES
T ss_pred CCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHH-----HHHhhhccccccccceeEEccccccccCCCccceEEeec
Confidence 34568999999999999988764 5778888664 44455443 222 5677788999999999999999999
Q ss_pred ccccccccH-HHHHHHHHhcccCCeEEEEEeC
Q 006905 284 CLIPWNQFG-GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 284 ~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+++|+.++. ..+|+++.++|||||+|+|..+
T Consensus 167 vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~ 198 (254)
T d1xtpa_ 167 TAIYLTDADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccchhhhHHHHHHHHHhcCCCcEEEEEec
Confidence 998887643 5889999999999999999753
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.41 E-value=4e-13 Score=132.37 Aligned_cols=115 Identities=18% Similarity=0.208 Sum_probs=84.8
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhCC--cEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCC
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSRN--IITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSR 274 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~~--V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~ 274 (626)
..+.+.+++.......++|||||||+|.++..|++++ ++++|+++.++..++ +.+...+.++.+.++|+..+++ ++
T Consensus 23 ~~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~-~~~~~~~~~v~~~~~d~~~~~~-~~ 100 (246)
T d1y8ca_ 23 WSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAE-NKFRSQGLKPRLACQDISNLNI-NR 100 (246)
T ss_dssp HHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHH-HHHHHTTCCCEEECCCGGGCCC-SC
T ss_pred HHHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhcc-ccccccCccceeeccchhhhcc-cc
Confidence 3445555555444446789999999999999999984 777777665555433 2233457788888888888876 46
Q ss_pred CeeEEEec-cccccccc--cHHHHHHHHHhcccCCeEEEEEe
Q 006905 275 AFDMAHCS-RCLIPWNQ--FGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 275 sFDlV~~~-~~l~h~~~--~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+||+|+|. .+++|+.. +...+|+++.++|||||.|++..
T Consensus 101 ~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 142 (246)
T d1y8ca_ 101 KFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp CEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred cccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 89999986 44545433 33679999999999999999864
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.41 E-value=4e-13 Score=128.37 Aligned_cols=99 Identities=15% Similarity=0.338 Sum_probs=78.9
Q ss_pred CEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEcccccCCCCCCCeeEEEecccccccc
Q 006905 213 RTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAERLPYPSRAFDMAHCSRCLIPWN 289 (626)
Q Consensus 213 ~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~ 289 (626)
.+|||||||+|..+.+|+++ .++++|+++.++..+.. .+.+.+++ +.+...|...+++ +++||+|+|..+++|.+
T Consensus 32 grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~-~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~~~~ 109 (198)
T d2i6ga1 32 GRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLER-IKAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVVMMFLE 109 (198)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHTTCTTEEEEECCTTTCCC-CCCEEEEEEESCGGGSC
T ss_pred CcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHH-Hhhhccccchhhhheecccccc-cccccEEEEeeeeecCC
Confidence 48999999999999999998 57788887766654433 34455655 5667777777775 67899999999998876
Q ss_pred ccH-HHHHHHHHhcccCCeEEEEEe
Q 006905 290 QFG-GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 290 ~~~-~~~L~Ei~RvLKPGG~lvis~ 313 (626)
... ..++.++.++|+|||++++..
T Consensus 110 ~~~~~~~l~~~~~~L~pgG~~~~~~ 134 (198)
T d2i6ga1 110 AQTIPGLIANMQRCTKPGGYNLIVA 134 (198)
T ss_dssp TTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 543 689999999999999999975
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.40 E-value=5.8e-13 Score=129.67 Aligned_cols=114 Identities=18% Similarity=0.085 Sum_probs=78.3
Q ss_pred HHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC------CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccC
Q 006905 198 IDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR------NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERL 269 (626)
Q Consensus 198 i~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~------~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~L 269 (626)
.+.+..++.....++.+|||||||+|..+..|++. .++++|+++.++..+..+.+ +.+. ...+...+. .
T Consensus 26 ~~~i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~-~~~~~~~~~~~~~d~--~ 102 (225)
T d1im8a_ 26 ITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIA-AYHSEIPVEILCNDI--R 102 (225)
T ss_dssp HHHHHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHH-TSCCSSCEEEECSCT--T
T ss_pred HHHHHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhH-hhcccchhhhccchh--h
Confidence 33444444432334568999999999999888763 57888887765554433332 2233 334443334 4
Q ss_pred CCCCCCeeEEEecccccccc-ccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 270 PYPSRAFDMAHCSRCLIPWN-QFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 270 pf~d~sFDlV~~~~~l~h~~-~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+++...||+|+|+.++++.. ++...+|+++.|+|||||.|++..+
T Consensus 103 ~~~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~ 148 (225)
T d1im8a_ 103 HVEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 148 (225)
T ss_dssp TCCCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeecccc
Confidence 55567899999999997665 3457999999999999999999854
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.38 E-value=9.8e-13 Score=132.99 Aligned_cols=116 Identities=17% Similarity=0.179 Sum_probs=87.1
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccC
Q 006905 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERL 269 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~L 269 (626)
+.|++.|.+.+. ....+.+|||||||+|.++..|++. .++++|+++.++..+. +.+...+..+.+.+.|+..+
T Consensus 12 ~d~l~~l~~~~~-~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~-~~~~~~~~~~~f~~~d~~~~ 89 (281)
T d2gh1a1 12 DDYVSFLVNTVW-KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEAR-ELFRLLPYDSEFLEGDATEI 89 (281)
T ss_dssp HHHHHHHHHTTS-CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHH-HHHHSSSSEEEEEESCTTTC
T ss_pred HHHHHHHHHHHh-ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhh-cccccccccccccccccccc
Confidence 445555554432 1223568999999999999999874 4788888775554333 23334456678888898888
Q ss_pred CCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 270 PYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 270 pf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+++ ++||+|+|+.+++|.. ++..+|+++.|+|||||.+++..+
T Consensus 90 ~~~-~~fD~v~~~~~l~~~~-d~~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 90 ELN-DKYDIAICHAFLLHMT-TPETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp CCS-SCEEEEEEESCGGGCS-SHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ccc-CCceEEEEehhhhcCC-CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 876 4799999999997665 468999999999999999999875
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.37 E-value=6.7e-13 Score=132.80 Aligned_cols=122 Identities=18% Similarity=0.147 Sum_probs=88.8
Q ss_pred CCCCCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEc
Q 006905 187 GTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVL 264 (626)
Q Consensus 187 gt~F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~ 264 (626)
|..|+.|...-.+.+.+.+.....++.+|||+|||+|.++..+++. .|+++|+++.++..+. +.++.+++...+..+
T Consensus 96 g~aFGTG~H~TT~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~-~na~~n~~~~~~~~~ 174 (254)
T d2nxca1 96 GMAFGTGHHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAE-ANAKRNGVRPRFLEG 174 (254)
T ss_dssp C-----CCSHHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHH-HHHHHTTCCCEEEES
T ss_pred ccccCccccchhhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHH-HHHHHcCCceeEEec
Confidence 4456777776666666666543445669999999999999888876 6889999997776544 456677888888777
Q ss_pred ccccCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 265 AAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 265 d~~~Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+... .+++++||+|+++...+ ....++.++.|+|||||+|++++.
T Consensus 175 d~~~-~~~~~~fD~V~ani~~~----~l~~l~~~~~~~LkpGG~lilSgi 219 (254)
T d2nxca1 175 SLEA-ALPFGPFDLLVANLYAE----LHAALAPRYREALVPGGRALLTGI 219 (254)
T ss_dssp CHHH-HGGGCCEEEEEEECCHH----HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccc-cccccccchhhhccccc----cHHHHHHHHHHhcCCCcEEEEEec
Confidence 7543 34567999999976442 236788999999999999999853
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.35 E-value=6.2e-13 Score=124.66 Aligned_cols=100 Identities=11% Similarity=-0.026 Sum_probs=74.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhCCcEEEeCCccchHHHHHHHHHHc-----------------CCCeEEEEcccccCC-CC
Q 006905 211 SIRTAIDTGCGVASWGAYLLSRNIITMSFAPRDTHEAQVQFALER-----------------GVPALIGVLAAERLP-YP 272 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~~V~avdis~~dls~a~i~~A~er-----------------g~~~~~~v~d~~~Lp-f~ 272 (626)
++.+|||+|||+|..+.+|++++..++.+ |+++.+++.|+++ +....+...+...++ ..
T Consensus 20 ~~~rvLd~GCG~G~~a~~la~~G~~V~gv---D~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~ 96 (201)
T d1pjza_ 20 PGARVLVPLCGKSQDMSWLSGQGYHVVGA---ELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARD 96 (201)
T ss_dssp TTCEEEETTTCCSHHHHHHHHHCCEEEEE---EECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHH
T ss_pred CCCEEEEecCcCCHHHHHHHHcCCceEee---cccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccccc
Confidence 35599999999999999999986544444 4455666666653 222345556666665 34
Q ss_pred CCCeeEEEeccccccccccH-HHHHHHHHhcccCCeEEEEEe
Q 006905 273 SRAFDMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 273 d~sFDlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~ 313 (626)
..+||+|++..++++...+. ..+++++.++|||||++++..
T Consensus 97 ~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~ 138 (201)
T d1pjza_ 97 IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT 138 (201)
T ss_dssp HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred ccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEE
Confidence 56899999999997776533 689999999999999998864
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.33 E-value=1.9e-12 Score=126.22 Aligned_cols=98 Identities=15% Similarity=0.087 Sum_probs=77.9
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCCCCCCCeeEEEeccccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLPYPSRAFDMAHCSRCLIPW 288 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~ 288 (626)
+.+|||||||+|.++..|+++ .|+++|+++ .+++.|+++.. .+.+..++.+.+++ +++||+|+|..+++|.
T Consensus 21 ~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~-----~~i~~a~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~~~vleh~ 94 (225)
T d2p7ia1 21 PGNLLELGSFKGDFTSRLQEHFNDITCVEASE-----EAISHAQGRLKDGITYIHSRFEDAQL-PRRYDNIVLTHVLEHI 94 (225)
T ss_dssp SSCEEEESCTTSHHHHHHTTTCSCEEEEESCH-----HHHHHHHHHSCSCEEEEESCGGGCCC-SSCEEEEEEESCGGGC
T ss_pred CCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcH-----HHhhhhhccccccccccccccccccc-ccccccccccceeEec
Confidence 347999999999999999987 677777755 55666665533 46667777777775 5789999999999776
Q ss_pred cccHHHHHHHHH-hcccCCeEEEEEeCCC
Q 006905 289 NQFGGIYLIEVD-RVLRPGGYWILSGPPI 316 (626)
Q Consensus 289 ~~~~~~~L~Ei~-RvLKPGG~lvis~pp~ 316 (626)
. ++..+|.++. |+|||||.+++..|..
T Consensus 95 ~-d~~~~l~~i~~~~Lk~gG~l~i~~pn~ 122 (225)
T d2p7ia1 95 D-DPVALLKRINDDWLAEGGRLFLVCPNA 122 (225)
T ss_dssp S-SHHHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred C-CHHHHHHHHHHHhcCCCceEEEEeCCc
Confidence 5 4688999997 8999999999987643
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.33 E-value=1.1e-12 Score=129.98 Aligned_cols=102 Identities=20% Similarity=0.233 Sum_probs=77.5
Q ss_pred CCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCCC-CCCCeeEEEecccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLPY-PSRAFDMAHCSRCL 285 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lpf-~d~sFDlV~~~~~l 285 (626)
+.+|||||||+|..+..+++. .++++|+++.++..+..+ +.+.+. .+.+.++|....++ .+++||+|+|..++
T Consensus 25 ~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r-~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~l 103 (252)
T d1ri5a_ 25 GDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVR-ARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSF 103 (252)
T ss_dssp TCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHH-HHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCG
T ss_pred cCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHH-HHhcCCCcceEEEEcchhhhcccccccceEEEEccee
Confidence 558999999999988888775 478888877655544322 222232 46678888766665 46789999999999
Q ss_pred ccccccH---HHHHHHHHhcccCCeEEEEEeC
Q 006905 286 IPWNQFG---GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 286 ~h~~~~~---~~~L~Ei~RvLKPGG~lvis~p 314 (626)
||..... ..+|.++.|+|||||+|+++.+
T Consensus 104 ~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~ 135 (252)
T d1ri5a_ 104 HYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 135 (252)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred eecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence 8775432 5799999999999999999854
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.32 E-value=3e-12 Score=122.23 Aligned_cols=133 Identities=13% Similarity=0.130 Sum_probs=90.6
Q ss_pred cCCceecCCCCCCCCCc-HHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHH
Q 006905 177 EGDRFRFPGGGTMFPNG-ADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFAL 253 (626)
Q Consensus 177 ~ge~~~Fp~ggt~F~~g-a~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~ 253 (626)
.|+.+.|......|..+ .+...+.+.+.+...+ +.+|||+|||+|.++..|++. .++++|+++..+..+..+. .
T Consensus 19 ~g~~~~~~t~~gvF~~~~~d~~t~lLi~~l~~~~--~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~-~ 95 (194)
T d1dusa_ 19 RGKKLKFKTDSGVFSYGKVDKGTKILVENVVVDK--DDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENI-K 95 (194)
T ss_dssp TTEEEEEEEETTSTTTTSCCHHHHHHHHHCCCCT--TCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHH-H
T ss_pred CCeeEEEEcCCCccCCCCcCHHHHHHHHhCCcCC--CCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHH-H
Confidence 45666664433345432 2222334555554433 559999999999999999886 7888998876555444333 3
Q ss_pred HcCC---CeEEEEcccccCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 254 ERGV---PALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 254 erg~---~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
..++ .+.+...|... ++++++||+|+|+.++++..+....++.++.++|+|||.+++..
T Consensus 96 ~~~l~~~~i~~~~~d~~~-~~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 96 LNNLDNYDIRVVHSDLYE-NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp HTTCTTSCEEEEECSTTT-TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhCCccceEEEEEcchhh-hhccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEE
Confidence 3333 35666666554 56788999999999875544434789999999999999998864
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.31 E-value=1.3e-12 Score=126.52 Aligned_cols=96 Identities=20% Similarity=0.285 Sum_probs=78.1
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceeccccccCCCCC-Cccceeeecccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYTNWCEAMSTYP-RTYDLIHADSVF 542 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~~~~e~~~~yp-~t~Dlih~~~~f 542 (626)
-.+|||+|||.|.++.+|++.+. +|+.+|.+++|++.+.++ |+ +.+++.-++.++ +| ++||+|+|..++
T Consensus 16 ~~rVLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~-~~~~~fD~v~~~~~l 91 (231)
T d1vl5a_ 16 NEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP-FTDERFHIVTCRIAA 91 (231)
T ss_dssp CCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCC-SCTTCEEEEEEESCG
T ss_pred cCEEEEecccCcHHHHHHHHhCC---EEEEEECCHHHHhhhhhccccccccccccccccccccc-ccccccccccccccc
Confidence 45799999999999999999876 789999999999987654 33 334443344433 55 999999999999
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
.|.. +.+.+|.|+.|+|||||+++|.+
T Consensus 92 ~~~~---d~~~~l~~~~r~LkpgG~l~i~~ 118 (231)
T d1vl5a_ 92 HHFP---NPASFVSEAYRVLKKGGQLLLVD 118 (231)
T ss_dssp GGCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccC---CHHHHHHHHHHhcCCCcEEEEEe
Confidence 9886 56899999999999999999975
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.29 E-value=4.1e-12 Score=129.39 Aligned_cols=110 Identities=14% Similarity=0.102 Sum_probs=76.9
Q ss_pred HHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEcccccCCCC
Q 006905 198 IDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAERLPYP 272 (626)
Q Consensus 198 i~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~Lpf~ 272 (626)
++.+.+.+.+.+ +.+|||||||.|.++.+++++ .++++++++.....+ .+.+.+.++. +.+.. ...+++
T Consensus 50 ~~~~~~~l~l~~--G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a-~~~~~~~~l~~~v~~~~---~d~~~~ 123 (291)
T d1kpia_ 50 RKLALDKLNLEP--GMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHD-KAMFDEVDSPRRKEVRI---QGWEEF 123 (291)
T ss_dssp HHHHHHTTCCCT--TCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHH-HHHHHHSCCSSCEEEEE---CCGGGC
T ss_pred HHHHHHhcCCCC--CCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHH-HHHHHhhccchhhhhhh---hccccc
Confidence 344555555554 559999999999999999875 455666655333222 2233344554 23332 234566
Q ss_pred CCCeeEEEecccccccccc--------HHHHHHHHHhcccCCeEEEEEe
Q 006905 273 SRAFDMAHCSRCLIPWNQF--------GGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 273 d~sFDlV~~~~~l~h~~~~--------~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+++||.|+|..+++|+.+. ...+|+++.|+|||||.+++..
T Consensus 124 ~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~ 172 (291)
T d1kpia_ 124 DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 172 (291)
T ss_dssp CCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred ccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence 7899999999999998752 3789999999999999999964
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.29 E-value=1.8e-12 Score=126.78 Aligned_cols=99 Identities=18% Similarity=0.322 Sum_probs=79.8
Q ss_pred cCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc----c--cceeccccccCCCCC-Ccccee
Q 006905 464 LGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG----L--VGTYTNWCEAMSTYP-RTYDLI 536 (626)
Q Consensus 464 ~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg----l--i~~~~~~~e~~~~yp-~t~Dli 536 (626)
+.+ -..|||+|||+|.++..|++++. +|+++|.+++|++++.++- + +..+..-.+.+ ++| ++||+|
T Consensus 14 ~~~---~~rILDiGcGtG~~~~~la~~~~---~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v 86 (234)
T d1xxla_ 14 CRA---EHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL-PFPDDSFDII 86 (234)
T ss_dssp CCT---TCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC-CSCTTCEEEE
T ss_pred CCC---CCEEEEeCCcCcHHHHHHHHhCC---eEEEEeCChhhhhhhhhhhcccccccccccccccccc-ccccccccee
Confidence 555 34599999999999999999864 8999999999999876653 2 33444323443 356 999999
Q ss_pred eeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 537 HADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 537 h~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
+|.++|.+.. +.+.+|.|+.|+|||||++++.+
T Consensus 87 ~~~~~l~~~~---d~~~~l~~~~r~LkpgG~~~~~~ 119 (234)
T d1xxla_ 87 TCRYAAHHFS---DVRKAVREVARVLKQDGRFLLVD 119 (234)
T ss_dssp EEESCGGGCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeeceeeccc---CHHHHHHHHHHeeCCCcEEEEEE
Confidence 9999999876 57999999999999999999974
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.28 E-value=3.1e-12 Score=124.35 Aligned_cols=95 Identities=23% Similarity=0.385 Sum_probs=78.7
Q ss_pred eEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceeccccccCCCCC-Cccceeeec-cccccCCCCC
Q 006905 472 NILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYP-RTYDLIHAD-SVFSLYKDRC 549 (626)
Q Consensus 472 ~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~yp-~t~Dlih~~-~~f~~~~~~c 549 (626)
.|||+|||+|.++..|++.+. .|+++|.++.|++.+.+++..-....-.+.++ || ++||+|.|. .++.|..
T Consensus 45 ~vLDiGcG~G~~~~~l~~~~~---~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~-~~~~~fD~ii~~~~~~~~~~--- 117 (246)
T d2avna1 45 RVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGVKNVVEAKAEDLP-FPSGAFEAVLALGDVLSYVE--- 117 (246)
T ss_dssp EEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTCSCEEECCTTSCC-SCTTCEEEEEECSSHHHHCS---
T ss_pred EEEEECCCCchhcccccccce---EEEEeecccccccccccccccccccccccccc-cccccccceeeecchhhhhh---
Confidence 599999999999999999986 79999999999999999987544333234443 55 999999985 5777766
Q ss_pred CHHHHHHHhhhhccCCcEEEEEcC
Q 006905 550 ETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 550 ~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
+.+.+|.|+.|+|||||.++++..
T Consensus 118 d~~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 118 NKDKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hHHHHHHHHHhhcCcCcEEEEEEC
Confidence 458899999999999999999753
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=7.6e-12 Score=122.21 Aligned_cols=112 Identities=13% Similarity=0.079 Sum_probs=83.2
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhCC--cEEEeCCccchHHHHHHHHHHc-----------------
Q 006905 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSRN--IITMSFAPRDTHEAQVQFALER----------------- 255 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~~--V~avdis~~dls~a~i~~A~er----------------- 255 (626)
..+.+.+.+++.... +.+|||+|||+|..+.+|++++ |+++|+++ .+++.++++
T Consensus 31 ~~l~~~~~~~l~~~~--~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~-----~ai~~a~~~~~~~~~~~~~~~~~~~~ 103 (229)
T d2bzga1 31 QLLKKHLDTFLKGKS--GLRVFFPLCGKAVEMKWFADRGHSVVGVEISE-----LGIQEFFTEQNLSYSEEPITEIPGTK 103 (229)
T ss_dssp HHHHHHHHHHHTTCC--SCEEEETTCTTCTHHHHHHHTTCEEEEECSCH-----HHHHHHHHHTTCCEEEEECTTSTTCE
T ss_pred HHHHHHHHHhcCCCC--CCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCH-----HHHHHHHHHhhccccccchhcccccc
Confidence 334455666665443 4599999999999999999985 55666555 455554432
Q ss_pred -----CCCeEEEEcccccCC-CCCCCeeEEEeccccccccccH-HHHHHHHHhcccCCeEEEEEe
Q 006905 256 -----GVPALIGVLAAERLP-YPSRAFDMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 256 -----g~~~~~~v~d~~~Lp-f~d~sFDlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+..+.+.+.|...++ ...+.||+|+...+++|...+. ..++.++.++|||||++++..
T Consensus 104 ~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~ 168 (229)
T d2bzga1 104 VFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCV 168 (229)
T ss_dssp EEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred eeeecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEE
Confidence 234667777766664 6678999999999998887554 789999999999999988875
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.27 E-value=1.9e-12 Score=123.92 Aligned_cols=90 Identities=19% Similarity=0.220 Sum_probs=77.1
Q ss_pred eEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceeccccccCCCCCCccceeeeccccccCCCCCCH
Q 006905 472 NILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYPRTYDLIHADSVFSLYKDRCET 551 (626)
Q Consensus 472 ~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~yp~t~Dlih~~~~f~~~~~~c~~ 551 (626)
+|||+|||+|.++..|.+ ++++|.++.++..+.+|++ ..+.+..+.+...+++||+|+|..++.+.. +.
T Consensus 39 ~vLDiGcG~G~~~~~~~~-------~~giD~s~~~~~~a~~~~~-~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~---d~ 107 (208)
T d1vlma_ 39 RGVEIGVGTGRFAVPLKI-------KIGVEPSERMAEIARKRGV-FVLKGTAENLPLKDESFDFALMVTTICFVD---DP 107 (208)
T ss_dssp CEEEETCTTSTTHHHHTC-------CEEEESCHHHHHHHHHTTC-EEEECBTTBCCSCTTCEEEEEEESCGGGSS---CH
T ss_pred eEEEECCCCcccccccce-------EEEEeCChhhccccccccc-cccccccccccccccccccccccccccccc---cc
Confidence 699999999999999864 3578999999999999985 455566666655459999999999999987 57
Q ss_pred HHHHHHhhhhccCCcEEEEEc
Q 006905 552 EDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 552 ~~~l~E~dRiLRPgG~~i~~d 572 (626)
+.+|.|+.|+|||||.+++.+
T Consensus 108 ~~~l~~~~~~L~pgG~l~i~~ 128 (208)
T d1vlma_ 108 ERALKEAYRILKKGGYLIVGI 128 (208)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE
T ss_pred ccchhhhhhcCCCCceEEEEe
Confidence 899999999999999999975
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.26 E-value=7e-12 Score=126.98 Aligned_cols=109 Identities=13% Similarity=0.139 Sum_probs=75.4
Q ss_pred HHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEcccccCCCCC
Q 006905 199 DDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAERLPYPS 273 (626)
Q Consensus 199 ~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~Lpf~d 273 (626)
+.+.+.+.+.+ +.+|||||||+|.++.+++++ .|+++++++..+..+ .+.+++.++. +.+...|...+ +
T Consensus 42 ~~~~~~l~l~~--g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a-~~~~~~~~l~~~~~~~~~d~~~~---~ 115 (280)
T d2fk8a1 42 DLNLDKLDLKP--GMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARC-EQVLASIDTNRSRQVLLQGWEDF---A 115 (280)
T ss_dssp HHHHTTSCCCT--TCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHH-HHHHHTSCCSSCEEEEESCGGGC---C
T ss_pred HHHHHHcCCCC--CCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHH-HHHHHhhccccchhhhhhhhhhh---c
Confidence 34444444444 559999999999999998875 566677655433322 2233344553 33333343333 4
Q ss_pred CCeeEEEeccccccccccH-HHHHHHHHhcccCCeEEEEEe
Q 006905 274 RAFDMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 274 ~sFDlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis~ 313 (626)
++||.|++..+++|+.... ..+|+++.|+|||||.+++..
T Consensus 116 ~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 116 EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred cchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence 6899999999999987543 789999999999999999964
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.24 E-value=5.4e-12 Score=127.80 Aligned_cols=113 Identities=12% Similarity=0.116 Sum_probs=89.3
Q ss_pred HHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHh----cccceeccccccCCC
Q 006905 454 LSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYER----GLVGTYTNWCEAMST 528 (626)
Q Consensus 454 v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~r----gli~~~~~~~e~~~~ 528 (626)
...+..++..++- ..-.+|||+|||.|+++.+++++ ++ +|+.++.++++++.+.+| |+......-...+..
T Consensus 38 ~~k~~~~~~~l~l-~~g~~VLDiGCG~G~~a~~~a~~~g~---~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~ 113 (280)
T d2fk8a1 38 YAKVDLNLDKLDL-KPGMTLLDIGCGWGTTMRRAVERFDV---NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED 113 (280)
T ss_dssp HHHHHHHHTTSCC-CTTCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG
T ss_pred HHHHHHHHHHcCC-CCCCEEEEecCCchHHHHHHHHhCce---eEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhh
Confidence 3344455554443 34667999999999999999876 76 789999999998877665 665444444456667
Q ss_pred CCCccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 529 YPRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 529 yp~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
+|.+||.|.+..+|.|...+ +++.+|.++.|+|||||.++|.
T Consensus 114 ~~~~fD~i~si~~~eh~~~~-~~~~~f~~i~~~LkpgG~~~i~ 155 (280)
T d2fk8a1 114 FAEPVDRIVSIEAFEHFGHE-NYDDFFKRCFNIMPADGRMTVQ 155 (280)
T ss_dssp CCCCCSEEEEESCGGGTCGG-GHHHHHHHHHHHSCTTCEEEEE
T ss_pred hccchhhhhHhhHHHHhhhh-hHHHHHHHHHhccCCCceEEEE
Confidence 78999999999999998764 6789999999999999999985
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.24 E-value=4.7e-12 Score=127.37 Aligned_cols=96 Identities=22% Similarity=0.242 Sum_probs=78.1
Q ss_pred ceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHh----cc---cceeccccccCCCCC-Cccceeeecc
Q 006905 470 YRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYER----GL---VGTYTNWCEAMSTYP-RTYDLIHADS 540 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~~~~e~~~~yp-~t~Dlih~~~ 540 (626)
-.+|||+|||.|+++..|+++ +. +|+++|.++.+++.+.++ |+ +.+++.-.+.+ ++| ++||+|+|..
T Consensus 68 ~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l-~~~~~sfD~V~~~~ 143 (282)
T d2o57a1 68 QAKGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI-PCEDNSYDFIWSQD 143 (282)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC-SSCTTCEEEEEEES
T ss_pred CCEEEEeCCCCcHHHhhhhccCCc---EEEEEeccchhhhhhhcccccccccccccccccccccc-cccccccchhhccc
Confidence 568999999999999999886 55 789999999999888876 33 33444222333 245 9999999999
Q ss_pred ccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 541 VFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 541 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
+|.|.. +.+.+|.|+.|+|||||++++.|
T Consensus 144 ~l~h~~---d~~~~l~~~~~~LkpgG~l~~~~ 172 (282)
T d2o57a1 144 AFLHSP---DKLKVFQECARVLKPRGVMAITD 172 (282)
T ss_dssp CGGGCS---CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhcc---CHHHHHHHHHHhcCCCcEEEEEE
Confidence 999987 45899999999999999999975
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.24 E-value=1e-11 Score=126.02 Aligned_cols=106 Identities=15% Similarity=0.180 Sum_probs=77.1
Q ss_pred HHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHH----cCC--CeEEEEccccc
Q 006905 198 IDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALE----RGV--PALIGVLAAER 268 (626)
Q Consensus 198 i~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~e----rg~--~~~~~v~d~~~ 268 (626)
++.+.+.+.+.+ +.+|||||||.|.++.++++. .|+++++++ .|++.|++ .+. .+.+...|...
T Consensus 51 ~~~~~~~l~l~~--G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~-----~Q~~~a~~~~~~~g~~~~v~~~~~d~~~ 123 (285)
T d1kpga_ 51 IDLALGKLGLQP--GMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSK-----NQANHVQQLVANSENLRSKRVLLAGWEQ 123 (285)
T ss_dssp HHHHHTTTTCCT--TCEEEEETCTTSHHHHHHHHHHCCEEEEEESCH-----HHHHHHHHHHHTCCCCSCEEEEESCGGG
T ss_pred HHHHHHHcCCCC--CCEEEEecCcchHHHHHHHhcCCcceEEEeccH-----HHHHHHHHHHHhhhhhhhhHHHHhhhhc
Confidence 344555555544 559999999999999998886 456666655 44444433 333 35556666655
Q ss_pred CCCCCCCeeEEEecccccccccc-HHHHHHHHHhcccCCeEEEEEe
Q 006905 269 LPYPSRAFDMAHCSRCLIPWNQF-GGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 269 Lpf~d~sFDlV~~~~~l~h~~~~-~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
++ ++||.|++..+++|+... ...+++++.|+|||||.+++..
T Consensus 124 ~~---~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~ 166 (285)
T d1kpga_ 124 FD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHT 166 (285)
T ss_dssp CC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred cc---ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEE
Confidence 54 689999999999998643 3789999999999999999853
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.24 E-value=5.7e-11 Score=112.47 Aligned_cols=120 Identities=18% Similarity=0.112 Sum_probs=90.2
Q ss_pred CCCCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC--CeEEEE
Q 006905 188 TMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV--PALIGV 263 (626)
Q Consensus 188 t~F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~--~~~~~v 263 (626)
..++....+.-..+...+...+ +.+|||+|||+|.++..|+.. .|+++|+++.++..+.. .+++.++ .+.+..
T Consensus 12 ~~~~~t~~eir~~il~~l~~~~--g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~-n~~~~gl~~~v~~~~ 88 (186)
T d1l3ia_ 12 SVPGPTAMEVRCLIMCLAEPGK--NDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEM-NLQRHGLGDNVTLME 88 (186)
T ss_dssp TSCCCCCHHHHHHHHHHHCCCT--TCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHH-HHHHTTCCTTEEEEE
T ss_pred CCCCCChHHHHHHHHHhcCCCC--CCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHH-HHHHcCCCcceEEEE
Confidence 3344455566566666665554 559999999999999999887 68899998866554443 3445565 467788
Q ss_pred cccccCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 264 LAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 264 ~d~~~Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+|+..++++...||+|++.....+ ...++.++.++|||||++++...
T Consensus 89 gda~~~~~~~~~~D~v~~~~~~~~----~~~~~~~~~~~LkpgG~lvi~~~ 135 (186)
T d1l3ia_ 89 GDAPEALCKIPDIDIAVVGGSGGE----LQEILRIIKDKLKPGGRIIVTAI 135 (186)
T ss_dssp SCHHHHHTTSCCEEEEEESCCTTC----HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CchhhcccccCCcCEEEEeCcccc----chHHHHHHHHHhCcCCEEEEEee
Confidence 888777777889999999876533 36789999999999999998753
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.23 E-value=4.9e-12 Score=123.99 Aligned_cols=119 Identities=14% Similarity=0.186 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-----cceeccc
Q 006905 448 ELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-----VGTYTNW 522 (626)
Q Consensus 448 ~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-----i~~~~~~ 522 (626)
..+...+..+.+++..... ....+|||+|||+|.++..|++++. +|+++|.+++|+..+.++.- +..+..=
T Consensus 21 ~~~~~~~~~~~~~~~~~~~-~~~~~iLDiGcGtG~~~~~l~~~~~---~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d 96 (251)
T d1wzna1 21 ERVKAEIDFVEEIFKEDAK-REVRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGD 96 (251)
T ss_dssp HTHHHHHHHHHHHHHHTCS-SCCCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESC
T ss_pred hhHHHHHHHHHHHHHHhcC-CCCCEEEEeCCCCCccchhhcccce---EEEEEeeccccccccccccccccccchheehh
Confidence 3344445556666655555 5567899999999999999999986 89999999999999887742 2333211
Q ss_pred cccCCCCCCccceeeec-cccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 523 CEAMSTYPRTYDLIHAD-SVFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 523 ~e~~~~yp~t~Dlih~~-~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
.+.+ +++++||+|.|. .+|.+.. ..++..+|.++.|+|||||.+|+..
T Consensus 97 ~~~l-~~~~~fD~I~~~~~~~~~~~-~~~~~~~L~~~~~~LkpgG~lii~~ 145 (251)
T d1wzna1 97 VLEI-AFKNEFDAVTMFFSTIMYFD-EEDLRKLFSKVAEALKPGGVFITDF 145 (251)
T ss_dssp GGGC-CCCSCEEEEEECSSGGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhc-ccccccchHhhhhhhhhcCC-hHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 2333 245999999985 5677653 2466789999999999999999853
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.22 E-value=5.7e-12 Score=120.90 Aligned_cols=116 Identities=17% Similarity=0.299 Sum_probs=86.1
Q ss_pred HHHHHHHHHhhhh-cCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-cc-eeccccccCC
Q 006905 451 KKRLSYYKTMNNQ-LGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-VG-TYTNWCEAMS 527 (626)
Q Consensus 451 ~~~v~~y~~~~~~-~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-i~-~~~~~~e~~~ 527 (626)
+.++.+...++.. |.+ + .+|||+|||+|.++..|++.+. +|+++|.+++|++.+.++-. .+ .....+....
T Consensus 21 ~~~~~~~~~~~~~~l~~-~--~~ILDiGcG~G~~~~~la~~~~---~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~ 94 (226)
T d1ve3a1 21 RSRIETLEPLLMKYMKK-R--GKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDAR 94 (226)
T ss_dssp HHHHHHHHHHHHHSCCS-C--CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTT
T ss_pred HHHHHHHHHHHHHhcCC-C--CEEEEECCCcchhhhhHhhhhc---ccccccccccchhhhhhhhccccccccccccccc
Confidence 3445554555433 444 3 3699999999999999999987 89999999999999887632 01 1111233343
Q ss_pred C--CC-CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 528 T--YP-RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 528 ~--yp-~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
. ++ ++||+|.|..+|.+..+ .++..+|.|+.|+|||||.++|.+.
T Consensus 95 ~l~~~~~~fD~I~~~~~l~~~~~-~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 95 KLSFEDKTFDYVIFIDSIVHFEP-LELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp SCCSCTTCEEEEEEESCGGGCCH-HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccCcCceEEEEecchhhCCh-hHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 3 33 99999999999998764 3677899999999999999999764
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.22 E-value=1.1e-11 Score=120.52 Aligned_cols=99 Identities=9% Similarity=0.153 Sum_probs=83.9
Q ss_pred eeEEeccCchhhHhhhhhCC----CeEEEEeccCccCcccHHHHHHh----cccceeccccccCCCCC-Cccceeeeccc
Q 006905 471 RNILDMNAHLGGFAAALIDF----PVWVMNVVPAEAKINTLGVIYER----GLVGTYTNWCEAMSTYP-RTYDLIHADSV 541 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~----~v~~mnv~~~~~~~~~l~~~~~r----gli~~~~~~~e~~~~yp-~t~Dlih~~~~ 541 (626)
.+|||+|||+|..+..|++. +. +|+++|.|+.|++.|.++ +....++-.+..+..+| ..+|++.|..+
T Consensus 41 ~~vLDlGCGtG~~~~~l~~~~~~~~~---~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~ 117 (225)
T d1im8a_ 41 SNVYDLGCSRGAATLSARRNINQPNV---KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 117 (225)
T ss_dssp CEEEEESCTTCHHHHHHHHTCCCSSC---EEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESC
T ss_pred CEEEEeccchhhHHHHHHHhhcCCCC---ceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeee
Confidence 47999999999999888753 44 899999999999999886 55566666678888888 99999999998
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
+.+... -+...+|.||.|+|||||.+|+.|.
T Consensus 118 l~~~~~-~d~~~~l~~i~~~LkpgG~li~~~~ 148 (225)
T d1im8a_ 118 LQFLPP-EDRIALLTKIYEGLNPNGVLVLSEK 148 (225)
T ss_dssp GGGSCG-GGHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccCh-hhHHHHHHHHHHhCCCCceeecccc
Confidence 887643 3778999999999999999999863
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=1.9e-12 Score=127.54 Aligned_cols=114 Identities=16% Similarity=0.075 Sum_probs=77.5
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCe-----------------
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPA----------------- 259 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~----------------- 259 (626)
.+.+++......+.+|||||||+|.++..++.. .|+++|+++.++..++.+.. +.....
T Consensus 40 ~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 118 (257)
T d2a14a1 40 CLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLK-KEPGAYDWTPAVKFACELEGNSG 118 (257)
T ss_dssp HHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHH-TCTTCCCCHHHHHHHHHHTTCGG
T ss_pred HHHHHhcccCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHh-hccccchhhhHHHHHHHhccccc
Confidence 344444434445678999999999888777665 58889988866655443322 111110
Q ss_pred --------------EEEE----cccccCCCCCCCeeEEEeccccccccc---cHHHHHHHHHhcccCCeEEEEEeC
Q 006905 260 --------------LIGV----LAAERLPYPSRAFDMAHCSRCLIPWNQ---FGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 260 --------------~~~v----~d~~~Lpf~d~sFDlV~~~~~l~h~~~---~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.... .+....++++++||+|++..+++|... +...+++++.|+|||||+|++...
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~ 194 (257)
T d2a14a1 119 RWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVT 194 (257)
T ss_dssp GHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEe
Confidence 0010 112234677899999999999988764 336799999999999999999864
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=8.8e-12 Score=124.99 Aligned_cols=101 Identities=11% Similarity=-0.017 Sum_probs=67.4
Q ss_pred CEEEEeCCCCchHHHHHhhC----------CcEEEeCCccchHHHHHHHHHHcCCC-eE--EEEcccc------cCCCCC
Q 006905 213 RTAIDTGCGVASWGAYLLSR----------NIITMSFAPRDTHEAQVQFALERGVP-AL--IGVLAAE------RLPYPS 273 (626)
Q Consensus 213 ~~VLDIGCGtG~~a~~La~~----------~V~avdis~~dls~a~i~~A~erg~~-~~--~~v~d~~------~Lpf~d 273 (626)
.+|||||||+|.++..|++. .++++|+++.++..+..+.+....++ +. +...+.+ ..++++
T Consensus 42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (280)
T d1jqea_ 42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKEL 121 (280)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSC
T ss_pred CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCC
Confidence 47999999999988777653 24566665543333222222111222 22 2222222 235678
Q ss_pred CCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 274 RAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 274 ~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++||+|+|.++++|+ .++..+|+++.++|+|||++++..+
T Consensus 122 ~~fD~I~~~~~l~~~-~d~~~~l~~l~~~LkpgG~l~i~~~ 161 (280)
T d1jqea_ 122 QKWDFIHMIQMLYYV-KDIPATLKFFHSLLGTNAKMLIIVV 161 (280)
T ss_dssp CCEEEEEEESCGGGC-SCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CceeEEEEccceecC-CCHHHHHHHHHhhCCCCCEEEEEEe
Confidence 999999999999655 4578999999999999999999764
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.21 E-value=6.3e-12 Score=125.32 Aligned_cols=139 Identities=16% Similarity=0.116 Sum_probs=100.2
Q ss_pred HHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc----cceeccccccCCCCC
Q 006905 455 SYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL----VGTYTNWCEAMSTYP 530 (626)
Q Consensus 455 ~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl----i~~~~~~~e~~~~yp 530 (626)
.....++..+.. ....+|||+|||.|.++..|+.+..- +|..+|.++.|++.+.++-- +..++.=.+.|..-+
T Consensus 80 ~~s~~fl~~l~~-~~~~~vLD~GcG~G~~t~~ll~~~~~--~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~ 156 (254)
T d1xtpa_ 80 EGSRNFIASLPG-HGTSRALDCGAGIGRITKNLLTKLYA--TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPP 156 (254)
T ss_dssp HHHHHHHHTSTT-CCCSEEEEETCTTTHHHHHTHHHHCS--EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCS
T ss_pred HHHHHHHhhCCC-CCCCeEEEecccCChhhHHHHhhcCc--eEEEEcCCHHHHHhhhccccccccceeEEccccccccCC
Confidence 344555555555 56778999999999999998866321 67888999999999987632 333332223333223
Q ss_pred CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcChH----------------HHHHHHHHHHhCCCeeEEe
Q 006905 531 RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDVD----------------ELVKVKRIIDALKWQSQIV 594 (626)
Q Consensus 531 ~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~~----------------~~~~~~~~~~~l~w~~~~~ 594 (626)
++||+|+|.++|.|..+. ++..+|.++.|+|||||+++|.|... ....++++++.--+++.-.
T Consensus 157 ~~fD~I~~~~vl~hl~d~-d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~ 235 (254)
T d1xtpa_ 157 NTYDLIVIQWTAIYLTDA-DFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKE 235 (254)
T ss_dssp SCEEEEEEESCGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEE
T ss_pred CccceEEeeccccccchh-hhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEE
Confidence 899999999999998753 45688999999999999999975421 2567888888777776544
Q ss_pred ecC
Q 006905 595 DHE 597 (626)
Q Consensus 595 ~~e 597 (626)
+.+
T Consensus 236 ~~q 238 (254)
T d1xtpa_ 236 AFQ 238 (254)
T ss_dssp EEC
T ss_pred Eee
Confidence 433
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=7e-12 Score=123.41 Aligned_cols=98 Identities=11% Similarity=0.058 Sum_probs=78.1
Q ss_pred cCCCCCceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHh----cc---cceec-cccccCCCCCCccc
Q 006905 464 LGQSGRYRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYER----GL---VGTYT-NWCEAMSTYPRTYD 534 (626)
Q Consensus 464 ~~~~~~~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~-~~~e~~~~yp~t~D 534 (626)
|.+ -.+|||+|||.|+++.+|++. ++ .|+++|.++.|++.+.++ |+ +...+ |+.+ + ..+.+||
T Consensus 31 l~p---g~~VLDiGCG~G~~~~~la~~~~~---~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~-~-~~~~~fD 102 (245)
T d1nkva_ 31 MKP---GTRILDLGSGSGEMLCTWARDHGI---TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG-Y-VANEKCD 102 (245)
T ss_dssp CCT---TCEEEEETCTTCHHHHHHHHHTCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT-C-CCSSCEE
T ss_pred CCC---CCEEEEEcCCCCHHHHHHHHhcCC---EEEEEecccchhhHHHHHHHHhhccccchhhhhHHhh-c-cccCcee
Confidence 555 356999999999999999875 65 578999999999988776 65 33333 2222 1 2239999
Q ss_pred eeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 535 LIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 535 lih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
+|+|.+++.+..+ .+.+|.||.|+|||||.+++.+
T Consensus 103 ~v~~~~~~~~~~d---~~~~l~~~~r~LkPGG~l~i~~ 137 (245)
T d1nkva_ 103 VAACVGATWIAGG---FAGAEELLAQSLKPGGIMLIGE 137 (245)
T ss_dssp EEEEESCGGGTSS---SHHHHHHHTTSEEEEEEEEEEE
T ss_pred EEEEEehhhccCC---HHHHHHHHHHHcCcCcEEEEEe
Confidence 9999999998874 5899999999999999999975
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=2.4e-11 Score=117.85 Aligned_cols=125 Identities=20% Similarity=0.202 Sum_probs=93.7
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc------cceeccccccCCCCCCccceeeeccc
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL------VGTYTNWCEAMSTYPRTYDLIHADSV 541 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl------i~~~~~~~e~~~~yp~t~Dlih~~~~ 541 (626)
.....|||+|||.|.++..|+++... +|+.+|.+++|++.|.++.- +..++.=.+.+..-+.+||+|++..+
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~ 136 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLLLPLFR--EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV 136 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTTCS--EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred CCCCEEEEeccCCCHhhHHHHHhcCC--EEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 33567999999999999998766442 78899999999999988742 12222212333322499999999999
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh----------H-----HHHHHHHHHHhCCCeeEEee
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFRDDV----------D-----ELVKVKRIIDALKWQSQIVD 595 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~----------~-----~~~~~~~~~~~l~w~~~~~~ 595 (626)
+.|..+. ++..+|.++.|+|||||.+++.|.. + ....++++++.--+++.-..
T Consensus 137 l~h~~~~-~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~ 204 (222)
T d2ex4a1 137 IGHLTDQ-HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEE 204 (222)
T ss_dssp GGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred cccchhh-hhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEE
Confidence 9998753 4567999999999999999998532 1 36788899988888765433
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.18 E-value=1.5e-11 Score=124.39 Aligned_cols=115 Identities=16% Similarity=0.223 Sum_probs=77.6
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCC-----eEEEEcccc
Q 006905 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVP-----ALIGVLAAE 267 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~-----~~~~v~d~~ 267 (626)
..+.+.+.+++...+ +.+|||||||+|.++..|+++ .|+++|+++.++..+..+.. .++.. ..+..++..
T Consensus 42 ~~~~~~l~~~l~~~~--~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~-~~~~~~~~~~~~~~~~~~~ 118 (292)
T d1xvaa_ 42 AEYKAWLLGLLRQHG--CHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERW-NRRKEPAFDKWVIEEANWL 118 (292)
T ss_dssp HHHHHHHHHHHHHTT--CCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH-HTTTSHHHHTCEEEECCGG
T ss_pred HHHHHHHHHHhhhcC--CCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHH-hcccccccceeeeeecccc
Confidence 445566667776554 458999999999999999998 57788777765554433322 22221 223333322
Q ss_pred ----cCCCCCCCeeEEEecc-ccccccc------cHHHHHHHHHhcccCCeEEEEEe
Q 006905 268 ----RLPYPSRAFDMAHCSR-CLIPWNQ------FGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 268 ----~Lpf~d~sFDlV~~~~-~l~h~~~------~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
.+|. .++||+|+|.. ++.|+.. +...+|+++.|+|||||+|++..
T Consensus 119 ~~~~~~~~-~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 174 (292)
T d1xvaa_ 119 TLDKDVPA-GDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 174 (292)
T ss_dssp GHHHHSCC-TTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccccCC-CCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence 2333 46899999854 6666643 23679999999999999999974
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=2.5e-11 Score=118.69 Aligned_cols=113 Identities=14% Similarity=0.091 Sum_probs=75.9
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccc--cC
Q 006905 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAE--RL 269 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~--~L 269 (626)
..+.+.+.+.+. ..+.+|||||||+|..+.++++. .++++|+++.++..+. +.+...+..+.....+.. ..
T Consensus 40 ~~~~~~la~~~~---~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~ 115 (229)
T d1zx0a1 40 TPYMHALAAAAS---SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLR-DWAPRQTHKVIPLKGLWEDVAP 115 (229)
T ss_dssp HHHHHHHHHHHT---TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHH-HHGGGCSSEEEEEESCHHHHGG
T ss_pred HHHHHHHHHhhc---cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHH-HHhhhccccccccccccccccc
Confidence 445555555553 23568999999999999999886 5778888775443322 222233344445444433 34
Q ss_pred CCCCCCeeEEEe-----ccccccccccHHHHHHHHHhcccCCeEEEEE
Q 006905 270 PYPSRAFDMAHC-----SRCLIPWNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 270 pf~d~sFDlV~~-----~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
++++++||.|+. ...++|+.+ ...+++++.|+|||||.|++.
T Consensus 116 ~~~~~~fD~i~fD~~~~~~~~~~~~~-~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 116 TLPDGHFDGILYDTYPLSEETWHTHQ-FNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp GSCTTCEEEEEECCCCCBGGGTTTHH-HHHHHHTHHHHEEEEEEEEEC
T ss_pred ccccccccceeecccccccccccccC-HHHHHHHHHHHcCCCcEEEEE
Confidence 577889999984 444545443 578999999999999999874
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.14 E-value=4.6e-11 Score=115.43 Aligned_cols=99 Identities=15% Similarity=0.189 Sum_probs=78.2
Q ss_pred CEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEcccccCC--CCCCCeeEEEecccc
Q 006905 213 RTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAERLP--YPSRAFDMAHCSRCL 285 (626)
Q Consensus 213 ~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~~Lp--f~d~sFDlV~~~~~l 285 (626)
..|||||||+|.++..|++. .++++|+++..+..+. +.+.+.++. +.+..+|+..+. ++++++|.|++.+..
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~-~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~ 109 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAV-QKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD 109 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHH-HHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred ceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHH-HHHHHHhccCchhcccchhhhhcccCchhhhcccccccc
Confidence 47999999999999999886 6889998886665443 344455664 667777877765 889999999988766
Q ss_pred ccccccH--------HHHHHHHHhcccCCeEEEEEe
Q 006905 286 IPWNQFG--------GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 286 ~h~~~~~--------~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+|+... ..+|.++.|+|||||.|+|.+
T Consensus 110 -P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 110 -PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp -CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred -ccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 666542 479999999999999999974
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.14 E-value=6.9e-11 Score=117.18 Aligned_cols=99 Identities=19% Similarity=0.308 Sum_probs=72.5
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCCCCCCCeeEEEecccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lpf~d~sFDlV~~~~~l 285 (626)
.++|||||||+|.++..|+++ .++++|+ +..+..+. +...+.+. .+.+..+|... +. ..+||+|+++.++
T Consensus 81 ~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~-~~~~~~~~~~rv~~~~~D~~~-~~-~~~~D~v~~~~vl 156 (253)
T d1tw3a2 81 VRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTAR-SYLKDEGLSDRVDVVEGDFFE-PL-PRKADAIILSFVL 156 (253)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHH-HHHHHTTCTTTEEEEECCTTS-CC-SSCEEEEEEESCG
T ss_pred CCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHH-HHHHHhhcccchhhccccchh-hc-ccchhheeecccc
Confidence 569999999999999999986 3556666 33444333 33334443 36677667533 22 3579999999999
Q ss_pred ccccccH-HHHHHHHHhcccCCeEEEEEeC
Q 006905 286 IPWNQFG-GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 286 ~h~~~~~-~~~L~Ei~RvLKPGG~lvis~p 314 (626)
|||.++. ..+|+++.|+|||||.|+|...
T Consensus 157 h~~~d~~~~~~L~~~~~~LkPGG~l~i~e~ 186 (253)
T d1tw3a2 157 LNWPDHDAVRILTRCAEALEPGGRILIHER 186 (253)
T ss_dssp GGSCHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ccCCchhhHHHHHHHHHhcCCCcEEEEEec
Confidence 9887643 5789999999999999999764
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.13 E-value=2.4e-11 Score=119.31 Aligned_cols=96 Identities=20% Similarity=0.286 Sum_probs=78.4
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc-cceeccccccCCCC--CCccceeeec-cc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL-VGTYTNWCEAMSTY--PRTYDLIHAD-SV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl-i~~~~~~~e~~~~y--p~t~Dlih~~-~~ 541 (626)
-++|||+|||+|.++..|++.+. +|+++|.|++||++|.+| |+ +..+ |..+..+ +++||+|-|. .+
T Consensus 38 ~~~vLDiGCG~G~~~~~l~~~g~---~v~GvD~S~~ml~~A~~~~~~~~~~v~~~---~~d~~~~~~~~~fD~i~~~~~~ 111 (246)
T d1y8ca_ 38 FDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLA---CQDISNLNINRKFDLITCCLDS 111 (246)
T ss_dssp TTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEE---CCCGGGCCCSCCEEEEEECTTG
T ss_pred CCeEEEEeCcCCHHHHHHHHhCC---ccEeeccchhhhhhccccccccCccceee---ccchhhhcccccccccceeeee
Confidence 35799999999999999999987 789999999999998876 33 2233 3444444 4899999875 67
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
|.+..+.-++..+|.+|.|+|+|||.||+.
T Consensus 112 ~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 141 (246)
T d1y8ca_ 112 TNYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp GGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred eeccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 888776667788999999999999999974
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.13 E-value=3.6e-11 Score=120.54 Aligned_cols=93 Identities=16% Similarity=0.142 Sum_probs=71.3
Q ss_pred CCceeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHHHhcc-cceeccccccCCCCCCccceeeecccccc
Q 006905 468 GRYRNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIYERGL-VGTYTNWCEAMSTYPRTYDLIHADSVFSL 544 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~~rgl-i~~~~~~~e~~~~yp~t~Dlih~~~~f~~ 544 (626)
..-.+|||+|||.|.++..|++. ++ +++++|.++.++..+.++.- +.....=.+.++.-+.+||+|++..++.+
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~---~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~ 159 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEI---TTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK 159 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTS---EEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCC---EEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH
Confidence 55678999999999999999876 44 68899999999999988864 33333223333322399999998655433
Q ss_pred CCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 545 YKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 545 ~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
+.|+.|||||||++++..+
T Consensus 160 ----------~~e~~rvLkpgG~l~~~~p 178 (268)
T d1p91a_ 160 ----------AEELARVVKPGGWVITATP 178 (268)
T ss_dssp ----------HHHHHHHEEEEEEEEEEEE
T ss_pred ----------HHHHHHHhCCCcEEEEEee
Confidence 6799999999999999864
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.11 E-value=8.4e-11 Score=114.11 Aligned_cols=108 Identities=10% Similarity=0.054 Sum_probs=78.5
Q ss_pred HHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccC
Q 006905 196 AYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERL 269 (626)
Q Consensus 196 ~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~L 269 (626)
.....+.+.+.+.+ +.+|||||||+|.++..|++. .|+++|+++..+..+..+.. ..+. +..+...|....
T Consensus 62 ~~~a~~l~~l~l~~--g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~-~~~~~n~~~~~~d~~~~ 138 (213)
T d1dl5a1 62 SLMALFMEWVGLDK--GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVE-RLGIENVIFVCGDGYYG 138 (213)
T ss_dssp HHHHHHHHHTTCCT--TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHH-HTTCCSEEEEESCGGGC
T ss_pred hhhHHHHHhhhccc--cceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHh-hhcccccccccCchHHc
Confidence 34445666666555 449999999999999988764 48899998865554444333 3344 455666777777
Q ss_pred CCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 270 PYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 270 pf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
++.+++||+|++..++++.+ .++.++|||||.+++..
T Consensus 139 ~~~~~~fD~I~~~~~~~~~p-------~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 139 VPEFSPYDVIFVTVGVDEVP-------ETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp CGGGCCEEEEEECSBBSCCC-------HHHHHHEEEEEEEEEEB
T ss_pred cccccchhhhhhhccHHHhH-------HHHHHhcCCCcEEEEEE
Confidence 77788999999999886543 24678899999999864
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.11 E-value=6.1e-11 Score=120.57 Aligned_cols=99 Identities=12% Similarity=0.110 Sum_probs=78.3
Q ss_pred ceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHH----hcccceeccccccCCCCCCccceeeecccccc
Q 006905 470 YRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYE----RGLVGTYTNWCEAMSTYPRTYDLIHADSVFSL 544 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~----rgli~~~~~~~e~~~~yp~t~Dlih~~~~f~~ 544 (626)
-..|||+|||.||++.+++++ |+ +|+.++.+++++..+.+ .|+....+.-+..+.+.+.+||.|.|.++|.|
T Consensus 62 G~~VLDiGCG~G~~~~~~a~~~g~---~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~fD~i~sie~~eH 138 (291)
T d1kpia_ 62 GMTLLDIGCGWGSTMRHAVAEYDV---NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDRIVSLGAFEH 138 (291)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSEEEEESCGGG
T ss_pred CCEEEEecCcchHHHHHHHHhcCc---ceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccccccccceEeechhHHh
Confidence 557999999999999999854 76 78888999888776554 46655444333444445699999999999999
Q ss_pred CCCC------CCHHHHHHHhhhhccCCcEEEEE
Q 006905 545 YKDR------CETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 545 ~~~~------c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
..+. -+.+.++.++.|+|||||.+++.
T Consensus 139 ~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~ 171 (291)
T d1kpia_ 139 FADGAGDAGFERYDTFFKKFYNLTPDDGRMLLH 171 (291)
T ss_dssp TTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEE
T ss_pred cchhhhhhHHHHHHHHHHHHHHhCCCCCceEEE
Confidence 8653 24678999999999999999985
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.10 E-value=3.2e-11 Score=117.26 Aligned_cols=94 Identities=19% Similarity=0.264 Sum_probs=76.1
Q ss_pred eEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc--cceeccccccCCCCCCccceeeeccccccCCCCC
Q 006905 472 NILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL--VGTYTNWCEAMSTYPRTYDLIHADSVFSLYKDRC 549 (626)
Q Consensus 472 ~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl--i~~~~~~~e~~~~yp~t~Dlih~~~~f~~~~~~c 549 (626)
+|||+|||+|.++..|++.+. .|+.+|.++++++.+.++.- +...+.-.+.+. .+++||+|.|.++|.|..
T Consensus 23 ~VLDiGcG~G~~~~~l~~~g~---~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~-~~~~fD~I~~~~vleh~~--- 95 (225)
T d2p7ia1 23 NLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQ-LPRRYDNIVLTHVLEHID--- 95 (225)
T ss_dssp CEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCC-CSSCEEEEEEESCGGGCS---
T ss_pred cEEEEeCCCcHHHHHHHHcCC---eEEEEeCcHHHhhhhhcccccccccccccccccc-cccccccccccceeEecC---
Confidence 599999999999999998864 68999999999999987743 333442222222 259999999999999987
Q ss_pred CHHHHHHHhh-hhccCCcEEEEEc
Q 006905 550 ETEDILLEMD-RILRPEGGVIFRD 572 (626)
Q Consensus 550 ~~~~~l~E~d-RiLRPgG~~i~~d 572 (626)
+...+|.|+. |+|||||.+++.-
T Consensus 96 d~~~~l~~i~~~~Lk~gG~l~i~~ 119 (225)
T d2p7ia1 96 DPVALLKRINDDWLAEGGRLFLVC 119 (225)
T ss_dssp SHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCceEEEEe
Confidence 4588999995 9999999999973
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.08 E-value=3.7e-11 Score=114.38 Aligned_cols=95 Identities=17% Similarity=0.242 Sum_probs=76.5
Q ss_pred eEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cccceeccccccCCC--CCCccceeeeccccccC
Q 006905 472 NILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GLVGTYTNWCEAMST--YPRTYDLIHADSVFSLY 545 (626)
Q Consensus 472 ~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gli~~~~~~~e~~~~--yp~t~Dlih~~~~f~~~ 545 (626)
.|||+|||.|..+.+|++++. .|+.+|.++.+++.+.++ |+ ..++..+..+.. ++.+||+|.|..+|.+.
T Consensus 33 rvLDiGcG~G~~~~~la~~g~---~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~fD~I~~~~~~~~~ 108 (198)
T d2i6ga1 33 RTLDLGCGNGRNSLYLAANGY---DVTAWDKNPASMANLERIKAAEGL-DNLQTDLVDLNTLTFDGEYDFILSTVVMMFL 108 (198)
T ss_dssp EEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTC-TTEEEEECCTTTCCCCCCEEEEEEESCGGGS
T ss_pred cEEEECCCCCHHHHHHHHHhh---hhccccCcHHHHHHHHHHhhhccc-cchhhhheecccccccccccEEEEeeeeecC
Confidence 599999999999999999986 789999999999976543 33 222323344443 35999999999999987
Q ss_pred CCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 546 KDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 546 ~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
... ++..+|.++.|+|||||++++.
T Consensus 109 ~~~-~~~~~l~~~~~~L~pgG~~~~~ 133 (198)
T d2i6ga1 109 EAQ-TIPGLIANMQRCTKPGGYNLIV 133 (198)
T ss_dssp CTT-HHHHHHHHHHHTEEEEEEEEEE
T ss_pred CHH-HHHHHHHHHHHHcCCCcEEEEE
Confidence 653 5688999999999999999996
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.05 E-value=1.6e-10 Score=117.14 Aligned_cols=98 Identities=14% Similarity=0.180 Sum_probs=77.6
Q ss_pred ceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHH----hcccceeccccccCCCCCCccceeeecccccc
Q 006905 470 YRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYE----RGLVGTYTNWCEAMSTYPRTYDLIHADSVFSL 544 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~----rgli~~~~~~~e~~~~yp~t~Dlih~~~~f~~ 544 (626)
-..|||+|||.|++|.++++. |+ .|+.++.++.+++.+.+ .|+.+.+.--+..+...|.+||-|.+.++|.|
T Consensus 63 G~~VLDiGCG~G~~a~~~a~~~g~---~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~fD~i~si~~~eh 139 (285)
T d1kpga_ 63 GMTLLDVGCGWGATMMRAVEKYDV---NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRIVSIGAFEH 139 (285)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSEEEEESCGGG
T ss_pred CCEEEEecCcchHHHHHHHhcCCc---ceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccccceeeehhhhh
Confidence 466999999999999998765 66 67777888777776644 45544333334556667899999999999999
Q ss_pred CCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 545 YKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 545 ~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
..++ +...+|.++.|+|||||.+++.
T Consensus 140 ~~~~-~~~~~~~~~~r~LkpgG~~~l~ 165 (285)
T d1kpga_ 140 FGHE-RYDAFFSLAHRLLPADGVMLLH 165 (285)
T ss_dssp TCTT-THHHHHHHHHHHSCTTCEEEEE
T ss_pred cCch-hHHHHHHHHHhhcCCCCcEEEE
Confidence 8764 6788999999999999999974
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=1.4e-10 Score=113.82 Aligned_cols=123 Identities=7% Similarity=-0.013 Sum_probs=89.3
Q ss_pred CceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-----c-------------c-------------
Q 006905 469 RYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-----V-------------G------------- 517 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-----i-------------~------------- 517 (626)
.-.+|||+|||.|.++..+++.+. -+|+++|.++++++.+.++-- + |
T Consensus 51 ~g~~vLDlGcG~G~~~~~~~~~~~--~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d2a14a1 51 QGDTLIDIGSGPTIYQVLAACDSF--QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128 (257)
T ss_dssp CEEEEEESSCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCEEEEECCCCCHhHHHHhcccc--CcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence 356799999999999988887765 379999999999998876521 0 0
Q ss_pred ------eeccccc--cCCCCC-CccceeeeccccccCCC-CCCHHHHHHHhhhhccCCcEEEEEcChH------------
Q 006905 518 ------TYTNWCE--AMSTYP-RTYDLIHADSVFSLYKD-RCETEDILLEMDRILRPEGGVIFRDDVD------------ 575 (626)
Q Consensus 518 ------~~~~~~e--~~~~yp-~t~Dlih~~~~f~~~~~-~c~~~~~l~E~dRiLRPgG~~i~~d~~~------------ 575 (626)
...+-.. ...+++ .+||+|.+..++++... +-++..++.+|.|+|||||++|+.+...
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~ 208 (257)
T d2a14a1 129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFS 208 (257)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceecccccc
Confidence 0000011 112344 89999999988887642 2355679999999999999999975321
Q ss_pred ----HHHHHHHHHHhCCCeeEE
Q 006905 576 ----ELVKVKRIIDALKWQSQI 593 (626)
Q Consensus 576 ----~~~~~~~~~~~l~w~~~~ 593 (626)
..+.|+++++.--+++.-
T Consensus 209 ~~~~~~~~~~~~l~~aGf~v~~ 230 (257)
T d2a14a1 209 CVALEKGEVEQAVLDAGFDIEQ 230 (257)
T ss_dssp CCCCCHHHHHHHHHHTTEEEEE
T ss_pred ccCCCHHHHHHHHHHCCCEEEE
Confidence 267788888888887543
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.04 E-value=4.6e-10 Score=108.30 Aligned_cols=99 Identities=18% Similarity=0.240 Sum_probs=77.2
Q ss_pred CEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEcccccCC--CCCCCeeEEEecccc
Q 006905 213 RTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAERLP--YPSRAFDMAHCSRCL 285 (626)
Q Consensus 213 ~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~~Lp--f~d~sFDlV~~~~~l 285 (626)
..|||||||+|.++..+++. .++++|+++..+..+. +.+.+.+++ +.+..+|+..+. +++.++|.|++.+.-
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~-~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPd 111 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYAL-DKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD 111 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHH-HHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC
T ss_pred CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHH-HhhhhhccccceeeecCHHHHhhhccCCceehhcccccc
Confidence 47999999999999999886 6789998876555443 344455654 677777877765 788999999987754
Q ss_pred ccccccH--------HHHHHHHHhcccCCeEEEEEe
Q 006905 286 IPWNQFG--------GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 286 ~h~~~~~--------~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+|+... ..+|.++.|+|||||.|.+.+
T Consensus 112 -Pw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 112 -PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp -CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred -cccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 776542 579999999999999999974
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.03 E-value=4.7e-11 Score=111.49 Aligned_cols=110 Identities=11% Similarity=0.027 Sum_probs=81.9
Q ss_pred HHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-cce--------------
Q 006905 454 LSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-VGT-------------- 518 (626)
Q Consensus 454 v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-i~~-------------- 518 (626)
+..|+..+. +.+ -..|||+|||.|..+.+|+++|. +|+++|.|++|+..+.+|.- .+.
T Consensus 9 ~~~~~~~l~-~~~---~~rvLd~GCG~G~~a~~la~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (201)
T d1pjza_ 9 LQQYWSSLN-VVP---GARVLVPLCGKSQDMSWLSGQGY---HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPG 81 (201)
T ss_dssp HHHHHHHHC-CCT---TCEEEETTTCCSHHHHHHHHHCC---EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSS
T ss_pred HHHHHHHcC-CCC---CCEEEEecCcCCHHHHHHHHcCC---ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccc
Confidence 334555443 334 45799999999999999999997 89999999999999998741 000
Q ss_pred eccccccCCCC---C-CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 519 YTNWCEAMSTY---P-RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 519 ~~~~~e~~~~y---p-~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
..-.+..+... + .+||+|.+..+|.+... .+...++.+|.|+|||||.+++.
T Consensus 82 ~~~~~~d~~~l~~~~~~~~D~i~~~~~l~~l~~-~~~~~~~~~i~~~LkpgG~l~l~ 137 (201)
T d1pjza_ 82 IEIWCGDFFALTARDIGHCAAFYDRAAMIALPA-DMRERYVQHLEALMPQACSGLLI 137 (201)
T ss_dssp SEEEEECCSSSTHHHHHSEEEEEEESCGGGSCH-HHHHHHHHHHHHHSCSEEEEEEE
T ss_pred cceecccccccccccccceeEEEEEeeeEecch-hhhHHHHHHHHHhcCCCcEEEEE
Confidence 00112233332 2 78999999999988764 34578999999999999998875
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.03 E-value=6.3e-10 Score=111.38 Aligned_cols=107 Identities=16% Similarity=0.061 Sum_probs=80.1
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHc---CCCeEEEEcccccCCC
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALER---GVPALIGVLAAERLPY 271 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~er---g~~~~~~v~d~~~Lpf 271 (626)
.|..++.+.+ +.+|||+|||+|+++..|+.. .++++|+++..+..+..++.... -....+.+.|....++
T Consensus 87 ~Ii~~l~i~P--G~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~ 164 (264)
T d1i9ga_ 87 QIVHEGDIFP--GARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL 164 (264)
T ss_dssp HHHHHTTCCT--TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC
T ss_pred HHHHHhCCCC--CCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccc
Confidence 4556665555 459999999999999999875 58888887755544443332221 1346777888888899
Q ss_pred CCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 272 PSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 272 ~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++++||.|++ +.+ ++..++.++.|+|||||.|++..|
T Consensus 165 ~~~~fDaV~l-----dlp-~P~~~l~~~~~~LkpGG~lv~~~P 201 (264)
T d1i9ga_ 165 PDGSVDRAVL-----DML-APWEVLDAVSRLLVAGGVLMVYVA 201 (264)
T ss_dssp CTTCEEEEEE-----ESS-CGGGGHHHHHHHEEEEEEEEEEES
T ss_pred cCCCcceEEE-----ecC-CHHHHHHHHHhccCCCCEEEEEeC
Confidence 9999999986 333 346889999999999999999765
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.03 E-value=2.3e-10 Score=115.21 Aligned_cols=99 Identities=13% Similarity=0.127 Sum_probs=76.9
Q ss_pred CCceeEEeccCchhhHhhhhhCC---CeEEEEeccCccCcccHHHHHHhc----c-cceeccccccCCCCCCccceeeec
Q 006905 468 GRYRNILDMNAHLGGFAAALIDF---PVWVMNVVPAEAKINTLGVIYERG----L-VGTYTNWCEAMSTYPRTYDLIHAD 539 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~---~v~~mnv~~~~~~~~~l~~~~~rg----l-i~~~~~~~e~~~~yp~t~Dlih~~ 539 (626)
.+-.+|||+|||+|.++..|++. +. +|+++|.++.+++.+.++- + +...+.-.+.+ +++.+||+|+|.
T Consensus 26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~---~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~-~~~~~fD~v~~~ 101 (281)
T d2gh1a1 26 TKPVHIVDYGCGYGYLGLVLMPLLPEGS---KYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEI-ELNDKYDIAICH 101 (281)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTC---EEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTC-CCSSCEEEEEEE
T ss_pred CCcCEEEEecCcCCHHHHHHHHhCCCCC---EEEEEecchhHhhhhhcccccccccccccccccccc-cccCCceEEEEe
Confidence 44678999999999999888764 34 6889999999999887763 2 22222212222 245899999999
Q ss_pred cccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 540 SVFSLYKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 540 ~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
++|.|.. +.+.+|.+|.|+|||||++++.|.
T Consensus 102 ~~l~~~~---d~~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 102 AFLLHMT---TPETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp SCGGGCS---SHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred hhhhcCC---CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 9999887 458899999999999999999763
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.02 E-value=3.8e-10 Score=110.78 Aligned_cols=101 Identities=14% Similarity=0.138 Sum_probs=71.9
Q ss_pred CCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEccccc-CCCCCCCeeEEEeccc
Q 006905 210 GSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAER-LPYPSRAFDMAHCSRC 284 (626)
Q Consensus 210 ~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~-Lpf~d~sFDlV~~~~~ 284 (626)
.++.+|||||||+|.++..|++. .|+++|+++.++..+ .+.+..+. .......+... .++.+..+|++++...
T Consensus 73 kpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a-~~~a~~~~-ni~~i~~d~~~~~~~~~~~~~v~~i~~~ 150 (230)
T d1g8sa_ 73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMREL-LDACAERE-NIIPILGDANKPQEYANIVEKVDVIYED 150 (230)
T ss_dssp CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHH-HHHTTTCT-TEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHH-HHHHhhhc-ccceEEEeeccCcccccccceeEEeecc
Confidence 44669999999999999999885 489999988665433 22333332 34444455433 3456677887776665
Q ss_pred cccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 285 LIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 285 l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+ +..++...++.++.|+|||||+++++.
T Consensus 151 ~-~~~~~~~~~l~~~~r~LKpgG~~~i~~ 178 (230)
T d1g8sa_ 151 V-AQPNQAEILIKNAKWFLKKGGYGMIAI 178 (230)
T ss_dssp C-CSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c-cchHHHHHHHHHHHHhcccCceEEEEe
Confidence 5 444556889999999999999999974
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.02 E-value=3.8e-10 Score=112.26 Aligned_cols=99 Identities=20% Similarity=0.246 Sum_probs=71.1
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEcccccCCCCCCCeeEEEecccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAERLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~Lpf~d~sFDlV~~~~~l 285 (626)
.++|||||||+|.++..++++ .++++|+ +..+ +...+...+.+.. +.+...|... +.+ ..||+|++.+++
T Consensus 82 ~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~-~~a~~~~~~~~~~~ri~~~~~d~~~-~~p-~~~D~v~~~~vL 157 (256)
T d1qzza2 82 VRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPA-ERARRRFADAGLADRVTVAEGDFFK-PLP-VTADVVLLSFVL 157 (256)
T ss_dssp CCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-HHHHHHHHHTTCTTTEEEEECCTTS-CCS-CCEEEEEEESCG
T ss_pred CCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHH-HHHHHHHhhcCCcceeeeeeeeccc-ccc-ccchhhhccccc
Confidence 568999999999999999986 4666676 3233 2233333344432 4555555432 444 459999999999
Q ss_pred ccccccH-HHHHHHHHhcccCCeEEEEEeC
Q 006905 286 IPWNQFG-GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 286 ~h~~~~~-~~~L~Ei~RvLKPGG~lvis~p 314 (626)
|+|.++. ..+|+++.++|||||.|+|...
T Consensus 158 h~~~d~~~~~lL~~i~~~LkpgG~llI~d~ 187 (256)
T d1qzza2 158 LNWSDEDALTILRGCVRALEPGGRLLVLDR 187 (256)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cccCcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence 9997644 5789999999999999999754
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=8.7e-11 Score=117.25 Aligned_cols=117 Identities=20% Similarity=0.180 Sum_probs=77.9
Q ss_pred HHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC-C---------------
Q 006905 198 IDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV-P--------------- 258 (626)
Q Consensus 198 i~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~-~--------------- 258 (626)
+..+.+.+......+.++||||||+|.+...++.. .|+++|+++.++..++.......+. +
T Consensus 41 ~~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 120 (263)
T d2g72a1 41 LRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKG 120 (263)
T ss_dssp HHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSC
T ss_pred HHHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhcccc
Confidence 35566666555555779999999999877555443 6899999887665443322111000 0
Q ss_pred --------------eEEEEccc------ccCCCCCCCeeEEEecccccccccc---HHHHHHHHHhcccCCeEEEEEeC
Q 006905 259 --------------ALIGVLAA------ERLPYPSRAFDMAHCSRCLIPWNQF---GGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 259 --------------~~~~v~d~------~~Lpf~d~sFDlV~~~~~l~h~~~~---~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
......|. ...++..++||+|++.++++|.+.+ ...+++++.++|||||+|++.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~ 199 (263)
T d2g72a1 121 ECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA 199 (263)
T ss_dssp CCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred chhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecc
Confidence 01112232 1223456789999999999877643 36789999999999999999865
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.00 E-value=4.3e-10 Score=106.87 Aligned_cols=136 Identities=15% Similarity=0.165 Sum_probs=94.2
Q ss_pred cCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc----cceeccccccCCCCC-Cccc
Q 006905 464 LGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL----VGTYTNWCEAMSTYP-RTYD 534 (626)
Q Consensus 464 ~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl----i~~~~~~~e~~~~yp-~t~D 534 (626)
+.. ....+|||+|||+|.++.+|++..- +|..+|.++.++..+.++ ++ +.+. ++..+..++ .+||
T Consensus 48 l~~-~~~~~VLDiGcG~G~~~~~la~~~~---~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~--~~d~~~~~~~~~fD 121 (194)
T d1dusa_ 48 VVV-DKDDDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNLDNYDIRVV--HSDLYENVKDRKYN 121 (194)
T ss_dssp CCC-CTTCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEE--ECSTTTTCTTSCEE
T ss_pred CCc-CCCCeEEEEeecCChhHHHHHhhcc---ccceeeeccccchhHHHHHHHhCCccceEEEE--EcchhhhhccCCce
Confidence 444 4567899999999999999998754 788999999999988764 33 2222 233444444 8999
Q ss_pred eeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC-hHHHHHHHHHHHhCCCeeEEeecCCCCCCcceEEEEEe
Q 006905 535 LIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDD-VDELVKVKRIIDALKWQSQIVDHEDGPLEREKLLFAVK 611 (626)
Q Consensus 535 lih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~-~~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K 611 (626)
+|.++..|....+ .++.++.++.|+|+|||.+++... ......+...++..-+++..+... ..-+||-++|
T Consensus 122 ~Ii~~~p~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~f~~~~~~~~~----~gf~vl~a~K 193 (194)
T d1dusa_ 122 KIITNPPIRAGKE--VLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTIK----GGYRVLKSKK 193 (194)
T ss_dssp EEEECCCSTTCHH--HHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEEEEEE----TTEEEEEEEC
T ss_pred EEEEcccEEecch--hhhhHHHHHHHhcCcCcEEEEEEeCcCCHHHHHHHHHHhCCcEEEEEec----CCcEEEEEEE
Confidence 9999888754331 246789999999999999877532 233445555555555565544322 3457888877
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=7.5e-10 Score=112.82 Aligned_cols=113 Identities=12% Similarity=0.073 Sum_probs=80.4
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccC
Q 006905 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERL 269 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~L 269 (626)
+.|.+.|.+...... +.+|||||||+|.++..++++ .|+++|.++.... ..+.+.+.+. .+.+..++...+
T Consensus 21 ~~y~~ai~~~~~~~~--~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~--a~~~~~~~~~~~~i~~~~~~~~~l 96 (311)
T d2fyta1 21 ESYRDFIYQNPHIFK--DKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ--AMDIIRLNKLEDTITLIKGKIEEV 96 (311)
T ss_dssp HHHHHHHHHCGGGTT--TCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH--HHHHHHHTTCTTTEEEEESCTTTS
T ss_pred HHHHHHHHhccccCC--cCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH--HHHHHHHhCCCccceEEEeeHHHh
Confidence 445555555443333 458999999999999988886 5889998874332 2233334433 467777889999
Q ss_pred CCCCCCeeEEEecccccccccc--HHHHHHHHHhcccCCeEEEE
Q 006905 270 PYPSRAFDMAHCSRCLIPWNQF--GGIYLIEVDRVLRPGGYWIL 311 (626)
Q Consensus 270 pf~d~sFDlV~~~~~l~h~~~~--~~~~L~Ei~RvLKPGG~lvi 311 (626)
++++++||+|+|....++.... ...++....|+|||||+++-
T Consensus 97 ~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 97 HLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp CCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred cCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 9999999999997655443322 25778888999999999975
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=98.99 E-value=7.3e-11 Score=116.67 Aligned_cols=102 Identities=15% Similarity=0.050 Sum_probs=76.3
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-------cceeccccccCCCCC-Cccceeeeccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-------VGTYTNWCEAMSTYP-RTYDLIHADSV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-------i~~~~~~~e~~~~yp-~t~Dlih~~~~ 541 (626)
-.+|||+|||.|+.+..+++.+.. +|+++|.++.|++.|.+|.. +..+..=+......+ .+||+|.|..+
T Consensus 25 ~~~VLDlGCG~G~~~~~~~~~~~~--~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~ 102 (252)
T d1ri5a_ 25 GDSVLDLGCGKGGDLLKYERAGIG--EYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS 102 (252)
T ss_dssp TCEEEEETCTTTTTHHHHHHHTCS--EEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred cCEEEEecccCcHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcce
Confidence 457999999999999999887652 78999999999999988743 112221011112223 79999999998
Q ss_pred cccCC-CCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 542 FSLYK-DRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 542 f~~~~-~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
+.+.- +.-++..+|.++.|+|||||++|++-.
T Consensus 103 l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~ 135 (252)
T d1ri5a_ 103 FHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 135 (252)
T ss_dssp GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred eeecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence 88763 333566899999999999999998643
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.99 E-value=4.7e-10 Score=108.54 Aligned_cols=99 Identities=11% Similarity=0.032 Sum_probs=69.7
Q ss_pred CCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCC---CeeEEEec
Q 006905 210 GSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSR---AFDMAHCS 282 (626)
Q Consensus 210 ~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~---sFDlV~~~ 282 (626)
.++.+|||+|||+|.++.+|++. .|+++|+++.++..+. +.+..++ .+.+...+....+.... .+|+|++.
T Consensus 55 kpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~-~~a~~~~-ni~~i~~d~~~~~~~~~~~~~vd~v~~~ 132 (209)
T d1nt2a_ 55 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLL-ELVRERN-NIIPLLFDASKPWKYSGIVEKVDLIYQD 132 (209)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHH-HHHHHCS-SEEEECSCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHH-HHhhccC-CceEEEeeccCccccccccceEEEEEec
Confidence 34569999999999999988874 4999999997766443 3444443 45666666655544333 35555443
Q ss_pred cccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 283 RCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 283 ~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+.|. .+...++.++.|+|||||++++..
T Consensus 133 --~~~~-~~~~~~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 133 --IAQK-NQIEILKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp --CCST-THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --ccCh-hhHHHHHHHHHHHhccCCeEEEEE
Confidence 3233 345789999999999999999974
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.98 E-value=8.3e-11 Score=118.75 Aligned_cols=101 Identities=17% Similarity=0.220 Sum_probs=74.5
Q ss_pred CceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc----cc-----eec--ccccc--CCCCCCccce
Q 006905 469 RYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL----VG-----TYT--NWCEA--MSTYPRTYDL 535 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl----i~-----~~~--~~~e~--~~~yp~t~Dl 535 (626)
..++|||+|||+|.++..|++.+. +|+++|.|++||..+.++.. .. ... +|-.. -..+..+||+
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~g~---~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~ 132 (292)
T d1xvaa_ 56 GCHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDA 132 (292)
T ss_dssp TCCEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHcCC---eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceE
Confidence 356899999999999999999986 89999999999998876532 11 111 12111 0123389999
Q ss_pred eeec-cccccCCCC----CCHHHHHHHhhhhccCCcEEEEEc
Q 006905 536 IHAD-SVFSLYKDR----CETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 536 ih~~-~~f~~~~~~----c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
|.|. .+|.|..+. -++..+|.|+.|+|||||.|||.-
T Consensus 133 v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 174 (292)
T d1xvaa_ 133 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 174 (292)
T ss_dssp EEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence 9875 477776532 245679999999999999999953
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.97 E-value=9.4e-10 Score=113.07 Aligned_cols=98 Identities=15% Similarity=0.153 Sum_probs=74.4
Q ss_pred CCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEcccccCCCCCCCeeEEEeccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAERLPYPSRAFDMAHCSRCLI 286 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~ 286 (626)
+.+|||||||+|.++..++++ .|+++|.++ +. ..+.+.+.+++. .+.+..++...+++++++||+|++....+
T Consensus 39 ~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~-~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~ 116 (328)
T d1g6q1_ 39 DKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-II-EMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HH-HHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred cCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HH-HHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecce
Confidence 458999999999999888876 488899876 33 233444445554 46777788999999999999999976654
Q ss_pred ccc--ccHHHHHHHHHhcccCCeEEEE
Q 006905 287 PWN--QFGGIYLIEVDRVLRPGGYWIL 311 (626)
Q Consensus 287 h~~--~~~~~~L~Ei~RvLKPGG~lvi 311 (626)
+.. .....++.++.|+|||||.++=
T Consensus 117 ~~~~e~~~~~~~~a~~r~LkpgG~iiP 143 (328)
T d1g6q1_ 117 FLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeccchhHHHHHHHHHhccCCCeEEEe
Confidence 333 2347789999999999998863
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.94 E-value=1.2e-09 Score=111.76 Aligned_cols=98 Identities=14% Similarity=0.133 Sum_probs=75.5
Q ss_pred CCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEcccccCCCCCCCeeEEEeccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAERLPYPSRAFDMAHCSRCLI 286 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~Lpf~d~sFDlV~~~~~l~ 286 (626)
+++|||||||+|.++..++++ .|+++|.++. . ..+.+.+..++.. +.+..++...++++.++||+|++....+
T Consensus 34 ~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~-~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~ 111 (316)
T d1oria_ 34 DKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-S-DYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 111 (316)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-H-HHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred cCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-H-hhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence 458999999999999888886 4889998774 3 3344455555543 6777888999999999999999976654
Q ss_pred cccc--cHHHHHHHHHhcccCCeEEEE
Q 006905 287 PWNQ--FGGIYLIEVDRVLRPGGYWIL 311 (626)
Q Consensus 287 h~~~--~~~~~L~Ei~RvLKPGG~lvi 311 (626)
.... ....++..+.|+|||||.++-
T Consensus 112 ~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 112 CLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 3332 347899999999999999874
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=98.94 E-value=5.3e-10 Score=111.41 Aligned_cols=126 Identities=15% Similarity=0.140 Sum_probs=91.0
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc-cceeccccccCCCCC-Cccceeeecccccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL-VGTYTNWCEAMSTYP-RTYDLIHADSVFSL 544 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl-i~~~~~~~e~~~~yp-~t~Dlih~~~~f~~ 544 (626)
.+|||+|||+|.++.++++.+. .|+++|.++.+++.+.++ |+ +.+.+. .....+| .+||+|.|+.++.
T Consensus 122 ~~VLDiGcGsG~l~i~aa~~g~---~V~gvDis~~av~~A~~na~~n~~~~~~~~~--d~~~~~~~~~fD~V~ani~~~- 195 (254)
T d2nxca1 122 DKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFLEG--SLEAALPFGPFDLLVANLYAE- 195 (254)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEEES--CHHHHGGGCCEEEEEEECCHH-
T ss_pred CEEEEcccchhHHHHHHHhcCC---EEEEEECChHHHHHHHHHHHHcCCceeEEec--cccccccccccchhhhccccc-
Confidence 4799999999999999999886 689999999999988764 33 112221 0112245 8999999964443
Q ss_pred CCCCCCHHHHHHHhhhhccCCcEEEEEcCh-HHHHHHHHHHHhCCCeeEEeecCCCCCCcceEEEEEe
Q 006905 545 YKDRCETEDILLEMDRILRPEGGVIFRDDV-DELVKVKRIIDALKWQSQIVDHEDGPLEREKLLFAVK 611 (626)
Q Consensus 545 ~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~-~~~~~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K 611 (626)
.+..++.++.|+|||||++|+++-. +....+.+.++...|+..-...+ +.-..|+.+|
T Consensus 196 -----~l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~~~~~~~~----~~Wv~l~~~r 254 (254)
T d2nxca1 196 -----LHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEAAE----GEWVLLAYGR 254 (254)
T ss_dssp -----HHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEE----TTEEEEEEEC
T ss_pred -----cHHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCCCEEEEEEEE----CCEEEEEEeC
Confidence 2467889999999999999998643 44677888888888887644333 1234555554
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=1.6e-09 Score=105.76 Aligned_cols=110 Identities=15% Similarity=0.053 Sum_probs=77.4
Q ss_pred HHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHc-----CCCeEEEEcccc
Q 006905 198 IDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALER-----GVPALIGVLAAE 267 (626)
Q Consensus 198 i~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~er-----g~~~~~~v~d~~ 267 (626)
...+.++|.....++.+|||||||+|..++.|++. .|+++|+.+..+..+..++.+.. .....+..+|..
T Consensus 63 ~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~ 142 (224)
T d1i1na_ 63 HAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGR 142 (224)
T ss_dssp HHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGG
T ss_pred HHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecc
Confidence 34555565333334569999999999998888764 58899988755554443333221 124566777877
Q ss_pred cCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 268 RLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 268 ~Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
..+.+++.||.|++..++.+.+ .++.+.|||||.+++...
T Consensus 143 ~~~~~~~~fD~I~~~~~~~~ip-------~~l~~~LkpGG~LV~pv~ 182 (224)
T d1i1na_ 143 MGYAEEAPYDAIHVGAAAPVVP-------QALIDQLKPGGRLILPVG 182 (224)
T ss_dssp GCCGGGCCEEEEEECSBBSSCC-------HHHHHTEEEEEEEEEEES
T ss_pred cccchhhhhhhhhhhcchhhcC-------HHHHhhcCCCcEEEEEEc
Confidence 7777788999999998885543 357889999999999653
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=7.4e-10 Score=114.15 Aligned_cols=122 Identities=11% Similarity=0.005 Sum_probs=85.4
Q ss_pred CCCCCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHH--H------
Q 006905 187 GTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFAL--E------ 254 (626)
Q Consensus 187 gt~F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~--e------ 254 (626)
...+++-....+..+.+.+.+.++ .+|||||||+|.++..++.. .++++|+++.....+..+... .
T Consensus 129 ~~~~~e~~~~~~~~~~~~~~l~~~--~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g 206 (328)
T d1nw3a_ 129 PEVYGETSFDLVAQMIDEIKMTDD--DLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYG 206 (328)
T ss_dssp TTCCCCCCHHHHHHHHHHSCCCTT--CEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCchhhhHHHHHHHHHHHcCCCCC--CEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhcc
Confidence 344555556666777777766554 49999999999999887763 588999988655443332211 1
Q ss_pred -cCCCeEEEEcccccCCCCCCCe--eEEEeccccccccccHHHHHHHHHhcccCCeEEEEE
Q 006905 255 -RGVPALIGVLAAERLPYPSRAF--DMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 255 -rg~~~~~~v~d~~~Lpf~d~sF--DlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
+..++.+..+|+..+++.+..| |+|+++. +.++ .+....|.|+.|+|||||.++..
T Consensus 207 ~~~~~i~~~~gd~~~~~~~~~~~~advi~~~~-~~f~-~~~~~~l~e~~r~LKpGg~iv~~ 265 (328)
T d1nw3a_ 207 KKHAEYTLERGDFLSEEWRERIANTSVIFVNN-FAFG-PEVDHQLKERFANMKEGGRIVSS 265 (328)
T ss_dssp CCCCCEEEEECCTTSHHHHHHHHHCSEEEECC-TTTC-HHHHHHHHHHHTTCCTTCEEEES
T ss_pred ccCCceEEEECcccccccccccCcceEEEEcc-eecc-hHHHHHHHHHHHhCCCCcEEEEe
Confidence 1235778888988888776655 5666654 4344 34578999999999999999875
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=98.91 E-value=1.5e-09 Score=107.24 Aligned_cols=101 Identities=25% Similarity=0.355 Sum_probs=74.7
Q ss_pred cCCCCCceeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHHH----hccc---ceeccccccCCCCCCccc
Q 006905 464 LGQSGRYRNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIYE----RGLV---GTYTNWCEAMSTYPRTYD 534 (626)
Q Consensus 464 ~~~~~~~r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~~----rgli---~~~~~~~e~~~~yp~t~D 534 (626)
+.. ...++|||+|||.|.++.+|+++ ++ .++.+|.+ .+++.+.+ .|+. ...+ ...|...|..||
T Consensus 76 ~d~-~~~~~VLDvGcG~G~~~~~la~~~p~~---~~~~~D~~-~~~~~a~~~~~~~~~~~rv~~~~--~D~~~~~~~~~D 148 (253)
T d1tw3a2 76 YDW-TNVRHVLDVGGGKGGFAAAIARRAPHV---SATVLEMA-GTVDTARSYLKDEGLSDRVDVVE--GDFFEPLPRKAD 148 (253)
T ss_dssp SCC-TTCSEEEEETCTTSHHHHHHHHHCTTC---EEEEEECT-THHHHHHHHHHHTTCTTTEEEEE--CCTTSCCSSCEE
T ss_pred cCC-ccCCEEEEeCCCCCHHHHHHHHhccee---EEEEccCH-HHHHHHHHHHHHhhcccchhhcc--ccchhhcccchh
Confidence 444 66899999999999999999876 34 34556664 56665554 4552 2222 123455678999
Q ss_pred eeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 535 LIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 535 lih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
+|.+..++.++.+. +...+|.++.|+|||||.++|.|
T Consensus 149 ~v~~~~vlh~~~d~-~~~~~L~~~~~~LkPGG~l~i~e 185 (253)
T d1tw3a2 149 AIILSFVLLNWPDH-DAVRILTRCAEALEPGGRILIHE 185 (253)
T ss_dssp EEEEESCGGGSCHH-HHHHHHHHHHHTEEEEEEEEEEE
T ss_pred heeeccccccCCch-hhHHHHHHHHHhcCCCcEEEEEe
Confidence 99999999988653 44578999999999999999975
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=1.2e-09 Score=109.08 Aligned_cols=108 Identities=16% Similarity=0.226 Sum_probs=77.1
Q ss_pred hhhcCCCCCceeEEeccCchhhHhhhhhCC-----CeEEEEeccCccCcccHHHHHHhc-----ccceecccc-cc----
Q 006905 461 NNQLGQSGRYRNILDMNAHLGGFAAALIDF-----PVWVMNVVPAEAKINTLGVIYERG-----LVGTYTNWC-EA---- 525 (626)
Q Consensus 461 ~~~~~~~~~~r~vlD~g~g~G~faa~l~~~-----~v~~mnv~~~~~~~~~l~~~~~rg-----li~~~~~~~-e~---- 525 (626)
+..+.....--+|||+|||+|.++..|++. +-....++.+|.++.|++.+.++- +-.+.-+|. ..
T Consensus 32 l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (280)
T d1jqea_ 32 IGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEY 111 (280)
T ss_dssp TTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHH
T ss_pred HHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhh
Confidence 333443123336999999999998887643 123457899999999999988762 111111221 11
Q ss_pred ----CCCCC-CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 526 ----MSTYP-RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 526 ----~~~yp-~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
....+ .+||+|+|.++|.+.. +++.+|.+|.|+|+|||+++|.
T Consensus 112 ~~~~~~~~~~~~fD~I~~~~~l~~~~---d~~~~l~~l~~~LkpgG~l~i~ 159 (280)
T d1jqea_ 112 QSRMLEKKELQKWDFIHMIQMLYYVK---DIPATLKFFHSLLGTNAKMLII 159 (280)
T ss_dssp HHHHTTSSSCCCEEEEEEESCGGGCS---CHHHHHHHHHHTEEEEEEEEEE
T ss_pred cchhcccCCCCceeEEEEccceecCC---CHHHHHHHHHhhCCCCCEEEEE
Confidence 12344 9999999999999887 5689999999999999999886
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=5.4e-10 Score=109.01 Aligned_cols=101 Identities=15% Similarity=0.127 Sum_probs=76.1
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc------cceeccccccCCCCC-Cccceeeecccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL------VGTYTNWCEAMSTYP-RTYDLIHADSVF 542 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl------i~~~~~~~e~~~~yp-~t~Dlih~~~~f 542 (626)
-.+|||+|||+|.++.+|++.+. -+|+.+|.++.+++.+.++.- ....+++......+| .+||+|-.+.+.
T Consensus 54 g~~VLdIGcG~G~~a~~~a~~~~--~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~ 131 (229)
T d1zx0a1 54 GGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP 131 (229)
T ss_dssp CEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred CCeEEEeeccchHHHHHHHHcCC--CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeecccc
Confidence 35799999999999999998754 389999999999999988763 112345555556677 889888754443
Q ss_pred cc--CCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 543 SL--YKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 543 ~~--~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
+. ..+.-+.+.++.|+.|+|||||.|++.+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 132 LSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp CBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred cccccccccCHHHHHHHHHHHcCCCcEEEEEe
Confidence 32 2233355779999999999999999853
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=1.8e-09 Score=105.01 Aligned_cols=122 Identities=9% Similarity=0.004 Sum_probs=89.2
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccc--------------------eeccccccCC--
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVG--------------------TYTNWCEAMS-- 527 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~--------------------~~~~~~e~~~-- 527 (626)
-..|||+|||.|..+.+|+++|. +|+++|.|+.+++.+.++.-.. .+.-.|.++.
T Consensus 46 ~~rvLd~GCG~G~~a~~LA~~G~---~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l 122 (229)
T d2bzga1 46 GLRVFFPLCGKAVEMKWFADRGH---SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDL 122 (229)
T ss_dssp SCEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGG
T ss_pred CCEEEEeCCCCcHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhc
Confidence 34799999999999999999997 8999999999998887763210 0011122222
Q ss_pred --CCCCccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh------------HHHHHHHHHHHhCCCeeEE
Q 006905 528 --TYPRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV------------DELVKVKRIIDALKWQSQI 593 (626)
Q Consensus 528 --~yp~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~------------~~~~~~~~~~~~l~w~~~~ 593 (626)
....+||+|....+|.+... -+.+.++.+|.|+|||||++++.... -....+++++.. .|++..
T Consensus 123 ~~~~~~~fd~i~~~~~l~~~~~-~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el~~lf~~-~~~i~~ 200 (229)
T d2bzga1 123 PRTNIGKFDMIWDRGALVAINP-GDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGK-ICNIRC 200 (229)
T ss_dssp GGSCCCCEEEEEESSSTTTSCG-GGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHHHHHHTT-TEEEEE
T ss_pred cccccCceeEEEEEEEEEeccc-hhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHHHHHhcC-CCEEEE
Confidence 23489999999999998764 36689999999999999998775211 024567888766 477665
Q ss_pred eec
Q 006905 594 VDH 596 (626)
Q Consensus 594 ~~~ 596 (626)
.++
T Consensus 201 le~ 203 (229)
T d2bzga1 201 LEK 203 (229)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=98.86 E-value=4.5e-09 Score=104.25 Aligned_cols=104 Identities=10% Similarity=0.067 Sum_probs=71.2
Q ss_pred HHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcC-CCeEEEEcccccCCCCCCC
Q 006905 202 GKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERG-VPALIGVLAAERLPYPSRA 275 (626)
Q Consensus 202 ~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg-~~~~~~v~d~~~Lpf~d~s 275 (626)
...+.+.+ +.+|||+|||+|.++..|++. .|+++|+++..+..+..++....+ ..+.+...|.... +++++
T Consensus 78 i~~l~i~p--G~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~~~ 154 (250)
T d1yb2a1 78 IMRCGLRP--GMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQM 154 (250)
T ss_dssp ---CCCCT--TCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCC
T ss_pred HHHcCCCC--cCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-cccce
Confidence 33343444 559999999999999998864 588888876444433333322222 2456666666554 56789
Q ss_pred eeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 276 FDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 276 FDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
||+|++.. + ++..++.++.++|||||+|++..|
T Consensus 155 fD~V~ld~-----p-~p~~~l~~~~~~LKpGG~lv~~~P 187 (250)
T d1yb2a1 155 YDAVIADI-----P-DPWNHVQKIASMMKPGSVATFYLP 187 (250)
T ss_dssp EEEEEECC-----S-CGGGSHHHHHHTEEEEEEEEEEES
T ss_pred eeeeeecC-----C-chHHHHHHHHHhcCCCceEEEEeC
Confidence 99998742 2 345789999999999999999766
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.84 E-value=4.2e-09 Score=103.05 Aligned_cols=100 Identities=17% Similarity=0.145 Sum_probs=71.2
Q ss_pred CCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEccc---ccCCCCCCCeeEEE
Q 006905 209 DGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAA---ERLPYPSRAFDMAH 280 (626)
Q Consensus 209 ~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~---~~Lpf~d~sFDlV~ 280 (626)
..++.+|||+|||+|.++.+|++. .|+++|+++.++..+ .+.+..++ .......+. ...+.....+|+|+
T Consensus 71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a-~~~a~~~~-~~~~i~~d~~~~~~~~~~~~~vD~i~ 148 (227)
T d1g8aa_ 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLREL-VPIVEERR-NIVPILGDATKPEEYRALVPKVDVIF 148 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHH-HHHHSSCT-TEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHH-HHHHHhcC-CceEEEEECCCcccccccccceEEEE
Confidence 344669999999999999999975 589999988666543 33343333 234444443 23344556899998
Q ss_pred eccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 281 CSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 281 ~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+.. +.+++...++.++.++|||||+++++.
T Consensus 149 ~d~---~~~~~~~~~l~~~~~~LkpgG~lvi~~ 178 (227)
T d1g8aa_ 149 EDV---AQPTQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp ECC---CSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEc---cccchHHHHHHHHHHhcccCCeEEEEE
Confidence 754 233445789999999999999999974
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=1.5e-09 Score=107.98 Aligned_cols=123 Identities=10% Similarity=0.102 Sum_probs=85.9
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc--ccee--------------------------
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL--VGTY-------------------------- 519 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl--i~~~-------------------------- 519 (626)
..-++|||+|||.|.+...++.+. ..+|+.+|.+++|++.+.++-- .+.+
T Consensus 53 ~~g~~vLDiGcG~g~~~~~~~~~~--~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T d2g72a1 53 VSGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 130 (263)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CCCcEEEEeccCCCHHHHHHhccc--CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence 345689999999998887766663 3489999999999998864310 0110
Q ss_pred ---------cccc--ccCCC---CCCccceeeeccccccCC-CCCCHHHHHHHhhhhccCCcEEEEEcChH---------
Q 006905 520 ---------TNWC--EAMST---YPRTYDLIHADSVFSLYK-DRCETEDILLEMDRILRPEGGVIFRDDVD--------- 575 (626)
Q Consensus 520 ---------~~~~--e~~~~---yp~t~Dlih~~~~f~~~~-~~c~~~~~l~E~dRiLRPgG~~i~~d~~~--------- 575 (626)
.|.. ..+.. .+..||+|.+..++++.. ++.++..+|.++.|+|||||++|+++...
T Consensus 131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~ 210 (263)
T d2g72a1 131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEA 210 (263)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTE
T ss_pred hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCc
Confidence 0111 11111 236899999988887653 44567889999999999999999975311
Q ss_pred -------HHHHHHHHHHhCCCeeE
Q 006905 576 -------ELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 576 -------~~~~~~~~~~~l~w~~~ 592 (626)
..+.|++++..--.+++
T Consensus 211 ~~~~~~~t~e~v~~~l~~aGf~v~ 234 (263)
T d2g72a1 211 RLTVVPVSEEEVREALVRSGYKVR 234 (263)
T ss_dssp EEECCCCCHHHHHHHHHHTTEEEE
T ss_pred ccccCCCCHHHHHHHHHHCCCeEE
Confidence 25778888877766654
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=98.82 E-value=6.9e-09 Score=103.81 Aligned_cols=105 Identities=17% Similarity=0.160 Sum_probs=73.9
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC-C-eEEEEcccccCCCC
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGV-P-ALIGVLAAERLPYP 272 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~-~-~~~~v~d~~~Lpf~ 272 (626)
.|...+.+.+ +.+|||+|||+|.++..|++. .++++|+++..+..+..+ ....+. . ..+...|. ...++
T Consensus 94 ~Ii~~l~i~p--G~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~-~~~~g~~~~v~~~~~d~-~~~~~ 169 (266)
T d1o54a_ 94 FIAMMLDVKE--GDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESN-LTKWGLIERVTIKVRDI-SEGFD 169 (266)
T ss_dssp HHHHHTTCCT--TCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHH-HHHTTCGGGEEEECCCG-GGCCS
T ss_pred HHHHhhCCCC--CCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH-HHHhccccCcEEEeccc-ccccc
Confidence 4566665665 459999999999999999864 588999988655544433 334454 2 33333332 33466
Q ss_pred CCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 273 SRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 273 d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
...||.|+. +.+ ++..++.++.++|||||.|++..|
T Consensus 170 ~~~~D~V~~-----d~p-~p~~~l~~~~~~LKpGG~lv~~~P 205 (266)
T d1o54a_ 170 EKDVDALFL-----DVP-DPWNYIDKCWEALKGGGRFATVCP 205 (266)
T ss_dssp CCSEEEEEE-----CCS-CGGGTHHHHHHHEEEEEEEEEEES
T ss_pred ccceeeeEe-----cCC-CHHHHHHHHHhhcCCCCEEEEEeC
Confidence 778999875 333 357899999999999999999765
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.77 E-value=7.1e-09 Score=101.19 Aligned_cols=104 Identities=13% Similarity=0.084 Sum_probs=71.3
Q ss_pred HHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCe
Q 006905 199 DDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAF 276 (626)
Q Consensus 199 ~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sF 276 (626)
..+.+.+.+.++ .+|||||||+|.+++.|++. .|+++|+++.....+... .....++.+..+|........+.|
T Consensus 60 a~ml~~L~l~~g--~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~--~~~~~nv~~~~~d~~~g~~~~~pf 135 (224)
T d1vbfa_ 60 IFMLDELDLHKG--QKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKL--LSYYNNIKLILGDGTLGYEEEKPY 135 (224)
T ss_dssp HHHHHHTTCCTT--CEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHH--HTTCSSEEEEESCGGGCCGGGCCE
T ss_pred HHHHHHhhhccc--ceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHH--HhcccccccccCchhhcchhhhhH
Confidence 345566666654 49999999999999988886 678888766433332221 122345667777754433346789
Q ss_pred eEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 277 DMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 277 DlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
|.|++..++.+.+ ..+.+.|||||.+++..
T Consensus 136 D~Iiv~~a~~~ip-------~~l~~qLk~GGrLV~pv 165 (224)
T d1vbfa_ 136 DRVVVWATAPTLL-------CKPYEQLKEGGIMILPI 165 (224)
T ss_dssp EEEEESSBBSSCC-------HHHHHTEEEEEEEEEEE
T ss_pred HHHHhhcchhhhh-------HHHHHhcCCCCEEEEEE
Confidence 9999988875543 24567899999999863
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=98.77 E-value=2e-09 Score=106.88 Aligned_cols=99 Identities=22% Similarity=0.275 Sum_probs=74.2
Q ss_pred CCceeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHH----Hhcccc---eeccccccCCCCCCccceeee
Q 006905 468 GRYRNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIY----ERGLVG---TYTNWCEAMSTYPRTYDLIHA 538 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~----~rgli~---~~~~~~e~~~~yp~t~Dlih~ 538 (626)
...++|||+|||.|.++.+|+++ ++ +++.+|.+ .+++.+. +.|+.. .... ..|...|..||+|.+
T Consensus 80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~---~~~~~Dlp-~~~~~a~~~~~~~~~~~ri~~~~~--d~~~~~p~~~D~v~~ 153 (256)
T d1qzza2 80 SAVRHVLDVGGGNGGMLAAIALRAPHL---RGTLVELA-GPAERARRRFADAGLADRVTVAEG--DFFKPLPVTADVVLL 153 (256)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTC---EEEEEECH-HHHHHHHHHHHHTTCTTTEEEEEC--CTTSCCSCCEEEEEE
T ss_pred ccCCEEEEECCCCCHHHHHHHHhhcCc---EEEEecCh-HHHHHHHHHHhhcCCcceeeeeee--eccccccccchhhhc
Confidence 56889999999999999999876 33 56666764 6666544 445522 2221 234556788999999
Q ss_pred ccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 539 DSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 539 ~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
..+|.++.+. +...+|.++.|+|||||.++|.|.
T Consensus 154 ~~vLh~~~d~-~~~~lL~~i~~~LkpgG~llI~d~ 187 (256)
T d1qzza2 154 SFVLLNWSDE-DALTILRGCVRALEPGGRLLVLDR 187 (256)
T ss_dssp ESCGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cccccccCcH-HHHHHHHHHHhhcCCcceeEEEEe
Confidence 9999988642 345789999999999999999875
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.71 E-value=4.1e-08 Score=98.42 Aligned_cols=102 Identities=19% Similarity=0.119 Sum_probs=72.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEcccccCCCCCCCeeEEEecccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAERLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~~Lpf~d~sFDlV~~~~~l 285 (626)
...+|||+|||+|..+..++.. .++++|+++..+.-+. +.+...++. +.+...|... ++++++||+|+|+...
T Consensus 108 ~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~-~Na~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPY 185 (274)
T d2b3ta1 108 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQ-RNAQHLAIKNIHILQSDWFS-ALAGQQFAMIVSNPPY 185 (274)
T ss_dssp SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHH-HHHHHHTCCSEEEECCSTTG-GGTTCCEEEEEECCCC
T ss_pred cccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHH-HHHHHhCcccceeeeccccc-ccCCCceeEEEecchh
Confidence 3457999999999999888774 7889999886555444 344555664 6677666432 3456799999998765
Q ss_pred ccccc------------------------cHHHHHHHHHhcccCCeEEEEEeC
Q 006905 286 IPWNQ------------------------FGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 286 ~h~~~------------------------~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
++-.+ ....++.++.+.|+|||.+++...
T Consensus 186 i~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig 238 (274)
T d2b3ta1 186 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG 238 (274)
T ss_dssp BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred hhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 43211 013578899999999999999754
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=98.70 E-value=1.3e-08 Score=97.87 Aligned_cols=117 Identities=9% Similarity=0.094 Sum_probs=82.5
Q ss_pred eeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHH----Hhcc--cceeccccccC-CCCC-Cccceeeecc
Q 006905 471 RNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIY----ERGL--VGTYTNWCEAM-STYP-RTYDLIHADS 540 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~----~rgl--i~~~~~~~e~~-~~yp-~t~Dlih~~~ 540 (626)
..|||+|||.|.+...|++. +. |++++|.+.+++..+. ++|+ +-+++.=...+ ..+| .++|.|+...
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~p~~---~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~f 107 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQNPDI---NYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF 107 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred ceEEEEEecCcHHHHHHHHhCCCC---cEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccc
Confidence 35999999999999999875 34 8999999988887654 4455 33333211112 2255 9999998865
Q ss_pred ccccCCC-----CCCHHHHHHHhhhhccCCcEEEE-EcChHHHHHHHHHHHhCCCe
Q 006905 541 VFSLYKD-----RCETEDILLEMDRILRPEGGVIF-RDDVDELVKVKRIIDALKWQ 590 (626)
Q Consensus 541 ~f~~~~~-----~c~~~~~l~E~dRiLRPgG~~i~-~d~~~~~~~~~~~~~~l~w~ 590 (626)
.....+. |=--+.+|.++.|+|||||.++| ||..+..+.+.+.+......
T Consensus 108 p~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~~~~~~ 163 (204)
T d2fcaa1 108 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLL 163 (204)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCE
T ss_pred ccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHHHCCCc
Confidence 5554332 21125799999999999999977 68888777777776655443
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.69 E-value=2.4e-08 Score=95.95 Aligned_cols=119 Identities=13% Similarity=0.127 Sum_probs=85.3
Q ss_pred eeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHHH----hcc--cceeccccccCC-CCC-Cccceeeecc
Q 006905 471 RNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIYE----RGL--VGTYTNWCEAMS-TYP-RTYDLIHADS 540 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~~----rgl--i~~~~~~~e~~~-~yp-~t~Dlih~~~ 540 (626)
..|||+|||.|.+...|++. .. |++++|.+++++..+.+ .|+ |.+++.-.+.+. .+| .++|.||+..
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~~---~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~f 109 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPDI---NYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF 109 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CeEEEEeccCCHHHHHHHHHCCCC---ceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccc
Confidence 46999999999999999875 44 89999999888877654 444 444553223333 356 9999999733
Q ss_pred ccc-----cCCCCCCHHHHHHHhhhhccCCcEEEE-EcChHHHHHHHHHHHhCCCeeE
Q 006905 541 VFS-----LYKDRCETEDILLEMDRILRPEGGVIF-RDDVDELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 541 ~f~-----~~~~~c~~~~~l~E~dRiLRPgG~~i~-~d~~~~~~~~~~~~~~l~w~~~ 592 (626)
.-. |.+.|=--+.+|.++.|+|+|||.++| ||..+..+.+.+......|...
T Consensus 110 PdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~~~le~~~~~~~~~~ 167 (204)
T d1yzha1 110 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLN 167 (204)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEE
T ss_pred cccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHHHHHHHHHHHCCcccc
Confidence 322 222232236799999999999999987 7888877777777777777654
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.69 E-value=2.2e-08 Score=94.15 Aligned_cols=117 Identities=16% Similarity=0.182 Sum_probs=86.1
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc---cceeccccccCCCCCCccceeeecc
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL---VGTYTNWCEAMSTYPRTYDLIHADS 540 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~~~~e~~~~yp~t~Dlih~~~ 540 (626)
..-..|||+|||+|.++.+|+...- .|+.+|.++++++.+.++ |+ +-+++...+....-...||+|.+++
T Consensus 32 ~~g~~VLDiGcGsG~~s~~lA~~~~---~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~ 108 (186)
T d1l3ia_ 32 GKNDVAVDVGCGTGGVTLELAGRVR---RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGG 108 (186)
T ss_dssp CTTCEEEEESCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESC
T ss_pred CCCCEEEEEECCeEcccccccccce---EEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeC
Confidence 3455799999999999999998754 688999999999988775 33 3344432222221128999998854
Q ss_pred ccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC-hHHHHHHHHHHHhCCCeeEE
Q 006905 541 VFSLYKDRCETEDILLEMDRILRPEGGVIFRDD-VDELVKVKRIIDALKWQSQI 593 (626)
Q Consensus 541 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~-~~~~~~~~~~~~~l~w~~~~ 593 (626)
.- -.+++++.++.+.|||||++++... .+....+.+.+....|+..+
T Consensus 109 ~~------~~~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~~~~~~~ 156 (186)
T d1l3ia_ 109 SG------GELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVNI 156 (186)
T ss_dssp CT------TCHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCEE
T ss_pred cc------ccchHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHcCCCeEE
Confidence 22 3568899999999999999999864 45667777888887776543
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=4.1e-08 Score=100.77 Aligned_cols=107 Identities=16% Similarity=0.140 Sum_probs=71.5
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHc-----------CCCeEEEE
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALER-----------GVPALIGV 263 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~er-----------g~~~~~~v 263 (626)
.|..++.+.++ .+|||+|||+|.++..|+.. .|+++|+++..+..+..++.... ...+.+..
T Consensus 89 ~Il~~l~i~pG--~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~ 166 (324)
T d2b25a1 89 MILSMMDINPG--DTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 166 (324)
T ss_dssp HHHHHHTCCTT--CEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHHhCCCCC--CEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEe
Confidence 45556656654 49999999999999999875 48889887755554444333211 12355666
Q ss_pred cccccCC--CCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 264 LAAERLP--YPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 264 ~d~~~Lp--f~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.|..... +++.+||.|+.- .++ +..++.++.++|||||.|++-.|
T Consensus 167 ~di~~~~~~~~~~~fD~V~LD-----~p~-P~~~l~~~~~~LKpGG~lv~~~P 213 (324)
T d2b25a1 167 KDISGATEDIKSLTFDAVALD-----MLN-PHVTLPVFYPHLKHGGVCAVYVV 213 (324)
T ss_dssp SCTTCCC-------EEEEEEC-----SSS-TTTTHHHHGGGEEEEEEEEEEES
T ss_pred cchhhcccccCCCCcceEeec-----CcC-HHHHHHHHHHhccCCCEEEEEeC
Confidence 6655543 457789999863 222 35689999999999999998765
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=1.2e-08 Score=103.82 Aligned_cols=99 Identities=13% Similarity=0.069 Sum_probs=73.2
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccH---HHHHHhcc---cceeccccccCCCCCCccceeeeccccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTL---GVIYERGL---VGTYTNWCEAMSTYPRTYDLIHADSVFS 543 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l---~~~~~rgl---i~~~~~~~e~~~~yp~t~Dlih~~~~f~ 543 (626)
-.+|||+|||+|.++..+++.+.- .|+.+|.++.+. ..+.+.|+ |.+.+.-.+.+..-+..||+|.+..+++
T Consensus 36 ~~~VLDiGcG~G~lsl~aa~~Ga~--~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~ 113 (311)
T d2fyta1 36 DKVVLDVGCGTGILSMFAAKAGAK--KVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGY 113 (311)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCS--EEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBT
T ss_pred cCEEEEECCCCCHHHHHHHHcCCC--EEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeeee
Confidence 457999999999999999988752 577888886654 34455665 3444433333332238999999988877
Q ss_pred cCCCCCCHHHHHHHhhhhccCCcEEEE
Q 006905 544 LYKDRCETEDILLEMDRILRPEGGVIF 570 (626)
Q Consensus 544 ~~~~~c~~~~~l~E~dRiLRPgG~~i~ 570 (626)
.....-.++.++..++|+|||||.+|-
T Consensus 114 ~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 114 FLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp TBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred ecccccccHHHHHHHHhcCCCCcEEec
Confidence 766655678899999999999999985
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.63 E-value=1.2e-08 Score=98.30 Aligned_cols=137 Identities=11% Similarity=0.125 Sum_probs=85.6
Q ss_pred ceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHh----cccceeccccccCCCCCCccceeeecccccc
Q 006905 470 YRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYER----GLVGTYTNWCEAMSTYPRTYDLIHADSVFSL 544 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~r----gli~~~~~~~e~~~~yp~t~Dlih~~~~f~~ 544 (626)
--+|||+|||.|+++.+|++. +- ..|.++|.++.|++.+.++ +.+.....-++....|+..+|.+.+ +|..
T Consensus 57 g~~VLDlGcG~G~~~~~la~~v~~--g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~--v~~~ 132 (209)
T d1nt2a_ 57 DERVLYLGAASGTTVSHLADIVDE--GIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDL--IYQD 132 (209)
T ss_dssp SCEEEEETCTTSHHHHHHHHHTTT--SEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEE--EEEC
T ss_pred CCEEEEeCCcCCHHHHHHHHhccC--CeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEE--EEec
Confidence 347999999999999998864 10 1489999999999877554 3344444333444456655554433 3333
Q ss_pred CCCCCCHHHHHHHhhhhccCCcEEEEEcC----------hHHHHHHHHHHHhCCCeeE-EeecCCCCCCcceEEEEEecc
Q 006905 545 YKDRCETEDILLEMDRILRPEGGVIFRDD----------VDELVKVKRIIDALKWQSQ-IVDHEDGPLEREKLLFAVKLY 613 (626)
Q Consensus 545 ~~~~c~~~~~l~E~dRiLRPgG~~i~~d~----------~~~~~~~~~~~~~l~w~~~-~~~~e~~~~~~e~~l~~~K~~ 613 (626)
.....+...+|.|+.|+|||||++++.+. .++...+.+.+.. .++.. ..+.+ |+.++-++|.-+.|
T Consensus 133 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l~~-gf~i~E~i~L~--P~~~~H~~v~~~r~ 209 (209)
T d1nt2a_ 133 IAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEG-DFKIVKHGSLM--PYHRDHIFIHAYRF 209 (209)
T ss_dssp CCSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHT-TSEEEEEEECT--TTCTTEEEEEEEEC
T ss_pred ccChhhHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHHHHHHc-CCEEEEEEccC--CCccCcEEEEEEeC
Confidence 33333567899999999999999999742 1233333333221 23332 23333 66677888876654
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.62 E-value=2.4e-08 Score=105.30 Aligned_cols=123 Identities=11% Similarity=0.047 Sum_probs=80.4
Q ss_pred CCCCCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHH------cC
Q 006905 187 GTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALE------RG 256 (626)
Q Consensus 187 gt~F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~e------rg 256 (626)
++.+++-...++.++.+.+.+.++. ++||||||+|.++..++.. .++++|+++.++..+..+.... .+
T Consensus 194 ~~vYGEl~~~~i~~Il~~l~Lkpgd--~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g 271 (406)
T d1u2za_ 194 NYVYGELLPNFLSDVYQQCQLKKGD--TFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYG 271 (406)
T ss_dssp GGCCCCBCHHHHHHHHHHTTCCTTC--EEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCccccCCHHHHHHHHHHhCCCCCC--EEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhc
Confidence 4556777777888888887766644 9999999999999888765 4789999886555444333221 11
Q ss_pred C---CeEEE-EcccccCCCC---CCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 257 V---PALIG-VLAAERLPYP---SRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 257 ~---~~~~~-v~d~~~Lpf~---d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
. ...+. ..+....++. -..+|+|+++. + ++..+....|.++.|+|||||.++...
T Consensus 272 ~~~~~~~~~~~~~f~~~~~~d~~~~~adVV~inn-~-~f~~~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 272 MRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNN-F-LFDEDLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp BCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECC-T-TCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred cccccceeeeeechhhccccccccccceEEEEec-c-cCchHHHHHHHHHHHhcCCCcEEEEec
Confidence 1 22221 2222222211 12468888765 3 234446889999999999999998753
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.61 E-value=7.3e-08 Score=93.27 Aligned_cols=107 Identities=16% Similarity=0.153 Sum_probs=75.7
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCCCC
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLPYP 272 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lpf~ 272 (626)
....+.+.+.+.++. +|||||||+|..++.|+.. .|++++..+. +.+.+.+...+.+. ++.+..+|.......
T Consensus 66 ~~a~ml~~L~l~~g~--~VLeIGsGsGY~taila~l~g~~V~~ie~~~~-l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~ 142 (215)
T d1jg1a_ 66 MVAIMLEIANLKPGM--NILEVGTGSGWNAALISEIVKTDVYTIERIPE-LVEFAKRNLERAGVKNVHVILGDGSKGFPP 142 (215)
T ss_dssp HHHHHHHHHTCCTTC--CEEEECCTTSHHHHHHHHHHCSCEEEEESCHH-HHHHHHHHHHHTTCCSEEEEESCGGGCCGG
T ss_pred hHHHHHHhhccCccc--eEEEecCCCChhHHHHHHhhCceeEEEeccHH-HHHHHHHHHHHcCCceeEEEECccccCCcc
Confidence 445666677666644 8999999999999888764 5889999773 33334444445554 466777776555455
Q ss_pred CCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 273 SRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 273 d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
.+.||.|++..++.+.+. .+...|+|||.+++..
T Consensus 143 ~~pfD~Iiv~~a~~~ip~-------~l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 143 KAPYDVIIVTAGAPKIPE-------PLIEQLKIGGKLIIPV 176 (215)
T ss_dssp GCCEEEEEECSBBSSCCH-------HHHHTEEEEEEEEEEE
T ss_pred cCcceeEEeecccccCCH-------HHHHhcCCCCEEEEEE
Confidence 788999999888754332 2556799999999864
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.59 E-value=2.2e-08 Score=97.94 Aligned_cols=133 Identities=14% Similarity=0.104 Sum_probs=87.0
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cccc-eeccccccCCCCC-Cccceeeeccccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GLVG-TYTNWCEAMSTYP-RTYDLIHADSVFS 543 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gli~-~~~~~~e~~~~yp-~t~Dlih~~~~f~ 543 (626)
--+|||+|||+|.++..|++.. ---.|.++|.++.|++.+.++ +.+- +..+. .....|+ .++|++.+...+.
T Consensus 75 G~~VLDlGcGsG~~~~~la~~~-~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~-~~~~~~~~~~~~v~~i~~~~~ 152 (230)
T d1g8sa_ 75 DSKILYLGASAGTTPSHVADIA-DKGIVYAIEYAPRIMRELLDACAERENIIPILGDA-NKPQEYANIVEKVDVIYEDVA 152 (230)
T ss_dssp TCEEEEESCCSSHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCT-TCGGGGTTTCCCEEEEEECCC
T ss_pred CCEEEEeCEEcCHHHHHHHHhC-CCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEee-ccCcccccccceeEEeecccc
Confidence 5579999999999999998751 112689999999999888775 3233 33343 3333444 6777665544444
Q ss_pred cCCCCCCHHHHHHHhhhhccCCcEEEEEcC----------hHHHHHHHHHHHhCCCeeE-EeecCCCCCCcceEEEE
Q 006905 544 LYKDRCETEDILLEMDRILRPEGGVIFRDD----------VDELVKVKRIIDALKWQSQ-IVDHEDGPLEREKLLFA 609 (626)
Q Consensus 544 ~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~----------~~~~~~~~~~~~~l~w~~~-~~~~e~~~~~~e~~l~~ 609 (626)
+. .+.+.++.|+.|+|||||.+++.+. .....++.+.++.-..+.. .++. .|+.++-+||.
T Consensus 153 ~~---~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~idL--~py~~~H~~vv 224 (230)
T d1g8sa_ 153 QP---NQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEVDI--EPFEKDHVMFV 224 (230)
T ss_dssp ST---THHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEEEEC--TTTSTTEEEEE
T ss_pred ch---HHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEEecC--CCCcCCeEEEE
Confidence 33 3567899999999999999999732 1345556666665555543 2233 35556665553
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.55 E-value=8.9e-08 Score=93.14 Aligned_cols=108 Identities=13% Similarity=0.072 Sum_probs=71.7
Q ss_pred HHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----------CcEEEeCCccchHHHHHHHHH----H-cCCCeEEEE
Q 006905 199 DDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----------NIITMSFAPRDTHEAQVQFAL----E-RGVPALIGV 263 (626)
Q Consensus 199 ~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----------~V~avdis~~dls~a~i~~A~----e-rg~~~~~~v 263 (626)
..+.+.|...-.++.+|||||||+|.+++.|++. .|+++|..+.....+..+... . ...++.+..
T Consensus 68 a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~ 147 (223)
T d1r18a_ 68 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE 147 (223)
T ss_dssp HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEe
Confidence 3455555222223559999999999999888764 378888876444333322211 0 112466777
Q ss_pred cccccCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 264 LAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 264 ~d~~~Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+|......+.+.||.|++..++.+.+ ..+.+.|||||.+++..
T Consensus 148 ~d~~~~~~~~~~fD~Iiv~~a~~~~p-------~~l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 148 GDGRKGYPPNAPYNAIHVGAAAPDTP-------TELINQLASGGRLIVPV 190 (223)
T ss_dssp SCGGGCCGGGCSEEEEEECSCBSSCC-------HHHHHTEEEEEEEEEEE
T ss_pred cccccccccccceeeEEEEeechhch-------HHHHHhcCCCcEEEEEE
Confidence 78666655677899999988875433 24678999999999864
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.53 E-value=1.4e-07 Score=91.85 Aligned_cols=130 Identities=15% Similarity=0.159 Sum_probs=82.9
Q ss_pred ceeEEeccCchhhHhhhhhCC----CeEEEEeccCccCcccHHHHHHhc----ccc-eeccccccCCCCC---Cccceee
Q 006905 470 YRNILDMNAHLGGFAAALIDF----PVWVMNVVPAEAKINTLGVIYERG----LVG-TYTNWCEAMSTYP---RTYDLIH 537 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~----~v~~mnv~~~~~~~~~l~~~~~rg----li~-~~~~~~e~~~~yp---~t~Dlih 537 (626)
--+|||+|||.|+++.+|++. + .|.++|.++.++..+.++- .+- +..+ ......|+ ..+|+|+
T Consensus 74 G~~VLDlGaGsG~~t~~la~~VG~~G----~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d-~~~~~~~~~~~~~vD~i~ 148 (227)
T d1g8aa_ 74 GKSVLYLGIASGTTASHVSDIVGWEG----KIFGIEFSPRVLRELVPIVEERRNIVPILGD-ATKPEEYRALVPKVDVIF 148 (227)
T ss_dssp TCEEEEETTTSTTHHHHHHHHHCTTS----EEEEEESCHHHHHHHHHHHSSCTTEEEEECC-TTCGGGGTTTCCCEEEEE
T ss_pred CCEEEEeccCCCHHHHHHHHHhCCCC----EEEEEeCcHHHHHHHHHHHHhcCCceEEEEE-CCCcccccccccceEEEE
Confidence 557999999999999999864 4 4788999999988776653 222 2222 12222333 6778877
Q ss_pred eccccccCCCCCCHHHHHHHhhhhccCCcEEEEEc----------ChHHHHHHHHHHHhCCCeeE-EeecCCCCCCcc-e
Q 006905 538 ADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRD----------DVDELVKVKRIIDALKWQSQ-IVDHEDGPLERE-K 605 (626)
Q Consensus 538 ~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d----------~~~~~~~~~~~~~~l~w~~~-~~~~e~~~~~~e-~ 605 (626)
++ +.+. -....++.++.|+|||||+++|.. ..++...++++.+. .++.. ..+.+ |+.++ .
T Consensus 149 ~d--~~~~---~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~-gf~iie~i~L~--p~~~~H~ 220 (227)
T d1g8aa_ 149 ED--VAQP---TQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSE-YFEVIERLNLE--PYEKDHA 220 (227)
T ss_dssp EC--CCST---THHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHT-TSEEEEEEECT--TTSSSEE
T ss_pred EE--cccc---chHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHc-CCEEEEEEcCC--CCCCceE
Confidence 63 2221 134679999999999999999962 12445556666543 55543 33333 33333 5
Q ss_pred EEEEEec
Q 006905 606 LLFAVKL 612 (626)
Q Consensus 606 ~l~~~K~ 612 (626)
+.|++|+
T Consensus 221 ~vv~rK~ 227 (227)
T d1g8aa_ 221 LFVVRKT 227 (227)
T ss_dssp EEEEECC
T ss_pred EEEEEeC
Confidence 6677774
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.49 E-value=2.1e-07 Score=86.52 Aligned_cols=131 Identities=15% Similarity=0.151 Sum_probs=77.3
Q ss_pred cCCceecCCCCCCCCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHH
Q 006905 177 EGDRFRFPGGGTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALE 254 (626)
Q Consensus 177 ~ge~~~Fp~ggt~F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~e 254 (626)
.|..+.+|.+ + ....+...+.|..++...-..+.+|||+|||+|.++..++.+ .++++|.++..+..+ .+.++.
T Consensus 10 kg~~l~~~~~-~--Rpt~~~v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~-~~N~~~ 85 (171)
T d1ws6a1 10 RGVALKVPAS-A--RPSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLL-KENVRR 85 (171)
T ss_dssp TTCEECCCTT-C--CCCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHH-HHHHHH
T ss_pred cCCEeCCCCC-C--CCCcHHHHHHHHHHhhccccCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhh-hHHHHh
Confidence 3455555543 1 222333344555555432233558999999999999988887 466677766444332 233445
Q ss_pred cCCCeEEEEccccc----CCCCCCCeeEEEeccccccccccHHHHHHHH--HhcccCCeEEEEEeC
Q 006905 255 RGVPALIGVLAAER----LPYPSRAFDMAHCSRCLIPWNQFGGIYLIEV--DRVLRPGGYWILSGP 314 (626)
Q Consensus 255 rg~~~~~~v~d~~~----Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei--~RvLKPGG~lvis~p 314 (626)
.++...+...+... ......+||+|++...+ ..+....+.++ ..+|+|||++++..+
T Consensus 86 ~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DPPY---~~~~~~~l~~l~~~~ll~~~g~ivie~~ 148 (171)
T d1ws6a1 86 TGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPY---AMDLAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp HTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCT---TSCTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred hccccceeeeehhcccccccccCCccceeEEcccc---ccCHHHHHHHHHHcCCcCCCeEEEEEec
Confidence 56665555444322 23455789999997643 22233344444 357999999999754
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.49 E-value=1.6e-07 Score=96.02 Aligned_cols=96 Identities=14% Similarity=0.167 Sum_probs=71.3
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHH----HHHHhcc---cceeccccccCCCCC-Cccceeeecccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLG----VIYERGL---VGTYTNWCEAMSTYP-RTYDLIHADSVF 542 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~----~~~~rgl---i~~~~~~~e~~~~yp-~t~Dlih~~~~f 542 (626)
.+|||+|||+|.++..+++.+.- .|+.+|.+ .++. .+.+.|+ +-+++.-.+.+. +| ..||+|.+..++
T Consensus 40 ~~VLDlGcGtG~ls~~aa~~Ga~--~V~avd~s-~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~-~~~~~~D~i~se~~~ 115 (328)
T d1g6q1_ 40 KIVLDVGCGTGILSMFAAKHGAK--HVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVH-LPFPKVDIIISEWMG 115 (328)
T ss_dssp CEEEEETCTTSHHHHHHHHTCCS--EEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSC-CSSSCEEEEEECCCB
T ss_pred CEEEEeCCCCCHHHHHHHHhCCC--EEEEEeCC-HHHHHHHHHHHHhCccccceEEEeehhhcc-CcccceeEEEEEecc
Confidence 47999999999999999888642 46677777 4444 3445565 334443233332 44 899999998888
Q ss_pred ccCCCCCCHHHHHHHhhhhccCCcEEEE
Q 006905 543 SLYKDRCETEDILLEMDRILRPEGGVIF 570 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~dRiLRPgG~~i~ 570 (626)
......-.++.++.+++|+|||||.+|-
T Consensus 116 ~~~~~e~~~~~~~~a~~r~LkpgG~iiP 143 (328)
T d1g6q1_ 116 YFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeeccchhHHHHHHHHHhccCCCeEEEe
Confidence 8777767889999999999999999863
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.47 E-value=9.3e-08 Score=97.35 Aligned_cols=98 Identities=15% Similarity=0.112 Sum_probs=70.7
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccH---HHHHHhcc---cceeccccccCCCCCCccceeeecccccc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTL---GVIYERGL---VGTYTNWCEAMSTYPRTYDLIHADSVFSL 544 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l---~~~~~rgl---i~~~~~~~e~~~~yp~t~Dlih~~~~f~~ 544 (626)
.+|||+|||+|.++..+++.|.- .|+.+|.++.+. +.+...|+ |.+.+.-.+.+..-+..||+|.+..+...
T Consensus 35 ~~VLDiGcG~G~ls~~aa~~Ga~--~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~~ 112 (316)
T d1oria_ 35 KVVLDVGSGTGILCMFAAKAGAR--KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYC 112 (316)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCS--EEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBT
T ss_pred CEEEEEecCCcHHHHHHHHhCCC--EEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeeee
Confidence 56999999999999988888642 466777774322 23444566 33444322333322389999999888777
Q ss_pred CCCCCCHHHHHHHhhhhccCCcEEEE
Q 006905 545 YKDRCETEDILLEMDRILRPEGGVIF 570 (626)
Q Consensus 545 ~~~~c~~~~~l~E~dRiLRPgG~~i~ 570 (626)
......++.++.+++|+|||||.+|-
T Consensus 113 l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 113 LFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp BTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 77667889999999999999999874
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.46 E-value=1.2e-07 Score=90.01 Aligned_cols=42 Identities=19% Similarity=0.328 Sum_probs=35.4
Q ss_pred CCCCCeeEEEeccccccccccH-HHHHHHHHhcccCCeEEEEE
Q 006905 271 YPSRAFDMAHCSRCLIPWNQFG-GIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 271 f~d~sFDlV~~~~~l~h~~~~~-~~~L~Ei~RvLKPGG~lvis 312 (626)
.+.+.||+|+|.++|+.+.... ..++..+.++|+|||+|++.
T Consensus 128 ~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 128 NVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp CCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred CCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 3457899999999997776544 68999999999999998875
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.35 E-value=5.5e-07 Score=88.50 Aligned_cols=93 Identities=17% Similarity=0.123 Sum_probs=67.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEeccccc
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLI 286 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~ 286 (626)
..++|||||||+|.++..++++ .+++.|+ .+ .++.+ .....+.+..+|... +.| ..|++++.+++|
T Consensus 81 ~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-----p~-vi~~~-~~~~ri~~~~gd~~~-~~p--~~D~~~l~~vLh 150 (244)
T d1fp1d2 81 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-----PQ-VIENA-PPLSGIEHVGGDMFA-SVP--QGDAMILKAVCH 150 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-----HH-HHTTC-CCCTTEEEEECCTTT-CCC--CEEEEEEESSGG
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-----hh-hhhcc-CCCCCeEEecCCccc-ccc--cceEEEEehhhh
Confidence 3579999999999999999887 4555554 21 12111 112236666666432 333 459999999999
Q ss_pred cccccH-HHHHHHHHhcccCCeEEEEEe
Q 006905 287 PWNQFG-GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 287 h~~~~~-~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+|.++. ..+|+++.+.|+|||.++|..
T Consensus 151 ~~~de~~~~iL~~~~~aL~pgg~llI~e 178 (244)
T d1fp1d2 151 NWSDEKCIEFLSNCHKALSPNGKVIIVE 178 (244)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 998755 688999999999999999975
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.34 E-value=8.5e-07 Score=87.96 Aligned_cols=122 Identities=10% Similarity=0.052 Sum_probs=81.1
Q ss_pred ceecCCCCCCCCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcC
Q 006905 180 RFRFPGGGTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERG 256 (626)
Q Consensus 180 ~~~Fp~ggt~F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg 256 (626)
.+.+.-..++|..+-.....++.+.+ .+ +.+|||+|||+|.++..++++ .|+++|+++..+. .+.+.+..++
T Consensus 80 ~~~~d~~~~~f~~~~~~er~ri~~~~--~~--g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~-~~~~N~~~n~ 154 (260)
T d2frna1 80 KYKLDVAKIMFSPANVKERVRMAKVA--KP--DELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFK-FLVENIHLNK 154 (260)
T ss_dssp EEEEETTTSCCCGGGHHHHHHHHHHC--CT--TCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHH-HHHHHHHHTT
T ss_pred eEEeccccccEecCCHHHHHHHHhhc--CC--ccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHH-HHHHHHHHhC
Confidence 33443334555555444444455554 23 459999999999999988865 5889999885443 3334455556
Q ss_pred CC--eEEEEcccccCCCCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEE
Q 006905 257 VP--ALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 257 ~~--~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
+. +.+..+|+..++. .+.||.|+++... ....++.++.++|+|||.+.+.
T Consensus 155 l~~~v~~~~~D~~~~~~-~~~~D~Ii~~~p~-----~~~~~l~~a~~~l~~gG~lh~~ 206 (260)
T d2frna1 155 VEDRMSAYNMDNRDFPG-ENIADRILMGYVV-----RTHEFIPKALSIAKDGAIIHYH 206 (260)
T ss_dssp CTTTEEEECSCTTTCCC-CSCEEEEEECCCS-----SGGGGHHHHHHHEEEEEEEEEE
T ss_pred CCceEEEEEcchHHhcc-CCCCCEEEECCCC-----chHHHHHHHHhhcCCCCEEEEE
Confidence 53 5667778766653 5789999986421 2246788899999999998764
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=98.32 E-value=1e-07 Score=91.81 Aligned_cols=90 Identities=17% Similarity=0.084 Sum_probs=62.7
Q ss_pred ceeEEeccCchhhHhhhhhCC---CeEEEEeccCccCcccHHHHHHhc----ccceeccccccCCCCC--Cccceeeecc
Q 006905 470 YRNILDMNAHLGGFAAALIDF---PVWVMNVVPAEAKINTLGVIYERG----LVGTYTNWCEAMSTYP--RTYDLIHADS 540 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~---~v~~mnv~~~~~~~~~l~~~~~rg----li~~~~~~~e~~~~yp--~t~Dlih~~~ 540 (626)
--+|||+|||+|.+++.|++. .. .|+.+|.++.+++.+.++- +-.+..........+| .+||.|++..
T Consensus 76 g~~VLdiG~GtG~~s~~la~~~~~~g---~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~I~~~~ 152 (213)
T d1dl5a1 76 GMRVLEIGGGTGYNAAVMSRVVGEKG---LVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTV 152 (213)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECS
T ss_pred cceEEEecCccchhHHHHHHHhCCCC---cEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccchhhhhhhc
Confidence 558999999999999988753 22 4777888888888877653 2111111122334445 7899999987
Q ss_pred ccccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 541 VFSLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 541 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
.+.+.. .++-|.|||||.+|+-
T Consensus 153 ~~~~~p---------~~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 153 GVDEVP---------ETWFTQLKEGGRVIVP 174 (213)
T ss_dssp BBSCCC---------HHHHHHEEEEEEEEEE
T ss_pred cHHHhH---------HHHHHhcCCCcEEEEE
Confidence 765432 3566889999999984
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.31 E-value=3.3e-07 Score=93.56 Aligned_cols=102 Identities=13% Similarity=0.045 Sum_probs=72.2
Q ss_pred CCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEccccc----CCCCCCCeeEEEeccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAER----LPYPSRAFDMAHCSRC 284 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~----Lpf~d~sFDlV~~~~~ 284 (626)
+.+|||++||+|.++.+++.. .|+++|+++..+..+.. .+..+|+ .+.+...|... ++...++||+|++...
T Consensus 146 g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~-n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP 224 (318)
T d1wxxa2 146 GERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEE-NARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPP 224 (318)
T ss_dssp EEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHH-HHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHH-HHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcCC
Confidence 569999999999999988754 78999998866654443 4445666 46677777433 3445678999998543
Q ss_pred ccccc--------ccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 285 LIPWN--------QFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 285 l~h~~--------~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
-.... .....++..+.++|||||.++++..
T Consensus 225 ~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc 262 (318)
T d1wxxa2 225 AFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 262 (318)
T ss_dssp CSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 21111 1113678899999999999999754
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.27 E-value=1.7e-06 Score=82.24 Aligned_cols=70 Identities=13% Similarity=0.096 Sum_probs=53.2
Q ss_pred CCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEeccc
Q 006905 208 NDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRC 284 (626)
Q Consensus 208 ~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~ 284 (626)
.+-.+++|||+|||+|.++..++.+ .|+++|+++ .+++.|+++...+.+...|...++ +.||+|+++..
T Consensus 45 ~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~-----~a~~~ar~N~~~~~~~~~D~~~l~---~~fD~Vi~NPP 116 (197)
T d1ne2a_ 45 GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDP-----DAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPP 116 (197)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCH-----HHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCC
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCH-----HHHHHHHHccccccEEEEehhhcC---CcceEEEeCcc
Confidence 3444679999999999988777665 488888855 456667776666788888877764 67999999875
Q ss_pred c
Q 006905 285 L 285 (626)
Q Consensus 285 l 285 (626)
+
T Consensus 117 f 117 (197)
T d1ne2a_ 117 F 117 (197)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=98.24 E-value=6.4e-07 Score=88.41 Aligned_cols=110 Identities=16% Similarity=0.180 Sum_probs=75.8
Q ss_pred cCCCCCceeEEeccCchhhHhhhhhCC---CeEEEEeccCccCcccHHHHHHh----cc---cceec-cccccCCCCC-C
Q 006905 464 LGQSGRYRNILDMNAHLGGFAAALIDF---PVWVMNVVPAEAKINTLGVIYER----GL---VGTYT-NWCEAMSTYP-R 531 (626)
Q Consensus 464 ~~~~~~~r~vlD~g~g~G~faa~l~~~---~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~-~~~e~~~~yp-~ 531 (626)
|.+ | .+|||+|||+|+++.+|+.. .- .|..+|.++.+++.|.++ +. +...+ |.++. +| .
T Consensus 83 i~p-G--~rVLEiG~GsG~lt~~la~~v~~~g---~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~---~~~~ 153 (250)
T d1yb2a1 83 LRP-G--MDILEVGVGSGNMSSYILYALNGKG---TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF---ISDQ 153 (250)
T ss_dssp CCT-T--CEEEEECCTTSHHHHHHHHHHTTSS---EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC---CCSC
T ss_pred CCC-c--CEEEEeeeeCcHHHHHHHHHhCCCc---EEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc---cccc
Confidence 556 3 56999999999999888753 21 377888988999988875 22 23333 44433 34 8
Q ss_pred ccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC-hHHHHHHHHHHHhCCCe
Q 006905 532 TYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDD-VDELVKVKRIIDALKWQ 590 (626)
Q Consensus 532 t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~-~~~~~~~~~~~~~l~w~ 590 (626)
+||.|..+ --+...+|.++.|+|||||.+++.-+ .+.+.++.+.++.-.|.
T Consensus 154 ~fD~V~ld--------~p~p~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~gf~ 205 (250)
T d1yb2a1 154 MYDAVIAD--------IPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMH 205 (250)
T ss_dssp CEEEEEEC--------CSCGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEE
T ss_pred eeeeeeec--------CCchHHHHHHHHHhcCCCceEEEEeCCcChHHHHHHHHHHCCCc
Confidence 99999872 12335689999999999999998654 34455555555544453
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.23 E-value=1.8e-06 Score=88.04 Aligned_cols=102 Identities=15% Similarity=0.038 Sum_probs=71.1
Q ss_pred CCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEccccc----CCCCCCCeeEEEec
Q 006905 212 IRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAER----LPYPSRAFDMAHCS 282 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~----Lpf~d~sFDlV~~~ 282 (626)
+.+|||+|||+|.++..++.. .|+++|+++..+..+. +.+..+|+ .+.+..+|+.. ++....+||+|++.
T Consensus 146 g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~-~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~D 224 (324)
T d2as0a2 146 GDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAK-ENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD 224 (324)
T ss_dssp TCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHH-HHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHH-HHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhcC
Confidence 559999999999999998876 5889999885554333 34445666 35666676432 33456789999985
Q ss_pred cccccccc--------cHHHHHHHHHhcccCCeEEEEEeC
Q 006905 283 RCLIPWNQ--------FGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 283 ~~l~h~~~--------~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.....-.. ....++..+.++|+|||.|+++..
T Consensus 225 pP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~ 264 (324)
T d2as0a2 225 PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC 264 (324)
T ss_dssp CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 53211111 113578889999999999999864
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.22 E-value=5.5e-07 Score=81.92 Aligned_cols=99 Identities=10% Similarity=0.023 Sum_probs=66.7
Q ss_pred CCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEccccc-CCCCCCCeeEEEecccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAER-LPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~~-Lpf~d~sFDlV~~~~~l 285 (626)
+.+|||+|||+|.++..++.+ .|+++|.++..+.. ..+.+...+.. ..+...|+.. +....++||+|++...
T Consensus 15 g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~-~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP- 92 (152)
T d2esra1 15 GGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAI-IQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP- 92 (152)
T ss_dssp SCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHH-HHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS-
T ss_pred CCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhh-hhhhhhhcccccchhhhcccccccccccccccceeEechh-
Confidence 568999999999999888776 57888887744432 22333344443 5666666444 3455788999999763
Q ss_pred ccccccH-HHHHHHH--HhcccCCeEEEEEeC
Q 006905 286 IPWNQFG-GIYLIEV--DRVLRPGGYWILSGP 314 (626)
Q Consensus 286 ~h~~~~~-~~~L~Ei--~RvLKPGG~lvis~p 314 (626)
+.... ...+..+ .++|+|||.+++..+
T Consensus 93 --y~~~~~~~~l~~i~~~~~L~~~g~iiiE~~ 122 (152)
T d2esra1 93 --YAKETIVATIEALAAKNLLSEQVMVVCETD 122 (152)
T ss_dssp --SHHHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred --hccchHHHHHHHHHHCCCcCCCeEEEEEeC
Confidence 32222 4555544 367999999999754
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.16 E-value=6.7e-06 Score=78.12 Aligned_cols=72 Identities=10% Similarity=-0.034 Sum_probs=52.4
Q ss_pred CCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccc
Q 006905 210 GSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 210 ~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l 285 (626)
-.+.+|||+|||+|.++..++.+ .|+++|+++..+..+. +.+...+....+...|...+ +..||+|+++..+
T Consensus 45 l~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~-~N~~~~~~~~~~~~~d~~~~---~~~fD~Vi~nPP~ 119 (201)
T d1wy7a1 45 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLI-ENLGEFKGKFKVFIGDVSEF---NSRVDIVIMNPPF 119 (201)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHH-HHTGGGTTSEEEEESCGGGC---CCCCSEEEECCCC
T ss_pred CCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHH-HHHHHcCCCceEEECchhhh---CCcCcEEEEcCcc
Confidence 34669999999999998877766 5788888775444332 33445567777877776665 3579999998865
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=98.16 E-value=6.6e-07 Score=89.08 Aligned_cols=113 Identities=13% Similarity=0.131 Sum_probs=77.9
Q ss_pred cCCCCCceeEEeccCchhhHhhhhhCC---CeEEEEeccCccCcccHHHHHHh----cccceecc-ccccCCCCC-Cccc
Q 006905 464 LGQSGRYRNILDMNAHLGGFAAALIDF---PVWVMNVVPAEAKINTLGVIYER----GLVGTYTN-WCEAMSTYP-RTYD 534 (626)
Q Consensus 464 ~~~~~~~r~vlD~g~g~G~faa~l~~~---~v~~mnv~~~~~~~~~l~~~~~r----gli~~~~~-~~e~~~~yp-~t~D 534 (626)
|.+ --+|||+|||+|+++.+|+.. +- .|..+|.++.+++.|.++ |+...... .......++ ..||
T Consensus 101 i~p---G~~VLDiG~GsG~lt~~lA~~~~~~G---~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~~~~D 174 (266)
T d1o54a_ 101 VKE---GDRIIDTGVGSGAMCAVLARAVGSSG---KVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVD 174 (266)
T ss_dssp CCT---TCEEEEECCTTSHHHHHHHHHTTTTC---EEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEE
T ss_pred CCC---CCEEEECCCCCCHHHHHHHHHhCCCc---EEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccccccccee
Confidence 666 456999999999999999753 22 478889998999887654 33221110 111112344 7788
Q ss_pred eeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEE-cChHHHHHHHHHHHhCCCe
Q 006905 535 LIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFR-DDVDELVKVKRIIDALKWQ 590 (626)
Q Consensus 535 lih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~-d~~~~~~~~~~~~~~l~w~ 590 (626)
.|.. +-.+...+|.++.|+|||||.+++- -..+.+.++.+.++...|.
T Consensus 175 ~V~~--------d~p~p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~ 223 (266)
T d1o54a_ 175 ALFL--------DVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFI 223 (266)
T ss_dssp EEEE--------CCSCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEE
T ss_pred eeEe--------cCCCHHHHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCCce
Confidence 7654 3345678999999999999999875 4556667777777776774
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.12 E-value=8e-06 Score=76.34 Aligned_cols=132 Identities=11% Similarity=0.055 Sum_probs=78.2
Q ss_pred ccCCceecCCCCCCCCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHH
Q 006905 176 YEGDRFRFPGGGTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFA 252 (626)
Q Consensus 176 ~~ge~~~Fp~ggt~F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A 252 (626)
+.|..+..|.+...-+. .+...+.+..++... -.+.+|||++||+|.++...+.+ .|+.+|.++..+.....+ +
T Consensus 10 ~kg~~l~~~~~~~~RPt-~~~vre~lfn~l~~~-~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N-~ 86 (183)
T d2fpoa1 10 WRGRKLPVPDSPGLRPT-TDRVRETLFNWLAPV-IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKN-L 86 (183)
T ss_dssp GTTCEEECCCC-------CHHHHHHHHHHHHHH-HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHH-H
T ss_pred cCCCEecCCCCCCcCcC-cHHHHHHHHhhhhcc-cchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHH-H
Confidence 34566667665433222 223334444444311 12458999999999999988887 578888877544433333 3
Q ss_pred HHcCC-CeEEEEccccc-CCCCCCCeeEEEecccccccccc-HHHHHHHHHh--cccCCeEEEEEe
Q 006905 253 LERGV-PALIGVLAAER-LPYPSRAFDMAHCSRCLIPWNQF-GGIYLIEVDR--VLRPGGYWILSG 313 (626)
Q Consensus 253 ~erg~-~~~~~v~d~~~-Lpf~d~sFDlV~~~~~l~h~~~~-~~~~L~Ei~R--vLKPGG~lvis~ 313 (626)
...+. ...+...|+.. +......||+|++... +... ....+..+.+ +|+++|.+++..
T Consensus 87 ~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPP---Y~~~~~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 87 ATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPP---FRRGLLEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp HHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCS---SSTTTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hhccccceeeeeecccccccccccccCEEEEcCc---cccchHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 33344 34555555332 3445678999999874 3332 2556665554 699999999974
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=3.5e-06 Score=86.05 Aligned_cols=114 Identities=15% Similarity=0.167 Sum_probs=73.2
Q ss_pred cCCCCCceeEEeccCchhhHhhhhhC----CCeEEEEeccCccCcccHHHHHHhc-----------------ccceec-c
Q 006905 464 LGQSGRYRNILDMNAHLGGFAAALID----FPVWVMNVVPAEAKINTLGVIYERG-----------------LVGTYT-N 521 (626)
Q Consensus 464 ~~~~~~~r~vlD~g~g~G~faa~l~~----~~v~~mnv~~~~~~~~~l~~~~~rg-----------------li~~~~-~ 521 (626)
|.+ | -.|||+|||.|+++.+|+. .+ .|..+|.++.+++.|.++- -+...| |
T Consensus 96 i~p-G--~rVLE~GtGsG~lt~~LAr~vg~~G----~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~d 168 (324)
T d2b25a1 96 INP-G--DTVLEAGSGSGGMSLFLSKAVGSQG----RVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKD 168 (324)
T ss_dssp CCT-T--CEEEEECCTTSHHHHHHHHHHCTTC----EEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESC
T ss_pred CCC-C--CEEEEecccccHHHHHHHHHhCCCc----EEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecc
Confidence 666 4 3699999999999999975 33 3777888888988876531 122333 4
Q ss_pred ccccCCCCC-CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEE-cChHHHHHHHHHHH--hCCCeeE
Q 006905 522 WCEAMSTYP-RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFR-DDVDELVKVKRIID--ALKWQSQ 592 (626)
Q Consensus 522 ~~e~~~~yp-~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~-d~~~~~~~~~~~~~--~l~w~~~ 592 (626)
.++....++ .+||.|..+ .. +...+|.++.|+|||||.+++- -..+.+.++-+.++ ++.|...
T Consensus 169 i~~~~~~~~~~~fD~V~LD-----~p---~P~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~~~~f~~i 235 (324)
T d2b25a1 169 ISGATEDIKSLTFDAVALD-----ML---NPHVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSCE 235 (324)
T ss_dssp TTCCC-------EEEEEEC-----SS---STTTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEEEE
T ss_pred hhhcccccCCCCcceEeec-----Cc---CHHHHHHHHHHhccCCCEEEEEeCCHHHHHHHHHHHHHcCCCceee
Confidence 444444455 789988752 11 1134899999999999999874 45555555555554 5678543
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.01 E-value=4.6e-06 Score=81.68 Aligned_cols=92 Identities=12% Similarity=0.051 Sum_probs=67.1
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIP 287 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h 287 (626)
..+|||||||+|.++..++++ .+++.|+ . ..++.+. ....+.+..+|... +.+ .+|++++.++||+
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-----p-~vi~~~~-~~~rv~~~~gD~f~-~~p--~aD~~~l~~vLHd 150 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-----P-QVVENLS-GSNNLTYVGGDMFT-SIP--NADAVLLKYILHN 150 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-----H-HHHTTCC-CBTTEEEEECCTTT-CCC--CCSEEEEESCGGG
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEEecC-----H-HHHHhCc-ccCceEEEecCccc-CCC--CCcEEEEEeeccc
Confidence 468999999999999999886 4555665 2 1222221 12346777777543 323 5799999999999
Q ss_pred ccccH-HHHHHHHHhcccCC---eEEEEEe
Q 006905 288 WNQFG-GIYLIEVDRVLRPG---GYWILSG 313 (626)
Q Consensus 288 ~~~~~-~~~L~Ei~RvLKPG---G~lvis~ 313 (626)
|.++. ..+|+.+.+.|+|| |.++|..
T Consensus 151 w~d~~~~~iL~~~~~al~pgg~~~~lli~e 180 (244)
T d1fp2a2 151 WTDKDCLRILKKCKEAVTNDGKRGKVTIID 180 (244)
T ss_dssp SCHHHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred CChHHHHHHHHHHHHHcCcccCCcEEEEEE
Confidence 98765 68999999999998 7777764
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=97.99 E-value=4.8e-06 Score=84.70 Aligned_cols=102 Identities=11% Similarity=0.017 Sum_probs=71.0
Q ss_pred CCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC---CeEEEEccccc----CCCCCCCeeEEEe
Q 006905 212 IRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV---PALIGVLAAER----LPYPSRAFDMAHC 281 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~---~~~~~v~d~~~----Lpf~d~sFDlV~~ 281 (626)
+++|||+.||+|.++..++.. .|+++|+++..+..+..+.. .+++ ...+...|+.. +.-..+.||+|++
T Consensus 145 g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~-~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~ 223 (317)
T d2b78a2 145 GKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFE-ANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII 223 (317)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHH-HTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHH-HhcccCcceEEEEccHHHHHHHHHhhcCCCCEEEE
Confidence 559999999999999887664 58899999876665554443 4444 35677777432 2224568999998
Q ss_pred ccccc--------cccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 282 SRCLI--------PWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 282 ~~~l~--------h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
...-. ....+...++..+.++|+|||.|+++..
T Consensus 224 DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~sc 264 (317)
T d2b78a2 224 DPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 264 (317)
T ss_dssp CCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 54211 1111224688899999999999999864
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.98 E-value=7.3e-06 Score=81.26 Aligned_cols=112 Identities=13% Similarity=0.163 Sum_probs=74.8
Q ss_pred cCCCCCceeEEeccCchhhHhhhhhCC----CeEEEEeccCccCcccHHHHHHhc------ccceeccccccCC--CCC-
Q 006905 464 LGQSGRYRNILDMNAHLGGFAAALIDF----PVWVMNVVPAEAKINTLGVIYERG------LVGTYTNWCEAMS--TYP- 530 (626)
Q Consensus 464 ~~~~~~~r~vlD~g~g~G~faa~l~~~----~v~~mnv~~~~~~~~~l~~~~~rg------li~~~~~~~e~~~--~yp- 530 (626)
+.+ --+|||+|||.|+++.+|+.. + .|..+|.++.+++.|.++- ....++..+..+. .+|
T Consensus 94 i~P---G~~VLE~G~GsG~lt~~La~~vgp~G----~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~ 166 (264)
T d1i9ga_ 94 IFP---GARVLEAGAGSGALTLSLLRAVGPAG----QVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPD 166 (264)
T ss_dssp CCT---TCEEEEECCTTSHHHHHHHHHHCTTS----EEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCT
T ss_pred CCC---CCEEEecCcCCcHHHHHHHHhhCCCc----EEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccC
Confidence 666 457999999999999999753 3 3777888889999887631 1222222233333 456
Q ss_pred CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEc-ChHHHHHHHHHH-HhCCCe
Q 006905 531 RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRD-DVDELVKVKRII-DALKWQ 590 (626)
Q Consensus 531 ~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d-~~~~~~~~~~~~-~~l~w~ 590 (626)
.+||.|.. +.. +...++.++.|+|||||.+++-. ..+.+.++-+.+ ..-.|.
T Consensus 167 ~~fDaV~l-----dlp---~P~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~~~~~f~ 220 (264)
T d1i9ga_ 167 GSVDRAVL-----DML---APWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWT 220 (264)
T ss_dssp TCEEEEEE-----ESS---CGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBC
T ss_pred CCcceEEE-----ecC---CHHHHHHHHHhccCCCCEEEEEeCccChHHHHHHHHHHcCCee
Confidence 99998866 222 33568999999999999998854 454544444444 344463
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.98 E-value=7.4e-06 Score=78.64 Aligned_cols=96 Identities=20% Similarity=0.259 Sum_probs=65.8
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEccccc-CC-----CCCCCeeE
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAER-LP-----YPSRAFDM 278 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~-Lp-----f~d~sFDl 278 (626)
.++|||||||+|..+..|++. .++++|+++.....+. +.....|. .+.+..++... ++ +..+.||+
T Consensus 57 pk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~-~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ 135 (214)
T d2cl5a1 57 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQ-QMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 135 (214)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHH-HHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEE
T ss_pred CCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHH-HHHHHcCCCccceeeeccccccccchhhcccccccce
Confidence 458999999999999988864 5888888774444333 33334454 36677777433 22 45678999
Q ss_pred EEecccccccccc--HHHHHHHHHhcccCCeEEEEE
Q 006905 279 AHCSRCLIPWNQF--GGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 279 V~~~~~l~h~~~~--~~~~L~Ei~RvLKPGG~lvis 312 (626)
|+.-. +.+. ....+.+..++|||||++++.
T Consensus 136 ifiD~----~~~~~~~~~~l~~~~~lLkpGGvIv~D 167 (214)
T d2cl5a1 136 VFLDH----WKDRYLPDTLLLEKCGLLRKGTVLLAD 167 (214)
T ss_dssp EEECS----CGGGHHHHHHHHHHTTCEEEEEEEEES
T ss_pred eeecc----cccccccHHHHHHHhCccCCCcEEEEe
Confidence 99854 2222 245678889999999987764
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.96 E-value=2e-06 Score=90.39 Aligned_cols=101 Identities=8% Similarity=0.015 Sum_probs=67.0
Q ss_pred cCCCCCceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhcc------------cc-eeccccccCCCC
Q 006905 464 LGQSGRYRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERGL------------VG-TYTNWCEAMSTY 529 (626)
Q Consensus 464 ~~~~~~~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rgl------------i~-~~~~~~e~~~~y 529 (626)
|.+ --+|||+|||.|.++..++.. ++ -.|+++|.++.++.+|.++.- .+ +.......|..-
T Consensus 214 Lkp---gd~fLDLGCG~G~~vl~aA~~~g~--~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~ 288 (406)
T d1u2za_ 214 LKK---GDTFMDLGSGVGNCVVQAALECGC--ALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDN 288 (406)
T ss_dssp CCT---TCEEEEESCTTSHHHHHHHHHHCC--SEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTC
T ss_pred CCC---CCEEEeCCCCCcHHHHHHHHHcCC--CeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhc
Confidence 555 346999999999999888765 43 268999999999998877642 01 000111222221
Q ss_pred C------CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 530 P------RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 530 p------~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
+ ...|+|.++. +.+.. ++...|.||.|+|||||.+|.++.
T Consensus 289 ~~~d~~~~~adVV~inn-~~f~~---~l~~~L~ei~r~LKPGGrIVs~~~ 334 (406)
T d1u2za_ 289 NRVAELIPQCDVILVNN-FLFDE---DLNKKVEKILQTAKVGCKIISLKS 334 (406)
T ss_dssp HHHHHHGGGCSEEEECC-TTCCH---HHHHHHHHHHTTCCTTCEEEESSC
T ss_pred cccccccccceEEEEec-ccCch---HHHHHHHHHHHhcCCCcEEEEecc
Confidence 1 3456666532 22222 567899999999999999998764
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=97.96 E-value=3.7e-06 Score=83.87 Aligned_cols=132 Identities=12% Similarity=0.230 Sum_probs=89.9
Q ss_pred eeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhc----c--cceec-cccccCCCCC-Cccceeeeccc
Q 006905 471 RNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERG----L--VGTYT-NWCEAMSTYP-RTYDLIHADSV 541 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rg----l--i~~~~-~~~e~~~~yp-~t~Dlih~~~~ 541 (626)
..|||+|||+|-.|..|+.. +- ..|+.+|.++..+.++.+.- + +.+++ ||.+ .++ ..||+|.|+-=
T Consensus 110 ~~vlDlGtGSG~I~i~la~~~p~--~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~---~~~~~~fDlIvsNPP 184 (274)
T d2b3ta1 110 CRILDLGTGTGAIALALASERPD--CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS---ALAGQQFAMIVSNPP 184 (274)
T ss_dssp CEEEEETCTTSHHHHHHHHHCTT--SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG---GGTTCCEEEEEECCC
T ss_pred cceeeeehhhhHHHHHHHhhCCc--ceeeeccchhHHHhHHHHHHHHhCcccceeeeccccc---ccCCCceeEEEecch
Confidence 34999999999999999764 22 27899999988988766542 2 44454 4543 345 69999999733
Q ss_pred cc-------------cCCCC---------CCHHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHhCCCe-eEEeecCC
Q 006905 542 FS-------------LYKDR---------CETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQ-SQIVDHED 598 (626)
Q Consensus 542 f~-------------~~~~~---------c~~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~l~w~-~~~~~~e~ 598 (626)
+- +.... -.+..++.+..+.|+|||++++--..+....+.+++....|. +.++. |
T Consensus 185 Yi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~q~~~v~~~l~~~gf~~i~~~k--D 262 (274)
T d2b3ta1 185 YIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCR--D 262 (274)
T ss_dssp CBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEE--C
T ss_pred hhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCCeEEEEE--C
Confidence 21 11100 012358899999999999999964444567888998888886 33322 2
Q ss_pred CCCCcceEEEEE
Q 006905 599 GPLEREKLLFAV 610 (626)
Q Consensus 599 ~~~~~e~~l~~~ 610 (626)
- .+..++++++
T Consensus 263 l-~g~~R~v~~r 273 (274)
T d2b3ta1 263 Y-GDNERVTLGR 273 (274)
T ss_dssp T-TSSEEEEEEE
T ss_pred C-CCCceEEEEe
Confidence 1 2578888875
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=1.7e-06 Score=83.84 Aligned_cols=90 Identities=17% Similarity=0.185 Sum_probs=60.4
Q ss_pred ceeEEeccCchhhHhhhhhCC---CeEEEEeccCccCcccHHHHHHh----cc----cceecccccc-CCCCC--Cccce
Q 006905 470 YRNILDMNAHLGGFAAALIDF---PVWVMNVVPAEAKINTLGVIYER----GL----VGTYTNWCEA-MSTYP--RTYDL 535 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~---~v~~mnv~~~~~~~~~l~~~~~r----gl----i~~~~~~~e~-~~~yp--~t~Dl 535 (626)
--+|||+|||+|.+++.|++. .- .|+.+|..+.+++.+.++ ++ +......+.+ +..+| ..||.
T Consensus 77 g~~VLdiG~GsGy~ta~la~l~~~~g---~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~ 153 (224)
T d1i1na_ 77 GAKALDVGSGSGILTACFARMVGCTG---KVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 153 (224)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCeEEEecCCCCHHHHHHHHHhCCCc---eEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhh
Confidence 457999999999988877653 22 477888888888877544 22 1111111222 23344 78999
Q ss_pred eeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 536 IHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 536 ih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
|++.....+. ..++-+.|||||.+|+-
T Consensus 154 I~~~~~~~~i---------p~~l~~~LkpGG~LV~p 180 (224)
T d1i1na_ 154 IHVGAAAPVV---------PQALIDQLKPGGRLILP 180 (224)
T ss_dssp EEECSBBSSC---------CHHHHHTEEEEEEEEEE
T ss_pred hhhhcchhhc---------CHHHHhhcCCCcEEEEE
Confidence 9997665543 34667899999999984
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=97.92 E-value=3e-06 Score=86.30 Aligned_cols=123 Identities=20% Similarity=0.172 Sum_probs=80.2
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceec-c---ccccCCCCCCccceeeec
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYT-N---WCEAMSTYPRTYDLIHAD 539 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~-~---~~e~~~~yp~t~Dlih~~ 539 (626)
-.+|||++||+|+|+.+++..+ .+|+.+|.++.+++.+.+. |+ +.+++ | |.+.+....++||+|.++
T Consensus 146 g~rVLDl~~gtG~~s~~~a~g~---~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D 222 (318)
T d1wxxa2 146 GERALDVFSYAGGFALHLALGF---REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 222 (318)
T ss_dssp EEEEEEETCTTTHHHHHHHHHE---EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeeeccCCCCcHHHHHHHhcC---CcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence 4689999999999999998543 3789999999999877654 33 11222 1 122222233799999985
Q ss_pred cc-cccCCC-----CCCHHHHHHHhhhhccCCcEEEEEcC------hHHHHHHHHHHHhCCCeeEEee
Q 006905 540 SV-FSLYKD-----RCETEDILLEMDRILRPEGGVIFRDD------VDELVKVKRIIDALKWQSQIVD 595 (626)
Q Consensus 540 ~~-f~~~~~-----~c~~~~~l~E~dRiLRPgG~~i~~d~------~~~~~~~~~~~~~l~w~~~~~~ 595 (626)
-= |+.... ......++..+-++|||||.++++.. .+..+.|.+.+..-..+.++..
T Consensus 223 pP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~~~a~~~~~~~~ 290 (318)
T d1wxxa2 223 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVVE 290 (318)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 32 221111 01223588899999999999999632 2345556666666666666553
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.91 E-value=2.1e-06 Score=87.76 Aligned_cols=94 Identities=11% Similarity=0.031 Sum_probs=64.8
Q ss_pred ceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhc-----------c----cceeccccccCCCCC---
Q 006905 470 YRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERG-----------L----VGTYTNWCEAMSTYP--- 530 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rg-----------l----i~~~~~~~e~~~~yp--- 530 (626)
--+|||+|||.|.++..++.. +. .+++++|.++.++.++-++. + |... +..|...|
T Consensus 152 ~~~vlD~GcG~G~~~~~~a~~~~~--~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~---~gd~~~~~~~~ 226 (328)
T d1nw3a_ 152 DDLFVDLGSGVGQVVLQVAAATNC--KHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLE---RGDFLSEEWRE 226 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHHHCCC--SEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEE---ECCTTSHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHhCC--CeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEE---ECccccccccc
Confidence 446999999999999877643 43 36889999988888776541 1 2233 34555444
Q ss_pred Ccc--ceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 531 RTY--DLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 531 ~t~--Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
..+ |+|-++. |.+.. ++...|.||-|+|||||.+|+.+
T Consensus 227 ~~~~advi~~~~-~~f~~---~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 227 RIANTSVIFVNN-FAFGP---EVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp HHHHCSEEEECC-TTTCH---HHHHHHHHHHTTCCTTCEEEESS
T ss_pred ccCcceEEEEcc-eecch---HHHHHHHHHHHhCCCCcEEEEec
Confidence 334 5665532 33332 56789999999999999999865
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.91 E-value=3.8e-05 Score=73.81 Aligned_cols=97 Identities=16% Similarity=0.132 Sum_probs=68.2
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCC--CeEEEEccccc-CC-----CCCCCeeE
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGV--PALIGVLAAER-LP-----YPSRAFDM 278 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~--~~~~~v~d~~~-Lp-----f~d~sFDl 278 (626)
.++|||||||+|.-+..+++. .++++|.++.....+ .+...+.|. .+.+..+++.. ++ ...++||+
T Consensus 60 ~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A-~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~ 138 (219)
T d2avda1 60 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELG-RPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV 138 (219)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHH-HHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred CCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHH-HHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccE
Confidence 458999999999999998874 688888888444333 333334444 35566666322 22 23678999
Q ss_pred EEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 279 AHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 279 V~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
|+... .......++..+.+.|+|||.+++..
T Consensus 139 ifiD~----dk~~y~~~~~~~~~lL~~GGvii~Dn 169 (219)
T d2avda1 139 AVVDA----DKENCSAYYERCLQLLRPGGILAVLR 169 (219)
T ss_dssp EEECS----CSTTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEeC----CHHHHHHHHHHHHHHhcCCcEEEEeC
Confidence 99854 33444678899999999999999973
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.89 E-value=9.7e-06 Score=79.10 Aligned_cols=92 Identities=14% Similarity=0.070 Sum_probs=66.2
Q ss_pred CCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIP 287 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h 287 (626)
.++|||||||+|.++..++++ .+++.|+... + +.+ .....+.+...|... +.|. .|+++..+++|+
T Consensus 82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i-----~~~-~~~~r~~~~~~d~~~-~~P~--ad~~~l~~vlh~ 151 (243)
T d1kyza2 82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-I-----EDA-PSYPGVEHVGGDMFV-SIPK--ADAVFMKWICHD 151 (243)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-T-----TTC-CCCTTEEEEECCTTT-CCCC--CSCEECSSSSTT
T ss_pred CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-h-----hhc-ccCCceEEecccccc-cCCC--cceEEEEEEeec
Confidence 568999999999999999986 5667776432 1 111 112345666666432 3343 567788899988
Q ss_pred ccccH-HHHHHHHHhcccCCeEEEEEe
Q 006905 288 WNQFG-GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 288 ~~~~~-~~~L~Ei~RvLKPGG~lvis~ 313 (626)
|.++. ..+|+++.+.|+|||.++|..
T Consensus 152 ~~d~~~~~iL~~~~~al~pgg~~li~d 178 (243)
T d1kyza2 152 WSDEHCLKFLKNCYEALPDNGKVIVAE 178 (243)
T ss_dssp SCHHHHHHHHHHHHHHCCSSSCEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEEE
Confidence 87654 789999999999999999975
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=97.88 E-value=6.4e-06 Score=79.72 Aligned_cols=88 Identities=15% Similarity=0.166 Sum_probs=61.6
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc----cceeccccccCCCCC--Cccceeeeccccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL----VGTYTNWCEAMSTYP--RTYDLIHADSVFS 543 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl----i~~~~~~~e~~~~yp--~t~Dlih~~~~f~ 543 (626)
--+|||+|||+|.+++.|++..- .|+.+|..+..+..+.++-- +.+.+ ...+..+| ..||.|++.....
T Consensus 71 g~~VLdIG~GsGy~ta~La~l~~---~V~aiE~~~~~~~~A~~~~~~~~nv~~~~--~d~~~g~~~~~pfD~Iiv~~a~~ 145 (224)
T d1vbfa_ 71 GQKVLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYASKLLSYYNNIKLIL--GDGTLGYEEEKPYDRVVVWATAP 145 (224)
T ss_dssp TCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTCSSEEEEE--SCGGGCCGGGCCEEEEEESSBBS
T ss_pred cceEEEecCCCCHHHHHHHHHhc---ccccccccHHHHHHHHHHHhccccccccc--CchhhcchhhhhHHHHHhhcchh
Confidence 44799999999999999887643 57788888788887766522 22232 12234466 6799999866654
Q ss_pred cCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 544 LYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 544 ~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
+. ..++-+.|+|||.+|+-
T Consensus 146 ~i---------p~~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 146 TL---------LCKPYEQLKEGGIMILP 164 (224)
T ss_dssp SC---------CHHHHHTEEEEEEEEEE
T ss_pred hh---------hHHHHHhcCCCCEEEEE
Confidence 33 23445679999999984
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=97.86 E-value=5.9e-05 Score=74.77 Aligned_cols=118 Identities=15% Similarity=0.136 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEccc-c
Q 006905 194 ADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAA-E 267 (626)
Q Consensus 194 a~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~-~ 267 (626)
.+..++.+.+.+.... ..++||+|||+|..+..++.. .|+++|+++..+.-+. +.+...+.. ..+...+. .
T Consensus 95 TE~lv~~~~~~~~~~~--~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~-~Na~~~~~~~~~~i~~~~~~~ 171 (271)
T d1nv8a_ 95 TEELVELALELIRKYG--IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIAR-KNAERHGVSDRFFVRKGEFLE 171 (271)
T ss_dssp HHHHHHHHHHHHHHHT--CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHH-HHHHHTTCTTSEEEEESSTTG
T ss_pred hhhhhhhhhhhhcccc--ccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHH-HHHHHcCCCceeEEeeccccc
Confidence 3444454554443332 448999999999888777654 6889999885554333 334455553 33333342 2
Q ss_pred cCCCCCCCeeEEEeccccccccc------------------cH-HHHHHHHHhcccCCeEEEEEeC
Q 006905 268 RLPYPSRAFDMAHCSRCLIPWNQ------------------FG-GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 268 ~Lpf~d~sFDlV~~~~~l~h~~~------------------~~-~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.++...+.||+|+|+...+.-.+ +. ..+-+-+.+.|+|||.+++...
T Consensus 172 ~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig 237 (271)
T d1nv8a_ 172 PFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG 237 (271)
T ss_dssp GGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred ccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEEC
Confidence 23333478999999865432110 00 1122235688999999999854
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.84 E-value=4e-05 Score=71.43 Aligned_cols=132 Identities=15% Similarity=0.044 Sum_probs=80.9
Q ss_pred cCCceecCCCCCCCCCcHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHH
Q 006905 177 EGDRFRFPGGGTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFAL 253 (626)
Q Consensus 177 ~ge~~~Fp~ggt~F~~ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~ 253 (626)
.|..+.+|.+...-+ ..+..-+.+..++... -.+.+|||++||+|.++...+.+ .|+.+|.++..+..... .+.
T Consensus 9 kg~~l~~~~~~~~RP-t~~~vrealFn~l~~~-~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~-N~~ 85 (182)
T d2fhpa1 9 GGRRLKALDGDNTRP-TTDKVKESIFNMIGPY-FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKE-NIA 85 (182)
T ss_dssp TTCBCCCCCCCSSCC-CCHHHHHHHHHHHCSC-CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHH-HHH
T ss_pred CCCEecCCCCCCcCc-CcHHHHHHHHHHHHHh-cCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHH-Hhh
Confidence 455666665543322 2333444555666421 23569999999999999998887 47788886643333222 222
Q ss_pred HcCC--CeEEEEccccc-C---CCCCCCeeEEEecccccccccc-HHHHHHHHHh--cccCCeEEEEEeC
Q 006905 254 ERGV--PALIGVLAAER-L---PYPSRAFDMAHCSRCLIPWNQF-GGIYLIEVDR--VLRPGGYWILSGP 314 (626)
Q Consensus 254 erg~--~~~~~v~d~~~-L---pf~d~sFDlV~~~~~l~h~~~~-~~~~L~Ei~R--vLKPGG~lvis~p 314 (626)
..+. ...+...|+.+ + .-....||+|++... +... ....+..+.. +|+|+|.+++...
T Consensus 86 ~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIflDPP---Y~~~~~~~~l~~i~~~~~L~~~giIi~E~~ 152 (182)
T d2fhpa1 86 ITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPP---YAKQEIVSQLEKMLERQLLTNEAVIVCETD 152 (182)
T ss_dssp HHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCC---GGGCCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred hhhcccccccccccchhhhhhhcccCCCcceEEechh---hhhhHHHHHHHHHHHCCCCCCCEEEEEEcC
Confidence 3333 35566666433 2 223557999999773 3322 3566777654 6999999998743
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.78 E-value=2.9e-05 Score=78.42 Aligned_cols=111 Identities=9% Similarity=0.041 Sum_probs=69.6
Q ss_pred HHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC---CeEEEEcccccC----C
Q 006905 200 DIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV---PALIGVLAAERL----P 270 (626)
Q Consensus 200 ~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~---~~~~~v~d~~~L----p 270 (626)
.+.+.+... ..+.+|||+.||+|.++..++.. .|++||.+...+..+..+... +++ .+.+.+.|+... .
T Consensus 122 ~~~~~~~~~-~~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~l-n~~~~~~~~~i~~D~~~~l~~~~ 199 (309)
T d2igta1 122 WLKNAVETA-DRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVL-AGLEQAPIRWICEDAMKFIQREE 199 (309)
T ss_dssp HHHHHHHHS-SSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHH-HTCTTSCEEEECSCHHHHHHHHH
T ss_pred HHHHHHhhc-cCCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhh-hcccCCcEEEEeCCHHHhHHHHh
Confidence 444444322 22558999999999999998886 577777777555544443333 343 366777774332 2
Q ss_pred CCCCCeeEEEeccccc-------ccc--ccHHHHHHHHHhcccCCeEEEEE
Q 006905 271 YPSRAFDMAHCSRCLI-------PWN--QFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 271 f~d~sFDlV~~~~~l~-------h~~--~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
...+.||+|++..--. .|. .+...++..+.++|+|||.+++.
T Consensus 200 ~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~ 250 (309)
T d2igta1 200 RRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVL 250 (309)
T ss_dssp HHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEE
T ss_pred hcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 2357899999843210 111 12245667788999999976665
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.75 E-value=3e-05 Score=73.12 Aligned_cols=110 Identities=13% Similarity=0.153 Sum_probs=73.0
Q ss_pred HHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHc----CCCeEEEEcccccC
Q 006905 198 IDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALER----GVPALIGVLAAERL 269 (626)
Q Consensus 198 i~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~er----g~~~~~~v~d~~~L 269 (626)
++++.+++...+ +.++||++||+|.++..++++ .++++|.++. +++.|.++ +..+.+...+...+
T Consensus 12 l~evi~~l~~~~--~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~-----~l~~a~~~l~~~~~r~~~~~~~f~~~ 84 (192)
T d1m6ya2 12 VREVIEFLKPED--EKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSE-----VLRIAEEKLKEFSDRVSLFKVSYREA 84 (192)
T ss_dssp HHHHHHHHCCCT--TCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHH-----HHHHHHHHTGGGTTTEEEEECCGGGH
T ss_pred HHHHHHhhCCCC--CCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHH-----HHHHHHHhhccccccccchhHHHhhH
Confidence 344555554443 559999999999999888885 5777777664 44444433 34566666654443
Q ss_pred -----CCCCCCeeEEEeccccc--cc------cccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 270 -----PYPSRAFDMAHCSRCLI--PW------NQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 270 -----pf~d~sFDlV~~~~~l~--h~------~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.+..++||.|+.-..+. ++ .......|..+.++|+|||.+++...
T Consensus 85 ~~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f 142 (192)
T d1m6ya2 85 DFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISF 142 (192)
T ss_dssp HHHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEES
T ss_pred HHHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecc
Confidence 24467899998654331 11 11225789999999999999998753
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=8.5e-05 Score=72.64 Aligned_cols=93 Identities=15% Similarity=0.202 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhhccC---CCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEc
Q 006905 194 ADAYIDDIGKLINLN---DGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVP--ALIGVL 264 (626)
Q Consensus 194 a~~yi~~L~~ll~l~---~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~--~~~~v~ 264 (626)
...|+..+.+++... .....++||||||+|..+..|+.+ .++++|+++..+.-+..+ ++..++. +.+...
T Consensus 41 r~~~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N-~~~n~l~~~~~~~~~ 119 (250)
T d2h00a1 41 RLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKN-VEQNNLSDLIKVVKV 119 (250)
T ss_dssp HHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHH-HHHTTCTTTEEEEEC
T ss_pred HHHHHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHH-HHHhCCCcceeeeee
Confidence 345666677766422 233568999999999888888775 788999988655544443 3344543 333332
Q ss_pred ccccC------CCCCCCeeEEEecccccc
Q 006905 265 AAERL------PYPSRAFDMAHCSRCLIP 287 (626)
Q Consensus 265 d~~~L------pf~d~sFDlV~~~~~l~h 287 (626)
+.... ...+++||+|+|+.-+++
T Consensus 120 ~~~~~~~~~~~~~~~~~fD~ivsNPPY~~ 148 (250)
T d2h00a1 120 PQKTLLMDALKEESEIIYDFCMCNPPFFA 148 (250)
T ss_dssp CTTCSSTTTSTTCCSCCBSEEEECCCCC-
T ss_pred ccHHhhhhhhhhcccCceeEEEecCcccc
Confidence 22111 123568999999987653
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.73 E-value=6.2e-05 Score=75.95 Aligned_cols=102 Identities=13% Similarity=0.065 Sum_probs=68.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhC---------CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEe
Q 006905 211 SIRTAIDTGCGVASWGAYLLSR---------NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHC 281 (626)
Q Consensus 211 ~~~~VLDIGCGtG~~a~~La~~---------~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~ 281 (626)
.+.+|||.|||+|.+...+.++ .++++|+++.....+.... ...+........+.... .+...||+|++
T Consensus 117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~-~~~~~~~~~~~~d~~~~-~~~~~fD~vi~ 194 (328)
T d2f8la1 117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGA-DLQRQKMTLLHQDGLAN-LLVDPVDVVIS 194 (328)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHH-HHHTCCCEEEESCTTSC-CCCCCEEEEEE
T ss_pred CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHH-HHhhhhhhhhccccccc-ccccccccccc
Confidence 3558999999999998877542 4778888775444333322 23455556655553332 34568999999
Q ss_pred cccccccccc-----------------HHHHHHHHHhcccCCeEEEEEeC
Q 006905 282 SRCLIPWNQF-----------------GGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 282 ~~~l~h~~~~-----------------~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+..+...... ...++..+.+.|+|||++++..|
T Consensus 195 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p 244 (328)
T d2f8la1 195 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 244 (328)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEec
Confidence 8865321111 12468889999999999998876
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=97.68 E-value=3.8e-05 Score=76.23 Aligned_cols=153 Identities=10% Similarity=0.111 Sum_probs=97.5
Q ss_pred hhhhHHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc---c
Q 006905 444 QQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL---V 516 (626)
Q Consensus 444 ~~d~~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl---i 516 (626)
+.||+.+...+..+... .....|+|+|||.|..+.++++.+- .+|+.+|.++..++++.+. |+ +
T Consensus 92 RpeTE~lv~~~~~~~~~-------~~~~~vld~g~GsG~i~~~la~~~~--~~v~a~Dis~~Al~~A~~Na~~~~~~~~~ 162 (271)
T d1nv8a_ 92 RPETEELVELALELIRK-------YGIKTVADIGTGSGAIGVSVAKFSD--AIVFATDVSSKAVEIARKNAERHGVSDRF 162 (271)
T ss_dssp CTTHHHHHHHHHHHHHH-------HTCCEEEEESCTTSHHHHHHHHHSS--CEEEEEESCHHHHHHHHHHHHHTTCTTSE
T ss_pred hhhhhhhhhhhhhhhcc-------ccccEEEEeeeeeehhhhhhhhccc--ceeeechhhhhHHHHHHHHHHHcCCCcee
Confidence 34567777666555432 2245799999999999888876543 2688999999999887764 33 3
Q ss_pred ceec-cccccCCCCCCccceeeeccc-------cc----cC------CCCCCHHHHHHHhhhhccCCcEEEEEcChHHHH
Q 006905 517 GTYT-NWCEAMSTYPRTYDLIHADSV-------FS----LY------KDRCETEDILLEMDRILRPEGGVIFRDDVDELV 578 (626)
Q Consensus 517 ~~~~-~~~e~~~~yp~t~Dlih~~~~-------f~----~~------~~~c~~~~~l~E~dRiLRPgG~~i~~d~~~~~~ 578 (626)
.+.+ +|.+.+......||+|.|+== .. +. .....+..+-.=+.++|+|||++++--..+.-+
T Consensus 163 ~i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~~Q~~ 242 (271)
T d1nv8a_ 163 FVRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVE 242 (271)
T ss_dssp EEEESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHH
T ss_pred EEeecccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECHHHHH
Confidence 3444 455544434478999998721 11 00 001112221111368899999999965555667
Q ss_pred HHHHHHHhCCCeeEEeecCCCCCCcceEEEEEec
Q 006905 579 KVKRIIDALKWQSQIVDHEDGPLEREKLLFAVKL 612 (626)
Q Consensus 579 ~~~~~~~~l~w~~~~~~~e~~~~~~e~~l~~~K~ 612 (626)
+|+++++...| ..|.. +.+++++++|+
T Consensus 243 ~v~~l~~~~g~---~kDl~----g~~R~~~~~k~ 269 (271)
T d1nv8a_ 243 ELKKIVSDTVF---LKDSA----GKYRFLLLNRR 269 (271)
T ss_dssp HHTTTSTTCEE---EECTT----SSEEEEEEECC
T ss_pred HHHHHHHhCCE---EeccC----CCcEEEEEEEc
Confidence 78888776655 23322 67899999986
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.65 E-value=7.1e-06 Score=80.37 Aligned_cols=93 Identities=15% Similarity=0.222 Sum_probs=66.6
Q ss_pred CCceeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHHHhcc---ccee-ccccccCCCCCCccceeeeccc
Q 006905 468 GRYRNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIYERGL---VGTY-TNWCEAMSTYPRTYDLIHADSV 541 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~~rgl---i~~~-~~~~e~~~~yp~t~Dlih~~~~ 541 (626)
..+++|||+|||.|.++.+++++ .+ .++-.|.+ .+ +-+.+. |... +| .|...| ..|++...++
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l---~~~v~Dlp-~v---i~~~~~~~ri~~~~gd---~~~~~p-~~D~~~l~~v 148 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIISKYPLI---KGINFDLP-QV---IENAPPLSGIEHVGGD---MFASVP-QGDAMILKAV 148 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTC---EEEEEECH-HH---HTTCCCCTTEEEEECC---TTTCCC-CEEEEEEESS
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCC---eEEEecch-hh---hhccCCCCCeEEecCC---cccccc-cceEEEEehh
Confidence 67899999999999999999865 23 33444554 22 223332 2222 33 345567 4599999999
Q ss_pred cccCCCCCCHHHHHHHhhhhccCCcEEEEEc
Q 006905 542 FSLYKDRCETEDILLEMDRILRPEGGVIFRD 572 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d 572 (626)
+.++.+. +...+|..+.+.|+|||.++|.|
T Consensus 149 Lh~~~de-~~~~iL~~~~~aL~pgg~llI~e 178 (244)
T d1fp1d2 149 CHNWSDE-KCIEFLSNCHKALSPNGKVIIVE 178 (244)
T ss_dssp GGGSCHH-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhCCHH-HHHHHHHHHHHHcCCCcEEEEEE
Confidence 9998752 44579999999999999999976
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.65 E-value=8.2e-05 Score=73.25 Aligned_cols=133 Identities=15% Similarity=0.239 Sum_probs=89.2
Q ss_pred hchhhhHHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--
Q 006905 442 IFQQNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL-- 515 (626)
Q Consensus 442 ~f~~d~~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl-- 515 (626)
.|..++...+.++. ..+.+ -.+|||||||+|+|+..+++++. -.|+.+|.+++.++.+.+. |+
T Consensus 89 ~f~~~~~~er~ri~------~~~~~---g~~VlD~~aG~G~~~l~~a~~~~--~~V~avd~n~~a~~~~~~N~~~n~l~~ 157 (260)
T d2frna1 89 MFSPANVKERVRMA------KVAKP---DELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVED 157 (260)
T ss_dssp CCCGGGHHHHHHHH------HHCCT---TCEEEETTCTTTTTHHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTT
T ss_pred cEecCCHHHHHHHH------hhcCC---ccEEEECcceEcHHHHHHHHhCC--cEEEEecCCHHHHHHHHHHHHHhCCCc
Confidence 36666666665543 22444 45799999999999999887763 2688999988888766543 33
Q ss_pred -cceeccccccCCCCC--CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC-------hHHHHHHHHHHH
Q 006905 516 -VGTYTNWCEAMSTYP--RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDD-------VDELVKVKRIID 585 (626)
Q Consensus 516 -i~~~~~~~e~~~~yp--~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~-------~~~~~~~~~~~~ 585 (626)
+-+++ .+...++ ..||.|..+... .-...|.+.-++|+|||++.+-+. .+..+.++++++
T Consensus 158 ~v~~~~---~D~~~~~~~~~~D~Ii~~~p~-------~~~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~ 227 (260)
T d2frna1 158 RMSAYN---MDNRDFPGENIADRILMGYVV-------RTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITK 227 (260)
T ss_dssp TEEEEC---SCTTTCCCCSCEEEEEECCCS-------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHH
T ss_pred eEEEEE---cchHHhccCCCCCEEEECCCC-------chHHHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHH
Confidence 33343 3444454 789988764221 124567788899999999876421 134677888888
Q ss_pred hCCCeeEEee
Q 006905 586 ALKWQSQIVD 595 (626)
Q Consensus 586 ~l~w~~~~~~ 595 (626)
...+++.+..
T Consensus 228 ~~g~~v~~~~ 237 (260)
T d2frna1 228 EYGYDVEKLN 237 (260)
T ss_dssp HTTCEEEEEE
T ss_pred HcCCceEEEE
Confidence 8888876543
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.60 E-value=8.6e-05 Score=69.79 Aligned_cols=107 Identities=16% Similarity=0.177 Sum_probs=70.3
Q ss_pred HHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCC
Q 006905 196 AYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLP 270 (626)
Q Consensus 196 ~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lp 270 (626)
...+.+.+++.... +.+|||.|||+|.|...+.++ .+.++|+++.... ......+...+.....
T Consensus 6 ~i~~~m~~l~~~~~--~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~---------~~~~~~~~~~~~~~~~ 74 (223)
T d2ih2a1 6 EVVDFMVSLAEAPR--GGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD---------LPPWAEGILADFLLWE 74 (223)
T ss_dssp HHHHHHHHHCCCCT--TCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCC---------CCTTEEEEESCGGGCC
T ss_pred HHHHHHHHhcCCCC--cCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHh---------hcccceeeeeehhccc
Confidence 34555666665443 459999999999998887653 4888898764321 1122344555544333
Q ss_pred CCCCCeeEEEeccccccccc----------------------------cHHHHHHHHHhcccCCeEEEEEeC
Q 006905 271 YPSRAFDMAHCSRCLIPWNQ----------------------------FGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 271 f~d~sFDlV~~~~~l~h~~~----------------------------~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
....||+|+++..+..... -...++....+.|+|||++++..|
T Consensus 75 -~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p 145 (223)
T d2ih2a1 75 -PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 145 (223)
T ss_dssp -CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEe
Confidence 3468999999776532110 013567888999999999999876
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.60 E-value=8.3e-05 Score=73.82 Aligned_cols=112 Identities=13% Similarity=0.109 Sum_probs=71.0
Q ss_pred HHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHc---------------CC
Q 006905 196 AYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALER---------------GV 257 (626)
Q Consensus 196 ~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~er---------------g~ 257 (626)
.|-+.+....-......++||-||+|.|..+..+++. .++++++++. .++.|++. ..
T Consensus 57 ~Yhe~l~~~~l~~~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~-----Vi~~a~~~f~~~~~~~~~~~~~~d~ 131 (276)
T d1mjfa_ 57 SYHEPLVHPAMLAHPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDED-----VIMVSKDLIKIDNGLLEAMLNGKHE 131 (276)
T ss_dssp HHHHHHHHHHHHHSSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHH-----HHHHHHHHTCTTTTHHHHHHTTCCS
T ss_pred HHHHHhhcchhhcCCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHH-----HHHHHHHhhhhccchhhhhhccCCC
Confidence 4555554432223344679999999999999988876 4677777663 33444321 23
Q ss_pred CeEEEEcccccCCCCCCCeeEEEeccccccccccH----HHHHHHHHhcccCCeEEEEEe
Q 006905 258 PALIGVLAAERLPYPSRAFDMAHCSRCLIPWNQFG----GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 258 ~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~~~~----~~~L~Ei~RvLKPGG~lvis~ 313 (626)
.+.+...|+...--.+++||+|++-..- +..... ..+++.+.+.|+|||.+++..
T Consensus 132 rv~i~~~Da~~~l~~~~~yDvIi~D~~~-~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 132 KAKLTIGDGFEFIKNNRGFDVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp SEEEEESCHHHHHHHCCCEEEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CceEEEChHHHHHhccCCCCEEEEeCCC-CCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 3566666643321135789999974322 221111 578999999999999998854
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.57 E-value=3.7e-05 Score=72.83 Aligned_cols=109 Identities=11% Similarity=0.049 Sum_probs=68.0
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceeccccccCCCCCCccceeeeccccccCCCCC
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYPRTYDLIHADSVFSLYKDRC 549 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~yp~t~Dlih~~~~f~~~~~~c 549 (626)
-++|||+|||+|.+|.+++..+.- +|+.+|.++.+++.+.+..- .+.--+..+..+|+.||+|-++--|.......
T Consensus 49 Gk~VLDlGcGtG~l~i~a~~~ga~--~V~~vDid~~a~~~ar~N~~--~~~~~~~D~~~l~~~fD~Vi~NPPfg~~~~~~ 124 (197)
T d1ne2a_ 49 GRSVIDAGTGNGILACGSYLLGAE--SVTAFDIDPDAIETAKRNCG--GVNFMVADVSEISGKYDTWIMNPPFGSVVKHS 124 (197)
T ss_dssp TSEEEEETCTTCHHHHHHHHTTBS--EEEEEESCHHHHHHHHHHCT--TSEEEECCGGGCCCCEEEEEECCCC-------
T ss_pred CCEEEEeCCCCcHHHHHHHHcCCC--cccccccCHHHHHHHHHccc--cccEEEEehhhcCCcceEEEeCcccchhhhhc
Confidence 368999999999999888877653 68999999899998877542 22222456677889999999987775443333
Q ss_pred CHHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHh
Q 006905 550 ETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDA 586 (626)
Q Consensus 550 ~~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~ 586 (626)
++.. ++..+.+++.++..-......-+++.+..
T Consensus 125 D~~f----l~~a~~~~~~iy~ih~~~~~~~i~~~~~~ 157 (197)
T d1ne2a_ 125 DRAF----IDKAFETSMWIYSIGNAKARDFLRREFSA 157 (197)
T ss_dssp CHHH----HHHHHHHEEEEEEEEEGGGHHHHHHHHHH
T ss_pred hHHH----HHHHHhcCCeEEEehhhhHHHHHHHHhhc
Confidence 4332 23456666554443333334444444443
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=97.55 E-value=4.3e-05 Score=77.45 Aligned_cols=122 Identities=14% Similarity=0.117 Sum_probs=72.6
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----ccc----ceec-c---ccccCCCCCCccceee
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GLV----GTYT-N---WCEAMSTYPRTYDLIH 537 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gli----~~~~-~---~~e~~~~yp~t~Dlih 537 (626)
-++|||+.||+|+|+.+++..+. -.|+.+|.++..+..+.+. |+- .++. | |.+.+..-.+.||+|-
T Consensus 145 g~~VLdlf~~~G~~sl~aa~~ga--~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii 222 (317)
T d2b78a2 145 GKTVLNLFSYTAAFSVAAAMGGA--MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 222 (317)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTB--SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCceeecCCCCcHHHHHHHhCCC--ceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEE
Confidence 45799999999999988877655 1466778887777766543 331 1122 1 1111111237899998
Q ss_pred ecc-ccccCC-CCC----CHHHHHHHhhhhccCCcEEEEEcC------hHHHHHHHHHHHhCCCeeEE
Q 006905 538 ADS-VFSLYK-DRC----ETEDILLEMDRILRPEGGVIFRDD------VDELVKVKRIIDALKWQSQI 593 (626)
Q Consensus 538 ~~~-~f~~~~-~~c----~~~~~l~E~dRiLRPgG~~i~~d~------~~~~~~~~~~~~~l~w~~~~ 593 (626)
++- .|+..+ ..- +...++...-++|+|||.++++-. .+....|.+.+..-.+....
T Consensus 223 ~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~~~f~~~v~~a~~~~~~~~~~ 290 (317)
T d2b78a2 223 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYLD 290 (317)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCEEEE
T ss_pred EcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCHHHHHHHHHHHHHHcCCeEEE
Confidence 752 122111 111 234578888899999999999632 23345555555555555443
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.49 E-value=0.0003 Score=67.76 Aligned_cols=96 Identities=11% Similarity=0.022 Sum_probs=67.3
Q ss_pred CCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC--eEEEEcccc-cCC------CCCCCee
Q 006905 212 IRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVP--ALIGVLAAE-RLP------YPSRAFD 277 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~--~~~~v~d~~-~Lp------f~d~sFD 277 (626)
.++||+||+++|.-+..|++. .+++++.++.... .+.+...+.|.. +.+..+++. .++ ...++||
T Consensus 60 ~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~-~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD 138 (227)
T d1susa1 60 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYE-LGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 138 (227)
T ss_dssp CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHH-HHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBS
T ss_pred CCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHH-HHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCcee
Confidence 458999999999888888753 6888888874333 333344444543 556666632 222 1256899
Q ss_pred EEEeccccccccccHHHHHHHHHhcccCCeEEEEE
Q 006905 278 MAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 278 lV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
+|+.-. +......++..+.+.|+|||.+++.
T Consensus 139 ~iFiDa----~k~~y~~~~e~~~~ll~~gGiii~D 169 (227)
T d1susa1 139 FIFVDA----DKDNYLNYHKRLIDLVKVGGVIGYD 169 (227)
T ss_dssp EEEECS----CSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred EEEecc----chhhhHHHHHHHHhhcCCCcEEEEc
Confidence 999843 3444578899999999999999997
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.46 E-value=0.00038 Score=65.56 Aligned_cols=117 Identities=10% Similarity=0.092 Sum_probs=79.9
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc-cce-eccccccCCCCCCccceeeeccccccCCCC
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL-VGT-YTNWCEAMSTYPRTYDLIHADSVFSLYKDR 548 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl-i~~-~~~~~e~~~~yp~t~Dlih~~~~f~~~~~~ 548 (626)
.+|||+|||+|+++.+++.++. .+|+.+|.++.++..+.+.-- .+. ..-.+.....++..||+|-++-=|......
T Consensus 48 ~~vLDlg~GtG~l~i~a~~~g~--~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~nPP~~~~~~~ 125 (201)
T d1wy7a1 48 KVVADLGAGTGVLSYGALLLGA--KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQRKH 125 (201)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSSSTT
T ss_pred CEEEECcCcchHHHHHHHHcCC--CEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEcCcccccccc
Confidence 4799999999999988888875 278999999999998887532 111 112244556678899999998888766555
Q ss_pred CCHHHHHHHhhhhccCCcEEEE--EcChHHHHHHHHHHHhCCCeeEE
Q 006905 549 CETEDILLEMDRILRPEGGVIF--RDDVDELVKVKRIIDALKWQSQI 593 (626)
Q Consensus 549 c~~~~~l~E~dRiLRPgG~~i~--~d~~~~~~~~~~~~~~l~w~~~~ 593 (626)
.+++.+.. .+.+++.+.. ....+...-++.+.....|.+..
T Consensus 126 ~d~~~l~~----~~~~~~~v~~ih~~~~~~~~~i~~~~~~~g~~i~~ 168 (201)
T d1wy7a1 126 ADRPFLLK----AFEISDVVYSIHLAKPEVRRFIEKFSWEHGFVVTH 168 (201)
T ss_dssp TTHHHHHH----HHHHCSEEEEEEECCHHHHHHHHHHHHHTTEEEEE
T ss_pred ccHHHHHH----HHhhcccchhcccchHHHHHHHHHHHhhcCceEEE
Confidence 66554432 3344554433 34445556677888888887654
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=97.45 E-value=0.00011 Score=74.21 Aligned_cols=116 Identities=14% Similarity=0.101 Sum_probs=72.0
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHH-----cCCCeEEEEcccc
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALE-----RGVPALIGVLAAE 267 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~e-----rg~~~~~~v~d~~ 267 (626)
|-+.+...........++||.||.|.|..+..+++. .++++++++..+..+...+... ....+.+...|+.
T Consensus 63 Yhe~l~h~~l~~~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~ 142 (312)
T d1uira_ 63 YHETLVHPAMLTHPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDAR 142 (312)
T ss_dssp HHHHHHHHHHHHSSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHH
T ss_pred HHHHHhhhhhhhCCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHH
Confidence 444454432222344679999999999999988765 5788888774333222222111 1234666666743
Q ss_pred c-CCCCCCCeeEEEecccccccc-----ccH--HHHHHHHHhcccCCeEEEEEe
Q 006905 268 R-LPYPSRAFDMAHCSRCLIPWN-----QFG--GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 268 ~-Lpf~d~sFDlV~~~~~l~h~~-----~~~--~~~L~Ei~RvLKPGG~lvis~ 313 (626)
. +.-.++.||+|++-.. .++. ... ..+++.+.+.|+|||.+++..
T Consensus 143 ~~l~~~~~~yDvIi~D~~-dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 143 AYLERTEERYDVVIIDLT-DPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp HHHHHCCCCEEEEEEECC-CCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHhhhcCCcccEEEEeCC-CcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 3 2234568999996332 1121 111 579999999999999998854
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.40 E-value=4.5e-05 Score=77.40 Aligned_cols=122 Identities=10% Similarity=0.015 Sum_probs=76.2
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cccceecccccc-------CCCCCCccceeee
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GLVGTYTNWCEA-------MSTYPRTYDLIHA 538 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gli~~~~~~~e~-------~~~yp~t~Dlih~ 538 (626)
-.+|||++||+|+|+.+++..+.- .|+.+|.++..++.+.+. |+-...+-.+.+ +..-.++||+|-+
T Consensus 146 g~~VLDl~~g~G~~si~~a~~ga~--~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~ 223 (324)
T d2as0a2 146 GDRVLDVFTYTGGFAIHAAIAGAD--EVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 223 (324)
T ss_dssp TCEEEETTCTTTHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeeecccCcccchhhhhhhcCCc--EEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhc
Confidence 347999999999999999888752 688899998898877553 332212211221 1112379999998
Q ss_pred ccccccCCCC------CCHHHHHHHhhhhccCCcEEEEEcC------hHHHHHHHHHHHhCCCeeEE
Q 006905 539 DSVFSLYKDR------CETEDILLEMDRILRPEGGVIFRDD------VDELVKVKRIIDALKWQSQI 593 (626)
Q Consensus 539 ~~~f~~~~~~------c~~~~~l~E~dRiLRPgG~~i~~d~------~~~~~~~~~~~~~l~w~~~~ 593 (626)
+--....... .+...++...-++|||||.+++... .+..+.|.+.+....=..++
T Consensus 224 DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f~~~v~~a~~~~gr~~~~ 290 (324)
T d2as0a2 224 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKM 290 (324)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTEEEEE
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHHHHHHHHHHHHcCCeEEE
Confidence 5432211111 1234588888999999999999642 23345555544444333333
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.34 E-value=4.3e-05 Score=74.39 Aligned_cols=97 Identities=10% Similarity=0.148 Sum_probs=63.8
Q ss_pred CCceeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHHHhc-ccceeccccccCCCCCCccceeeecccccc
Q 006905 468 GRYRNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIYERG-LVGTYTNWCEAMSTYPRTYDLIHADSVFSL 544 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~~rg-li~~~~~~~e~~~~yp~t~Dlih~~~~f~~ 544 (626)
...++|+|+|||.|.++.+|+++ ++ .++-.|.+ .+++.+.+.. +..+-+|. |.+.|. .|.+...+++..
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l---~~~v~Dlp-~vi~~~~~~~r~~~~~~d~---~~~~P~-ad~~~l~~vlh~ 151 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKYPTI---KGINFDLP-HVIEDAPSYPGVEHVGGDM---FVSIPK-ADAVFMKWICHD 151 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHCTTS---EEEEEECT-TTTTTCCCCTTEEEEECCT---TTCCCC-CSCEECSSSSTT
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCC---eEEEcccH-HhhhhcccCCceEEecccc---cccCCC-cceEEEEEEeec
Confidence 56899999999999999999875 23 34444554 3333222222 12234443 345673 355555667776
Q ss_pred CCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 545 YKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 545 ~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
+.+. +...+|.++.+.|+|||.++|-|.
T Consensus 152 ~~d~-~~~~iL~~~~~al~pgg~~li~d~ 179 (243)
T d1kyza2 152 WSDE-HCLKFLKNCYEALPDNGKVIVAEC 179 (243)
T ss_dssp SCHH-HHHHHHHHHHHHCCSSSCEEEEEC
T ss_pred CCHH-HHHHHHHHHHHhcCCCceEEEEEE
Confidence 6542 445799999999999999999753
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.30 E-value=0.001 Score=66.14 Aligned_cols=118 Identities=15% Similarity=0.070 Sum_probs=74.4
Q ss_pred HHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHH----HcCCCeEEEEcccc
Q 006905 196 AYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFAL----ERGVPALIGVLAAE 267 (626)
Q Consensus 196 ~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~----erg~~~~~~v~d~~ 267 (626)
.|-+.+...........++||=||-|.|..+..+++. .++.+++++..+..+..-+.. .......+...|..
T Consensus 65 ~Yhe~l~h~~~~~~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~ 144 (290)
T d1xj5a_ 65 AYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGV 144 (290)
T ss_dssp HHHHHHHHHHHTTSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHH
T ss_pred HHHHHHhhHHHhhCCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHH
Confidence 3444444443333445679999999999999999886 478888877433322221111 11344666666633
Q ss_pred c-C-CCCCCCeeEEEeccccccccc--cH--HHHHHHHHhcccCCeEEEEEeC
Q 006905 268 R-L-PYPSRAFDMAHCSRCLIPWNQ--FG--GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 268 ~-L-pf~d~sFDlV~~~~~l~h~~~--~~--~~~L~Ei~RvLKPGG~lvis~p 314 (626)
. + ...+++||+|+.-.. .+... .. ..+++.+.+.|+|||.+++...
T Consensus 145 ~~l~~~~~~~yDvIi~D~~-dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~ 196 (290)
T d1xj5a_ 145 AFLKNAAEGSYDAVIVDSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQAE 196 (290)
T ss_dssp HHHHTSCTTCEEEEEECCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECC
T ss_pred HHHhhccccCccEEEEcCC-CCCCcchhhCCHHHHHHHHHhcCCCcEEEEecC
Confidence 2 2 234568999997332 12211 11 6899999999999999999754
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.30 E-value=1.3e-05 Score=72.50 Aligned_cols=96 Identities=16% Similarity=0.160 Sum_probs=62.6
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc---cceeccccccCCCC-CCccceeeeccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL---VGTYTNWCEAMSTY-PRTYDLIHADSV 541 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~~~~e~~~~y-p~t~Dlih~~~~ 541 (626)
-.+|||++||+|++|...+.++.- +|+.+|.+++++..+.+. |+ +.+++.=+..+... ...||+|.++-=
T Consensus 15 g~~vlDl~~GtG~~~iea~~rga~--~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP 92 (152)
T d2esra1 15 GGRVLDLFAGSGGLAIEAVSRGMS--AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 92 (152)
T ss_dssp SCEEEEETCTTCHHHHHHHHTTCC--EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCeEEEcCCccCHHHHHHHHhCcc--eeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence 457999999999999877888763 788999987777765543 33 23344222222223 388999988543
Q ss_pred cccCCCCCCHHHHHHHh--hhhccCCcEEEEE
Q 006905 542 FSLYKDRCETEDILLEM--DRILRPEGGVIFR 571 (626)
Q Consensus 542 f~~~~~~c~~~~~l~E~--dRiLRPgG~~i~~ 571 (626)
|... ..+.+|..+ .++|+|||.+|+.
T Consensus 93 y~~~----~~~~~l~~i~~~~~L~~~g~iiiE 120 (152)
T d2esra1 93 YAKE----TIVATIEALAAKNLLSEQVMVVCE 120 (152)
T ss_dssp SHHH----HHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred hccc----hHHHHHHHHHHCCCcCCCeEEEEE
Confidence 3211 112333333 4799999999985
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.29 E-value=0.00048 Score=63.86 Aligned_cols=104 Identities=18% Similarity=0.191 Sum_probs=66.7
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCC-
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLP- 270 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lp- 270 (626)
-+.+|.+...+- .++.+||||||+.|.|+.++.+. .++++|+.+.. .-....+..++.....
T Consensus 9 KL~EI~~k~~l~-k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~-----------~i~~~~~~~~d~~~~~~ 76 (180)
T d1ej0a_ 9 KLDEIQQSDKLF-KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD-----------PIVGVDFLQGDFRDELV 76 (180)
T ss_dssp HHHHHHHHHCCC-CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC-----------CCTTEEEEESCTTSHHH
T ss_pred HHHHHHHHhCcc-CCCCeEEEEeccCCcceEEEEeeccccceEEEeeccccc-----------ccCCceEeecccccchh
Confidence 344555555433 23558999999999999998874 57888886632 1122445555432211
Q ss_pred -------CCCCCeeEEEeccccccccccH-----------HHHHHHHHhcccCCeEEEEEe
Q 006905 271 -------YPSRAFDMAHCSRCLIPWNQFG-----------GIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 271 -------f~d~sFDlV~~~~~l~h~~~~~-----------~~~L~Ei~RvLKPGG~lvis~ 313 (626)
.....||+|+|-.+.. ..... ...+.-+.++||+||.|++-.
T Consensus 77 ~~~~~~~~~~~~~DlVlSD~ap~-~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~ 136 (180)
T d1ej0a_ 77 MKALLERVGDSKVQVVMSDMAPN-MSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV 136 (180)
T ss_dssp HHHHHHHHTTCCEEEEEECCCCC-CCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhhhhccCcceeEEEecccch-hcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEE
Confidence 2356799999976652 21111 245667789999999999964
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.28 E-value=0.00013 Score=68.42 Aligned_cols=103 Identities=19% Similarity=0.238 Sum_probs=69.4
Q ss_pred CCceeEEeccCchhh----HhhhhhCC---CeEEEEeccCccCcccHHHHHHhcccc-----------------------
Q 006905 468 GRYRNILDMNAHLGG----FAAALIDF---PVWVMNVVPAEAKINTLGVIYERGLVG----------------------- 517 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~----faa~l~~~---~v~~mnv~~~~~~~~~l~~~~~rgli~----------------------- 517 (626)
++--.|+++|||+|- +|..|.+. .-|-..|+++|.++..|+.|.+ |..+
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~-g~y~~~~~~~~~~~~~~~yf~~~~~~~ 101 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARS-GIYRLSELKTLSPQQLQRYFMRGTGPH 101 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHH-TEEEGGGGTTSCHHHHHHHEEECCTTS
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhc-CcccHHHHhhhhHHHHhhceeecCCCc
Confidence 334568999999997 45444431 1133579999999888887752 2211
Q ss_pred ----------------eeccccccCCCCC-CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC
Q 006905 518 ----------------TYTNWCEAMSTYP-RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDD 573 (626)
Q Consensus 518 ----------------~~~~~~e~~~~yp-~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~ 573 (626)
..|+..+. ...| +.||+|-|-.||.+.... ....+|..+.+.|+|||++++...
T Consensus 102 ~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~fDvI~CRNVLiYf~~~-~~~~vl~~l~~~L~pGG~L~lG~s 172 (193)
T d1af7a2 102 EGLVRVRQELANYVEFSSVNLLEK-QYNVPGPFDAIFCRNVMIYFDKT-TQEDILRRFVPLLKPDGLLFAGHS 172 (193)
T ss_dssp CSEEEECHHHHTTEEEEECCTTCS-SCCCCCCEEEEEECSSGGGSCHH-HHHHHHHHHGGGEEEEEEEEECTT
T ss_pred cceeehHHHHHHHHHHhhhhcccc-ccCCCCCccEEEeehhHHhcCHH-HHHHHHHHHHHHhCCCcEEEEecC
Confidence 00111111 1123 889999999999987742 446799999999999999999754
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.24 E-value=5.7e-05 Score=72.75 Aligned_cols=91 Identities=19% Similarity=0.191 Sum_probs=60.0
Q ss_pred ceeEEeccCchhhHhhhhhCC----Ce-EEEEeccCccCcccHHHHHHh---------cc--cceeccccccCCCCC--C
Q 006905 470 YRNILDMNAHLGGFAAALIDF----PV-WVMNVVPAEAKINTLGVIYER---------GL--VGTYTNWCEAMSTYP--R 531 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~----~v-~~mnv~~~~~~~~~l~~~~~r---------gl--i~~~~~~~e~~~~yp--~ 531 (626)
-.+|||+|||+|-++|.|++. ++ -.-.|+.+|..+..+..+.++ ++ +-+.+ ......+| .
T Consensus 81 g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~--~d~~~~~~~~~ 158 (223)
T d1r18a_ 81 GARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE--GDGRKGYPPNA 158 (223)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE--SCGGGCCGGGC
T ss_pred CCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEe--ccccccccccc
Confidence 457999999999999888653 21 001366778777788877654 11 22333 12233455 7
Q ss_pred ccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 532 TYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 532 t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
.||.|++........ ..+-+.|+|||.+|+-
T Consensus 159 ~fD~Iiv~~a~~~~p---------~~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 159 PYNAIHVGAAAPDTP---------TELINQLASGGRLIVP 189 (223)
T ss_dssp SEEEEEECSCBSSCC---------HHHHHTEEEEEEEEEE
T ss_pred ceeeEEEEeechhch---------HHHHHhcCCCcEEEEE
Confidence 899999976665333 2445799999999884
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.22 E-value=0.00061 Score=65.14 Aligned_cols=128 Identities=18% Similarity=0.145 Sum_probs=83.0
Q ss_pred CceeEEeccCchhhHhhhhhCC---CeEEEEeccCccCcccHHHHHHh----cc---cceec-cccccCCC-----CCCc
Q 006905 469 RYRNILDMNAHLGGFAAALIDF---PVWVMNVVPAEAKINTLGVIYER----GL---VGTYT-NWCEAMST-----YPRT 532 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~---~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~-~~~e~~~~-----yp~t 532 (626)
.-++||++|+|+|--+.+|++- +- .|+.+|..+....++.+. |+ |...+ +-.+.+.. .+.+
T Consensus 59 ~~k~vLEiGt~~GyStl~~a~al~~~g---~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~ 135 (219)
T d2avda1 59 QAKKALDLGTFTGYSALALALALPADG---RVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGT 135 (219)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTC
T ss_pred CCCeEEEEechhhHHHHHHHHhCCCCc---eEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCC
Confidence 3789999999999988888753 22 466666666665554432 44 33333 22222222 2579
Q ss_pred cceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh---------------HHHHH-HHHHHHhCCCeeEEeec
Q 006905 533 YDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV---------------DELVK-VKRIIDALKWQSQIVDH 596 (626)
Q Consensus 533 ~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~---------------~~~~~-~~~~~~~l~w~~~~~~~ 596 (626)
||+|..+. ++-.....+.++-+.|||||.+|+-+-. ..+.+ .+.|.+.-+|...+.-
T Consensus 136 fD~ifiD~------dk~~y~~~~~~~~~lL~~GGvii~Dn~l~~G~v~~~~~~d~~~~~ir~~~~~i~~d~r~~~~llP- 208 (219)
T d2avda1 136 FDVAVVDA------DKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLP- 208 (219)
T ss_dssp EEEEEECS------CSTTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEEC-
T ss_pred ccEEEEeC------CHHHHHHHHHHHHHHhcCCcEEEEeCCcccCcccCcccCCHHHHHHHHHHHHHHhCCCEEEEEee-
Confidence 99999843 2335667788889999999999996431 11222 3445777889888763
Q ss_pred CCCCCCcceEEEEEe
Q 006905 597 EDGPLEREKLLFAVK 611 (626)
Q Consensus 597 e~~~~~~e~~l~~~K 611 (626)
..+.++||+|
T Consensus 209 -----igdGl~ia~K 218 (219)
T d2avda1 209 -----LGDGLTLAFK 218 (219)
T ss_dssp -----STTCEEEEEE
T ss_pred -----cCCeeEEEEe
Confidence 2356999988
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.20 E-value=0.0018 Score=59.68 Aligned_cols=99 Identities=13% Similarity=0.054 Sum_probs=62.3
Q ss_pred CCEEEEeCCCCchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCC---CeEEEEccc---ccCCCCCCCeeEEEec
Q 006905 212 IRTAIDTGCGVASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGV---PALIGVLAA---ERLPYPSRAFDMAHCS 282 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~---~~~~~v~d~---~~Lpf~d~sFDlV~~~ 282 (626)
+.++||+-||+|+++...+.+ .++.+|.+...+. ...+..+..+. ...+...+. .........||+|++-
T Consensus 44 ~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~-~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD 122 (183)
T d2ifta1 44 QSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVAN-QLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 122 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHH-HHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred cceEeecccCccceeeeeeeecceeeEEeecccchhh-hHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence 448999999999999999998 4677777553222 22222333333 233333332 2223345579999997
Q ss_pred cccccccccH-HHHHHHHH--hcccCCeEEEEEeC
Q 006905 283 RCLIPWNQFG-GIYLIEVD--RVLRPGGYWILSGP 314 (626)
Q Consensus 283 ~~l~h~~~~~-~~~L~Ei~--RvLKPGG~lvis~p 314 (626)
.. +.... ...+..+. .+|+++|.+++..+
T Consensus 123 PP---Y~~~~~~~~l~~l~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 123 PP---FHFNLAEQAISLLCENNWLKPNALIYVETE 154 (183)
T ss_dssp CC---SSSCHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred hh---HhhhhHHHHHHHHHHhCCcCCCcEEEEEec
Confidence 74 33333 55666664 47999999999753
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.18 E-value=0.0009 Score=66.80 Aligned_cols=104 Identities=13% Similarity=0.049 Sum_probs=67.3
Q ss_pred CCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHH----cCCCeEEEEccccc-CCCCCCCeeEEE
Q 006905 210 GSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALE----RGVPALIGVLAAER-LPYPSRAFDMAH 280 (626)
Q Consensus 210 ~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~e----rg~~~~~~v~d~~~-Lpf~d~sFDlV~ 280 (626)
...++||-||.|.|..+..+++. .++++++++..+..+..-+... ......+...|+.. +.-.++.||+|+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 34679999999999999999875 4788888774443222211111 12345666666332 333457899999
Q ss_pred eccccccccc-----cHHHHHHHHHhcccCCeEEEEEeC
Q 006905 281 CSRCLIPWNQ-----FGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 281 ~~~~l~h~~~-----~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+-..- +... ....+++.+.+.|+|||.++....
T Consensus 168 ~D~~d-p~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~ 205 (295)
T d1inla_ 168 IDSTD-PTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 205 (295)
T ss_dssp EEC-----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EcCCC-CCcCchhhhccHHHHHHHHhhcCCCcEEEEecC
Confidence 74321 2211 116899999999999999998653
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.13 E-value=0.00082 Score=66.38 Aligned_cols=118 Identities=8% Similarity=0.092 Sum_probs=73.4
Q ss_pred HHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHH----cCCCeEEEEcccc
Q 006905 196 AYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALE----RGVPALIGVLAAE 267 (626)
Q Consensus 196 ~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~e----rg~~~~~~v~d~~ 267 (626)
.|-+.+....-......++||-||.|.|..+..+++. .++++++++..+..+..-+... ....+.+...|+.
T Consensus 60 ~Yhe~l~h~~l~~~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~ 139 (274)
T d1iy9a_ 60 VYHEMVAHVPLFTHPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGF 139 (274)
T ss_dssp HHHHHHHHHHHHHSSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSH
T ss_pred hchhhhccchhhccCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHH
Confidence 3444443332223344679999999999999999875 5788888774333222222111 1234566666643
Q ss_pred c-CCCCCCCeeEEEeccccccccc----cHHHHHHHHHhcccCCeEEEEEeC
Q 006905 268 R-LPYPSRAFDMAHCSRCLIPWNQ----FGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 268 ~-Lpf~d~sFDlV~~~~~l~h~~~----~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
. +.-.+++||+|+.-..- +... ....+++.+.+.|+|||.++....
T Consensus 140 ~~l~~~~~~yDvIi~D~~~-p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~ 190 (274)
T d1iy9a_ 140 MHIAKSENQYDVIMVDSTE-PVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (274)
T ss_dssp HHHHTCCSCEEEEEESCSS-CCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred HHHhhcCCCCCEEEEcCCC-CCCcchhhccHHHHHHHHhhcCCCceEEEecC
Confidence 3 23346789999974321 2111 126899999999999999998653
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.11 E-value=0.002 Score=62.32 Aligned_cols=158 Identities=13% Similarity=0.086 Sum_probs=98.5
Q ss_pred hhhHHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhh--CCCeEEEEeccCccCc---ccHH-HHHHhcc--c
Q 006905 445 QNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALI--DFPVWVMNVVPAEAKI---NTLG-VIYERGL--V 516 (626)
Q Consensus 445 ~d~~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~--~~~v~~mnv~~~~~~~---~~l~-~~~~rgl--i 516 (626)
...+.|.+|+-.-..++..+.. ....+|+|+|+|-|-=|--|+ .... +|+-+|... +.|+ ++.+=|| +
T Consensus 47 ~~~~i~~rHi~DSl~~~~~~~~-~~~~~ilDiGSGaGfPGi~laI~~p~~---~v~Lves~~KK~~FL~~v~~~L~L~n~ 122 (239)
T d1xdza_ 47 EKKEVYLKHFYDSITAAFYVDF-NQVNTICDVGAGAGFPSLPIKICFPHL---HVTIVDSLNKRITFLEKLSEALQLENT 122 (239)
T ss_dssp SHHHHHHHTHHHHHGGGGTSCG-GGCCEEEEECSSSCTTHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHTCSSE
T ss_pred CHHHHHHHhccchhhhhhhhcc-cCCCeEEeecCCCchHHHHHHHhCCCc---cceeecchHHHHHHHHHHHHHhCCCCc
Confidence 3458899998876555554443 346789999999884444443 3333 444444432 2333 3344466 3
Q ss_pred ceeccccccCCC---CCCccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh---HHHHHHHHHHHhCCCe
Q 006905 517 GTYTNWCEAMST---YPRTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV---DELVKVKRIIDALKWQ 590 (626)
Q Consensus 517 ~~~~~~~e~~~~---yp~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~---~~~~~~~~~~~~l~w~ 590 (626)
-++|+-.|.+.. +...||+|-| .+-..+..++.-....|+|||.+++-... +.+...++..+.+.++
T Consensus 123 ~i~~~R~E~~~~~~~~~~~~D~v~s-------RAva~l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~~~~~ 195 (239)
T d1xdza_ 123 TFCHDRAETFGQRKDVRESYDIVTA-------RAVARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGE 195 (239)
T ss_dssp EEEESCHHHHTTCTTTTTCEEEEEE-------ECCSCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEE
T ss_pred EEEeehhhhccccccccccceEEEE-------hhhhCHHHHHHHHhhhcccCCEEEEECCCChHHHHHHHHHHHHHcCCE
Confidence 456666666553 3478999998 33456778888889999999999997544 4566667777888887
Q ss_pred eEEee-cC-CCCCCcceEEEEEecc
Q 006905 591 SQIVD-HE-DGPLEREKLLFAVKLY 613 (626)
Q Consensus 591 ~~~~~-~e-~~~~~~e~~l~~~K~~ 613 (626)
..-+. -+ ......-.+++.+|.-
T Consensus 196 ~~~v~~~~lp~~~~~r~lv~i~K~~ 220 (239)
T d1xdza_ 196 LENIHSFKLPIEESDRNIMVIRKIK 220 (239)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEECS
T ss_pred EEEEEEEeCCCCCCCEEEEEEEECC
Confidence 65322 11 1121234677777743
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=97.09 E-value=7.1e-05 Score=68.93 Aligned_cols=94 Identities=13% Similarity=0.160 Sum_probs=61.7
Q ss_pred eEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cccc-eeccccccCCC---CC-Cccceeeecccc
Q 006905 472 NILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GLVG-TYTNWCEAMST---YP-RTYDLIHADSVF 542 (626)
Q Consensus 472 ~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gli~-~~~~~~e~~~~---yp-~t~Dlih~~~~f 542 (626)
+|||++||+|++|.+.++++. .|+.+|.++.+++.+.+. |+-. +...-+..|.. .+ ..||+|-++==|
T Consensus 44 ~vLDl~~G~G~~~i~a~~~ga---~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DPPY 120 (171)
T d1ws6a1 44 RFLDPFAGSGAVGLEAASEGW---EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPY 120 (171)
T ss_dssp EEEEETCSSCHHHHHHHHTTC---EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCT
T ss_pred eEEEeccccchhhhhhhhccc---hhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEcccc
Confidence 699999999999999999987 566789998888866433 2211 22222222221 22 689999875333
Q ss_pred ccCCCCCCHHHHHHHh--hhhccCCcEEEEEcC
Q 006905 543 SLYKDRCETEDILLEM--DRILRPEGGVIFRDD 573 (626)
Q Consensus 543 ~~~~~~c~~~~~l~E~--dRiLRPgG~~i~~d~ 573 (626)
.. ++..++.++ ..+|+|||.+|+..+
T Consensus 121 ~~-----~~~~~l~~l~~~~ll~~~g~ivie~~ 148 (171)
T d1ws6a1 121 AM-----DLAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp TS-----CTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred cc-----CHHHHHHHHHHcCCcCCCeEEEEEec
Confidence 21 234444444 368999999998643
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.08 E-value=0.00095 Score=66.29 Aligned_cols=116 Identities=13% Similarity=0.084 Sum_probs=70.7
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHH----HcCCCeEEEEccccc
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFAL----ERGVPALIGVLAAER 268 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~----erg~~~~~~v~d~~~ 268 (626)
|-+.+....-......++||-||.|.|..+..+++. .++++++++..+..+..-+.. .......+...|+..
T Consensus 64 Yhe~l~h~~l~~~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~ 143 (285)
T d2o07a1 64 YQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFE 143 (285)
T ss_dssp HHHHHHHHHHTTSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHH
T ss_pred HHHHhccHhhhhCcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHH
Confidence 434443332233344679999999999999999885 567788877433322221111 112456666667332
Q ss_pred -CCCCCCCeeEEEecccccccccc----HHHHHHHHHhcccCCeEEEEEe
Q 006905 269 -LPYPSRAFDMAHCSRCLIPWNQF----GGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 269 -Lpf~d~sFDlV~~~~~l~h~~~~----~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+.-..++||+|++-. ..+.... ...+++.+.+.|+|||.+++..
T Consensus 144 ~l~~~~~~yDvIi~D~-~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 192 (285)
T d2o07a1 144 FMKQNQDAFDVIITDS-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 192 (285)
T ss_dssp HHHTCSSCEEEEEEEC-C-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred HHhcCCCCCCEEEEcC-CCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence 223456899999843 2122111 1478999999999999999964
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.06 E-value=0.00064 Score=68.36 Aligned_cols=112 Identities=13% Similarity=0.085 Sum_probs=69.0
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHc---------CCCeEEEE
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALER---------GVPALIGV 263 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~er---------g~~~~~~v 263 (626)
|-+.|....-......++||-||.|.|..+..+++. .++.+++++. .++.+++. ...+.+..
T Consensus 92 YhE~l~h~pl~~~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~-----Vv~~a~~~~~~~~~~~~dprv~i~i 166 (312)
T d2b2ca1 92 YQEMLAHLPMFAHPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEM-----VIDVAKKFLPGMSCGFSHPKLDLFC 166 (312)
T ss_dssp HHHHHHHHHHHHSSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHH-----HHHHHHHHCTTTSGGGGCTTEEEEC
T ss_pred HHHHhhhHHHhcCCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHH-----HHHHHHhhchhhccccCCCCeEEEE
Confidence 444444332222344679999999999999999885 4778888663 34444432 12355555
Q ss_pred ccccc-CCCCCCCeeEEEeccccccccc--c--HHHHHHHHHhcccCCeEEEEEeC
Q 006905 264 LAAER-LPYPSRAFDMAHCSRCLIPWNQ--F--GGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 264 ~d~~~-Lpf~d~sFDlV~~~~~l~h~~~--~--~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.|+.. +.-..+.||+|++-..- +... . ...+++.+.+.|+|||.++....
T Consensus 167 ~Da~~~l~~~~~~yDvII~D~~d-p~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~ 221 (312)
T d2b2ca1 167 GDGFEFLKNHKNEFDVIITDSSD-PVGPAESLFGQSYYELLRDALKEDGILSSQGE 221 (312)
T ss_dssp SCHHHHHHHCTTCEEEEEECCC--------------HHHHHHHHEEEEEEEEEECC
T ss_pred chHHHHHHhCCCCCCEEEEcCCC-CCCcchhhhhHHHHHHHHhhcCCCcEEEEecC
Confidence 55322 22245789999974322 2111 0 15789999999999999999753
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.97 E-value=0.00011 Score=70.32 Aligned_cols=88 Identities=20% Similarity=0.244 Sum_probs=57.6
Q ss_pred ceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHh----cc--cceeccccccCCCCC--Cccceeeecc
Q 006905 470 YRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYER----GL--VGTYTNWCEAMSTYP--RTYDLIHADS 540 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~~~~e~~~~yp--~t~Dlih~~~ 540 (626)
--+|||+|||+|..+|.|+.. +- .|+.++..+..++.+.++ |+ +-+.+ ...+..+| ..||.|++..
T Consensus 79 g~~VLeIGsGsGY~taila~l~g~---~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~--gd~~~g~~~~~pfD~Iiv~~ 153 (215)
T d1jg1a_ 79 GMNILEVGTGSGWNAALISEIVKT---DVYTIERIPELVEFAKRNLERAGVKNVHVIL--GDGSKGFPPKAPYDVIIVTA 153 (215)
T ss_dssp TCCEEEECCTTSHHHHHHHHHHCS---CEEEEESCHHHHHHHHHHHHHTTCCSEEEEE--SCGGGCCGGGCCEEEEEECS
T ss_pred cceEEEecCCCChhHHHHHHhhCc---eeEEEeccHHHHHHHHHHHHHcCCceeEEEE--CccccCCcccCcceeEEeec
Confidence 458999999999999988754 31 255666665666655543 33 22333 23344566 8899999976
Q ss_pred ccccCCCCCCHHHHHHHhhhhccCCcEEEEE
Q 006905 541 VFSLYKDRCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 541 ~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
...... .-|. .-|+|||.+|+-
T Consensus 154 a~~~ip------~~l~---~qL~~gGrLv~p 175 (215)
T d1jg1a_ 154 GAPKIP------EPLI---EQLKIGGKLIIP 175 (215)
T ss_dssp BBSSCC------HHHH---HTEEEEEEEEEE
T ss_pred ccccCC------HHHH---HhcCCCCEEEEE
Confidence 665433 2233 359999999873
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=96.97 E-value=0.0027 Score=64.20 Aligned_cols=128 Identities=14% Similarity=0.164 Sum_probs=79.2
Q ss_pred CCceecCCCCCCCCCcHH---HHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHH
Q 006905 178 GDRFRFPGGGTMFPNGAD---AYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFA 252 (626)
Q Consensus 178 ge~~~Fp~ggt~F~~ga~---~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A 252 (626)
|-.+.++ .++.|..... ..++.+.+++... ...+|||+-||+|.|+..|++. .|++++.++..+.. +.+.+
T Consensus 179 g~~~~i~-p~sFfQ~N~~~~e~l~~~v~~~~~~~--~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~-A~~na 254 (358)
T d1uwva2 179 GLRLTFS-PRDFIQVNAGVNQKMVARALEWLDVQ--PEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEK-GQQNA 254 (358)
T ss_dssp TEEEECC-SSSCCCSBHHHHHHHHHHHHHHHTCC--TTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHH-HHHHH
T ss_pred CEEEEEC-CchhhccchhhhhHHHHHHHHhhccC--CCceEEEecccccccchhccccccEEEeccCcHHHHHH-HHHhH
Confidence 3334442 2344444433 3334444555333 3458999999999999999986 79999998855443 34455
Q ss_pred HHcCCC-eEEEEccccc-CC---CCCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 253 LERGVP-ALIGVLAAER-LP---YPSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 253 ~erg~~-~~~~v~d~~~-Lp---f~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
..+++. ..+..++... ++ .....||+|+....... ....+..+.+ ++|.-.+++|..
T Consensus 255 ~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G----~~~~~~~l~~-~~~~~ivYVSCn 316 (358)
T d1uwva2 255 RLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAG----AAGVMQQIIK-LEPIRIVYVSCN 316 (358)
T ss_dssp HHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTC----CHHHHHHHHH-HCCSEEEEEESC
T ss_pred HhcccccceeeecchhhhhhhhhhhhccCceEEeCCCCcc----HHHHHHHHHH-cCCCEEEEEeCC
Confidence 566664 5566666433 32 23567999988664422 1346666665 478888888854
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=96.97 E-value=0.0021 Score=61.88 Aligned_cols=82 Identities=13% Similarity=0.115 Sum_probs=56.8
Q ss_pred HHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHc---CCCeEEEEcccccCC
Q 006905 196 AYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALER---GVPALIGVLAAERLP 270 (626)
Q Consensus 196 ~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~er---g~~~~~~v~d~~~Lp 270 (626)
..++.|.+.+.... +.+|||||||+|.++..|++. .++++++++. .++..+++ ...+.+..+|+..++
T Consensus 8 ~i~~~iv~~~~~~~--~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~-----l~~~l~~~~~~~~n~~i~~~D~l~~~ 80 (235)
T d1qama_ 8 HNIDKIMTNIRLNE--HDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHK-----LCKTTENKLVDHDNFQVLNKDILQFK 80 (235)
T ss_dssp HHHHHHHTTCCCCT--TCEEEEECCTTSHHHHHHHHHSSEEEEECSCHH-----HHHHHHHHTTTCCSEEEECCCGGGCC
T ss_pred HHHHHHHHhcCCCC--CCeEEEECCCchHHHHHHHhCcCceEEEeeccc-----hHHHHHHHhhcccchhhhhhhhhhcc
Confidence 35556666665444 458999999999999999986 6888888663 33344333 234678888888887
Q ss_pred CCCCCeeEEEeccc
Q 006905 271 YPSRAFDMAHCSRC 284 (626)
Q Consensus 271 f~d~sFDlV~~~~~ 284 (626)
++......|+++.-
T Consensus 81 ~~~~~~~~vv~NLP 94 (235)
T d1qama_ 81 FPKNQSYKIFGNIP 94 (235)
T ss_dssp CCSSCCCEEEEECC
T ss_pred ccccccceeeeeeh
Confidence 76655556777663
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=96.93 E-value=0.0021 Score=60.71 Aligned_cols=94 Identities=14% Similarity=0.004 Sum_probs=62.1
Q ss_pred CCEEEEeCCCCchHHHHHhh----CCcEEEeCCccchHHHHHHHHHHcCCC-eEEEEcccccCCCCCCCeeEEEeccccc
Q 006905 212 IRTAIDTGCGVASWGAYLLS----RNIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAERLPYPSRAFDMAHCSRCLI 286 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~----~~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~~Lpf~d~sFDlV~~~~~l~ 286 (626)
..++||+|+|.|.-|.-|+- ..++.+|-...-.. ...+.+.+-++. +.+....++.+. .+.+||+|+|.. +
T Consensus 66 ~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~-FL~~~~~~L~L~nv~v~~~R~E~~~-~~~~fD~V~sRA-~- 141 (207)
T d1jsxa_ 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVR-FLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRA-F- 141 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHH-HHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSC-S-
T ss_pred CCceeeeeccCCceeeehhhhcccceEEEEecchHHHH-HHHHHHHHcCCcceeeeccchhhhc-cccccceehhhh-h-
Confidence 34899999999955554443 36777777553221 222334455664 445544566654 356899998844 3
Q ss_pred cccccHHHHHHHHHhcccCCeEEEEE
Q 006905 287 PWNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 287 h~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
.....++.-+...+++||.+++-
T Consensus 142 ---~~~~~ll~~~~~~l~~~g~~~~~ 164 (207)
T d1jsxa_ 142 ---ASLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp ---SSHHHHHHHHTTSEEEEEEEEEE
T ss_pred ---cCHHHHHHHHHHhcCCCcEEEEE
Confidence 23577888899999999999986
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=96.88 E-value=0.0021 Score=60.73 Aligned_cols=128 Identities=10% Similarity=0.069 Sum_probs=79.1
Q ss_pred hhHHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhh--hCCCeEEEEeccCccCcc---cHH-HHHHhcc--cc
Q 006905 446 NSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAAL--IDFPVWVMNVVPAEAKIN---TLG-VIYERGL--VG 517 (626)
Q Consensus 446 d~~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l--~~~~v~~mnv~~~~~~~~---~l~-~~~~rgl--i~ 517 (626)
....|.+|+-.-..++..+.. + +|+|+|+|-|-=|--| +.... +|+-+|.... .|+ ++.+=|| +-
T Consensus 46 ~~~~~~rHi~DSl~~~~~~~~-~---~ilDiGsGaG~PGi~laI~~p~~---~~~Lves~~KK~~FL~~~~~~L~L~nv~ 118 (207)
T d1jsxa_ 46 PNEMLVRHILDSIVVAPYLQG-E---RFIDVGTGPGLPGIPLSIVRPEA---HFTLLDSLGKRVRFLRQVQHELKLENIE 118 (207)
T ss_dssp --CHHHHHHHHHHHHGGGCCS-S---EEEEETCTTTTTHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHTTCSSEE
T ss_pred HHHHHHHHhcchHhhhhhhcC-C---ceeeeeccCCceeeehhhhcccc---eEEEEecchHHHHHHHHHHHHcCCccee
Confidence 346788888765555555543 2 6999999988444443 33333 4555555422 333 3444455 33
Q ss_pred eeccccccCCCC-C-CccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcChHHHHHHHHHHHhCCCeeE
Q 006905 518 TYTNWCEAMSTY-P-RTYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDVDELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 518 ~~~~~~e~~~~y-p-~t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~~~~~~~~~~~~~l~w~~~ 592 (626)
++| .+...+ + ..||+|-| .+-+.+..++.-..+.|+|||.+++--.....++++.+- -.|+..
T Consensus 119 v~~---~R~E~~~~~~~fD~V~s-------RA~~~~~~ll~~~~~~l~~~g~~~~~KG~~~~eEl~~~~--~~~~~~ 183 (207)
T d1jsxa_ 119 PVQ---SRVEEFPSEPPFDGVIS-------RAFASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLP--EEYQVE 183 (207)
T ss_dssp EEE---CCTTTSCCCSCEEEEEC-------SCSSSHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSC--TTEEEE
T ss_pred eec---cchhhhccccccceehh-------hhhcCHHHHHHHHHHhcCCCcEEEEECCCCHHHHHHhhh--cCCEEE
Confidence 444 444444 3 68999987 334567788888899999999999987665555655543 366553
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.87 E-value=0.00018 Score=68.65 Aligned_cols=115 Identities=18% Similarity=0.204 Sum_probs=70.1
Q ss_pred CceeEEeccCchhhHhhhhhCC---CeEEEEeccCccCcccHHHH----HHhcc---cceecc-ccccCCC----CC-Cc
Q 006905 469 RYRNILDMNAHLGGFAAALIDF---PVWVMNVVPAEAKINTLGVI----YERGL---VGTYTN-WCEAMST----YP-RT 532 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~---~v~~mnv~~~~~~~~~l~~~----~~rgl---i~~~~~-~~e~~~~----yp-~t 532 (626)
+-++||++|||.|..+.+|++. +. -|+.+|..+.+++.+ ...|+ |..+++ ..+.+.. ++ .+
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g---~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~ 132 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGA---RLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDT 132 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTC---EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCC
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCcc---EEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccc
Confidence 3579999999999999888753 33 355667666677655 33465 444442 2333333 33 78
Q ss_pred cceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcC-----hHHHHHHHHHHHhCCCeeEE
Q 006905 533 YDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDD-----VDELVKVKRIIDALKWQSQI 593 (626)
Q Consensus 533 ~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~-----~~~~~~~~~~~~~l~w~~~~ 593 (626)
||+|+.++-.+.+. ....+.|.-|+|||||.+|+-|- .+.+..|+. .=+|....
T Consensus 133 ~D~ifiD~~~~~~~----~~~~l~~~~~lLkpGGvIv~Ddvl~~g~~~~~~~vr~---~~~~~~~~ 191 (214)
T d2cl5a1 133 LDMVFLDHWKDRYL----PDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRG---SSSFECTH 191 (214)
T ss_dssp EEEEEECSCGGGHH----HHHHHHHHTTCEEEEEEEEESCCCCCCCHHHHHHHHH---CTTEEEEE
T ss_pred cceeeecccccccc----cHHHHHHHhCccCCCcEEEEeCcCCCCChHHHHHHhc---cCceeehh
Confidence 99999854332221 13457788899999997665331 234444433 44666554
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=96.87 E-value=0.00015 Score=70.66 Aligned_cols=97 Identities=13% Similarity=0.157 Sum_probs=63.8
Q ss_pred CCceeEEeccCchhhHhhhhhCC--CeEEEEeccCccCcccHHHHHHhcccceeccccccCCCCCCccceeeeccccccC
Q 006905 468 GRYRNILDMNAHLGGFAAALIDF--PVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTYPRTYDLIHADSVFSLY 545 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~--~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~yp~t~Dlih~~~~f~~~ 545 (626)
...++|+|+|+|.|.++.+++++ .+ .++-.|.+ .+++.+-...=+.... .+|-+-+..+|++...++++++
T Consensus 79 ~~~~~vvDvGGG~G~~~~~l~~~~P~l---~~~v~Dlp-~vi~~~~~~~rv~~~~---gD~f~~~p~aD~~~l~~vLHdw 151 (244)
T d1fp2a2 79 DGLESIVDVGGGTGTTAKIICETFPKL---KCIVFDRP-QVVENLSGSNNLTYVG---GDMFTSIPNADAVLLKYILHNW 151 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTC---EEEEEECH-HHHTTCCCBTTEEEEE---CCTTTCCCCCSEEEEESCGGGS
T ss_pred cCceEEEEecCCccHHHHHHHHhCCCC---eEEEecCH-HHHHhCcccCceEEEe---cCcccCCCCCcEEEEEeecccC
Confidence 45788999999999999999875 23 34444554 2222211111122222 2232222468999999999998
Q ss_pred CCCCCHHHHHHHhhhhccCC---cEEEEEc
Q 006905 546 KDRCETEDILLEMDRILRPE---GGVIFRD 572 (626)
Q Consensus 546 ~~~c~~~~~l~E~dRiLRPg---G~~i~~d 572 (626)
.+. +-..+|..+.+.|+|| |.++|-|
T Consensus 152 ~d~-~~~~iL~~~~~al~pgg~~~~lli~e 180 (244)
T d1fp2a2 152 TDK-DCLRILKKCKEAVTNDGKRGKVTIID 180 (244)
T ss_dssp CHH-HHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred ChH-HHHHHHHHHHHHcCcccCCcEEEEEE
Confidence 763 3457999999999999 6787765
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.87 E-value=0.00019 Score=67.38 Aligned_cols=115 Identities=21% Similarity=0.258 Sum_probs=75.7
Q ss_pred ceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhcc-----cceeccccccC----CCCC-Cccceeee
Q 006905 470 YRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERGL-----VGTYTNWCEAM----STYP-RTYDLIHA 538 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rgl-----i~~~~~~~e~~----~~yp-~t~Dlih~ 538 (626)
-.+|||++||+||++.++++. +- ..|+.+|..+.++..+.++.- +-.++++-..+ ..++ ..||.|-.
T Consensus 24 ~~~~lD~t~G~Gghs~~il~~~~~--~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~vdgIl~ 101 (192)
T d1m6ya2 24 EKIILDCTVGEGGHSRAILEHCPG--CRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGILM 101 (192)
T ss_dssp TCEEEETTCTTSHHHHHHHHHCTT--CEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEEEE
T ss_pred CCEEEEecCCCcHHHHHHHhcCCC--CeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCCcceeee
Confidence 457999999999999999875 21 379999999999999988742 33444322221 2344 78887766
Q ss_pred ccccccCC----CC--CCHHHHHHHhhhhccCCcEEEEEcChH-HHHHHHHHHHh
Q 006905 539 DSVFSLYK----DR--CETEDILLEMDRILRPEGGVIFRDDVD-ELVKVKRIIDA 586 (626)
Q Consensus 539 ~~~f~~~~----~~--c~~~~~l~E~dRiLRPgG~~i~~d~~~-~~~~~~~~~~~ 586 (626)
+.=.|.++ +| -.+...|.++-++|+|||.+++-.-.. ...-++++++.
T Consensus 102 DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Edr~vk~~f~~ 156 (192)
T d1m6ya2 102 DLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKETFRN 156 (192)
T ss_dssp ECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred ccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHHHHHHHHHhh
Confidence 53233211 11 123468889999999999998753322 23456666654
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=96.82 E-value=0.00019 Score=69.97 Aligned_cols=85 Identities=12% Similarity=0.120 Sum_probs=60.6
Q ss_pred HHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcC---CCeEEEEcccccCCC
Q 006905 197 YIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERG---VPALIGVLAAERLPY 271 (626)
Q Consensus 197 yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg---~~~~~~v~d~~~Lpf 271 (626)
.++.|.+.+.... ..+|||||||+|.++..|++. .++++++++.... .++++. ..+.+..+|+..+++
T Consensus 17 ii~kIv~~~~~~~--~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~-----~l~~~~~~~~n~~ii~~D~l~~~~ 89 (245)
T d1yuba_ 17 VLNQIIKQLNLKE--TDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFN-----LSSEKLKLNTRVTLIHQDILQFQF 89 (245)
T ss_dssp THHHHHHHCCCCS--SEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSS-----SSSCTTTTCSEEEECCSCCTTTTC
T ss_pred HHHHHHHhcCCCC--CCeEEEECCCccHHHHHHHhhcCceeEeeecccchh-----hhhhhhhhccchhhhhhhhhcccc
Confidence 4556677665444 448999999999999999886 6888888775432 222221 246677778888888
Q ss_pred CCCCeeEEEecccccccc
Q 006905 272 PSRAFDMAHCSRCLIPWN 289 (626)
Q Consensus 272 ~d~sFDlV~~~~~l~h~~ 289 (626)
+...++.|+++... +..
T Consensus 90 ~~~~~~~vv~NLPY-~Is 106 (245)
T d1yuba_ 90 PNKQRYKIVGNIPY-HLS 106 (245)
T ss_dssp CCSSEEEEEEECCS-SSC
T ss_pred ccceeeeEeeeeeh-hhh
Confidence 88888888888865 443
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.71 E-value=0.0022 Score=64.20 Aligned_cols=121 Identities=18% Similarity=0.146 Sum_probs=74.2
Q ss_pred CceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cccceeccc-cccCCC-------CCCcccee
Q 006905 469 RYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GLVGTYTNW-CEAMST-------YPRTYDLI 536 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gli~~~~~~-~e~~~~-------yp~t~Dli 536 (626)
+-++|||+.||+|+|+.+++..+. .|+.+|.++..++.+.+. |+-..-|.+ ++.... -.+.||+|
T Consensus 132 ~~~rVLdlf~~tG~~sl~aa~~GA---~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~I 208 (309)
T d2igta1 132 RPLKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII 208 (309)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred CCCeEEEecCCCcHHHHHHHhCCC---eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEE
Confidence 356899999999999999999987 688899999999888764 332111221 222211 13789999
Q ss_pred eeccc-cccCCC------CCCHHHHHHHhhhhccCCcEEEEE-c------ChHHHHHHHHHHHhCCCeeE
Q 006905 537 HADSV-FSLYKD------RCETEDILLEMDRILRPEGGVIFR-D------DVDELVKVKRIIDALKWQSQ 592 (626)
Q Consensus 537 h~~~~-f~~~~~------~c~~~~~l~E~dRiLRPgG~~i~~-d------~~~~~~~~~~~~~~l~w~~~ 592 (626)
-++== |..... +-.+..++..+-++|+|||.+++. - .....+.+++.+......+.
T Consensus 209 ilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~~~s~~~~~~~~~~~~~~ag~~v~ 278 (309)
T d2igta1 209 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA 278 (309)
T ss_dssp EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred EECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCcce
Confidence 87422 321111 112234556678999999975553 1 12223444555555556554
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=96.71 E-value=0.0036 Score=60.39 Aligned_cols=94 Identities=9% Similarity=0.048 Sum_probs=60.9
Q ss_pred CCEEEEeCCCCchHHHHHh----hCCcEEEeCCccchHHHHHH-HHHHcCCCeEE-EEcccccCCC---CCCCeeEEEec
Q 006905 212 IRTAIDTGCGVASWGAYLL----SRNIITMSFAPRDTHEAQVQ-FALERGVPALI-GVLAAERLPY---PSRAFDMAHCS 282 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La----~~~V~avdis~~dls~a~i~-~A~erg~~~~~-~v~d~~~Lpf---~d~sFDlV~~~ 282 (626)
..+++|||+|.|.-|.-|+ +..++-+|-...- .++++ ...+-++.... ....++.+.. ..+.||+|+|.
T Consensus 71 ~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK--~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sR 148 (239)
T d1xdza_ 71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKR--ITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (239)
T ss_dssp CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHH--HHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCeEEeecCCCchHHHHHHHhCCCccceeecchHHH--HHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEh
Confidence 4589999999995555444 3367777765432 22333 33455665443 3333444432 23579999995
Q ss_pred cccccccccHHHHHHHHHhcccCCeEEEEE
Q 006905 283 RCLIPWNQFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 283 ~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
.+. ....++.-....|++||.+++-
T Consensus 149 Ava-----~l~~ll~~~~~~l~~~g~~i~~ 173 (239)
T d1xdza_ 149 AVA-----RLSVLSELCLPLVKKNGLFVAL 173 (239)
T ss_dssp CCS-----CHHHHHHHHGGGEEEEEEEEEE
T ss_pred hhh-----CHHHHHHHHhhhcccCCEEEEE
Confidence 432 3578899999999999999986
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=96.71 E-value=0.00015 Score=67.45 Aligned_cols=140 Identities=13% Similarity=0.106 Sum_probs=71.8
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHH---HHHHhcccceeccccccCCCC-CCccceeeeccccccC
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLG---VIYERGLVGTYTNWCEAMSTY-PRTYDLIHADSVFSLY 545 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~---~~~~rgli~~~~~~~e~~~~y-p~t~Dlih~~~~f~~~ 545 (626)
..+|||+||+.|||.-++.++--....|+.+|.. .+-+ ..+-.|-++.....-.....+ ...+|+|-|++.+...
T Consensus 23 ~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~-~~~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD~ap~~s 101 (180)
T d1ej0a_ 23 GMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLL-PMDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMS 101 (180)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESS-CCCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCC
T ss_pred CCeEEEEeccCCcceEEEEeeccccceEEEeecc-cccccCCceEeecccccchhhhhhhhhccCcceeEEEecccchhc
Confidence 5579999999999999887531000123333333 2211 011111111100000001112 2679999999998866
Q ss_pred CCCCC--------HHHHHHHhhhhccCCcEEEEE--cChHHHHHHHHHHHhCCCeeEEeecC-CCCCCcceEEEEEe
Q 006905 546 KDRCE--------TEDILLEMDRILRPEGGVIFR--DDVDELVKVKRIIDALKWQSQIVDHE-DGPLEREKLLFAVK 611 (626)
Q Consensus 546 ~~~c~--------~~~~l~E~dRiLRPgG~~i~~--d~~~~~~~~~~~~~~l~w~~~~~~~e-~~~~~~e~~l~~~K 611 (626)
.++-. ....|.=+.++|||||.||+= +..+ ...+...++.+=-++.++-.+ +-+...|.-|||+.
T Consensus 102 g~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~-~~~l~~~l~~~F~~V~~~KP~aSR~~SsE~Ylv~~g 177 (180)
T d1ej0a_ 102 GTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEG-FDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATG 177 (180)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTT-HHHHHHHHHHHEEEEEEECCTTSCTTCCEEEEEEEE
T ss_pred ccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCcc-HHHHHHHHHhhcCEEEEECCCCcccCCceEEEEEec
Confidence 54311 012334446999999999983 3322 222333333332333444332 23446899999974
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=96.63 E-value=0.0016 Score=63.11 Aligned_cols=115 Identities=14% Similarity=0.071 Sum_probs=63.2
Q ss_pred cHHHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCe-EEEEc-cc
Q 006905 193 GADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPA-LIGVL-AA 266 (626)
Q Consensus 193 ga~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~-~~~v~-d~ 266 (626)
.+...+..|.+-..+.+ ..+|+|+|||.|.++.+++.+ .+.+.++-- +.++.-+. ....+-++ .+... +.
T Consensus 50 R~~~Kl~~~~~~~~~~~--~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~-d~~e~P~~-~~~~~~ni~~~~~~~dv 125 (257)
T d2p41a1 50 RGSAKLRWFVERNLVTP--EGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGG-PGHEEPIP-MSTYGWNLVRLQSGVDV 125 (257)
T ss_dssp THHHHHHHHHHTTSSCC--CEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCS-TTSCCCCC-CCSTTGGGEEEECSCCT
T ss_pred hHHHHHHHHHHhcCccC--CCeEEEecCCCChHHHHHHhhcCCCceeEEEecC-ccccCCcc-ccccccccccchhhhhH
Confidence 34444445554443333 348999999999999999876 355555522 22210000 00111111 12111 12
Q ss_pred ccCCCCCCCeeEEEeccccccccc---cH---HHHHHHHHhcccCCeEEEEEeC
Q 006905 267 ERLPYPSRAFDMAHCSRCLIPWNQ---FG---GIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 267 ~~Lpf~d~sFDlV~~~~~l~h~~~---~~---~~~L~Ei~RvLKPGG~lvis~p 314 (626)
.. .+....|+|+|-.+- .-.. +. -.+|.-+.+.|+|||.|++-..
T Consensus 126 ~~--l~~~~~D~vlcDm~e-ss~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl 176 (257)
T d2p41a1 126 FF--IPPERCDTLLCDIGE-SSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 176 (257)
T ss_dssp TT--SCCCCCSEEEECCCC-CCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred Hh--cCCCcCCEEEeeCCC-CCCCchhhhhhHHHHHHHHHHHcccCCEEEEEEC
Confidence 22 346789999997643 1111 01 2566777789999999999653
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.62 E-value=0.0028 Score=62.62 Aligned_cols=107 Identities=10% Similarity=0.042 Sum_probs=70.2
Q ss_pred CCCCCEEEEeCCCCchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCC--CCCCCeeEEEe-
Q 006905 209 DGSIRTAIDTGCGVASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLP--YPSRAFDMAHC- 281 (626)
Q Consensus 209 ~~~~~~VLDIGCGtG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lp--f~d~sFDlV~~- 281 (626)
...+.+|||+++|.|.=+..|++. .++++|+++.-+. ...+.....|..+...+.+....+ ...+.||.|++
T Consensus 100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~-~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~D 178 (284)
T d1sqga2 100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLS-RVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLD 178 (284)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHH-HHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEE
T ss_pred ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhh-hHhhhhhcccccceeeeccccccchhcccccccEEEEe
Confidence 334569999999999777666653 4889999886554 344556666777665554432221 23568999995
Q ss_pred ---cc--cccc-------cccc--------HHHHHHHHHhcccCCeEEEEEeCCC
Q 006905 282 ---SR--CLIP-------WNQF--------GGIYLIEVDRVLRPGGYWILSGPPI 316 (626)
Q Consensus 282 ---~~--~l~h-------~~~~--------~~~~L~Ei~RvLKPGG~lvis~pp~ 316 (626)
+. .+-. +... +..+|..+.+.|||||+++.++-..
T Consensus 179 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~ 233 (284)
T d1sqga2 179 APCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 233 (284)
T ss_dssp CCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred ccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecC
Confidence 22 1110 1110 1368899999999999999987533
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.60 E-value=0.0037 Score=65.02 Aligned_cols=116 Identities=17% Similarity=0.148 Sum_probs=74.4
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhh-----------------CCcEEEeCCccchHHHHHHHHHHcCC
Q 006905 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLS-----------------RNIITMSFAPRDTHEAQVQFALERGV 257 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~-----------------~~V~avdis~~dls~a~i~~A~erg~ 257 (626)
...++.+.+++... ...+|||-.||+|.|...+.+ ..+.+.|+.+....-+...... ++.
T Consensus 148 ~~Iv~~mv~ll~~~--~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l-~g~ 224 (425)
T d2okca1 148 RPLIQAMVDCINPQ--MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL-HGI 224 (425)
T ss_dssp HHHHHHHHHHHCCC--TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH-TTC
T ss_pred hhhhHhhheeccCc--ccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhh-cCC
Confidence 44666777777533 345899999999999876654 2478899877554444444333 232
Q ss_pred C---eEEEEcccccCCCCCCCeeEEEecccccccc----------------ccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 258 P---ALIGVLAAERLPYPSRAFDMAHCSRCLIPWN----------------QFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 258 ~---~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h~~----------------~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
. ..+...|.... .+...||+|+++..+..-. .....++..+...|++||.+.+..|
T Consensus 225 ~~~~~~i~~~d~l~~-~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p 299 (425)
T d2okca1 225 GTDRSPIVCEDSLEK-EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 299 (425)
T ss_dssp CSSCCSEEECCTTTS-CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccceeecCchhhh-hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence 2 22333343222 3456899999988652110 0013588999999999999999876
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=96.51 E-value=0.0033 Score=62.97 Aligned_cols=161 Identities=10% Similarity=0.032 Sum_probs=93.8
Q ss_pred hhHHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhc------c---
Q 006905 446 NSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERG------L--- 515 (626)
Q Consensus 446 d~~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rg------l--- 515 (626)
|...+.+.+.+..-+ .. ...++||.+|.|.|+.++.+++. ++ .+|+-++..+..++++.+.- .
T Consensus 59 de~~Yhe~l~h~~l~----~~-~~pk~VLiiG~G~G~~~~~ll~~~~~--~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d 131 (312)
T d1uira_ 59 DEYIYHETLVHPAML----TH-PEPKRVLIVGGGEGATLREVLKHPTV--EKAVMVDIDGELVEVAKRHMPEWHQGAFDD 131 (312)
T ss_dssp THHHHHHHHHHHHHH----HS-SCCCEEEEEECTTSHHHHHHTTSTTC--CEEEEEESCHHHHHHHHHHCHHHHTTGGGC
T ss_pred cHHHHHHHHhhhhhh----hC-CCcceEEEeCCCchHHHHHHHhcCCc--ceEEEecCCHHHHHHHHhcCcccccCccCC
Confidence 444566555543221 22 45789999999999999998876 34 46677777777888776541 1
Q ss_pred --cceec-cccccCCCCCCccceeeeccc--cccCCCCCCH--HHHHHHhhhhccCCcEEEEE------cChHHHHHHHH
Q 006905 516 --VGTYT-NWCEAMSTYPRTYDLIHADSV--FSLYKDRCET--EDILLEMDRILRPEGGVIFR------DDVDELVKVKR 582 (626)
Q Consensus 516 --i~~~~-~~~e~~~~yp~t~Dlih~~~~--f~~~~~~c~~--~~~l~E~dRiLRPgG~~i~~------d~~~~~~~~~~ 582 (626)
+.+++ |.-+-+...++.||+|..+.. +........+ ...+..+.|.|+|||.++.. ...+....+.+
T Consensus 132 ~rv~i~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~ 211 (312)
T d1uira_ 132 PRAVLVIDDARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHR 211 (312)
T ss_dssp TTEEEEESCHHHHHHHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHH
T ss_pred CceEEEEchHHHHhhhcCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHH
Confidence 12222 333333345689999986432 2111000111 46888999999999999983 12345566666
Q ss_pred HHHhCCCeeEEeecCCCCC-CcceEEEEEecc
Q 006905 583 IIDALKWQSQIVDHEDGPL-EREKLLFAVKLY 613 (626)
Q Consensus 583 ~~~~l~w~~~~~~~e~~~~-~~e~~l~~~K~~ 613 (626)
.+++.=..+..+..---+. ....+++|.|..
T Consensus 212 tl~~~F~~V~~y~~~vPs~~~~w~f~~aS~~~ 243 (312)
T d1uira_ 212 TVREAFRYVRSYKNHIPGFFLNFGFLLASDAF 243 (312)
T ss_dssp HHHTTCSEEEEEEEEEGGGTEEEEEEEEESSS
T ss_pred HHHHhCceEEEEEeeeCCcCCCCEeEEEeCCC
Confidence 6655544554432110000 124578888864
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=96.47 E-value=0.0031 Score=62.94 Aligned_cols=143 Identities=14% Similarity=0.150 Sum_probs=86.3
Q ss_pred CCceeEEeccCchhhHhhhhh----CCCeEEEEeccCccCcccHHHHHHhcc-----cceeccccccCCCCC-Cccceee
Q 006905 468 GRYRNILDMNAHLGGFAAALI----DFPVWVMNVVPAEAKINTLGVIYERGL-----VGTYTNWCEAMSTYP-RTYDLIH 537 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~----~~~v~~mnv~~~~~~~~~l~~~~~rgl-----i~~~~~~~e~~~~yp-~t~Dlih 537 (626)
....+|||.+||.|+|..++. +..-...++.++|..+.++.++...-. ....+ ...+...+ ..||+|-
T Consensus 116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~--~d~~~~~~~~~fD~vi 193 (328)
T d2f8la1 116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLH--QDGLANLLVDPVDVVI 193 (328)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEE--SCTTSCCCCCCEEEEE
T ss_pred CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhc--cccccccccccccccc
Confidence 456789999999999988774 333345588899988777776654322 22222 12333444 8899999
Q ss_pred eccccccCCC--------------CCCHHH-HHHHhhhhccCCcEEEEE--cCh---HHHHHHHHHHHhCCCeeEEeecC
Q 006905 538 ADSVFSLYKD--------------RCETED-ILLEMDRILRPEGGVIFR--DDV---DELVKVKRIIDALKWQSQIVDHE 597 (626)
Q Consensus 538 ~~~~f~~~~~--------------~c~~~~-~l~E~dRiLRPgG~~i~~--d~~---~~~~~~~~~~~~l~w~~~~~~~e 597 (626)
++-=|..... .-++.. .+..+-+.|+|||.+++= ... ..-.++++.+-.-.+-..+++..
T Consensus 194 ~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~~~~~i~~ii~lp 273 (328)
T d2f8la1 194 SDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHIEGIIKLP 273 (328)
T ss_dssp EECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEEEEEEECC
T ss_pred cCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHHHHHhCCcEEEEEECC
Confidence 9877753211 112223 456678999999986553 221 23456666544433433344432
Q ss_pred C----CCCCcceEEEEEec
Q 006905 598 D----GPLEREKLLFAVKL 612 (626)
Q Consensus 598 ~----~~~~~e~~l~~~K~ 612 (626)
. +...+--|||.+|+
T Consensus 274 ~~~F~~~~~~t~ilvl~K~ 292 (328)
T d2f8la1 274 ETLFKSEQARKSILILEKA 292 (328)
T ss_dssp GGGSCC-CCCEEEEEEEEC
T ss_pred ccccCCCCCCeEEEEEECC
Confidence 2 23345578999885
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.44 E-value=0.0041 Score=62.31 Aligned_cols=106 Identities=17% Similarity=0.137 Sum_probs=66.2
Q ss_pred CCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCC-eEEEEcccccCCCCCCCeeEEEe--
Q 006905 210 GSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVP-ALIGVLAAERLPYPSRAFDMAHC-- 281 (626)
Q Consensus 210 ~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~-~~~~v~d~~~Lpf~d~sFDlV~~-- 281 (626)
..+.+|||+.||.|.=+..++.. .++++|+++.-+.. ..+.....|+. +.....|...++..+..||.|++
T Consensus 115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~-l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDa 193 (313)
T d1ixka_ 115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRE-TRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 193 (313)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHH-HHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHH-HHHHHHHHHhhccccccccccccccccccccEEEEcc
Confidence 34559999999999766666542 47888887643332 22333444554 34444455556666778999995
Q ss_pred --cc--ccc-----ccccc----------HHHHHHHHHhcccCCeEEEEEeCCC
Q 006905 282 --SR--CLI-----PWNQF----------GGIYLIEVDRVLRPGGYWILSGPPI 316 (626)
Q Consensus 282 --~~--~l~-----h~~~~----------~~~~L~Ei~RvLKPGG~lvis~pp~ 316 (626)
+. ++. .|... +..+|....+.|||||+++.++-..
T Consensus 194 PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl 247 (313)
T d1ixka_ 194 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 247 (313)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred ccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccC
Confidence 21 110 11100 1267889999999999999986433
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.28 E-value=0.0073 Score=58.39 Aligned_cols=121 Identities=10% Similarity=-0.011 Sum_probs=81.2
Q ss_pred CCceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhc----c---cceec-cccccCCC----CC-Ccc
Q 006905 468 GRYRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERG----L---VGTYT-NWCEAMST----YP-RTY 533 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rg----l---i~~~~-~~~e~~~~----yp-~t~ 533 (626)
....+|||+|||+|..+..|+.+ +-| +++++|.++..+++|.+.- + +-++| +|-+.+.. .. ..|
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~--~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~f 137 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLGATLNGW--YFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIY 137 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCB
T ss_pred cccceEEEeCCCchHHHHHHHHhCCCc--cccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCce
Confidence 45678999999999999999875 223 8999999999999877653 2 22343 23232221 12 679
Q ss_pred ceeeeccccccCCCC--------------------------------CCHHHHHHHhhhhccCCcEEEEEcC-hHHHHHH
Q 006905 534 DLIHADSVFSLYKDR--------------------------------CETEDILLEMDRILRPEGGVIFRDD-VDELVKV 580 (626)
Q Consensus 534 Dlih~~~~f~~~~~~--------------------------------c~~~~~l~E~dRiLRPgG~~i~~d~-~~~~~~~ 580 (626)
|+|-|+-=|-..... .-+..++.|--+.++..|++..--. .+.+.+|
T Consensus 138 D~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~~~~l~~i 217 (250)
T d2h00a1 138 DFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPL 217 (250)
T ss_dssp SEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHH
T ss_pred eEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEecchhhHHHH
Confidence 999987665421100 0134577788889999999865433 4567788
Q ss_pred HHHHHhCCCe
Q 006905 581 KRIIDALKWQ 590 (626)
Q Consensus 581 ~~~~~~l~w~ 590 (626)
+++++.....
T Consensus 218 ~~~L~~~g~~ 227 (250)
T d2h00a1 218 KEELRIQGVP 227 (250)
T ss_dssp HHHHHHTTCS
T ss_pred HHHHHHcCCC
Confidence 8888888774
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=96.13 E-value=0.002 Score=59.41 Aligned_cols=94 Identities=14% Similarity=0.085 Sum_probs=61.3
Q ss_pred eEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh---cccc---eec-cccccCCCCCCccceeeecccccc
Q 006905 472 NILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER---GLVG---TYT-NWCEAMSTYPRTYDLIHADSVFSL 544 (626)
Q Consensus 472 ~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r---gli~---~~~-~~~e~~~~yp~t~Dlih~~~~f~~ 544 (626)
+|||+.||+|.+|-..+++|+. .|+-+|.+...++++.+. .-+. ++. |.-+.+......||+|.++-=|.
T Consensus 46 ~vLDlfaGsG~~giealsrGa~--~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~- 122 (183)
T d2fpoa1 46 QCLDCFAGSGALGLEALSRYAA--GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR- 122 (183)
T ss_dssp EEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS-
T ss_pred hhhhhhccccceeeeEEecCcc--eeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCccc-
Confidence 6999999999999988889875 677788877777765542 2111 222 11111122238899999864432
Q ss_pred CCCCCCHHHHHHHhh--hhccCCcEEEEE
Q 006905 545 YKDRCETEDILLEMD--RILRPEGGVIFR 571 (626)
Q Consensus 545 ~~~~c~~~~~l~E~d--RiLRPgG~~i~~ 571 (626)
....+.+|.-+. .+|+|+|.+|+-
T Consensus 123 ---~~~~~~~l~~l~~~~~L~~~~iIiiE 148 (183)
T d2fpoa1 123 ---RGLLEETINLLEDNGWLADEALIYVE 148 (183)
T ss_dssp ---TTTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred ---cchHHHHHHHHHHCCCCCCCeEEEEE
Confidence 234555554443 589999999984
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=95.79 E-value=0.02 Score=52.68 Aligned_cols=109 Identities=17% Similarity=0.139 Sum_probs=69.1
Q ss_pred HHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcCC-CeEEEEcccccCC-----
Q 006905 199 DDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERGV-PALIGVLAAERLP----- 270 (626)
Q Consensus 199 ~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg~-~~~~~v~d~~~Lp----- 270 (626)
+++.+.+... .+..++|..+|.|..+..++++ .|+++|.++ .+++.+..... ...+.......+.
T Consensus 8 ~Evl~~l~~~--~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~-----~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~ 80 (182)
T d1wg8a2 8 QEALDLLAVR--PGGVYVDATLGGAGHARGILERGGRVIGLDQDP-----EAVARAKGLHLPGLTVVQGNFRHLKRHLAA 80 (182)
T ss_dssp HHHHHHHTCC--TTCEEEETTCTTSHHHHHHHHTTCEEEEEESCH-----HHHHHHHHTCCTTEEEEESCGGGHHHHHHH
T ss_pred HHHHHhcCCC--CCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhh-----hHHHHHhhccccceeEeehHHHHHHHHHHH
Confidence 3444445433 3558999999999999999887 577888755 34445554322 3444444433221
Q ss_pred CCCCCeeEEEeccccccc--cc------cHHHHHHHHHhcccCCeEEEEEeC
Q 006905 271 YPSRAFDMAHCSRCLIPW--NQ------FGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 271 f~d~sFDlV~~~~~l~h~--~~------~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+..+.+|.|+....+..+ .+ .....|.....+|+|||.+++...
T Consensus 81 ~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f 132 (182)
T d1wg8a2 81 LGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF 132 (182)
T ss_dssp TTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence 334679999975443211 11 113578888999999999999753
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=95.48 E-value=0.0022 Score=59.63 Aligned_cols=137 Identities=14% Similarity=0.145 Sum_probs=75.2
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcccceeccccccCCCC-C-CccceeeeccccccCC-
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLVGTYTNWCEAMSTY-P-RTYDLIHADSVFSLYK- 546 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli~~~~~~~e~~~~y-p-~t~Dlih~~~~f~~~~- 546 (626)
-.+|||.+||.|+|..++.++..-.-++..+|..+..+.+...- ..++ ..+... + ..||++.++--|....
T Consensus 20 ~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~~~---~~~~---~~~~~~~~~~~fd~ii~npP~~~~~~ 93 (223)
T d2ih2a1 20 GGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWA---EGIL---ADFLLWEPGEAFDLILGNPPYGIVGE 93 (223)
T ss_dssp TCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTE---EEEE---SCGGGCCCSSCEEEEEECCCCCCBSC
T ss_pred cCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcccc---eeee---eehhccccccccceecccCccccccc
Confidence 45899999999999888764311111466666664443322111 1122 222222 2 8999999987775322
Q ss_pred ------------------------CCCCHH-HHHHHhhhhccCCcEEEEEcCh-----HHHHHHHH-HHHhCCCeeEEee
Q 006905 547 ------------------------DRCETE-DILLEMDRILRPEGGVIFRDDV-----DELVKVKR-IIDALKWQSQIVD 595 (626)
Q Consensus 547 ------------------------~~c~~~-~~l~E~dRiLRPgG~~i~~d~~-----~~~~~~~~-~~~~l~w~~~~~~ 595 (626)
...++. ..+...-+.|+|||++++=-+. ..-..+++ |++....++....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~~~~~~~lR~~l~~~~~i~i~~~~ 173 (223)
T d2ih2a1 94 ASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGKTSVYYLG 173 (223)
T ss_dssp TTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHSEEEEEEEE
T ss_pred cccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeeccCcchHHHHHHHHhcCCEEEEcch
Confidence 122232 2455677999999997663211 12345544 4666555433211
Q ss_pred cC-CCCCCcceEEEEEec
Q 006905 596 HE-DGPLEREKLLFAVKL 612 (626)
Q Consensus 596 ~e-~~~~~~e~~l~~~K~ 612 (626)
.- .+...+--|++.+|.
T Consensus 174 ~~F~~~~v~t~i~~~~k~ 191 (223)
T d2ih2a1 174 EVFPQKKVSAVVIRFQKS 191 (223)
T ss_dssp SCSTTCCCCEEEEEEESS
T ss_pred hcCCCCCCcEEEEEEEeC
Confidence 10 123345677778774
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=95.44 E-value=0.011 Score=62.91 Aligned_cols=117 Identities=14% Similarity=0.082 Sum_probs=70.2
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC----------------------CcEEEeCCccchHHHHHHHH
Q 006905 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR----------------------NIITMSFAPRDTHEAQVQFA 252 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~----------------------~V~avdis~~dls~a~i~~A 252 (626)
...++.+.+++.... +.+|+|-.||+|.|.....+. .+.+.++.+....-+..+..
T Consensus 150 ~~Iv~~mv~ll~~~~--~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~ 227 (524)
T d2ar0a1 150 RPLIKTIIHLLKPQP--REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL 227 (524)
T ss_dssp HHHHHHHHHHHCCCT--TCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH
T ss_pred cchhHhhhhcccCcc--chhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHH
Confidence 445667777775433 458999999999988655431 46788886644433333332
Q ss_pred HHcCCCeE------EEEcccccCC-CCCCCeeEEEecccccc-cc------------ccHHHHHHHHHhcccCCeEEEEE
Q 006905 253 LERGVPAL------IGVLAAERLP-YPSRAFDMAHCSRCLIP-WN------------QFGGIYLIEVDRVLRPGGYWILS 312 (626)
Q Consensus 253 ~erg~~~~------~~v~d~~~Lp-f~d~sFDlV~~~~~l~h-~~------------~~~~~~L~Ei~RvLKPGG~lvis 312 (626)
. ++.... +...+....+ .....||+|+++..+.. +. .....++..+.+.|+|||++.+.
T Consensus 228 l-~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiI 306 (524)
T d2ar0a1 228 L-HDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVV 306 (524)
T ss_dssp T-TTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred h-hcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEE
Confidence 2 232211 1111111101 23457999999885521 00 01135889999999999999998
Q ss_pred eC
Q 006905 313 GP 314 (626)
Q Consensus 313 ~p 314 (626)
.|
T Consensus 307 lP 308 (524)
T d2ar0a1 307 VP 308 (524)
T ss_dssp EE
T ss_pred Ee
Confidence 76
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=95.41 E-value=0.0039 Score=57.44 Aligned_cols=96 Identities=19% Similarity=0.194 Sum_probs=63.3
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc---cceeccccccCCC-C---CCccceeee
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL---VGTYTNWCEAMST-Y---PRTYDLIHA 538 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl---i~~~~~~~e~~~~-y---p~t~Dlih~ 538 (626)
-.+|||+.||+|++|-..+++|+ ..|+-+|.+...+.++.+. ++ +.+++.-+..+.. + ...||+|-+
T Consensus 42 ~~~vLDlfaGsG~~g~ea~srGa--~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIfl 119 (182)
T d2fhpa1 42 GGMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL 119 (182)
T ss_dssp SCEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCEEEEcccccccccceeeecch--hHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEe
Confidence 45799999999999999999987 3678888887888876553 32 2233321111111 1 257999987
Q ss_pred ccccccCCCCCCHHHHHHHhh--hhccCCcEEEEE
Q 006905 539 DSVFSLYKDRCETEDILLEMD--RILRPEGGVIFR 571 (626)
Q Consensus 539 ~~~f~~~~~~c~~~~~l~E~d--RiLRPgG~~i~~ 571 (626)
+==|. .-+++.+|..+. .+|+|+|.+|+-
T Consensus 120 DPPY~----~~~~~~~l~~i~~~~~L~~~giIi~E 150 (182)
T d2fhpa1 120 DPPYA----KQEIVSQLEKMLERQLLTNEAVIVCE 150 (182)
T ss_dssp CCCGG----GCCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred chhhh----hhHHHHHHHHHHHCCCCCCCEEEEEE
Confidence 43321 124566666653 589999999884
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=95.35 E-value=0.04 Score=54.36 Aligned_cols=162 Identities=14% Similarity=0.072 Sum_probs=89.7
Q ss_pred hhhHHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCCC-eEEEEeccCccCcccHHHHHHhcc--------
Q 006905 445 QNSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDFP-VWVMNVVPAEAKINTLGVIYERGL-------- 515 (626)
Q Consensus 445 ~d~~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~~-v~~mnv~~~~~~~~~l~~~~~rgl-------- 515 (626)
.|...+++.+.+---+ .. ...++||=+|.|.|+.++.+++.+ + ..|+-++..+.+++++.+.--
T Consensus 70 ~De~~YhE~l~h~pl~----~~-~~pk~VLiiGgG~G~~~r~~l~~~~~--~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d 142 (295)
T d1inla_ 70 KDEFMYHEMLAHVPMF----LH-PNPKKVLIIGGGDGGTLREVLKHDSV--EKAILCEVDGLVIEAARKYLKQTSCGFDD 142 (295)
T ss_dssp TTHHHHHHHHHHHHHH----HS-SSCCEEEEEECTTCHHHHHHTTSTTC--SEEEEEESCHHHHHHHHHHCHHHHGGGGC
T ss_pred CchhhhhhhhcchhHh----hC-CCCceEEEecCCchHHHHHHHhcCCC--ceEEEecCCHHHHHHHHHHHHhhcccccC
Confidence 3445555555443222 22 457899999999999999999874 4 355555666678887766321
Q ss_pred --cceec-cccccCCCCCCccceeeeccccccCCCCCC--HHHHHHHhhhhccCCcEEEEEcC-----hHHHHHHHHHHH
Q 006905 516 --VGTYT-NWCEAMSTYPRTYDLIHADSVFSLYKDRCE--TEDILLEMDRILRPEGGVIFRDD-----VDELVKVKRIID 585 (626)
Q Consensus 516 --i~~~~-~~~e~~~~yp~t~Dlih~~~~f~~~~~~c~--~~~~l~E~dRiLRPgG~~i~~d~-----~~~~~~~~~~~~ 585 (626)
+.+.+ |.-+-+...++.||+|-++..-......+. -...+..+.|.|+|||.++..-. .+....+.+.++
T Consensus 143 ~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~ 222 (295)
T d1inla_ 143 PRAEIVIANGAEYVRKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRIS 222 (295)
T ss_dssp TTEEEEESCHHHHGGGCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHH
T ss_pred CCcEEEhhhHHHHHhcCCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHH
Confidence 11111 222223345689999998533221111111 15788999999999999998522 223333333333
Q ss_pred hCCCeeEEeec--CCCCCCcceEEEEEecc
Q 006905 586 ALKWQSQIVDH--EDGPLEREKLLFAVKLY 613 (626)
Q Consensus 586 ~l~w~~~~~~~--e~~~~~~e~~l~~~K~~ 613 (626)
+.=-.+..+-. -.-+.+.-.+++|.|..
T Consensus 223 ~vF~~v~~y~~~vPtyp~G~w~f~~aSk~~ 252 (295)
T d1inla_ 223 KVFPITRVYLGFMTTYPSGMWSYTFASKGI 252 (295)
T ss_dssp HHCSEEEEEEEECTTSTTSEEEEEEEESSC
T ss_pred hhcceeEEEEeeeceecCcccEEEEEeCCC
Confidence 33333332211 11122344688888864
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=95.34 E-value=0.029 Score=53.28 Aligned_cols=128 Identities=9% Similarity=0.080 Sum_probs=77.2
Q ss_pred CceeEEeccCchhhHhhhhhC---CCeEEEEeccCccCcccHHHHHH----hcc---cceecc-ccccCCC------CCC
Q 006905 469 RYRNILDMNAHLGGFAAALID---FPVWVMNVVPAEAKINTLGVIYE----RGL---VGTYTN-WCEAMST------YPR 531 (626)
Q Consensus 469 ~~r~vlD~g~g~G~faa~l~~---~~v~~mnv~~~~~~~~~l~~~~~----rgl---i~~~~~-~~e~~~~------yp~ 531 (626)
..++||.+|+++|--+.+|++ .+- .|+.++..++...++.+ -|+ |.+.++ ..+.+.. ..+
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~~g---~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~ 135 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPEDG---KILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHG 135 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTC---EEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTT
T ss_pred CCCcEEEecchhhhhHHHHHhhCCCCc---EEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCC
Confidence 378999999999988877763 233 34555655555544333 354 333332 1222222 246
Q ss_pred ccceeeeccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcCh--------------H----HHHHHHH----HHHhCCC
Q 006905 532 TYDLIHADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDV--------------D----ELVKVKR----IIDALKW 589 (626)
Q Consensus 532 t~Dlih~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~--------------~----~~~~~~~----~~~~l~w 589 (626)
+||+|-.+. ++-.....+...-+.|||||.+|+-+-. . ..+.+++ +...=+|
T Consensus 136 ~fD~iFiDa------~k~~y~~~~e~~~~ll~~gGiii~DNvl~~G~v~~~~~~~~~~~~~~~~~~i~~~n~~i~~d~r~ 209 (227)
T d1susa1 136 SYDFIFVDA------DKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRI 209 (227)
T ss_dssp CBSEEEECS------CSTTHHHHHHHHHHHBCTTCCEEEETTTGGGGGGCCTTCCCCHHHHHHHHHHHHHHHHHHHCTTB
T ss_pred ceeEEEecc------chhhhHHHHHHHHhhcCCCcEEEEccCCCCCcccCCcccchHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 899988743 3345667788888999999999985321 1 1222333 2334467
Q ss_pred eeEEeecCCCCCCcceEEEEEe
Q 006905 590 QSQIVDHEDGPLEREKLLFAVK 611 (626)
Q Consensus 590 ~~~~~~~e~~~~~~e~~l~~~K 611 (626)
++.+.-. .+.++|++|
T Consensus 210 ~~~llPi------gDGl~i~~K 225 (227)
T d1susa1 210 EICMLPV------GDGITICRR 225 (227)
T ss_dssp CCEEECS------TTCEEEECB
T ss_pred EEEEeec------CCeeEEEEE
Confidence 7777643 366888888
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=95.27 E-value=0.015 Score=56.13 Aligned_cols=111 Identities=14% Similarity=0.078 Sum_probs=62.6
Q ss_pred eEEeccCchhhHhhhhhCCCeEEEEecc----CccCc-ccHHHHHHhcccceeccccccCCCC-CCccceeeeccccccC
Q 006905 472 NILDMNAHLGGFAAALIDFPVWVMNVVP----AEAKI-NTLGVIYERGLVGTYTNWCEAMSTY-PRTYDLIHADSVFSLY 545 (626)
Q Consensus 472 ~vlD~g~g~G~faa~l~~~~v~~mnv~~----~~~~~-~~l~~~~~rgli~~~~~~~e~~~~y-p~t~Dlih~~~~f~~~ 545 (626)
+|+|+|||.||+.-+++++. -++.|.+ +|.++ .+....+..+++..-. -..+... |.-.|+|-|+..=+..
T Consensus 69 ~vvDlG~~pGgws~~~a~~~-~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~--~~dv~~l~~~~~D~vlcDm~ess~ 145 (257)
T d2p41a1 69 KVVDLGCGRGGWSYYCGGLK-NVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQS--GVDVFFIPPERCDTLLCDIGESSP 145 (257)
T ss_dssp EEEEETCTTSHHHHHHHTST-TEEEEEEECCCSTTSCCCCCCCSTTGGGEEEEC--SCCTTTSCCCCCSEEEECCCCCCS
T ss_pred eEEEecCCCChHHHHHHhhc-CCCceeEEEecCccccCCccccccccccccchh--hhhHHhcCCCcCCEEEeeCCCCCC
Confidence 58999999999999998773 1233433 33321 1222222334333211 1122223 4889999997653311
Q ss_pred CCCCCHH-----HHHHHhhhhccCCcEEEEE--c--ChHHHHHHHHHHHhC
Q 006905 546 KDRCETE-----DILLEMDRILRPEGGVIFR--D--DVDELVKVKRIIDAL 587 (626)
Q Consensus 546 ~~~c~~~-----~~l~E~dRiLRPgG~~i~~--d--~~~~~~~~~~~~~~l 587 (626)
. -.++ .+|.=+.++|+|||.|++- . ..+++++|+.+-..+
T Consensus 146 ~--~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v~e~le~lq~~f 194 (257)
T d2p41a1 146 N--PTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQRKH 194 (257)
T ss_dssp S--HHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHHHH
T ss_pred C--chhhhhhHHHHHHHHHHHcccCCEEEEEECCCCChHHHHHHHHHHHHh
Confidence 1 1122 2544457999999999884 2 456666666654433
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.25 E-value=0.03 Score=55.78 Aligned_cols=160 Identities=11% Similarity=0.075 Sum_probs=88.4
Q ss_pred hhHHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhcc---------
Q 006905 446 NSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERGL--------- 515 (626)
Q Consensus 446 d~~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rgl--------- 515 (626)
|...|++.+.+..-+ .. ...++||-+|.|.|+.++.+++. ++ .+|+-++..+..++++.+---
T Consensus 88 de~~YhE~l~h~pl~----~~-~~pk~VLIiGgG~G~~~rellk~~~v--~~v~~VEID~~Vv~~a~~~~~~~~~~~~dp 160 (312)
T d2b2ca1 88 DEFSYQEMLAHLPMF----AH-PDPKRVLIIGGGDGGILREVLKHESV--EKVTMCEIDEMVIDVAKKFLPGMSCGFSHP 160 (312)
T ss_dssp SSSHHHHHHHHHHHH----HS-SSCCEEEEESCTTSHHHHHHTTCTTC--CEEEEECSCHHHHHHHHHHCTTTSGGGGCT
T ss_pred cHHHHHHHhhhHHHh----cC-CCCCeEEEeCCCchHHHHHHHHcCCc--ceEEEEcccHHHHHHHHhhchhhccccCCC
Confidence 334566666554322 22 45789999999999999999986 44 356666666678887766310
Q ss_pred -cceec-cccccCCCCCCccceeeeccccccCCCC-CCHHHHHHHhhhhccCCcEEEEEc-----ChHHHHHHHHHHHhC
Q 006905 516 -VGTYT-NWCEAMSTYPRTYDLIHADSVFSLYKDR-CETEDILLEMDRILRPEGGVIFRD-----DVDELVKVKRIIDAL 587 (626)
Q Consensus 516 -i~~~~-~~~e~~~~yp~t~Dlih~~~~f~~~~~~-c~~~~~l~E~dRiLRPgG~~i~~d-----~~~~~~~~~~~~~~l 587 (626)
+.+++ |--+-+..-++.||+|-.+..-...... ---...+..+.|+|+|||.++..- ..+.+..+.+.++..
T Consensus 161 rv~i~i~Da~~~l~~~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~v 240 (312)
T d2b2ca1 161 KLDLFCGDGFEFLKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKI 240 (312)
T ss_dssp TEEEECSCHHHHHHHCTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHH
T ss_pred CeEEEEchHHHHHHhCCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhc
Confidence 01111 1111112245889999985432221111 011357888999999999999952 223444455444444
Q ss_pred CCeeEEeec--CCCCCCcceEEEEEec
Q 006905 588 KWQSQIVDH--EDGPLEREKLLFAVKL 612 (626)
Q Consensus 588 ~w~~~~~~~--e~~~~~~e~~l~~~K~ 612 (626)
=..+..+-. ..-|.+.-.+++|.|.
T Consensus 241 F~~v~~y~~~vPtyp~G~w~f~~aSk~ 267 (312)
T d2b2ca1 241 FPAVTYAQSIVSTYPSGSMGYLICAKN 267 (312)
T ss_dssp CSEEEEEEEECTTSGGGEEEEEEEESS
T ss_pred cceEEEeeeccCCcCCccceeeEEECC
Confidence 344443321 1111233457888774
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.16 E-value=0.044 Score=53.86 Aligned_cols=105 Identities=10% Similarity=0.010 Sum_probs=61.9
Q ss_pred CCCCEEEEeCCCCchHHHHHhhC-----CcEEEeCCccchHHHHHHHHHHcCCCe-EEEEcccccCCCC---CCCeeEEE
Q 006905 210 GSIRTAIDTGCGVASWGAYLLSR-----NIITMSFAPRDTHEAQVQFALERGVPA-LIGVLAAERLPYP---SRAFDMAH 280 (626)
Q Consensus 210 ~~~~~VLDIGCGtG~~a~~La~~-----~V~avdis~~dls~a~i~~A~erg~~~-~~~v~d~~~Lpf~---d~sFDlV~ 280 (626)
..+.+|||+++|.|.-+.+|++. .++++|+++.-+. ...+.+.+.|+.. .+...|...++.. .+.||.|+
T Consensus 93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~-~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL 171 (293)
T d2b9ea1 93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLA-SMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 171 (293)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHH-HHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHH-HHHHHHHhcCccceeeeehhhhhhcccccccceeeEEe
Confidence 34558999999999877777653 4789998764333 3344555567653 4444555554322 25799999
Q ss_pred e----ccc--cc-----cc----cc--------cHHHHHHHHHhcccCCeEEEEEeCCC
Q 006905 281 C----SRC--LI-----PW----NQ--------FGGIYLIEVDRVLRPGGYWILSGPPI 316 (626)
Q Consensus 281 ~----~~~--l~-----h~----~~--------~~~~~L~Ei~RvLKPGG~lvis~pp~ 316 (626)
+ +.. +- .| .+ .+..++.... .|+|||.++.++-..
T Consensus 172 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl 229 (293)
T d2b9ea1 172 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSL 229 (293)
T ss_dssp ECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCC
T ss_pred ecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccC
Confidence 5 221 10 01 00 0023444455 479999999986533
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=95.10 E-value=0.03 Score=53.42 Aligned_cols=94 Identities=16% Similarity=0.160 Sum_probs=55.6
Q ss_pred CCEEEEeCCCCchHHHHHhh--------CCcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCC----CCCCCeeEE
Q 006905 212 IRTAIDTGCGVASWGAYLLS--------RNIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLP----YPSRAFDMA 279 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~--------~~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lp----f~d~sFDlV 279 (626)
+.+||+||++.|.-+..+++ ..++++|+.+.... .+......+.+..+|..... +....+|+|
T Consensus 81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~-----~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlI 155 (232)
T d2bm8a1 81 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQ-----IPASDMENITLHQGDCSDLTTFEHLREMAHPLI 155 (232)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCC-----CCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEE
T ss_pred CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhh-----hhhccccceeeeecccccHHHHHHHHhcCCCEE
Confidence 45899999999965444432 26889998653211 11122234667777643322 335568888
Q ss_pred EeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 280 HCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 280 ~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+.-.. |.......-+ +...+|+|||++++..
T Consensus 156 fID~~--H~~~~v~~~~-~~~~lLk~GG~iIveD 186 (232)
T d2bm8a1 156 FIDNA--HANTFNIMKW-AVDHLLEEGDYFIIED 186 (232)
T ss_dssp EEESS--CSSHHHHHHH-HHHHTCCTTCEEEECS
T ss_pred EEcCC--cchHHHHHHH-HHhcccCcCCEEEEEc
Confidence 76432 3222222222 4668999999999974
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.96 E-value=0.059 Score=52.70 Aligned_cols=84 Identities=15% Similarity=0.148 Sum_probs=53.3
Q ss_pred HHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcC--CCeEEEEcccccCCC
Q 006905 196 AYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERG--VPALIGVLAAERLPY 271 (626)
Q Consensus 196 ~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg--~~~~~~v~d~~~Lpf 271 (626)
..++.|.+.+.... ...|||||+|.|.++..|+++ .++++++++.... ...+...... ....+..+|+...++
T Consensus 8 ~i~~kIv~~~~~~~--~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~-~L~~~~~~~~~~~~~~~i~~D~l~~~~ 84 (278)
T d1zq9a1 8 LIINSIIDKAALRP--TDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVA-ELHKRVQGTPVASKLQVLVGDVLKTDL 84 (278)
T ss_dssp HHHHHHHHHTCCCT--TCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHH-HHHHHHTTSTTGGGEEEEESCTTTSCC
T ss_pred HHHHHHHHHhCCCC--CCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhH-HHHHHHhhhccccchhhhHHHHhhhhh
Confidence 35566666665444 458999999999999999986 7888888663222 2211111111 235666777666554
Q ss_pred CCCCeeEEEeccc
Q 006905 272 PSRAFDMAHCSRC 284 (626)
Q Consensus 272 ~d~sFDlV~~~~~ 284 (626)
+ .++.|+++..
T Consensus 85 ~--~~~~vV~NLP 95 (278)
T d1zq9a1 85 P--FFDTCVANLP 95 (278)
T ss_dssp C--CCSEEEEECC
T ss_pred h--hhhhhhcchH
Confidence 4 3567888764
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.56 E-value=0.14 Score=49.60 Aligned_cols=98 Identities=17% Similarity=0.129 Sum_probs=62.4
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc-----c-----------cceeccccccCCCC--
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG-----L-----------VGTYTNWCEAMSTY-- 529 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg-----l-----------i~~~~~~~e~~~~y-- 529 (626)
..-++||-+|+|.|+.+..+++.+.- .|+-++..+.+++++.+-- . +-+++ +.-..|
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~~~~--~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~---~Da~~~l~ 145 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQHDVD--EVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTI---GDGFEFIK 145 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCS--EEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEE---SCHHHHHH
T ss_pred CCCceEEEecCCchHHHHHHHHhCCc--eEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEE---ChHHHHHh
Confidence 45789999999999999998888753 3444555667888875421 0 01111 111111
Q ss_pred -CCccceeeeccccccCCCCCC--HHHHHHHhhhhccCCcEEEEE
Q 006905 530 -PRTYDLIHADSVFSLYKDRCE--TEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 530 -p~t~Dlih~~~~f~~~~~~c~--~~~~l~E~dRiLRPgG~~i~~ 571 (626)
.++||+|..+. +.....-.. -...+..+.|.|+|||.++..
T Consensus 146 ~~~~yDvIi~D~-~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q 189 (276)
T d1mjfa_ 146 NNRGFDVIIADS-TDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 189 (276)
T ss_dssp HCCCEEEEEEEC-CCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred ccCCCCEEEEeC-CCCCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence 37899998754 432211111 146789999999999999984
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=94.47 E-value=0.032 Score=53.90 Aligned_cols=70 Identities=16% Similarity=0.113 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhccCCCCCCEEEEeCCCCchHHHHHhhC--CcEEEeCCccchHHHHHHHHHHcC---CCeEEEEcccccC
Q 006905 195 DAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSR--NIITMSFAPRDTHEAQVQFALERG---VPALIGVLAAERL 269 (626)
Q Consensus 195 ~~yi~~L~~ll~l~~~~~~~VLDIGCGtG~~a~~La~~--~V~avdis~~dls~a~i~~A~erg---~~~~~~v~d~~~L 269 (626)
...++.|.+.+.... +..|||||||.|.++..|+++ .++++++++ ..++..+++. ....+..+|+..+
T Consensus 7 ~~~~~~Iv~~~~~~~--~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~-----~l~~~L~~~~~~~~~~~ii~~D~l~~ 79 (252)
T d1qyra_ 7 QFVIDSIVSAINPQK--GQAMVEIGPGLAALTEPVGERLDQLTVIELDR-----DLAARLQTHPFLGPKLTIYQQDAMTF 79 (252)
T ss_dssp HHHHHHHHHHHCCCT--TCCEEEECCTTTTTHHHHHTTCSCEEEECCCH-----HHHHHHHTCTTTGGGEEEECSCGGGC
T ss_pred HHHHHHHHHhcCCCC--CCEEEEECCCchHHHHHHHccCCceEEEEecc-----chhHHHHHHhhhccchhHHhhhhhhh
Confidence 345667777775444 448999999999999999997 788888865 2333333332 2356666676655
Q ss_pred CC
Q 006905 270 PY 271 (626)
Q Consensus 270 pf 271 (626)
++
T Consensus 80 ~~ 81 (252)
T d1qyra_ 80 NF 81 (252)
T ss_dssp CH
T ss_pred cc
Confidence 43
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.40 E-value=0.042 Score=52.28 Aligned_cols=40 Identities=20% Similarity=0.018 Sum_probs=31.1
Q ss_pred eEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc
Q 006905 472 NILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG 514 (626)
Q Consensus 472 ~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg 514 (626)
.|||.=||.|+-|.|-.+.+- +.+.++.++....++.+|=
T Consensus 210 iVLDpF~GSGTT~~Aa~~lgR---~~ig~El~~~y~~~a~~Ri 249 (279)
T d1eg2a_ 210 TVLDFFAGSGVTARVAIQEGR---NSICTDAAPVFKEYYQKQL 249 (279)
T ss_dssp EEEETTCTTCHHHHHHHHHTC---EEEEEESSTHHHHHHHHHH
T ss_pred EEEecCCCCcHHHHHHHHhCC---eEEEEeCCHHHHHHHHHHH
Confidence 599988888877666655554 6788888888888888883
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.09 E-value=0.061 Score=52.71 Aligned_cols=101 Identities=18% Similarity=0.155 Sum_probs=64.4
Q ss_pred CCceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhc------c----cceec-cccccCCCCCCccce
Q 006905 468 GRYRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERG------L----VGTYT-NWCEAMSTYPRTYDL 535 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rg------l----i~~~~-~~~e~~~~yp~t~Dl 535 (626)
..-++||-+|.|.|+.+..+++. ++- +|+-++..+.+++++.+.- + +.+++ |--+-+..-+++||+
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~--~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv 154 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVE--SVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDV 154 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCC--EEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcc--eeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCE
Confidence 45789999999999999999987 453 5555555556888876542 1 11222 222222234689999
Q ss_pred eeeccccccCCCCCCH--HHHHHHhhhhccCCcEEEEE
Q 006905 536 IHADSVFSLYKDRCET--EDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 536 ih~~~~f~~~~~~c~~--~~~l~E~dRiLRPgG~~i~~ 571 (626)
|-++ ++.-...-..+ ...+..+.|.|+|||.+++.
T Consensus 155 Ii~D-~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q 191 (285)
T d2o07a1 155 IITD-SSDPMGPAESLFKESYYQLMKTALKEDGVLCCQ 191 (285)
T ss_dssp EEEE-CC-----------CHHHHHHHHHEEEEEEEEEE
T ss_pred EEEc-CCCCCCcccccccHHHHHHHHHhcCCCCeEEEe
Confidence 9986 34322111111 24788899999999999985
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=93.87 E-value=0.4 Score=46.34 Aligned_cols=161 Identities=11% Similarity=0.084 Sum_probs=90.3
Q ss_pred hhHHHHHHHHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhc-----c----
Q 006905 446 NSELWKKRLSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERG-----L---- 515 (626)
Q Consensus 446 d~~~w~~~v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rg-----l---- 515 (626)
|...+++.+.+.--+ .. ...++||-+|.|.|+.++.+++. ++- +|+-++..++.++++.+-- .
T Consensus 57 de~~Yhe~l~h~~l~----~~-~~p~~vLiiGgG~G~~~~~~l~~~~~~--~i~~VEID~~Vi~~a~~~~~~~~~~~~d~ 129 (274)
T d1iy9a_ 57 DEFVYHEMVAHVPLF----TH-PNPEHVLVVGGGDGGVIREILKHPSVK--KATLVDIDGKVIEYSKKFLPSIAGKLDDP 129 (274)
T ss_dssp THHHHHHHHHHHHHH----HS-SSCCEEEEESCTTCHHHHHHTTCTTCS--EEEEEESCHHHHHHHHHHCHHHHTTTTST
T ss_pred chhhchhhhccchhh----cc-CCcceEEecCCCCcHHHHHHHhcCCcc--eEEEecCCHHHHHHHHHhChhhcccccCC
Confidence 445556555543322 22 44789999999999999999986 453 4444455556888776542 1
Q ss_pred -cceec-cccccCCCCCCccceeeeccccccCCCCCC-HHHHHHHhhhhccCCcEEEEEc-----ChHHHHHHHHHHHhC
Q 006905 516 -VGTYT-NWCEAMSTYPRTYDLIHADSVFSLYKDRCE-TEDILLEMDRILRPEGGVIFRD-----DVDELVKVKRIIDAL 587 (626)
Q Consensus 516 -i~~~~-~~~e~~~~yp~t~Dlih~~~~f~~~~~~c~-~~~~l~E~dRiLRPgG~~i~~d-----~~~~~~~~~~~~~~l 587 (626)
+.++. |--+-+....+.||+|-.+..-......-. -...+..+.|.|+|||.++..- ..+....+.+.++..
T Consensus 130 r~~i~~~D~~~~l~~~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~ 209 (274)
T d1iy9a_ 130 RVDVQVDDGFMHIAKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEI 209 (274)
T ss_dssp TEEEEESCSHHHHHTCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT
T ss_pred CeEEEechHHHHHhhcCCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhh
Confidence 11222 211222234588999988643222111100 1467888999999999999852 223444455544544
Q ss_pred CCeeEEeecCCCC--CCcceEEEEEecc
Q 006905 588 KWQSQIVDHEDGP--LEREKLLFAVKLY 613 (626)
Q Consensus 588 ~w~~~~~~~e~~~--~~~e~~l~~~K~~ 613 (626)
=-.+..+..---+ .+...+++|.|.+
T Consensus 210 F~~v~~y~~~vPsy~~g~w~f~~aS~~~ 237 (274)
T d1iy9a_ 210 FPITKLYTANIPTYPSGLWTFTIGSKKY 237 (274)
T ss_dssp CSEEEEEEECCTTSGGGCEEEEEEESSC
T ss_pred cCceEEEEEEeeecCCCceEEEEEcCCC
Confidence 3344433221111 1234677787764
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.67 E-value=0.12 Score=50.77 Aligned_cols=101 Identities=15% Similarity=0.119 Sum_probs=65.8
Q ss_pred CCceeEEeccCchhhHhhhhhCC-CeEEEEeccCccCcccHHHHHHhc------c----cceec-cccccCCCCC-Cccc
Q 006905 468 GRYRNILDMNAHLGGFAAALIDF-PVWVMNVVPAEAKINTLGVIYERG------L----VGTYT-NWCEAMSTYP-RTYD 534 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~-~v~~mnv~~~~~~~~~l~~~~~rg------l----i~~~~-~~~e~~~~yp-~t~D 534 (626)
...++||=+|.|-|+.++++++. ++- .|+-++..+..++++.+-- + +.++. |--+-+...+ +.||
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~--~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yD 156 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIE--QIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYD 156 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCC--EEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccce--eeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCcc
Confidence 45789999999999999999887 543 4555555556888776532 1 11111 2222233455 6999
Q ss_pred eeeeccccccCCC--CCCHHHHHHHhhhhccCCcEEEEE
Q 006905 535 LIHADSVFSLYKD--RCETEDILLEMDRILRPEGGVIFR 571 (626)
Q Consensus 535 lih~~~~f~~~~~--~c~~~~~l~E~dRiLRPgG~~i~~ 571 (626)
+|-.+ +|.-... .---...+..+.|+|+|||.+++.
T Consensus 157 vIi~D-~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q 194 (290)
T d1xj5a_ 157 AVIVD-SSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 194 (290)
T ss_dssp EEEEC-CCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEc-CCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEe
Confidence 99874 4442111 011146889999999999999995
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=93.67 E-value=0.51 Score=46.65 Aligned_cols=133 Identities=16% Similarity=0.191 Sum_probs=81.8
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cc--cceeccc-cccCCCCC---Cccceee
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GL--VGTYTNW-CEAMSTYP---RTYDLIH 537 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gl--i~~~~~~-~e~~~~yp---~t~Dlih 537 (626)
.....|||+-||.|.|+..|+++.- .|++++.++..++.+.+. |+ +..+++- .+.+...+ ..||+|-
T Consensus 211 ~~~~~vlDLycG~G~fsl~La~~~~---~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vi 287 (358)
T d1uwva2 211 QPEDRVLDLFCGMGNFTLPLATQAA---SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVL 287 (358)
T ss_dssp CTTCEEEEESCTTTTTHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEE
T ss_pred CCCceEEEecccccccchhcccccc---EEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEE
Confidence 4466899999999999999999865 678888887777655543 32 1223321 12222222 6788876
Q ss_pred eccccccCCCCCCHHHHHHHhhhhccCCcEEEEEcChH-HHHHHHHHHHhCCCeeE---EeecCCCCCCcceEEEEEe
Q 006905 538 ADSVFSLYKDRCETEDILLEMDRILRPEGGVIFRDDVD-ELVKVKRIIDALKWQSQ---IVDHEDGPLEREKLLFAVK 611 (626)
Q Consensus 538 ~~~~f~~~~~~c~~~~~l~E~dRiLRPgG~~i~~d~~~-~~~~~~~~~~~l~w~~~---~~~~e~~~~~~e~~l~~~K 611 (626)
. . ..|..+..++.++-+ ++|.-.+++|=+.. ....++.+.+ -.|++. .+|-=.....=|-|.+.+|
T Consensus 288 l----D--PPR~G~~~~~~~l~~-~~~~~ivYVSCnp~TlaRDl~~l~~-~gy~l~~i~~~D~FP~T~HvE~v~~l~R 357 (358)
T d1uwva2 288 L----D--PARAGAAGVMQQIIK-LEPIRIVYVSCNPATLARDSEALLK-AGYTIARLAMLDMFPHTGHLESMVLFSR 357 (358)
T ss_dssp E----C--CCTTCCHHHHHHHHH-HCCSEEEEEESCHHHHHHHHHHHHH-TTCEEEEEEEECCSTTSSCCEEEEEEEC
T ss_pred e----C--CCCccHHHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHH-CCCeEeEEEEEecCCCCccEEEEEEEEe
Confidence 5 2 234445667777766 48988999995444 4455665544 346554 4554444444466665543
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.38 E-value=0.099 Score=53.17 Aligned_cols=97 Identities=11% Similarity=0.035 Sum_probs=62.1
Q ss_pred CCEEEEeCCCCchHHHHHhh-C---CcEEEeCCccchHHHHHHHHHHcCCC----------------eEEEEcccccCCC
Q 006905 212 IRTAIDTGCGVASWGAYLLS-R---NIITMSFAPRDTHEAQVQFALERGVP----------------ALIGVLAAERLPY 271 (626)
Q Consensus 212 ~~~VLDIGCGtG~~a~~La~-~---~V~avdis~~dls~a~i~~A~erg~~----------------~~~~v~d~~~Lpf 271 (626)
+.+|||..||+|..+.+.+. . .|++.|+++..+.... +.++.+++. +.....|+..+..
T Consensus 46 ~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~-~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 46 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMK-RNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHH-HHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHH-HHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 45899999999999986544 3 5788888875443333 333333332 1222223222211
Q ss_pred -CCCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 272 -PSRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 272 -~d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
....||+|..-. +.. +..+|....|.++.||++.++..
T Consensus 125 ~~~~~fDvIDiDP----fGs-~~pfldsAi~a~~~~Gll~vTaT 163 (375)
T d2dula1 125 ERHRYFHFIDLDP----FGS-PMEFLDTALRSAKRRGILGVTAT 163 (375)
T ss_dssp HSTTCEEEEEECC----SSC-CHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hhcCcCCcccCCC----CCC-cHHHHHHHHHHhccCCEEEEEec
Confidence 235699998743 333 47799999999999999999753
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=93.35 E-value=0.11 Score=48.46 Aligned_cols=40 Identities=13% Similarity=0.006 Sum_probs=31.8
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER 513 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r 513 (626)
-.|||-=||+|+-|.|-.+.+- +.+.++.++.-.++|.+|
T Consensus 214 d~VlDpF~GSGTT~~aa~~~~R---~~ig~El~~~y~~~a~~R 253 (256)
T d1g60a_ 214 DLVLDCFMGSGTTAIVAKKLGR---NFIGCDMNAEYVNQANFV 253 (256)
T ss_dssp CEEEESSCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHH
T ss_pred CEEEECCCCchHHHHHHHHcCC---eEEEEeCCHHHHHHHHHH
Confidence 4799998888887777666665 677888888888888877
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=92.41 E-value=0.032 Score=51.16 Aligned_cols=118 Identities=15% Similarity=0.094 Sum_probs=75.4
Q ss_pred ceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc--cceeccccccCCC----CC-Cccceeeecccc
Q 006905 470 YRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL--VGTYTNWCEAMST----YP-RTYDLIHADSVF 542 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl--i~~~~~~~e~~~~----yp-~t~Dlih~~~~f 542 (626)
-.+++|..+|.||.+.+|++++- .|+++|..+.++..+-++-. +..+|..+..+.. +. ..+|.|-.+.=.
T Consensus 19 g~~~vD~T~G~GGhs~~iL~~~~---~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl~DLGv 95 (182)
T d1wg8a2 19 GGVYVDATLGGAGHARGILERGG---RVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVERVDGILADLGV 95 (182)
T ss_dssp TCEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSCEEEEEEECSC
T ss_pred CCEEEEeCCCCcHHHHHHhcccC---cEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCCCccCEEEEEccC
Confidence 44699999999999999999864 78999999888887765422 4677755444443 33 567777665433
Q ss_pred ccCC----CC--CCHHHHHHHhhhhccCCcEEEEEcCh-HHHHHHHHHHHhCCCe
Q 006905 543 SLYK----DR--CETEDILLEMDRILRPEGGVIFRDDV-DELVKVKRIIDALKWQ 590 (626)
Q Consensus 543 ~~~~----~~--c~~~~~l~E~dRiLRPgG~~i~~d~~-~~~~~~~~~~~~l~w~ 590 (626)
|..+ +| ..+...|.....+|+|||.+++-.-- .....++++++.-.++
T Consensus 96 Ss~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~Ed~ivk~~~~e~~~k 150 (182)
T d1wg8a2 96 SSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKRFLRESGLK 150 (182)
T ss_dssp CHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHHHHHHHHHHHHHCSE
T ss_pred CHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccchhHHHHHHHhhccce
Confidence 3221 11 01122444457999999999875332 2234566666654444
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=92.39 E-value=0.056 Score=54.75 Aligned_cols=100 Identities=17% Similarity=0.246 Sum_probs=61.5
Q ss_pred CEEEEeCCCCchHHHHHhhC--------------------CcEEEeCCccchHHHHHHHHHHcC-CCeEEE--Ecc-ccc
Q 006905 213 RTAIDTGCGVASWGAYLLSR--------------------NIITMSFAPRDTHEAQVQFALERG-VPALIG--VLA-AER 268 (626)
Q Consensus 213 ~~VLDIGCGtG~~a~~La~~--------------------~V~avdis~~dls~a~i~~A~erg-~~~~~~--v~d-~~~ 268 (626)
-+|.|+||.+|..+..+.+. .|.--|+-..|.+.-...+..... .+..+. +.. ...
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~ 132 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG 132 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhh
Confidence 46999999999555322111 355667777777654433322221 112232 222 333
Q ss_pred CCCCCCCeeEEEecccccccccc---------------------------------HHHHHHHHHhcccCCeEEEEEe
Q 006905 269 LPYPSRAFDMAHCSRCLIPWNQF---------------------------------GGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 269 Lpf~d~sFDlV~~~~~l~h~~~~---------------------------------~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
--||+++.|++||+.++ ||... ...+|+-=.+-|+|||.+++..
T Consensus 133 rLfP~~Slh~~~Ss~al-HWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~ 209 (359)
T d1m6ex_ 133 RLFPRNTLHFIHSSYSL-MWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp CCSCTTCBSCEEEESCT-TBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hcCCCCceEEeeehhhh-hhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 34789999999999999 77431 0135666666789999999975
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=91.64 E-value=0.22 Score=43.86 Aligned_cols=92 Identities=13% Similarity=0.061 Sum_probs=58.6
Q ss_pred CCCEEEEeCCC-CchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccC--------C-CCCCCee
Q 006905 211 SIRTAIDTGCG-VASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERL--------P-YPSRAFD 277 (626)
Q Consensus 211 ~~~~VLDIGCG-tG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~L--------p-f~d~sFD 277 (626)
.+.+||-+||| .|.++..+++. .++++|. ++..++.+++.+....+..-....- . .....+|
T Consensus 26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~-----~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D 100 (170)
T d1e3ja2 26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTAR-----SPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPN 100 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEES-----CHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCS
T ss_pred CCCEEEEEcccccchhhHhhHhhhcccccccch-----HHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCc
Confidence 34589999998 56666666654 4556555 4467788888886654432111100 0 0124589
Q ss_pred EEEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 278 MAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 278 lV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
+|+-.-. ....+....++|||||.+++.+.
T Consensus 101 ~vid~~g-------~~~~~~~a~~~~~~~G~iv~~G~ 130 (170)
T d1e3ja2 101 VTIDCSG-------NEKCITIGINITRTGGTLMLVGM 130 (170)
T ss_dssp EEEECSC-------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred eeeecCC-------ChHHHHHHHHHHhcCCceEEEec
Confidence 8875321 14678888999999999999864
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.30 E-value=0.13 Score=50.16 Aligned_cols=117 Identities=17% Similarity=0.269 Sum_probs=64.6
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cccceeccccccCC----CCCCccceeeec
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GLVGTYTNWCEAMS----TYPRTYDLIHAD 539 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gli~~~~~~~e~~~----~yp~t~Dlih~~ 539 (626)
..-.+||||.||.||=+.+|++..-= ..|+..|.++.-+....++ |+ ..+.--..... ..+..||.|-++
T Consensus 101 ~~g~~vLD~CAaPGgKt~~la~l~~~-~~i~a~d~~~~R~~~l~~~~~r~g~-~~~~~~~~~~~~~~~~~~~~fd~IL~D 178 (284)
T d1sqga2 101 QNGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGM-KATVKQGDGRYPSQWCGEQQFDRILLD 178 (284)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTC-CCEEEECCTTCTHHHHTTCCEEEEEEE
T ss_pred cccceeEeccCccccchhhhhhhhhh-hhhhhhhcchhhhhhHhhhhhcccc-cceeeeccccccchhcccccccEEEEe
Confidence 44568999999999998887653110 1356666665555444333 33 11110011111 134789988743
Q ss_pred cccc---cCCCCCCHH----------------HHHHHhhhhccCCcEEEEE----cChHHHHHHHHHHHh
Q 006905 540 SVFS---LYKDRCETE----------------DILLEMDRILRPEGGVIFR----DDVDELVKVKRIIDA 586 (626)
Q Consensus 540 ~~f~---~~~~~c~~~----------------~~l~E~dRiLRPgG~~i~~----d~~~~~~~~~~~~~~ 586 (626)
-==| .+..+-++. .+|...-+.|||||++|.+ .+.|.-..|+.++++
T Consensus 179 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv~~~l~~ 248 (284)
T d1sqga2 179 APCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQR 248 (284)
T ss_dssp CCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHH
T ss_pred ccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHHHHHHHh
Confidence 2211 111111222 3888888999999999997 233444455555554
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.11 E-value=0.08 Score=47.06 Aligned_cols=93 Identities=15% Similarity=0.161 Sum_probs=56.7
Q ss_pred CCCEEEEeCCC-CchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEccccc-CCCCCCCeeEEEecccc
Q 006905 211 SIRTAIDTGCG-VASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAER-LPYPSRAFDMAHCSRCL 285 (626)
Q Consensus 211 ~~~~VLDIGCG-tG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~-Lpf~d~sFDlV~~~~~l 285 (626)
++.+||-+|+| .|.++..+++. .++++|.++ ..++.+++.|....+...+... ..-..+.||.|+..-.-
T Consensus 27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~-----~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~ 101 (168)
T d1piwa2 27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSS-----RKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASS 101 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSS-----TTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSC
T ss_pred CCCEEEEECCCCcchhHHHHhhhccccccccccch-----hHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecC
Confidence 35589999998 56777766654 566777655 3456777778654432111111 11124579988763222
Q ss_pred ccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 286 IPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 286 ~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
.+ ...+....++|+|||.+++.+
T Consensus 102 ~~-----~~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 102 LT-----DIDFNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp ST-----TCCTTTGGGGEEEEEEEEECC
T ss_pred Cc-----cchHHHHHHHhhccceEEEec
Confidence 11 112456789999999999975
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=91.00 E-value=0.09 Score=47.74 Aligned_cols=94 Identities=14% Similarity=0.138 Sum_probs=58.9
Q ss_pred eEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHh----cccc---eec-cccccCCCCC---Cccceeeecc
Q 006905 472 NILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYER----GLVG---TYT-NWCEAMSTYP---RTYDLIHADS 540 (626)
Q Consensus 472 ~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~r----gli~---~~~-~~~e~~~~yp---~t~Dlih~~~ 540 (626)
+|||+-||+|.+|-.-+++|+- .|+-+|.+...+.++.+. |+-. ..+ +-+..+...+ ..||+|.++=
T Consensus 46 ~vLDlFaGsG~~glEalSRGA~--~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlDP 123 (183)
T d2ifta1 46 ECLDGFAGSGSLGFEALSRQAK--KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDP 123 (183)
T ss_dssp EEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECC
T ss_pred eEeecccCccceeeeeeeecce--eeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEech
Confidence 6999999999999999999984 677777776666655543 1211 111 1111222222 5699998854
Q ss_pred ccccCCCCCCHHHHHHHh--hhhccCCcEEEEE
Q 006905 541 VFSLYKDRCETEDILLEM--DRILRPEGGVIFR 571 (626)
Q Consensus 541 ~f~~~~~~c~~~~~l~E~--dRiLRPgG~~i~~ 571 (626)
=|.. -..+.+|.-+ ..+|+|+|.+|+-
T Consensus 124 PY~~----~~~~~~l~~l~~~~~L~~~~liiiE 152 (183)
T d2ifta1 124 PFHF----NLAEQAISLLCENNWLKPNALIYVE 152 (183)
T ss_dssp CSSS----CHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred hHhh----hhHHHHHHHHHHhCCcCCCcEEEEE
Confidence 4332 1234444444 3689999999983
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=90.94 E-value=0.29 Score=48.22 Aligned_cols=117 Identities=16% Similarity=0.220 Sum_probs=64.1
Q ss_pred ceeEEeccCchhhHhhhhh----CCCeEEEEeccCccCcccHHHHH---Hh-cccc--eeccccccCCCCCCccceeeec
Q 006905 470 YRNILDMNAHLGGFAAALI----DFPVWVMNVVPAEAKINTLGVIY---ER-GLVG--TYTNWCEAMSTYPRTYDLIHAD 539 (626)
Q Consensus 470 ~r~vlD~g~g~G~faa~l~----~~~v~~mnv~~~~~~~~~l~~~~---~r-gli~--~~~~~~e~~~~yp~t~Dlih~~ 539 (626)
-.+||||.||.||=+..|+ ..+. ++..|.+..-+.... +| |+.. ++++-...+..++..||.|-.+
T Consensus 117 g~~vlD~CAapGgKt~~l~~~~~~~~~----i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvD 192 (313)
T d1ixka_ 117 GEIVADMAAAPGGKTSYLAQLMRNDGV----IYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLD 192 (313)
T ss_dssp TCEEEECCSSCSHHHHHHHHHTTTCSE----EEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEE
T ss_pred cceeeecccchhhhhHhhhhhcccccc----eeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEc
Confidence 3479999999999666654 2333 556666655554332 22 3322 2222112222334789987643
Q ss_pred cccccC---CCC---------CCHH-------HHHHHhhhhccCCcEEEEE----cChHHHHHHHHHHHhCCCe
Q 006905 540 SVFSLY---KDR---------CETE-------DILLEMDRILRPEGGVIFR----DDVDELVKVKRIIDALKWQ 590 (626)
Q Consensus 540 ~~f~~~---~~~---------c~~~-------~~l~E~dRiLRPgG~~i~~----d~~~~~~~~~~~~~~l~w~ 590 (626)
-==|.. ... -++. .+|...-+.|||||++|.+ .+.+.-..|+.++++..++
T Consensus 193 aPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~~~L~~~~~~ 266 (313)
T d1ixka_ 193 APCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVE 266 (313)
T ss_dssp CCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSEE
T ss_pred cccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHHHHHHhcCCCE
Confidence 221111 000 0111 3888888999999999997 2333344555566665443
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=90.47 E-value=0.3 Score=44.59 Aligned_cols=94 Identities=17% Similarity=0.056 Sum_probs=59.7
Q ss_pred CCEEEEeCCCC-chHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCC--------CCCCeeE
Q 006905 212 IRTAIDTGCGV-ASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPY--------PSRAFDM 278 (626)
Q Consensus 212 ~~~VLDIGCGt-G~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf--------~d~sFDl 278 (626)
+.+||-+|||. |..+..+++. .|+++|.+ +..+++|++.|....+ +....++ ....+|+
T Consensus 26 G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~-----~~rl~~a~~~Ga~~~~---~~~~~~~~~~i~~~t~g~g~D~ 97 (195)
T d1kola2 26 GSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLN-----PARLAHAKAQGFEIAD---LSLDTPLHEQIAALLGEPEVDC 97 (195)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC-----HHHHHHHHHTTCEEEE---TTSSSCHHHHHHHHHSSSCEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHhhcccceeeeccc-----chhhHhhhhccccEEE---eCCCcCHHHHHHHHhCCCCcEE
Confidence 45999999997 5566666653 56677763 4577788888864322 2111111 2346899
Q ss_pred EEecccc------cc--ccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 279 AHCSRCL------IP--WNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 279 V~~~~~l------~h--~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
++-.-.. ++ ........|.+..+++||||.+++.+
T Consensus 98 vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 98 AVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp EEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred EEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence 8843211 01 01112578999999999999999986
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=88.86 E-value=0.53 Score=41.85 Aligned_cols=89 Identities=20% Similarity=0.313 Sum_probs=56.2
Q ss_pred CCEEEEeCCC-CchHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEccc---------ccCCCCCCCee
Q 006905 212 IRTAIDTGCG-VASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAA---------ERLPYPSRAFD 277 (626)
Q Consensus 212 ~~~VLDIGCG-tG~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~---------~~Lpf~d~sFD 277 (626)
+.+||-+|+| .|.++..+++. .|+++|. ++...+.+++.|....+-..+. .++ .....||
T Consensus 29 G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~-----~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~-~~~~g~D 102 (182)
T d1vj0a2 29 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAG-----SPNRLKLAEEIGADLTLNRRETSVEERRKAIMDI-THGRGAD 102 (182)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBSEEEEEES-----CHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHH-TTTSCEE
T ss_pred CCEEEEECCCccchhheeccccccccccccccc-----ccccccccccccceEEEeccccchHHHHHHHHHh-hCCCCce
Confidence 5589999988 36666666664 3566665 4456678888876543321111 011 1234599
Q ss_pred EEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 278 MAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 278 lV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+|+-.-.- ...+....+.|+|||.+++.+
T Consensus 103 vvid~vG~-------~~~~~~a~~~l~~~G~iv~~G 131 (182)
T d1vj0a2 103 FILEATGD-------SRALLEGSELLRRGGFYSVAG 131 (182)
T ss_dssp EEEECSSC-------TTHHHHHHHHEEEEEEEEECC
T ss_pred EEeecCCc-------hhHHHHHHHHhcCCCEEEEEe
Confidence 98853211 345788899999999999875
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=88.25 E-value=0.43 Score=42.53 Aligned_cols=95 Identities=15% Similarity=0.121 Sum_probs=59.9
Q ss_pred hhccCCCCCCEEEEeCCCC-chHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCC------CC
Q 006905 204 LINLNDGSIRTAIDTGCGV-ASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLP------YP 272 (626)
Q Consensus 204 ll~l~~~~~~~VLDIGCGt-G~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lp------f~ 272 (626)
.....+ +.+||=+|||. |.++..+++. .|+++|.+ +...+.+++.|....+. .....+. ..
T Consensus 22 ~a~~~~--g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~-----~~r~~~a~~lGa~~~i~-~~~~~~~~~v~~~t~ 93 (174)
T d1jqba2 22 LADIEM--GSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSR-----PICVEAAKFYGATDILN-YKNGHIEDQVMKLTN 93 (174)
T ss_dssp HTTCCT--TCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCC-----HHHHHHHHHHTCSEEEC-GGGSCHHHHHHHHTT
T ss_pred HhCCCC--CCEEEEEcCCcchhhhhhhhhcccccccccccch-----hhhHHHHHhhCcccccc-ccchhHHHHHHHHhh
Confidence 334444 44788899985 7777777774 57777763 45677888878643331 1111110 12
Q ss_pred CCCeeEEEeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 273 SRAFDMAHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 273 d~sFDlV~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
...||+|+-.-.. ...+.+..++|||||.+++.+
T Consensus 94 g~G~D~vid~~g~-------~~~~~~a~~~~~~~G~iv~~G 127 (174)
T d1jqba2 94 GKGVDRVIMAGGG-------SETLSQAVKMVKPGGIISNIN 127 (174)
T ss_dssp TSCEEEEEECSSC-------TTHHHHHHHHEEEEEEEEECC
T ss_pred ccCcceEEEccCC-------HHHHHHHHHHHhcCCEEEEEe
Confidence 3459998754321 345788889999999999975
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.20 E-value=0.32 Score=43.04 Aligned_cols=89 Identities=16% Similarity=0.203 Sum_probs=56.6
Q ss_pred CCCEEEEeCC--CCchHHHHHhhC-CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCC--------CCCCCeeEE
Q 006905 211 SIRTAIDTGC--GVASWGAYLLSR-NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLP--------YPSRAFDMA 279 (626)
Q Consensus 211 ~~~~VLDIGC--GtG~~a~~La~~-~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lp--------f~d~sFDlV 279 (626)
++.+||-+|+ |.|..+..+++. +..++-++. ++...+++++.|....+ +..... ...+.||+|
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~---~~~~~~~~~~~Ga~~vi---~~~~~~~~~~i~~~t~~~g~d~v 101 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAG---TEEGQKIVLQNGAHEVF---NHREVNYIDKIKKYVGEKGIDII 101 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEE---ETTSTTHHHHHHHHHCTTCEEEE
T ss_pred CCCEEEEEeccccccccccccccccCcccccccc---cccccccccccCccccc---ccccccHHHHhhhhhccCCceEE
Confidence 3558999996 356667666664 443333321 23456778888865443 222211 134579999
Q ss_pred EeccccccccccHHHHHHHHHhcccCCeEEEEEe
Q 006905 280 HCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSG 313 (626)
Q Consensus 280 ~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~ 313 (626)
+..- ....+.+..++|+|||.++..+
T Consensus 102 ~d~~--------g~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 102 IEML--------ANVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp EESC--------HHHHHHHHHHHEEEEEEEEECC
T ss_pred eecc--------cHHHHHHHHhccCCCCEEEEEe
Confidence 8743 1346888899999999999865
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=88.14 E-value=1.5 Score=41.49 Aligned_cols=41 Identities=10% Similarity=-0.116 Sum_probs=35.7
Q ss_pred eeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhc
Q 006905 471 RNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERG 514 (626)
Q Consensus 471 r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rg 514 (626)
-.|||-=||+|+.+++-.+.+. +.+.+|.++...+++.+|=
T Consensus 252 diVlDpF~GSGTT~~AA~~lgR---~~Ig~El~~~y~~~a~~Rl 292 (320)
T d1booa_ 252 DLVVDIFGGSNTTGLVAERESR---KWISFEMKPEYVAASAFRF 292 (320)
T ss_dssp CEEEETTCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHGGG
T ss_pred CEEEecCCCCcHHHHHHHHcCC---cEEEEeCCHHHHHHHHHHH
Confidence 4799999999999888877776 7889999999999999883
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=87.12 E-value=0.47 Score=42.01 Aligned_cols=91 Identities=15% Similarity=0.106 Sum_probs=56.5
Q ss_pred CCCEEEEeCCCC-chHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccC-----CCCCCCeeEEE
Q 006905 211 SIRTAIDTGCGV-ASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERL-----PYPSRAFDMAH 280 (626)
Q Consensus 211 ~~~~VLDIGCGt-G~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~L-----pf~d~sFDlV~ 280 (626)
++.+||=+|||. |..+..+++. .++++|. ++..++++++.|....+- .+.+.. .+.++.||+|+
T Consensus 28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~-----~~~k~~~a~~~Ga~~~i~-~~~~~~~~~i~~~t~gg~D~vi 101 (174)
T d1f8fa2 28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDI-----VESRLELAKQLGATHVIN-SKTQDPVAAIKEITDGGVNFAL 101 (174)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEES-----CHHHHHHHHHHTCSEEEE-TTTSCHHHHHHHHTTSCEEEEE
T ss_pred CCCEEEEeCCCHHHhhhhhcccccccceeeeecc-----HHHHHHHHHHcCCeEEEe-CCCcCHHHHHHHHcCCCCcEEE
Confidence 355899899974 3445555543 3455555 345677888888643332 111111 12245799987
Q ss_pred eccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 281 CSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 281 ~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
-.-. ....+.+..++|+|+|.+++.+.
T Consensus 102 d~~G-------~~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 102 ESTG-------SPEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp ECSC-------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred EcCC-------cHHHHHHHHhcccCceEEEEEee
Confidence 5321 15678899999999999999763
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.46 E-value=0.64 Score=40.83 Aligned_cols=90 Identities=12% Similarity=0.092 Sum_probs=57.9
Q ss_pred CCEEEEeCCCC-chHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCC--------CCCCCeeE
Q 006905 212 IRTAIDTGCGV-ASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLP--------YPSRAFDM 278 (626)
Q Consensus 212 ~~~VLDIGCGt-G~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lp--------f~d~sFDl 278 (626)
+.+||=+|+|. |.++..+++. .|+++|. ++..+++|++.|........ ..... -....+|+
T Consensus 27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~-----~~~rl~~a~~~Ga~~~~~~~-~~~~~~~~~~~~~~~g~g~Dv 100 (171)
T d1pl8a2 27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDL-----SATRLSKAKEIGADLVLQIS-KESPQEIARKVEGQLGCKPEV 100 (171)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEES-----CHHHHHHHHHTTCSEEEECS-SCCHHHHHHHHHHHHTSCCSE
T ss_pred CCEEEEECCCccHHHHHHHHHHcCCceEEeccC-----CHHHHHHHHHhCCccccccc-ccccccccccccccCCCCceE
Confidence 45899999985 4555555553 4666665 44677788888865444321 11100 01246899
Q ss_pred EEeccccccccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 279 AHCSRCLIPWNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 279 V~~~~~l~h~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
|+-.-. ....+....+.+|+||.+++.+.
T Consensus 101 vid~~G-------~~~~~~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 101 TIECTG-------AEASIQAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp EEECSC-------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred EEeccC-------CchhHHHHHHHhcCCCEEEEEec
Confidence 876332 15678899999999999999864
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=86.23 E-value=0.13 Score=49.22 Aligned_cols=68 Identities=10% Similarity=0.118 Sum_probs=47.1
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhcc----cceeccccccCCCCC---Cccceeeecc
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGL----VGTYTNWCEAMSTYP---RTYDLIHADS 540 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgl----i~~~~~~~e~~~~yp---~t~Dlih~~~ 540 (626)
..-.+||++|||.|..+..|++.+. +|+.++..+++.+...++-- +.++| +++..++ ..++.|.++.
T Consensus 28 ~~~d~VLEIGpG~G~LT~~L~~~~~---~v~aIE~D~~l~~~l~~~~~~~~n~~ii~---~D~l~~~~~~~~~~~vv~NL 101 (245)
T d1yuba_ 28 KETDTVYEIGTGKGHLTTKLAKISK---QVTSIELDSHLFNLSSEKLKLNTRVTLIH---QDILQFQFPNKQRYKIVGNI 101 (245)
T ss_dssp CSSEEEEECSCCCSSCSHHHHHHSS---EEEESSSSCSSSSSSSCTTTTCSEEEECC---SCCTTTTCCCSSEEEEEEEC
T ss_pred CCCCeEEEECCCccHHHHHHHhhcC---ceeEeeecccchhhhhhhhhhccchhhhh---hhhhccccccceeeeEeeee
Confidence 4478899999999999999999876 67777777778777766531 33444 5555544 4555555543
Q ss_pred c
Q 006905 541 V 541 (626)
Q Consensus 541 ~ 541 (626)
-
T Consensus 102 P 102 (245)
T d1yuba_ 102 P 102 (245)
T ss_dssp C
T ss_pred e
Confidence 3
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=85.80 E-value=0.53 Score=44.33 Aligned_cols=108 Identities=18% Similarity=0.210 Sum_probs=57.3
Q ss_pred HHHHHHhhhhcCCCCCceeEEeccCchhhHhhhhhC------CCeEEEEeccCccCcccHHHH-HHhcccceeccccccC
Q 006905 454 LSYYKTMNNQLGQSGRYRNILDMNAHLGGFAAALID------FPVWVMNVVPAEAKINTLGVI-YERGLVGTYTNWCEAM 526 (626)
Q Consensus 454 v~~y~~~~~~~~~~~~~r~vlD~g~g~G~faa~l~~------~~v~~mnv~~~~~~~~~l~~~-~~rgli~~~~~~~e~~ 526 (626)
+.-|..++..+.+ .+||.+|++.|+-+..+++ .+. .|..+|...+..... .+..-|.++..-+...
T Consensus 69 ~~~~~eli~~~KP----k~ILEIGv~~GgS~~~~a~~l~~~~~~~---kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~ 141 (232)
T d2bm8a1 69 QAVYHDMLWELRP----RTIVELGVYNGGSLAWFRDLTKIMGIDC---QVIGIDRDLSRCQIPASDMENITLHQGDCSDL 141 (232)
T ss_dssp HHHHHHHHHHHCC----SEEEEECCTTSHHHHHHHHHHHHTTCCC---EEEEEESCCTTCCCCGGGCTTEEEEECCSSCS
T ss_pred HHHHHHHHHHhCC----CEEEEECCCCchHHHHHHHHHHhcCCCc---eEEecCcChhhhhhhhccccceeeeecccccH
Confidence 3445566655555 4799999999985554431 222 344445432221110 1111134443222222
Q ss_pred CC---CC-CccceeeeccccccCCCCCCHHHHH--HHhhhhccCCcEEEEEcChH
Q 006905 527 ST---YP-RTYDLIHADSVFSLYKDRCETEDIL--LEMDRILRPEGGVIFRDDVD 575 (626)
Q Consensus 527 ~~---yp-~t~Dlih~~~~f~~~~~~c~~~~~l--~E~dRiLRPgG~~i~~d~~~ 575 (626)
.+ +. ..+|+|+-++. |.. +.++ ++....|+|||++|+-|...
T Consensus 142 ~~~~~l~~~~~dlIfID~~--H~~-----~~v~~~~~~~~lLk~GG~iIveD~i~ 189 (232)
T d2bm8a1 142 TTFEHLREMAHPLIFIDNA--HAN-----TFNIMKWAVDHLLEEGDYFIIEDMIP 189 (232)
T ss_dssp GGGGGGSSSCSSEEEEESS--CSS-----HHHHHHHHHHHTCCTTCEEEECSCHH
T ss_pred HHHHHHHhcCCCEEEEcCC--cch-----HHHHHHHHHhcccCcCCEEEEEcCCc
Confidence 22 22 46888877553 211 2222 25678999999999999853
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=85.47 E-value=0.97 Score=40.17 Aligned_cols=93 Identities=13% Similarity=0.025 Sum_probs=60.4
Q ss_pred CCCEEEEeCCCC-chHHHHHhhC----CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCC------CCCCCeeEE
Q 006905 211 SIRTAIDTGCGV-ASWGAYLLSR----NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLP------YPSRAFDMA 279 (626)
Q Consensus 211 ~~~~VLDIGCGt-G~~a~~La~~----~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lp------f~d~sFDlV 279 (626)
.+.+||=+|||. |.++..+++. .|+++|.++ ...+++++.|....+......... ...+.+|+|
T Consensus 28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~-----~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~v 102 (174)
T d1e3ia2 28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDING-----EKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYS 102 (174)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG-----GGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEE
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccch-----HHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEE
Confidence 355899999986 7777777664 466777755 456788888865444211111110 123568998
Q ss_pred EeccccccccccHHHHHHHHHhcccCC-eEEEEEeCC
Q 006905 280 HCSRCLIPWNQFGGIYLIEVDRVLRPG-GYWILSGPP 315 (626)
Q Consensus 280 ~~~~~l~h~~~~~~~~L~Ei~RvLKPG-G~lvis~pp 315 (626)
+-.-. ....+.+..+.|+|| |.+++.+.+
T Consensus 103 ie~~G-------~~~~~~~a~~~~~~g~G~~v~vG~~ 132 (174)
T d1e3ia2 103 LDCAG-------TAQTLKAAVDCTVLGWGSCTVVGAK 132 (174)
T ss_dssp EESSC-------CHHHHHHHHHTBCTTTCEEEECCCS
T ss_pred EEecc-------cchHHHHHHHHhhcCCeEEEecCCC
Confidence 74321 256789999999996 999998643
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=84.97 E-value=0.23 Score=46.98 Aligned_cols=60 Identities=12% Similarity=0.123 Sum_probs=42.9
Q ss_pred CCceeEEeccCchhhHhhhhhCCCeEEEEeccCccCcccHHHHHHhccc-ceeccccccCCCCC
Q 006905 468 GRYRNILDMNAHLGGFAAALIDFPVWVMNVVPAEAKINTLGVIYERGLV-GTYTNWCEAMSTYP 530 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~~v~~mnv~~~~~~~~~l~~~~~rgli-~~~~~~~e~~~~yp 530 (626)
..-.+||++|||.|.+...|++.+. +|+.++..+++.+...++-.- ..+.-..+++..++
T Consensus 20 ~~~d~VlEIGpG~G~LT~~Ll~~~~---~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~ 80 (235)
T d1qama_ 20 NEHDNIFEIGSGKGHFTLELVQRCN---FVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFK 80 (235)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCC
T ss_pred CCCCeEEEECCCchHHHHHHHhCcC---ceEEEeeccchHHHHHHHhhcccchhhhhhhhhhcc
Confidence 4577899999999999999998876 677788877888887776531 11122235666654
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=81.89 E-value=0.34 Score=42.65 Aligned_cols=91 Identities=16% Similarity=0.220 Sum_probs=54.8
Q ss_pred CCEEEEeCCC-CchHHHHHhhC---CcEEEeCCccchHHHHHHHHHHcCCCeEEEEcccccCCCCCCCeeEEEecccccc
Q 006905 212 IRTAIDTGCG-VASWGAYLLSR---NIITMSFAPRDTHEAQVQFALERGVPALIGVLAAERLPYPSRAFDMAHCSRCLIP 287 (626)
Q Consensus 212 ~~~VLDIGCG-tG~~a~~La~~---~V~avdis~~dls~a~i~~A~erg~~~~~~v~d~~~Lpf~d~sFDlV~~~~~l~h 287 (626)
+.+||=+|+| .|.++..+++. .+++++... ...+++++.|....+...+........+.||.|+-.-.-
T Consensus 31 G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~-----~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~-- 103 (168)
T d1uufa2 31 GKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE-----AKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAA-- 103 (168)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSG-----GGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSS--
T ss_pred CCEEEEeccchHHHHHHHHhhcccccchhhccch-----hHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeec--
Confidence 4588889987 36677766664 345555533 244577777765443211111111223579998853321
Q ss_pred ccccHHHHHHHHHhcccCCeEEEEEeC
Q 006905 288 WNQFGGIYLIEVDRVLRPGGYWILSGP 314 (626)
Q Consensus 288 ~~~~~~~~L~Ei~RvLKPGG~lvis~p 314 (626)
...+....++|+|||.+++.+.
T Consensus 104 -----~~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 104 -----PHNLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp -----CCCHHHHHTTEEEEEEEEECCC
T ss_pred -----chhHHHHHHHHhcCCEEEEecc
Confidence 2235677899999999999753
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=81.00 E-value=2 Score=43.38 Aligned_cols=142 Identities=14% Similarity=0.154 Sum_probs=77.7
Q ss_pred CCceeEEeccCchhhHhhhhhCC----Ce--------EEEEeccCccCcccHHHHHH----hcc----cceeccccccCC
Q 006905 468 GRYRNILDMNAHLGGFAAALIDF----PV--------WVMNVVPAEAKINTLGVIYE----RGL----VGTYTNWCEAMS 527 (626)
Q Consensus 468 ~~~r~vlD~g~g~G~faa~l~~~----~v--------~~mnv~~~~~~~~~l~~~~~----rgl----i~~~~~~~e~~~ 527 (626)
....+|+|-.||+|||-.+..++ .. .-.++.+.|..+.+..++.- +|+ +...+ ...+.
T Consensus 161 ~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~--~d~l~ 238 (425)
T d2okca1 161 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVC--EDSLE 238 (425)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEE--CCTTT
T ss_pred cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeec--Cchhh
Confidence 44578999999999997665432 10 00124455555445444432 222 11222 12233
Q ss_pred CCC-CccceeeeccccccCCCC-------------CCHH-HHHHHhhhhccCCcEEEEEcCh------HHHHHHHHH-HH
Q 006905 528 TYP-RTYDLIHADSVFSLYKDR-------------CETE-DILLEMDRILRPEGGVIFRDDV------DELVKVKRI-ID 585 (626)
Q Consensus 528 ~yp-~t~Dlih~~~~f~~~~~~-------------c~~~-~~l~E~dRiLRPgG~~i~~d~~------~~~~~~~~~-~~ 585 (626)
..+ ..||+|-++-=|+..... -+.+ ..+.-+-..|+|||.+.+--+. ..-.++++. ++
T Consensus 239 ~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~L~~~~~~~~iR~~Ll~ 318 (425)
T d2okca1 239 KEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIRKRLLQ 318 (425)
T ss_dssp SCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHHHH
T ss_pred hhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHHhhhhhhHHHHHHHHHH
Confidence 344 889999998888632211 1122 2667778999999976653221 223456664 44
Q ss_pred hCCCeeEEeecCCCC----CCcceEEEEEec
Q 006905 586 ALKWQSQIVDHEDGP----LEREKLLFAVKL 612 (626)
Q Consensus 586 ~l~w~~~~~~~e~~~----~~~e~~l~~~K~ 612 (626)
...-.. +++.-.+- ..+--|||.+|.
T Consensus 319 ~~~i~a-Ii~LP~~~F~~t~v~t~Ilil~K~ 348 (425)
T d2okca1 319 DFNLHT-ILRLPTGIFYAQGVKANVLFFSKG 348 (425)
T ss_dssp HEEEEE-EEECCSSSSSSTTCCEEEEEEEES
T ss_pred hcchhH-hhcCCcccccCCCCCeEEEEEECC
Confidence 433333 33333222 245679999984
|