Citrus Sinensis ID: 006908

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620------
Protein Sequence
MAVEDEDINPQKKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGIENQGEDQAAGKNENDDSEQESDGDEAQEFHEAAAEAPRKGCSTAFGLPVEDYFLLLDLIDVPYYDIKYQR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccEEccccEEEEEEEccccccccccccEEEEEEEEEEccccEEEEcccccccccccEEEEcccccHHHHHHHHHHccccccEEEEEEccccccccccccccccccccccccEEEEEEEEcccccccccccccEEEEEEEcccccccccccccEEEEEEEEEccccEEccccccccEEEEEccccccccHHHHHcccccccEEEEEEcccccccccccccccccccccEEEHHEEEccEEEEcccccEEEEEEEcccccccccccccccEEEEEEEEEEEccccEEEEcccccccccEEEEEEccccHHHHHHHHHHccccccEEEEEEcccccccccccccccccccEEEEEEEEEccccccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccHHHHHHHccccccccEEcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccEEcccccEEEEEEEccccccccccccEEEEEEEEEEccccEEcccccccccccccEEEEEccccEHHHHHHHHHHcccccEEEEEEcccccccccccccccccccccccEEEEEEEEEEccccccccccccEEEEEEEccccccccccccEEEEEEEEEEccccEEcccccccEEEEEEcccccHHHHHHHHHHcccccEEEEEEccccccccccccccccccEEEEEEEEEEEcccccccccccEEEEEEEcccccccccccccccEEEEEEEEEEccccccEEEcccccccccEEEEEEccccccHHHHHHHHHcccccEEEEEEccHccccccccccccccccEEEEEEEEEEcccccccEEEcccccHHHHHHHHHcccHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHcccccccccccccccccccccccHHHcccccccccccccccccccHHHHHHHHHHccccccEcEccc
Coil and Loop (DISEMBL)
mavededinpqkkkapseddkrrmkivpgslmkavmrpgggdstpsdgdqvayhctvrtldgvivestrseyggkgipirhvLGKSKILLGLlegiptmlkgevsmfkmkpqmhygeddcpvaapstfpkdeelhFEIEMIDFAKAKIIADDFGVVKKVINegqgwetprapyeVKAWISaktgdgklilshregepyfftfgksevpkglemgigtmtREEKAVIYVTsqyltpsplmpvvegceEVHFEVELVHLIQVRDMLGDGRLIKRRIrdgkgefpmdcplhdsllcvhykgmllneeKKVFYdtrvdndgqplefssgeglvpeGFEMCVRLMLpgeialvtcppdyaydkflrpanvpegaHIQWEIELlgfekpkdwtglsfdgIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDfnhvnpqddeegkvfvgkrNLLHLNVAACLLKLGECRKSIEACNKVLdanpahvkgLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKglfdkkpgeisevgienqgedqaagknenddseqesdgdEAQEFHEAAaeaprkgcstafglpveDYFLLLDlidvpyydikyqr
Flexible Loop (DISEMBL)
mavededinpqkkkapseddkrrmkIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVrtldgvivestrseyggkgipirhvLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVInegqgwetprapYEVKAWISAKTGDGKLILSHREGEPYfftfgksevpkGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIqvrdmlgdgrLIKRRIRdgkgefpmdcPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTgnrlfkegkFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKvldanpahvkGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKArkqfkglfdkkpgeisevgienqgedqaagknENDDSEQESDGDEAQEFHEAAAEAPRKGCSTAFGLPVEDYFLLLDLIDVPYYDIKYQR
Low Complexity Region (SEG)
MAVEDEDINPQKKKAPSEDDKRRMKIVPGSLMKAVMRpgggdstpsdgdQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCeevhfevelvhlIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGIENQGEDQAAGKNENDDSEQESDGDeaqefheaaaeaPRKGCSTAFGLPVEDYFLLLDLIDVPYYDIKYQR
Disordered region (IsUnstruct)
**************************************************VAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFE**************************************************************************************************CSTAFGLPVEDYFLLLDLIDVPYYDIKY**
Disordered Region (DISOPRED)
***************************PGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPV**PSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLT************EVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNP******KVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ****KARKQFK***********************************************************FGLPVEDYFLLLDLIDVPYYDIKYQ*
Disordered Region (DISEMBL)
**********************RMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK***************************RKQFKGLFDKKPGEISEVGIENQG**********************************KGCSTAFGLPVEDYFLLLDLIDVPYYDIKYQR
Disordered Region (DISPRO)
*********************RRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVG********************************************AFGLPVEDYFLLLDLIDVPYYDIKYQR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVEDEDINPQKKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGIENQGEDQAAGKNENDDSEQESDGDEAQEFHEAAAEAPRKGCSTAFGLPVEDYFLLLDLIDVPYYDIKYQR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	626	2.2.26 [Sep-21-2011]
Q7DMA9	635	Peptidyl-prolyl cis-trans	yes	no	0.953	0.940	0.738	0.0
Q38931	551	Peptidyl-prolyl cis-trans	no	no	0.806	0.916	0.291	5e-55
Q9FJL3	578	Peptidyl-prolyl cis-trans	no	no	0.833	0.903	0.291	4e-54
Q43207	559	70 kDa peptidyl-prolyl is	N/A	no	0.720	0.806	0.310	1e-52
Q95L05	457	Peptidyl-prolyl cis-trans	N/A	no	0.607	0.831	0.286	2e-32
Q9XSH5	457	Peptidyl-prolyl cis-trans	N/A	no	0.607	0.831	0.284	1e-31
Q9XSI2	457	Peptidyl-prolyl cis-trans	N/A	no	0.607	0.831	0.284	1e-31
Q13451	457	Peptidyl-prolyl cis-trans	yes	no	0.607	0.831	0.281	2e-31
Q9XT11	457	Peptidyl-prolyl cis-trans	N/A	no	0.607	0.831	0.281	2e-31
Q5RF88	457	Peptidyl-prolyl cis-trans	yes	no	0.607	0.831	0.279	3e-31

>sp|Q7DMA9|PAS1_ARATH Peptidyl-prolyl cis-trans isomerase PASTICCINO1 OS=Arabidopsis thaliana GN=PAS1 PE=1 SV=2

 Score =  918 bits (2373), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/607 (73%), Positives = 515/607 (84%), Gaps = 10/607 (1%)

Query: 1   MAVEDE---DINPQKKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTV 57
           MAV D+   +  P+KKK+ +EDDKRR KIVPGSL+KAV+RPGGGDS+P DGDQV YHCTV
Sbjct: 1   MAVGDQTEQNYLPKKKKSETEDDKRRKKIVPGSLLKAVVRPGGGDSSPVDGDQVIYHCTV 60

Query: 58  RTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGE 117
           RTLDGV+VESTRSE GG+G+PIR VLG SK++LGLLEGIPTM KGE++MFKMKP+MHY E
Sbjct: 61  RTLDGVVVESTRSESGGRGVPIRDVLGNSKMILGLLEGIPTMHKGEIAMFKMKPEMHYAE 120

Query: 118 DDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKA 177
            DCPV+AP  FPKD+ELHFEIE++DF+KAKI +DD GV+KK++NEG+GWE+PR PYEVKA
Sbjct: 121 IDCPVSAPENFPKDDELHFEIELLDFSKAKIASDDLGVIKKILNEGEGWESPREPYEVKA 180

Query: 178 WISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSP 237
            ISAK+GDG +I SH E EPYFFTFGKSEVPKGLE+GIGTM R+EKAVIYV  QYLT SP
Sbjct: 181 RISAKSGDGHVIFSHTE-EPYFFTFGKSEVPKGLEIGIGTMARKEKAVIYVRKQYLTESP 239

Query: 238 LMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYK 297
           L+ + +  EEVHFEVELVH IQVRDMLGDGRLIKRRIRDG+GEFPMDCPL DS L VHYK
Sbjct: 240 LLHIDQDLEEVHFEVELVHFIQVRDMLGDGRLIKRRIRDGRGEFPMDCPLQDSRLSVHYK 299

Query: 298 GMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYD 357
           GMLLNEEK VFYD+++DN+ QPLEFSSGEGLVPEGFEMC RLMLPGEIALVTCPPDYAYD
Sbjct: 300 GMLLNEEKTVFYDSKIDNNDQPLEFSSGEGLVPEGFEMCTRLMLPGEIALVTCPPDYAYD 359

Query: 358 KFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELA 417
           KF RP  V EGAH+QWEIELLGFE P+DWTGL+F  IMDEA+KIR TGNRLFKEGKFELA
Sbjct: 360 KFPRPPGVSEGAHVQWEIELLGFETPRDWTGLNFQSIMDEADKIRSTGNRLFKEGKFELA 419

Query: 418 KAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477
           KAKYEKVLR+FNHVNPQD++EGK+F   RN+LHLNVAACLLK+GE RKSIE CNKVL+A 
Sbjct: 420 KAKYEKVLREFNHVNPQDEDEGKIFGDTRNMLHLNVAACLLKMGEWRKSIETCNKVLEAK 479

Query: 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKAR 537
           P HVKGLYRRGMAY+A GE+++A+ DF MM+KVDKSSE DATAAL KLK++ QE ESKAR
Sbjct: 480 PGHVKGLYRRGMAYIAGGEYDDARNDFNMMIKVDKSSEADATAALLKLKQKEQEAESKAR 539

Query: 538 KQFKGLFDKKPGEISEVGIENQGEDQAAGKNENDDSEQESDGDEAQEFHEA---AAEAPR 594
           KQFKGLFDK+PGEI+EVG E + E +     E  D  +++D DE  E   A   + E  R
Sbjct: 540 KQFKGLFDKRPGEITEVGSEIREESKTI---EEVDETKDNDDDETLEEEGATTVSTERKR 596

Query: 595 KGCSTAF 601
           K    A+
Sbjct: 597 KWSEKAW 603

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Essential protein regulating cell division, adhesion and elongation throughout the plant development and embryogenesis. Required for the spatial organization of apical meristems. Involved in the hormonal control of cell division and differentiation mediated by cytokinins and auxin. Regulates the function of NAC089 transcription factor by controlling its targeting to the nucleus upon plant cell division. Interacts with enzymes of the fatty acid elongase complex and favors the generation of very-long-chain fatty acids (VLCFAs) required for polar auxin transport and tissue patterning during plant development.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|Q38931|FKB62_ARATH Peptidyl-prolyl cis-trans isomerase FKBP62 OS=Arabidopsis thaliana GN=FKBP62 PE=1 SV=2

 Score =  216 bits (549), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 155/531 (29%), Positives = 262/531 (49%), Gaps = 26/531 (4%)

Query: 25  KIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLG 84
           K +   L K +++ G G  TP +GD+V  H T   LDG   +S+R     +  P +  LG
Sbjct: 34  KEIQQGLKKKLLKEGEGYETPENGDEVEVHYTGTLLDGTKFDSSRD----RATPFKFTLG 89

Query: 85  KSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA 144
           + +++ G   GI TM KGE ++F +  ++ YGE      +P T P +  L F++E++ + 
Sbjct: 90  QGQVIKGWDIGIKTMKKGENAVFTIPAELAYGES----GSPPTIPANATLQFDVELLKWD 145

Query: 145 KAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGK 204
             K I  D GV KK++  G+ WE P+   EV     AK  DG ++      E   FT   
Sbjct: 146 SVKDICKDGGVFKKILAVGEKWENPKDLDEVLVKFEAKLEDGTVVGKSDGVE---FTVKD 202

Query: 205 SEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEG------CEEVHFEVELVHLI 258
                 L   + TM + EK ++ V  QY       P   G         +   +ELV   
Sbjct: 203 GHFCPALTKAVKTMKKGEKVLLTVKPQYGFGEKGKPASAGEGAVPPNATLEINLELVSWK 262

Query: 259 QVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQ 318
            V ++  D +++K+ +++G G    + P   +++ V   G L  ++  VF       + +
Sbjct: 263 TVSEVTDDNKVVKKVLKEGDG---YERPNEGAVVKVKLIGKL--QDGTVFLKKGHGENEE 317

Query: 319 PLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAY---DKFLRPANVPEGAHIQWEI 375
           P EF + E  V +G +  V  M  GE+ALVT  P+YA+   +     A VP  + + +E+
Sbjct: 318 PFEFKTDEEQVVDGLDRAVMKMKKGEVALVTIDPEYAFGSNESQQELAVVPPNSTVTYEV 377

Query: 376 ELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQD 435
           +LL F+K ++   ++ +  ++ A K +  GN  FK GK+ LA  +YEK ++   +     
Sbjct: 378 DLLTFDKERESWDMNTEEKIEAASKKKEEGNSKFKGGKYSLASKRYEKAVKFIEYDTSFS 437

Query: 436 DEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG 495
           +EE K     +   +LN AAC LKL + +++ + C KVL+    +VK LYRR  AYM L 
Sbjct: 438 EEEKKQAKALKVACNLNDAACKLKLKDYKQAEKLCTKVLELESTNVKALYRRAQAYMELS 497

Query: 496 EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDK 546
           + + A+ D +  +++D ++  +      +LK++ +E   K  K +  +F K
Sbjct: 498 DLDLAEFDVKKALEIDPNNR-EVKLEQKRLKEKMKEFNKKEAKFYGNMFAK 547

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Co-chaperone that positively modulates thermotolerance by interacting with HSP90.1 and increasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9FJL3|FKB65_ARATH Peptidyl-prolyl cis-trans isomerase FKBP65 OS=Arabidopsis thaliana GN=FKBP65 PE=1 SV=1

 Score =  213 bits (542), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 160/548 (29%), Positives = 269/548 (49%), Gaps = 26/548 (4%)

Query: 9   NPQKKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVEST 68
           N +   AP       M+I    L K +++      TP +GD+V  H T   LDG   +S+
Sbjct: 26  NDEADSAPYLKIGEEMEIGKSGLKKKLVKECEKWDTPENGDEVEVHYTGTLLDGTKFDSS 85

Query: 69  RSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTF 128
           R     +G P +  LG+  ++ G   GI TM KGE ++F + P++ YGE      +P T 
Sbjct: 86  RD----RGTPFKFTLGQGHVIKGWDLGIKTMKKGENAIFTIPPELAYGE----TGSPPTI 137

Query: 129 PKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKL 188
           P +  L F++E+I +   K I  D GV KK+I EG+ WE P+   EV     A+  DG +
Sbjct: 138 PPNATLQFDVELIAWRSVKDICGDGGVSKKIIVEGEKWEKPKDLDEVYVKYEARLEDGTI 197

Query: 189 ILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCE-- 246
           +      E   FT  +      L   + TM R EK ++ V  QY       P  +G +  
Sbjct: 198 VGKSDGVE---FTVKEGHFCPALSKAVKTMKRGEKVLLTVKPQYGFGEFGRPASDGLQAA 254

Query: 247 -----EVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLL 301
                 +  ++ELV    V ++  D ++IK+ +++G+G    + P   +++ +   G L 
Sbjct: 255 IPPNATLQIDLELVSWKTVVEVTDDRKVIKKILKEGEG---YERPNEGAIVKLKLIGKL- 310

Query: 302 NEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAY---DK 358
            +   VF     + D +P EF   E  V EG E  V  M  GE+AL+T  P+YA+   + 
Sbjct: 311 QDGTTVFVKKGHEEDEEPFEFKIDEEQVIEGLEKAVMGMKKGEVALITISPEYAFGSSES 370

Query: 359 FLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAK 418
               A +P  + + +E+EL+ F K K+   ++    ++ A K +  GN LFK GK+  A 
Sbjct: 371 KQELAVIPPNSTVYYEVELVSFIKEKESWDMNTQERIEAAGKKKEEGNVLFKAGKYARAS 430

Query: 419 AKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 478
            +YE+ ++   + +  D+EE K     +   +LN AAC LKL + +++ +   KVL+ + 
Sbjct: 431 KRYERGVKYIEYDSTFDEEEKKKSKDLKIACNLNDAACKLKLKDYKEAAKLSTKVLEMDS 490

Query: 479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARK 538
            +VK +YRR  AY+   + + A+ D +  +++D  ++ +      KLK++ +E   K  K
Sbjct: 491 RNVKAMYRRAHAYLETADLDLAELDIKKALEIDPDNK-EVKIEYKKLKEKVKEYNKKDAK 549

Query: 539 QFKGLFDK 546
            +  +  K
Sbjct: 550 FYSNMLSK 557

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Co-chaperone that negatively modulates thermotolerance by interacting with FKBP62 and decreasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family. Plays a positive role in tolerance to intracellular acid stress by maintaining the pH homeostasis.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q43207|FKB70_WHEAT 70 kDa peptidyl-prolyl isomerase OS=Triticum aestivum GN=FKBP70 PE=1 SV=1

 Score =  208 bits (530), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 148/476 (31%), Positives = 242/476 (50%), Gaps = 25/476 (5%)

Query: 44  TPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGE 103
           TP  GD+V  H T   LDG   +S+R     +    +  LG+ +++ G  +GI TM KGE
Sbjct: 56  TPEVGDEVEVHYTGTLLDGKKFDSSRD----RDDTFKFKLGQGQVIKGWDQGIKTMKKGE 111

Query: 104 VSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEG 163
            ++F + P++ YGE      +P T P +  L F++E++ +   + IA D G+ KK++ EG
Sbjct: 112 NALFTIPPELAYGES----GSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEG 167

Query: 164 QGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEK 223
             WE P+ P EV     A+  DG  ++S  EG    FT     +   L   + TM + EK
Sbjct: 168 DKWENPKDPDEVFVKYEARLEDG-TVVSKSEG--VEFTVKDGHLCPALAKAVKTMKKGEK 224

Query: 224 AVIYVTSQYLTPSPLMPV------VEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDG 277
            ++ V  QY       P       V     +  ++ELV    V ++  D +++K+ +++ 
Sbjct: 225 VLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEX 284

Query: 278 KGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCV 337
           +G    + P   +++ V   G L  ++  VF     D + +P EF + E  V EG +  V
Sbjct: 285 EG---YERPNEGAVVTVKITGKL--QDGTVFLKKGHD-EQEPFEFKTDEEAVIEGLDRAV 338

Query: 338 RLMLPGEIALVTCPPDYAY--DKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIM 395
             M  GE+ALVT PP+YAY   +  + A VP  + + +E+EL+ F K K+   L+    +
Sbjct: 339 LNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVKDKESWDLNNSEKI 398

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           + A   +  GN LFK GK+  A  +YEK  +   +     ++E K     +   +LN AA
Sbjct: 399 EAAGTKKEEGNALFKSGKYARASKRYEKAAKFIEYDTSFSEDEKKQSKQLKITCNLNNAA 458

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511
           C LKL + +++ + C KVL+ +  +VK LYRR  AY  L + E A+ D +  +++D
Sbjct: 459 CKLKLKDYKQAEKLCTKVLELDSRNVKALYRRAQAYTQLADLELAEVDIKKALEID 514

PPIases accelerate the folding of proteins during protein synthesis.

Triticum aestivum (taxid: 4565)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q95L05|FKBP5_CHLAE Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Chlorocebus aethiops GN=FKBP5 PE=2 SV=1

 Score =  140 bits (354), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 115/401 (28%), Positives = 195/401 (48%), Gaps = 21/401 (5%)

Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGK-LILSHREGEPYFFTFGKSEVPKG 210
           D GV+K V   G G ETP    +V      K  +GK    SH   EP+ F+ GKS+V K 
Sbjct: 30  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFNSSHDRNEPFVFSLGKSQVIKA 89

Query: 211 LEMGIGTMTREEKAVIYVTSQYLTPSP-LMPVVEGCEEVHFEVELVHLIQVRDMLGDGRL 269
            ++G+ TM + E   +    +Y   S   +P +     + FE+EL+   +  D+L DG +
Sbjct: 90  WDIGVATMKKGEICHLLCKPEYAYGSAGSVPKIPSNATLFFEIELLDF-KGEDLLEDGGI 148

Query: 270 IKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL- 328
           I+R  R G+G      P   + + +H +G      +++F       D + + F+ GEG  
Sbjct: 149 IRRTKRKGEG---YSNPNEGATVEIHLEGRC---GERMF-------DCRDVAFTVGEGED 195

Query: 329 --VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEKPKD 385
             +P G +  +  M   E  ++   P Y + +  +P   +   A + +E+ L  FEK K+
Sbjct: 196 HDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKE 255

Query: 386 WTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGK 445
              +     +++A  ++  G   FK GK+  A  +Y K++          ++E K     
Sbjct: 256 SWEMDTKEKLEQAAIVKEKGTVYFKGGKYMRAVIQYGKIVSWLEMEYGLSEKESKASESF 315

Query: 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
                LN+A C LKL E  K++E C+K L  + A+ KGLYRRG A + + EFE A+ DFE
Sbjct: 316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFE 375

Query: 506 MMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDK 546
            +++V+  ++  A   +S  +K+ +E   + R+ +  +F K
Sbjct: 376 KVLEVNPQNKA-ARLQISMCQKKAKEHNERDRRIYANMFKK 415

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP. Interacts with the glucocorticoid receptor and modulates its response to glucocorticoids.

Chlorocebus aethiops (taxid: 9534)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9XSH5|FKBP5_SAIBB Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Saimiri boliviensis boliviensis GN=FKBP5 PE=1 SV=1

 Score =  138 bits (348), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 114/401 (28%), Positives = 192/401 (47%), Gaps = 21/401 (5%)

Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLI-LSHREGEPYFFTFGKSEVPKG 210
           D GV+K V   G G ETP     V    + K  +GK    SH   EP+ F+ GK +V K 
Sbjct: 30  DRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKA 89

Query: 211 LEMGIGTMTREEKAVIYVTSQY-LTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRL 269
            ++G+ TM + E   +    +Y    +  +P +     + FEVEL+   +  D+L DG +
Sbjct: 90  WDIGVATMKKGEICHLLCKPEYAYGATGSLPKIPSNATLFFEVELLDF-KGEDLLEDGGI 148

Query: 270 IKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL- 328
           I+R  R G+G      P   + + +H +G       +VF       D + + F+ GEG  
Sbjct: 149 IRRTKRRGEG---YSNPNEGARVQIHLEGRCGG---RVF-------DCRDVAFTVGEGED 195

Query: 329 --VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEKPKD 385
             +P G +  +  M   E  ++   P Y + +  +P   +   A + +E+ L  FEK K+
Sbjct: 196 HDIPIGIDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKE 255

Query: 386 WTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGK 445
              +     +++A  ++  G   FK GK+  A  +Y K++          ++E K     
Sbjct: 256 SWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESF 315

Query: 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
                LN+A C LKL E  K++E C+K L  + A+ KGLYRRG A + + EFE A+ DFE
Sbjct: 316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFE 375

Query: 506 MMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDK 546
            +++V+  ++  A   +   +K+ +E   + R+ +  +F K
Sbjct: 376 KVLEVNPQNKA-ARLQIFMCQKKAKEHNERDRRTYANMFKK 415

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP (By similarity). Interacts with the glucocorticoid receptor and modulates its response to glucocorticoids.

Saimiri boliviensis boliviensis (taxid: 39432)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9XSI2|FKBP5_SAGOE Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Saguinus oedipus GN=FKBP5 PE=2 SV=2

 Score =  138 bits (347), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 114/401 (28%), Positives = 194/401 (48%), Gaps = 21/401 (5%)

Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLI-LSHREGEPYFFTFGKSEVPKG 210
           D GV+K V   G G ETP    +V    + K  +GK    SH   EP+ F+ GK +V K 
Sbjct: 30  DRGVLKIVKRVGHGEETPMIGDKVYVHYNGKLSNGKKFDSSHDRNEPFVFSIGKGQVIKA 89

Query: 211 LEMGIGTMTREEKAVIYVTSQY-LTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRL 269
            ++G+ TM + E   +    +Y    +  +P +     + FEVEL++  +  D+L DG +
Sbjct: 90  WDIGVSTMKKGEICHLLCKPEYAYGATGSLPKIPSNATLFFEVELLNF-KGEDLLEDGGI 148

Query: 270 IKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL- 328
           I+R  R G+G      P   + + +H +G       +VF       D + + F+ GEG  
Sbjct: 149 IRRTKRRGEG---YSNPNEGARVQIHLEGRCGG---RVF-------DCRDVAFTVGEGED 195

Query: 329 --VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEKPKD 385
             +P G +  +  M   E  ++   P Y + +  +P   +   A + +E+ L  FEK K+
Sbjct: 196 HDIPIGIDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKE 255

Query: 386 WTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGK 445
              +     +++A  ++  G   FK GK+  A  +Y K++          ++E K     
Sbjct: 256 SWEMDTKEKLEQAAIVKEEGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESF 315

Query: 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
                LN+A C LKL E  K++E C+K L  + A+ KGLYRRG A + + EFE A+ DFE
Sbjct: 316 LLAAFLNLAMCYLKLREYAKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFE 375

Query: 506 MMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDK 546
            +++V+  ++  A   +   +K+ +E   + R+ +  +F K
Sbjct: 376 KVLEVNPQNKA-ARLQIVVCQKKAKEHNERDRRIYANMFKK 415

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP (By similarity). Interacts with the glucocorticoid receptor and modulates its response to glucocorticoids.

Saguinus oedipus (taxid: 9490)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q13451|FKBP5_HUMAN Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Homo sapiens GN=FKBP5 PE=1 SV=2

 Score =  137 bits (346), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 113/401 (28%), Positives = 190/401 (47%), Gaps = 21/401 (5%)

Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLI-LSHREGEPYFFTFGKSEVPKG 210
           D GV+K V   G G ETP    +V      K  +GK    SH   EP+ F+ GK +V K 
Sbjct: 30  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 89

Query: 211 LEMGIGTMTREEKAVIYVTSQYLTPSP-LMPVVEGCEEVHFEVELVHLIQVRDMLGDGRL 269
            ++G+ TM + E   +    +Y   S   +P +     + FE+EL+   +  D+  DG +
Sbjct: 90  WDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF-KGEDLFEDGGI 148

Query: 270 IKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL- 328
           I+R  R G+G      P   + + +H +G          +D R       + F+ GEG  
Sbjct: 149 IRRTKRKGEG---YSNPNEGATVEIHLEGRCGGR----MFDCR------DVAFTVGEGED 195

Query: 329 --VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEKPKD 385
             +P G +  +  M   E  ++   P Y + +  +P   +   A + +E+ L  FEK K+
Sbjct: 196 HDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKE 255

Query: 386 WTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGK 445
              +     +++A  ++  G   FK GK+  A  +Y K++          ++E K     
Sbjct: 256 SWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESF 315

Query: 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
                LN+A C LKL E  K++E C+K L  + A+ KGLYRRG A + + EFE A+ DFE
Sbjct: 316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFE 375

Query: 506 MMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDK 546
            +++V+  ++  A   +S  +K+ +E   + R+ +  +F K
Sbjct: 376 KVLEVNPQNKA-ARLQISMCQKKAKEHNERDRRIYANMFKK 415

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9XT11|FKBP5_AOTNA Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Aotus nancymaae GN=FKBP5 PE=2 SV=2

 Score =  137 bits (345), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 113/401 (28%), Positives = 193/401 (48%), Gaps = 21/401 (5%)

Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLI-LSHREGEPYFFTFGKSEVPKG 210
           D GV+K V   G G ETP    +V    + K  +GK    SH   EP+ F+ GK +V K 
Sbjct: 30  DRGVLKIVKRVGHGEETPMIGDKVYVHYNGKLSNGKKFDSSHDRNEPFVFSIGKGQVIKA 89

Query: 211 LEMGIGTMTREEKAVIYVTSQY-LTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRL 269
            ++G+ TM + E   +    +Y    +  +P +     + FE+EL+   +  D+L DG +
Sbjct: 90  WDIGVATMKKGEICHLLCKPEYAYGATGSLPKIPSNATLFFEIELLDF-KGEDLLEDGGI 148

Query: 270 IKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL- 328
           I+R  R G+G      P   + + +H +G       +VF       D + + F+ GEG  
Sbjct: 149 IRRTKRRGEG---YSNPNEGARVQIHLEGRCGG---RVF-------DCRDVAFTVGEGED 195

Query: 329 --VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEKPKD 385
             +P G +  +  M   E  ++   P Y + +  +P   +   A + +E+ L  FEK K+
Sbjct: 196 HDIPIGIDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKE 255

Query: 386 WTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGK 445
              +     +++A  ++  G   FK GK+  A  +Y K++          ++E K     
Sbjct: 256 SWEMDTKEKLEQAAIVKEKGTLYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESF 315

Query: 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
                LN+A C LKL E  K++E C+K L  + A+ KGLYRRG A + + EFE A+ DFE
Sbjct: 316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFE 375

Query: 506 MMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDK 546
            +++V+  ++  A   +   +K+ +E   + R+ +  +F K
Sbjct: 376 KVLEVNPQNKA-ARLQIFMCQKKAKEHNERDRRIYANMFKK 415

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP (By similarity). Interacts with the glucocorticoid receptor and modulates its response to glucocorticoids.

Aotus nancymaae (taxid: 37293)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q5RF88|FKBP5_PONAB Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Pongo abelii GN=FKBP5 PE=2 SV=1

 Score =  137 bits (345), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 112/401 (27%), Positives = 190/401 (47%), Gaps = 21/401 (5%)

Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLI-LSHREGEPYFFTFGKSEVPKG 210
           D GV+K V   G G ETP    +V      K  +GK    SH   EP+ F+ GK +V K 
Sbjct: 30  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 89

Query: 211 LEMGIGTMTREEKAVIYVTSQYLTPSP-LMPVVEGCEEVHFEVELVHLIQVRDMLGDGRL 269
            ++G+ TM + E   +    +Y   S   +P +     + FE+EL+   +  D+  DG +
Sbjct: 90  WDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF-KGEDLFEDGGI 148

Query: 270 IKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEG-- 327
           I+R  R G+G      P   + + +H +G          +D R       + F+ GEG  
Sbjct: 149 IRRTKRKGEG---YSNPNEGATVEIHLEGRCGGR----MFDCR------DVAFTVGEGED 195

Query: 328 -LVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEKPKD 385
            ++P G +  +  M   E  ++   P Y + +  +P   +   A + +E+ L  FEK K+
Sbjct: 196 HVIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKE 255

Query: 386 WTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGK 445
              +     +++A  ++  G   FK GK+  A  +Y K++          ++E K     
Sbjct: 256 SWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESF 315

Query: 446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
                LN+A C  KL E  K++E C+K L  + A+ KGLYRRG A + + EFE A+ DFE
Sbjct: 316 LLAAFLNLAMCYSKLREYTKAVECCDKALGLDSANGKGLYRRGEAQLLMNEFESAKGDFE 375

Query: 506 MMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDK 546
            +++V+  ++  A   +S  +K+ +E   + R+ +  +F K
Sbjct: 376 KVLEVNPQNKA-ARLQISMCQKKAKEHNERDRRIYANMFKK 415

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP.

Pongo abelii (taxid: 9601)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	626
356504332	635	PREDICTED: peptidyl-prolyl isomerase PAS	0.934	0.921	0.805	0.0
225440540	620	PREDICTED: peptidyl-prolyl isomerase PAS	0.961	0.970	0.776	0.0
255574548	618	fk506 binding protein, putative [Ricinus	0.944	0.956	0.782	0.0
224138922	621	predicted protein [Populus trichocarpa]	0.945	0.953	0.775	0.0
449460353	589	PREDICTED: peptidyl-prolyl cis-trans iso	0.904	0.960	0.783	0.0
3080740	634	pasticcino 1-D [Arabidopsis thaliana]	0.944	0.932	0.745	0.0
18409970	635	peptidyl-prolyl isomerase PASTICCINO1 [A	0.953	0.940	0.738	0.0
312282321	635	unnamed protein product [Thellungiella h	0.888	0.875	0.786	0.0
7630021	634	pasticcino 1 [Arabidopsis thaliana]	0.952	0.940	0.736	0.0
115453163	632	Os03g0367000 [Oryza sativa Japonica Grou	0.921	0.912	0.714	0.0

>gi|356504332|ref|XP_003520950.1| PREDICTED: peptidyl-prolyl isomerase PASTICCINO1-like [Glycine max]

 Score =  976 bits (2523), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/585 (80%), Positives = 519/585 (88%)

Query: 12  KKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSE 71
           KKK PSED+KR+ KIVPGSLMKA+MRPGGGD+ PSDGDQ+ YHCT+RTLDGV+VESTRS+
Sbjct: 14  KKKPPSEDEKRKKKIVPGSLMKALMRPGGGDAGPSDGDQIIYHCTIRTLDGVLVESTRSD 73

Query: 72  YGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKD 131
           YGGKGIPIRHVLGKSK+LLGLLEGIP+MLKGEV+MFKMKPQ+HYGEDDCPV+AP  FPKD
Sbjct: 74  YGGKGIPIRHVLGKSKMLLGLLEGIPSMLKGEVAMFKMKPQLHYGEDDCPVSAPDGFPKD 133

Query: 132 EELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILS 191
           +ELHFEIE+I+F KAK++ DD GVVKKV  EGQGWE+PR PYEVKA ISAKT  GKLI+S
Sbjct: 134 DELHFEIELIEFFKAKVVTDDLGVVKKVECEGQGWESPREPYEVKALISAKTVTGKLIMS 193

Query: 192 HREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFE 251
           H EGEPYFFTFGKSEVPKGLEM IGTM REEKAVIYVTSQYLT SPLMPV+EG +EVHFE
Sbjct: 194 HMEGEPYFFTFGKSEVPKGLEMAIGTMVREEKAVIYVTSQYLTESPLMPVIEGYDEVHFE 253

Query: 252 VELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDT 311
           VELVH IQVRDMLGDGRLIKRRIRDGKG+FPMDCPLHDSLL VHYKG +LNEEK+VFYDT
Sbjct: 254 VELVHFIQVRDMLGDGRLIKRRIRDGKGDFPMDCPLHDSLLRVHYKGTVLNEEKRVFYDT 313

Query: 312 RVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHI 371
           RVDND QPLEF SGEGLVPEGFEM VRLMLPGEIALVTCPPDYAYDKF RP NVPEGAHI
Sbjct: 314 RVDNDSQPLEFCSGEGLVPEGFEMSVRLMLPGEIALVTCPPDYAYDKFPRPLNVPEGAHI 373

Query: 372 QWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV 431
           QWEIELLGFE PKDWTGL F  IM+EAE IR TGNRLFKEGK+ELAKAKYEKVLR+FNHV
Sbjct: 374 QWEIELLGFETPKDWTGLDFKSIMNEAENIRNTGNRLFKEGKYELAKAKYEKVLREFNHV 433

Query: 432 NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAY 491
           NPQDDEEGKVF   RNLLHLNVAAC LKLGEC+KSIE CNKVL+ANPAHVKGLYRRGMAY
Sbjct: 434 NPQDDEEGKVFADTRNLLHLNVAACHLKLGECKKSIETCNKVLEANPAHVKGLYRRGMAY 493

Query: 492 MALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEI 551
           MA G+FEEA+ DF++MMKVDKS+E DATAAL KLK++ Q+VE KARKQFKGLFDKKPGEI
Sbjct: 494 MAAGDFEEARADFKVMMKVDKSTESDATAALQKLKQKEQDVEKKARKQFKGLFDKKPGEI 553

Query: 552 SEVGIENQGEDQAAGKNENDDSEQESDGDEAQEFHEAAAEAPRKG 596
           SE   +  G+   +   ++D+   +SDG  +++ HEA  EA R G
Sbjct: 554 SEAKADVDGDQITSESQKDDEVHGDSDGTNSEDSHEAPPEAQRTG 598

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440540|ref|XP_002273173.1| PREDICTED: peptidyl-prolyl isomerase PASTICCINO1 [Vitis vinifera] gi|297740281|emb|CBI30463.3| unnamed protein product [Vitis vinifera]

 Score =  973 bits (2514), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/605 (77%), Positives = 529/605 (87%), Gaps = 3/605 (0%)

Query: 10  PQKKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTR 69
           PQKKK  SE +KR+ KIVPGSLMKAV+RPGGGDSTPSDGDQV YHCTVRTLDGV+VESTR
Sbjct: 13  PQKKKPLSEAEKRKKKIVPGSLMKAVIRPGGGDSTPSDGDQVIYHCTVRTLDGVVVESTR 72

Query: 70  SEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFP 129
           SE GGKG PIRHVLGKSK++LGLLEG+PTMLKGEV+M KMK ++HYGE +CP+  P  FP
Sbjct: 73  SECGGKGTPIRHVLGKSKMILGLLEGMPTMLKGEVAMLKMKAELHYGEANCPLMVPDNFP 132

Query: 130 KDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLI 189
           KD+ELHFEIEM+DF K K+I+DD GV+KKVINEGQGWE+PR PYEVKAWISAKTG+GK I
Sbjct: 133 KDDELHFEIEMLDFFKVKVISDDLGVLKKVINEGQGWESPREPYEVKAWISAKTGEGKEI 192

Query: 190 LSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVH 249
           LSH +GEPYFFTFGKSEVPKGLEMG GTMTR EKAV+YVT+QY+T SPLMP++EG EEV 
Sbjct: 193 LSHTKGEPYFFTFGKSEVPKGLEMGTGTMTRGEKAVLYVTNQYITQSPLMPIIEGVEEVL 252

Query: 250 FEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFY 309
           FEVELVH IQVRDMLGDGRLIKRRI DG+G+FPMDCPLHDSLL VHYKGMLLNEEK VFY
Sbjct: 253 FEVELVHFIQVRDMLGDGRLIKRRIHDGRGDFPMDCPLHDSLLRVHYKGMLLNEEKTVFY 312

Query: 310 DTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGA 369
           +TRVDN+GQPLEF SGEGLVPEG EMCVRLMLPGEIALVTCPPDYAYDKF RPANVPEGA
Sbjct: 313 NTRVDNNGQPLEFGSGEGLVPEGLEMCVRLMLPGEIALVTCPPDYAYDKFPRPANVPEGA 372

Query: 370 HIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFN 429
           H+QWEIELLGFE PKDWTGL+F+ IMDEA+KIR TGNRLFKEGKFELAKAKYEKVLR+FN
Sbjct: 373 HVQWEIELLGFEMPKDWTGLNFEAIMDEADKIRGTGNRLFKEGKFELAKAKYEKVLREFN 432

Query: 430 HVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGM 489
           HVNPQDDEEGKVF+  RN LHLNVAAC LK+GECRKSIEACNKVLDA+PAHVK LYRRGM
Sbjct: 433 HVNPQDDEEGKVFLNARNSLHLNVAACYLKMGECRKSIEACNKVLDASPAHVKALYRRGM 492

Query: 490 AYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPG 549
           AYM+ G+FEEA+ DF+MMM +DKS EPDATAAL KLK++ QEVE KAR QFKGLFDKKPG
Sbjct: 493 AYMSAGDFEEARNDFKMMMSIDKSCEPDATAALVKLKQKEQEVERKARSQFKGLFDKKPG 552

Query: 550 EISEVGIENQGEDQAAGKNENDDSEQESDGDEAQEFHEAAAEAPRKGCSTAFGLPVEDYF 609
           +I+E G++++G D+  G+NE +D +++SDGD  +EF EA    P  G  +        +F
Sbjct: 553 DIAEAGVDDRG-DKRLGENEKNDDKEDSDGD--KEFQEAEDAPPPMGFLSHLWPTGRRFF 609

Query: 610 LLLDL 614
             L L
Sbjct: 610 TALGL 614

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574548|ref|XP_002528185.1| fk506 binding protein, putative [Ricinus communis] gi|223532397|gb|EEF34192.1| fk506 binding protein, putative [Ricinus communis]

 Score =  944 bits (2439), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/592 (78%), Positives = 522/592 (88%), Gaps = 1/592 (0%)

Query: 5   DEDINPQKKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVI 64
           +ED  P+KKK P+E DKRR KIVPGSLMKA MRPGGGD+ PSD DQV YHCTVRTLDGV+
Sbjct: 4   NEDFAPKKKKEPTESDKRRKKIVPGSLMKAEMRPGGGDAKPSDDDQVIYHCTVRTLDGVV 63

Query: 65  VESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA 124
           V+S++ EYGGKG PIR VLGKSK+LLGLLEG+ TMLKGEV+MFKMKP++HYGED CPV+ 
Sbjct: 64  VQSSKLEYGGKGTPIRQVLGKSKMLLGLLEGLTTMLKGEVAMFKMKPEVHYGEDGCPVSP 123

Query: 125 PSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTG 184
           PS+FPK++ELHFEIEM++F+K K++++D G++K+VINEGQGWE+PR PYEVKA ISAKTG
Sbjct: 124 PSSFPKEDELHFEIEMMNFSKVKVVSEDLGIIKQVINEGQGWESPREPYEVKARISAKTG 183

Query: 185 DGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEG 244
           DGK+ILS  +GEPYFFTFGKSEVPKGLEM IGTMTREEKAVIYVTS+YLT SPLM V EG
Sbjct: 184 DGKVILSCPQGEPYFFTFGKSEVPKGLEMAIGTMTREEKAVIYVTSEYLTESPLMSVAEG 243

Query: 245 CEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEE 304
           C+EVHFEVELVH  QVRDMLGDGRLIKRR+ DG+GEFPMDCPLHDSLL VHYKGMLL+EE
Sbjct: 244 CDEVHFEVELVHFTQVRDMLGDGRLIKRRLCDGRGEFPMDCPLHDSLLRVHYKGMLLDEE 303

Query: 305 KKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPAN 364
            KVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKF RPAN
Sbjct: 304 NKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFQRPAN 363

Query: 365 VPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKV 424
           VPEGAHIQWEIELLGFE PKDWTG+ F  IM EAEKIR TGNRL+KEGKFELAKAKYEKV
Sbjct: 364 VPEGAHIQWEIELLGFEMPKDWTGMDFPTIMGEAEKIRNTGNRLYKEGKFELAKAKYEKV 423

Query: 425 LRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGL 484
           LR+FNHVNPQDDEEGKVFV  RNLL+LN+AAC LK+GEC+KSIE CNKVLDANPAH K L
Sbjct: 424 LREFNHVNPQDDEEGKVFVDTRNLLNLNLAACYLKMGECKKSIEYCNKVLDANPAHAKAL 483

Query: 485 YRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLF 544
           YRRGMAYM  G+FEEA+RDFEMMMK DKSSE DA AAL KLK+++QEVE K RKQFKGLF
Sbjct: 484 YRRGMAYMTDGDFEEARRDFEMMMKGDKSSEADAMAALQKLKQKKQEVERKVRKQFKGLF 543

Query: 545 DKKPGEISEVGIENQGEDQAAGKNENDDSEQESDGDEAQEFHEAAAEAPRKG 596
           DKKPGEI++ GI+   E++   +N+  D +++SD  E +   + AA APR G
Sbjct: 544 DKKPGEIADAGIQG-AEERTVSENQKKDDQEDSDRIEEEALLQDAANAPRGG 594

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138922|ref|XP_002322935.1| predicted protein [Populus trichocarpa] gi|222867565|gb|EEF04696.1| predicted protein [Populus trichocarpa]

 Score =  933 bits (2411), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/601 (77%), Positives = 529/601 (88%), Gaps = 9/601 (1%)

Query: 1   MAVED---EDINPQKK-KAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCT 56
           MA ED   ++  PQKK K P+E +KRR KIVPGSLMKA +RPGGGD+ PSDGDQV YHCT
Sbjct: 1   MAAEDGTAQEYVPQKKNKEPTETEKRRKKIVPGSLMKAEIRPGGGDARPSDGDQVIYHCT 60

Query: 57  VRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYG 116
           VRTL GV+VESTRSEYGG+G PIR VLGKSK+LLGLLEG+PTML GEV+MFKMKPQMHY 
Sbjct: 61  VRTLAGVVVESTRSEYGGEGTPIRQVLGKSKMLLGLLEGLPTMLSGEVAMFKMKPQMHYS 120

Query: 117 EDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVK 176
           E DCPV+ PS+FP+D+ELHFEIEMIDF+K  +++DD GV+KKVI+EGQGWE+PR PYEVK
Sbjct: 121 EADCPVSPPSSFPRDDELHFEIEMIDFSK--VVSDDLGVIKKVIDEGQGWESPREPYEVK 178

Query: 177 AWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPS 236
           AWISAKTGD K+ILS ++GEPYFFT GKSEVPKGLEMGIGTMTREEKAVIYVT+QYLT S
Sbjct: 179 AWISAKTGDDKVILSPKQGEPYFFTIGKSEVPKGLEMGIGTMTREEKAVIYVTNQYLTES 238

Query: 237 PLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHY 296
           PLM VV G EEV FEVEL+H  QVRDMLGDGRLIKRR+RDGKGEFPMDCPL DSLL VHY
Sbjct: 239 PLMSVV-GLEEVQFEVELIHFTQVRDMLGDGRLIKRRLRDGKGEFPMDCPLQDSLLRVHY 297

Query: 297 KGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAY 356
           KGMLLNEEK V  DTR+DNDGQPLEFSSGEGLVPEGFEMCVRLMLPGE+ALVTCPPDYAY
Sbjct: 298 KGMLLNEEKTVVIDTRIDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEVALVTCPPDYAY 357

Query: 357 DKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFEL 416
           DKF RPANVPEGAHI+WEIELLGFE PKDWTGL F G+MDEAEKIR TGNRLFKEGKFEL
Sbjct: 358 DKFTRPANVPEGAHIEWEIELLGFEMPKDWTGLDFQGVMDEAEKIRTTGNRLFKEGKFEL 417

Query: 417 AKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476
           AKAKYEKVLR+FNHVNPQDDEEGKVF+  RNLL+LNVAAC LKLGECRKSIE CNKVL+A
Sbjct: 418 AKAKYEKVLREFNHVNPQDDEEGKVFLNTRNLLNLNVAACHLKLGECRKSIETCNKVLEA 477

Query: 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAA-LSKLKKQRQEVESK 535
           NPAHVK LYRRGMAYM +G+FEEA+ DFEMM+KVDKSSE DATAA     +KQ+Q+VE K
Sbjct: 478 NPAHVKALYRRGMAYMEVGDFEEARSDFEMMLKVDKSSELDATAALKKLKQKQQQDVEKK 537

Query: 536 ARKQFKGLFDKKPGEISEVGIENQGEDQAAGKNENDDSEQESDGDEAQEFHEAAAEAPRK 595
           AR+QFKGLFDKKPGEI++ G +++GE+Q+  +N+ +  +++S+G + ++  + A E PR+
Sbjct: 538 ARRQFKGLFDKKPGEIADAGTDDRGEEQSTSENQKNGDQEDSNGTDTEDVEDVADE-PRE 596

Query: 596 G 596
           G
Sbjct: 597 G 597

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460353|ref|XP_004147910.1| PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1-like [Cucumis sativus] gi|449519521|ref|XP_004166783.1| PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1-like [Cucumis sativus]

 Score =  925 bits (2391), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/569 (78%), Positives = 499/569 (87%), Gaps = 3/569 (0%)

Query: 32  MKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLG 91
           MKAVMRPGGG++TPS+GDQV YHCT+RTLDG +V+STRSE+GGKGIP RHVLGKSK++LG
Sbjct: 1   MKAVMRPGGGEATPSEGDQVVYHCTIRTLDGFVVQSTRSEFGGKGIPTRHVLGKSKMILG 60

Query: 92  LLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIAD 151
           LLEGIPTMLKGEV+MFKMKPQMHYGE+DCPV+  S+FPK +ELHFEIEMIDF KAK++ +
Sbjct: 61  LLEGIPTMLKGEVAMFKMKPQMHYGEEDCPVSVSSSFPKGDELHFEIEMIDFFKAKVVCN 120

Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGL 211
           DFGVVKKVI+EGQGWE+PR PYE+KAWISA+TGDGK+ILSH  GEPYFFTFGKSEVPKGL
Sbjct: 121 DFGVVKKVISEGQGWESPREPYEIKAWISARTGDGKVILSHATGEPYFFTFGKSEVPKGL 180

Query: 212 EMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIK 271
           EMGIGTMTR EKAVI+VTSQYLTPSPL+ V +G EEV FEVELVH IQVRDMLGDGRLIK
Sbjct: 181 EMGIGTMTRGEKAVIFVTSQYLTPSPLITVEDGVEEVQFEVELVHFIQVRDMLGDGRLIK 240

Query: 272 RRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPE 331
           RRI DGKG+FPMDCPLHDSLL VHYK ML+ E+KK FYDT+VDNDGQPLEF SGEGLVPE
Sbjct: 241 RRIHDGKGDFPMDCPLHDSLLRVHYKAMLV-EDKKAFYDTKVDNDGQPLEFRSGEGLVPE 299

Query: 332 GFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSF 391
           GFEM VRLMLPGEIALVTCPPDYAYDKF RPANVP GAH+QWEIELLGFE PK+W GL F
Sbjct: 300 GFEMSVRLMLPGEIALVTCPPDYAYDKFPRPANVPAGAHVQWEIELLGFEMPKEWDGLDF 359

Query: 392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHL 451
             IMDEAEKIR TGNRLFKEGKFELAKAKYEKVLR+FNHVNPQDDEEGKVF   RN+L+L
Sbjct: 360 KSIMDEAEKIRNTGNRLFKEGKFELAKAKYEKVLREFNHVNPQDDEEGKVFSNTRNMLNL 419

Query: 452 NVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511
           NVAAC LKLGECRKSIE CNKV++ANPA+ K LYRRGMAYM LG+FEEA+ DFEMM K D
Sbjct: 420 NVAACYLKLGECRKSIETCNKVIEANPANAKALYRRGMAYMTLGDFEEARNDFEMMKKAD 479

Query: 512 KSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGIENQGEDQAAGKNEND 571
           KSSE DATAAL KLK++ QEVE KARKQFKGLFDKKPGEISEVG  ++ E  +    EN 
Sbjct: 480 KSSETDATAALLKLKQKEQEVEKKARKQFKGLFDKKPGEISEVGDGDREERNSGEIQENS 539

Query: 572 DSEQESDGDEAQEFHEAAA--EAPRKGCS 598
           D  ++++ D++ EF + +   + PR   S
Sbjct: 540 DKLEQNEDDKSSEFSDDSTTDDQPRDWLS 568

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3080740|gb|AAC39445.1| pasticcino 1-D [Arabidopsis thaliana]

 Score =  920 bits (2379), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/598 (74%), Positives = 511/598 (85%), Gaps = 7/598 (1%)

Query: 1   MAVEDE---DINPQKKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTV 57
           MAV D+   +  P+KKK+ +EDDKRR KIVPGSL+KAV+RPGGGDS+P DGDQV YHCTV
Sbjct: 1   MAVGDQTEQNYLPKKKKSETEDDKRRKKIVPGSLLKAVVRPGGGDSSPVDGDQVIYHCTV 60

Query: 58  RTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGE 117
           RTLDGV+VESTRSE GG+G+PIR VLGKSK++LGLLEGIPTM KGE++MFKMKP+MHY E
Sbjct: 61  RTLDGVVVESTRSESGGRGVPIRDVLGKSKMILGLLEGIPTMHKGEIAMFKMKPEMHYAE 120

Query: 118 DDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKA 177
            DCPV+AP  FPKD+ELHFEIE++DF+KAKI +DD GV+KK++NEG+GWE+PR PYEVKA
Sbjct: 121 IDCPVSAPENFPKDDELHFEIELLDFSKAKIASDDLGVIKKILNEGEGWESPREPYEVKA 180

Query: 178 WISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSP 237
            ISAK+GDG +I SH E EPYFFTFGKSEVPKGLE+GIGTM R+EKAVIYV  QYLT SP
Sbjct: 181 RISAKSGDGHVIFSHTE-EPYFFTFGKSEVPKGLEIGIGTMARKEKAVIYVRKQYLTESP 239

Query: 238 LMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYK 297
           L+ + +  EEVHFEVELVH IQVRDMLGDGRLIKRRIRDG+GEFPMDCPL DS L VHYK
Sbjct: 240 LLHIDQDLEEVHFEVELVHFIQVRDMLGDGRLIKRRIRDGRGEFPMDCPLQDSRLSVHYK 299

Query: 298 GMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYD 357
           GMLLNEEK VFYD+++DN+ QPLEFSSGEGLVPEGFEMC RLMLPGEIALVTCPPDYAYD
Sbjct: 300 GMLLNEEKTVFYDSKIDNNDQPLEFSSGEGLVPEGFEMCTRLMLPGEIALVTCPPDYAYD 359

Query: 358 KFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELA 417
           KF RP  V EGAH+QWEIELLGFE P+DWTGL+F  IMDEA+KIR TGNRLFKEGKFELA
Sbjct: 360 KFPRPPGVSEGAHVQWEIELLGFETPRDWTGLNFQSIMDEADKIRSTGNRLFKEGKFELA 419

Query: 418 KAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477
           KAKYEKVLR+FNHVNPQD++EGK+F   RN+LHLNVAACLLK+GE RKSIE CNKVL+A 
Sbjct: 420 KAKYEKVLREFNHVNPQDEDEGKIFGDTRNMLHLNVAACLLKMGEWRKSIETCNKVLEAK 479

Query: 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKAR 537
           P HVKGLYRRGMAY+A GE+++A+ DF MM+KVDKSSE DATAAL KLK++ QE ESKAR
Sbjct: 480 PGHVKGLYRRGMAYIAGGEYDDARNDFNMMIKVDKSSEADATAALLKLKQKEQEAESKAR 539

Query: 538 KQFKGLFDKKPGEISEVGIENQGEDQAAGKNENDDSEQESDGDEAQEFHEAAAEAPRK 595
           KQFKGLFDK+PGEI+EVG E + E +     E  D  +++D DE  E         RK
Sbjct: 540 KQFKGLFDKRPGEITEVGSEIREESKTI---EEVDETKDNDDDETLEEGATTVSTERK 594

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18409970|ref|NP_566993.1| peptidyl-prolyl isomerase PASTICCINO1 [Arabidopsis thaliana] gi|73921623|sp|Q7DMA9.2|PAS1_ARATH RecName: Full=Peptidyl-prolyl cis-trans isomerase PASTICCINO1; AltName: Full=70 kDa peptidyl-prolyl isomerase; AltName: Full=FK506-binding protein 72; Short=AtFKBP72; AltName: Full=Immunophilin FKBP72; AltName: Full=Peptidyl-prolyl cis-trans isomerase FKBP72; Short=PPIase FKBP72; AltName: Full=Rotamase gi|15810453|gb|AAL07114.1| putative pasticcino 1 protein [Arabidopsis thaliana] gi|20465605|gb|AAM20285.1| putative pasticcino 1 protein [Arabidopsis thaliana] gi|332645653|gb|AEE79174.1| peptidyl-prolyl isomerase PASTICCINO1 [Arabidopsis thaliana]

 Score =  918 bits (2373), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/607 (73%), Positives = 515/607 (84%), Gaps = 10/607 (1%)

Query: 1   MAVEDE---DINPQKKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTV 57
           MAV D+   +  P+KKK+ +EDDKRR KIVPGSL+KAV+RPGGGDS+P DGDQV YHCTV
Sbjct: 1   MAVGDQTEQNYLPKKKKSETEDDKRRKKIVPGSLLKAVVRPGGGDSSPVDGDQVIYHCTV 60

Query: 58  RTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGE 117
           RTLDGV+VESTRSE GG+G+PIR VLG SK++LGLLEGIPTM KGE++MFKMKP+MHY E
Sbjct: 61  RTLDGVVVESTRSESGGRGVPIRDVLGNSKMILGLLEGIPTMHKGEIAMFKMKPEMHYAE 120

Query: 118 DDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKA 177
            DCPV+AP  FPKD+ELHFEIE++DF+KAKI +DD GV+KK++NEG+GWE+PR PYEVKA
Sbjct: 121 IDCPVSAPENFPKDDELHFEIELLDFSKAKIASDDLGVIKKILNEGEGWESPREPYEVKA 180

Query: 178 WISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSP 237
            ISAK+GDG +I SH E EPYFFTFGKSEVPKGLE+GIGTM R+EKAVIYV  QYLT SP
Sbjct: 181 RISAKSGDGHVIFSHTE-EPYFFTFGKSEVPKGLEIGIGTMARKEKAVIYVRKQYLTESP 239

Query: 238 LMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYK 297
           L+ + +  EEVHFEVELVH IQVRDMLGDGRLIKRRIRDG+GEFPMDCPL DS L VHYK
Sbjct: 240 LLHIDQDLEEVHFEVELVHFIQVRDMLGDGRLIKRRIRDGRGEFPMDCPLQDSRLSVHYK 299

Query: 298 GMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYD 357
           GMLLNEEK VFYD+++DN+ QPLEFSSGEGLVPEGFEMC RLMLPGEIALVTCPPDYAYD
Sbjct: 300 GMLLNEEKTVFYDSKIDNNDQPLEFSSGEGLVPEGFEMCTRLMLPGEIALVTCPPDYAYD 359

Query: 358 KFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELA 417
           KF RP  V EGAH+QWEIELLGFE P+DWTGL+F  IMDEA+KIR TGNRLFKEGKFELA
Sbjct: 360 KFPRPPGVSEGAHVQWEIELLGFETPRDWTGLNFQSIMDEADKIRSTGNRLFKEGKFELA 419

Query: 418 KAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477
           KAKYEKVLR+FNHVNPQD++EGK+F   RN+LHLNVAACLLK+GE RKSIE CNKVL+A 
Sbjct: 420 KAKYEKVLREFNHVNPQDEDEGKIFGDTRNMLHLNVAACLLKMGEWRKSIETCNKVLEAK 479

Query: 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKAR 537
           P HVKGLYRRGMAY+A GE+++A+ DF MM+KVDKSSE DATAAL KLK++ QE ESKAR
Sbjct: 480 PGHVKGLYRRGMAYIAGGEYDDARNDFNMMIKVDKSSEADATAALLKLKQKEQEAESKAR 539

Query: 538 KQFKGLFDKKPGEISEVGIENQGEDQAAGKNENDDSEQESDGDEAQEFHEA---AAEAPR 594
           KQFKGLFDK+PGEI+EVG E + E +     E  D  +++D DE  E   A   + E  R
Sbjct: 540 KQFKGLFDKRPGEITEVGSEIREESKTI---EEVDETKDNDDDETLEEEGATTVSTERKR 596

Query: 595 KGCSTAF 601
           K    A+
Sbjct: 597 KWSEKAW 603

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282321|dbj|BAJ34026.1| unnamed protein product [Thellungiella halophila]

 Score =  917 bits (2369), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/557 (78%), Positives = 493/557 (88%), Gaps = 1/557 (0%)

Query: 1   MAVEDEDINPQKKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTL 60
           M   +++  P+KKK+ +ED+KRR KIVPGSL+KAV+RPGGG+S+P DGDQV YHCTVRTL
Sbjct: 1   MDATEQNYLPKKKKSETEDEKRRKKIVPGSLLKAVVRPGGGESSPVDGDQVVYHCTVRTL 60

Query: 61  DGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDC 120
           DGV+VESTRSE GG+G+PIR VLGKSK++LGLLEGIPTM KGE++MFKMKP+MHY E DC
Sbjct: 61  DGVVVESTRSECGGRGVPIRDVLGKSKMILGLLEGIPTMHKGEIAMFKMKPEMHYAEKDC 120

Query: 121 PVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWIS 180
           PV+A   FPKD+ELHFEIE++DFAKAKI +DD GVVKK++ EG+GWE+PR PYEVKA IS
Sbjct: 121 PVSAQVNFPKDDELHFEIELLDFAKAKIASDDLGVVKKILIEGEGWESPREPYEVKARIS 180

Query: 181 AKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMP 240
           AK+GDG++I SH E EPYFFTFGKSEVPKGLE+GIGTM R+EKAVIYV  QYLT SPLM 
Sbjct: 181 AKSGDGQVIFSHTE-EPYFFTFGKSEVPKGLEIGIGTMARKEKAVIYVRKQYLTESPLMH 239

Query: 241 VVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGML 300
           +V+  EEVHFEVELVH IQVRDMLGDGRLIKRRIRDG+GEFPMDCPL DS L VHYKGML
Sbjct: 240 IVQDLEEVHFEVELVHFIQVRDMLGDGRLIKRRIRDGRGEFPMDCPLQDSRLSVHYKGML 299

Query: 301 LNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFL 360
           LNEEK VFYD+R+DN+ QPLEFSSGEGLVPEGFEMC RLMLPGE+ALV+CPPDYAYDKF 
Sbjct: 300 LNEEKTVFYDSRIDNNDQPLEFSSGEGLVPEGFEMCTRLMLPGELALVSCPPDYAYDKFP 359

Query: 361 RPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAK 420
           RP  VPEGAHIQWEIELLGFE P+DWTGL+F  IM+EAE IR TGNRLFKEGKFELAKAK
Sbjct: 360 RPPGVPEGAHIQWEIELLGFETPRDWTGLNFQSIMNEAENIRSTGNRLFKEGKFELAKAK 419

Query: 421 YEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480
           YEKVLR+FNHVNPQDDEEGKVF   RN+LHLNVAACLLK GE RKS+E CNKVL+A P H
Sbjct: 420 YEKVLREFNHVNPQDDEEGKVFGDARNMLHLNVAACLLKTGEWRKSVETCNKVLEAKPGH 479

Query: 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQF 540
           VKGLYRRGMAYMA  E+E+A+ DF MM+KVDKSSE DATAAL KLK++ QE ESKARKQF
Sbjct: 480 VKGLYRRGMAYMAGAEYEDARNDFNMMIKVDKSSESDATAALLKLKQKEQEAESKARKQF 539

Query: 541 KGLFDKKPGEISEVGIE 557
           KGLFDKKPGEI+EVG E
Sbjct: 540 KGLFDKKPGEITEVGSE 556

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7630021|emb|CAB88363.1| pasticcino 1 [Arabidopsis thaliana]

 Score =  913 bits (2359), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/607 (73%), Positives = 515/607 (84%), Gaps = 11/607 (1%)

Query: 1   MAVEDE---DINPQKKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTV 57
           MAV D+   +  P+KKK+ +EDDKR+ KIVPGSL+KAV+RPGGGDS+P DGDQV YHCTV
Sbjct: 1   MAVGDQTEQNYLPKKKKSETEDDKRK-KIVPGSLLKAVVRPGGGDSSPVDGDQVIYHCTV 59

Query: 58  RTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGE 117
           RTLDGV+VESTRSE GG+G+PIR VLG SK++LGLLEGIPTM KGE++MFKMKP+MHY E
Sbjct: 60  RTLDGVVVESTRSESGGRGVPIRDVLGNSKMILGLLEGIPTMHKGEIAMFKMKPEMHYAE 119

Query: 118 DDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKA 177
            DCPV+AP  FPKD+ELHFEIE++DF+KAKI +DD GV+KK++NEG+GWE+PR PYEVKA
Sbjct: 120 IDCPVSAPENFPKDDELHFEIELLDFSKAKIASDDLGVIKKILNEGEGWESPREPYEVKA 179

Query: 178 WISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSP 237
            ISAK+GDG +I SH E EPYFFTFGKSEVPKGLE+GIGTM R+EKAVIYV  QYLT SP
Sbjct: 180 RISAKSGDGHVIFSHTE-EPYFFTFGKSEVPKGLEIGIGTMARKEKAVIYVRKQYLTESP 238

Query: 238 LMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYK 297
           L+ + +  EEVHFEVELVH IQVRDMLGDGRLIKRRIRDG+GEFPMDCPL DS L VHYK
Sbjct: 239 LLHIDQDLEEVHFEVELVHFIQVRDMLGDGRLIKRRIRDGRGEFPMDCPLQDSRLSVHYK 298

Query: 298 GMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYD 357
           GMLLNEEK VFYD+++DN+ QPLEFSSGEGLVPEGFEMC RLMLPGEIALVTCPPDYAYD
Sbjct: 299 GMLLNEEKTVFYDSKIDNNDQPLEFSSGEGLVPEGFEMCTRLMLPGEIALVTCPPDYAYD 358

Query: 358 KFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELA 417
           KF RP  V EGAH+QWEIELLGFE P+DWTGL+F  IMDEA+KIR TGNRLFKEGKFELA
Sbjct: 359 KFPRPPGVSEGAHVQWEIELLGFETPRDWTGLNFQSIMDEADKIRSTGNRLFKEGKFELA 418

Query: 418 KAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477
           KAKYEKVLR+FNHVNPQD++EGK+F   RN+LHLNVAACLLK+GE RKSIE CNKVL+A 
Sbjct: 419 KAKYEKVLREFNHVNPQDEDEGKIFGDTRNMLHLNVAACLLKMGEWRKSIETCNKVLEAK 478

Query: 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKAR 537
           P HVKGLYRRGMAY+A GE+++A+ DF MM+KVDKSSE DATAAL KLK++ QE ESKAR
Sbjct: 479 PGHVKGLYRRGMAYIAGGEYDDARNDFNMMIKVDKSSEADATAALLKLKQKEQEAESKAR 538

Query: 538 KQFKGLFDKKPGEISEVGIENQGEDQAAGKNENDDSEQESDGDEAQEFHEA---AAEAPR 594
           KQFKGLFDK+PGEI+EVG E + E +     E  D  +++D DE  E   A   + E  R
Sbjct: 539 KQFKGLFDKRPGEITEVGSEIREESKTI---EEVDETKDNDDDETLEEEGATTVSTERKR 595

Query: 595 KGCSTAF 601
           K    A+
Sbjct: 596 KWSEKAW 602

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115453163|ref|NP_001050182.1| Os03g0367000 [Oryza sativa Japonica Group] gi|108708340|gb|ABF96135.1| Peptidylprolyl isomerase PASTICCINO1, putative, expressed [Oryza sativa Japonica Group] gi|113548653|dbj|BAF12096.1| Os03g0367000 [Oryza sativa Japonica Group] gi|215768523|dbj|BAH00752.1| unnamed protein product [Oryza sativa Japonica Group] gi|218192902|gb|EEC75329.1| hypothetical protein OsI_11710 [Oryza sativa Indica Group] gi|222624979|gb|EEE59111.1| hypothetical protein OsJ_10973 [Oryza sativa Japonica Group]

 Score =  868 bits (2242), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/584 (71%), Positives = 484/584 (82%), Gaps = 7/584 (1%)

Query: 18  EDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGI 77
           E +KRR K+ PGSLMK ++R GGGD+TP++GDQV  HCT RT+DG+IV STR E+GGKG+
Sbjct: 26  EAEKRRKKLTPGSLMKGLIRSGGGDATPAEGDQVIVHCTTRTIDGIIVNSTRREHGGKGV 85

Query: 78  PIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFE 137
           P+R VLGKSK++LG  EG PTML GE++MFKMKPQ+HY E+DCPV AP  FPKD+EL FE
Sbjct: 86  PLRFVLGKSKMILGFAEGFPTMLMGEIAMFKMKPQIHYAEEDCPVTAPDGFPKDDELQFE 145

Query: 138 IEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEP 197
           IEM+DF KAKI+A+D GVVKK+I+EG+GWETPR PYEV A I+A+TGDGK +L  +E EP
Sbjct: 146 IEMLDFFKAKIVAEDLGVVKKIIDEGKGWETPREPYEVTARITARTGDGKELLPSKE-EP 204

Query: 198 YFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHL 257
           YFFT GKSEVPKGLEMGIG+M REEKA+IYVTS YLT S L+P +EG EEV FEVELV  
Sbjct: 205 YFFTIGKSEVPKGLEMGIGSMAREEKAIIYVTSAYLTNSSLIPQLEGIEEVQFEVELVQF 264

Query: 258 IQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDG 317
           +QVRDMLGDGRLIKRR+ DGKGEFPMDCPLHDSLL VHYKGMLL+E K +FYDTRVDN G
Sbjct: 265 VQVRDMLGDGRLIKRRVVDGKGEFPMDCPLHDSLLRVHYKGMLLDEPKSIFYDTRVDNHG 324

Query: 318 QPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIEL 377
           +PLEF SGEGLVPEGFEMCVRLMLPGE ++VTCPPD+AYDKF RPANVPEGAH+QWEIEL
Sbjct: 325 EPLEFCSGEGLVPEGFEMCVRLMLPGEKSIVTCPPDFAYDKFPRPANVPEGAHVQWEIEL 384

Query: 378 LGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE 437
           LGFE PKDWTG +F  IMD+AEKI+ TGNRLFKEGKFELAKAKYEKVLR++NHV+PQDD+
Sbjct: 385 LGFEMPKDWTGFTFQEIMDDAEKIKTTGNRLFKEGKFELAKAKYEKVLREYNHVHPQDDD 444

Query: 438 EGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF 497
           EGK+F   R+ LHLNVAAC  K+GE RKSI+ CNKVL+ANP HVK LYRRGM+YM LG+F
Sbjct: 445 EGKIFANSRSSLHLNVAACYQKMGEYRKSIDTCNKVLEANPVHVKALYRRGMSYMLLGDF 504

Query: 498 EEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGIE 557
           ++A++DFE M+ VDKSSEPDATAAL+KLK+  QE E KARKQFKGLFDKKPGEISEVG+ 
Sbjct: 505 DDAKKDFEKMIAVDKSSEPDATAALNKLKQTIQETEKKARKQFKGLFDKKPGEISEVGV- 563

Query: 558 NQGEDQAAGKNENDDSEQESDGDEAQEFHEAAAEAPRKGCSTAF 601
             GE +    +     E  S  D   +  EA    PR     AF
Sbjct: 564 --GEPEGNKTDTTGSGEAASTADRDTDAKEA---IPRADSGLAF 602

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	626
TAIR|locus:2084435	635	PAS1 "AT3G54010" [Arabidopsis	0.923	0.910	0.720	4.8e-229
UNIPROTKB|Q10KX6	632	Os03g0367000 "Peptidylprolyl i	0.905	0.897	0.694	4.9e-220
UNIPROTKB|Q6K5Q1	682	P0579G08.8 "Putative peptidylp	0.793	0.728	0.293	2.7e-52
UNIPROTKB|Q9XFE4	585	OSJNBa0091C07.4 "OSJNBa0091C07	0.755	0.808	0.311	5.6e-52
UNIPROTKB|Q7F1F2	580	OJ1191_A10.119 "cDNA clone:J03	0.795	0.858	0.296	7.2e-52
TAIR|locus:2152561	578	ROF2 "AT5G48570" [Arabidopsis	0.840	0.910	0.279	3.1e-51
TAIR|locus:2090265	562	ROF1 "AT3G25230" [Arabidopsis	0.806	0.898	0.274	6.5e-51
UNIPROTKB|F1NP08	464	FKBP4 "Uncharacterized protein	0.643	0.868	0.277	9.3e-34
UNIPROTKB|Q95L05	457	FKBP5 "Peptidyl-prolyl cis-tra	0.653	0.894	0.268	1.2e-33
UNIPROTKB|F1NIM4	442	FKBP4 "Uncharacterized protein	0.607	0.859	0.281	4.4e-33

TAIR|locus:2084435 PAS1 "AT3G54010" [Arabidopsis thaliana (taxid:3702)]

 Score = 2210 (783.0 bits), Expect = 4.8e-229, P = 4.8e-229
 Identities = 423/587 (72%), Positives = 487/587 (82%)

Query:     1 MAVEDE-DIN--PQKKKAPSEDDKRRMKIVPGSLMKAVMRXXXXXXXXXXXXQVAYHCTV 57
             MAV D+ + N  P+KKK+ +EDDKRR KIVPGSL+KAV+R            QV YHCTV
Sbjct:     1 MAVGDQTEQNYLPKKKKSETEDDKRRKKIVPGSLLKAVVRPGGGDSSPVDGDQVIYHCTV 60

Query:    58 RTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGE 117
             RTLDGV+VESTRSE GG+G+PIR VLG SK++LGLLEGIPTM KGE++MFKMKP+MHY E
Sbjct:    61 RTLDGVVVESTRSESGGRGVPIRDVLGNSKMILGLLEGIPTMHKGEIAMFKMKPEMHYAE 120

Query:   118 DDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKA 177
              DCPV+AP  FPKD+ELHFEIE++DF+KAKI +DD GV+KK++NEG+GWE+PR PYEVKA
Sbjct:   121 IDCPVSAPENFPKDDELHFEIELLDFSKAKIASDDLGVIKKILNEGEGWESPREPYEVKA 180

Query:   178 WISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSP 237
              ISAK+GDG +I SH E EPYFFTFGKSEVPKGLE+GIGTM R+EKAVIYV  QYLT SP
Sbjct:   181 RISAKSGDGHVIFSHTE-EPYFFTFGKSEVPKGLEIGIGTMARKEKAVIYVRKQYLTESP 239

Query:   238 LMPVVEGCXXXXXXXXXXXXIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYK 297
             L+ + +              IQVRDMLGDGRLIKRRIRDG+GEFPMDCPL DS L VHYK
Sbjct:   240 LLHIDQDLEEVHFEVELVHFIQVRDMLGDGRLIKRRIRDGRGEFPMDCPLQDSRLSVHYK 299

Query:   298 GMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYD 357
             GMLLNEEK VFYD+++DN+ QPLEFSSGEGLVPEGFEMC RLMLPGEIALVTCPPDYAYD
Sbjct:   300 GMLLNEEKTVFYDSKIDNNDQPLEFSSGEGLVPEGFEMCTRLMLPGEIALVTCPPDYAYD 359

Query:   358 KFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELA 417
             KF RP  V EGAH+QWEIELLGFE P+DWTGL+F  IMDEA+KIR TGNRLFKEGKFELA
Sbjct:   360 KFPRPPGVSEGAHVQWEIELLGFETPRDWTGLNFQSIMDEADKIRSTGNRLFKEGKFELA 419

Query:   418 KAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477
             KAKYEKVLR+FNHVNPQD++EGK+F   RN+LHLNVAACLLK+GE RKSIE CNKVL+A 
Sbjct:   420 KAKYEKVLREFNHVNPQDEDEGKIFGDTRNMLHLNVAACLLKMGEWRKSIETCNKVLEAK 479

Query:   478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKAR 537
             P HVKGLYRRGMAY+A GE+++A+ DF MM+KVDKSSE DATAAL KLK++ QE ESKAR
Sbjct:   480 PGHVKGLYRRGMAYIAGGEYDDARNDFNMMIKVDKSSEADATAALLKLKQKEQEAESKAR 539

Query:   538 KQFKGLFDKKPGEISEVGIENQGEDQAAGK----NENDDSEQ-ESDG 579
             KQFKGLFDK+PGEI+EVG E + E +   +     +NDD E  E +G
Sbjct:   540 KQFKGLFDKRPGEITEVGSEIREESKTIEEVDETKDNDDDETLEEEG 586

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006457 "protein folding" evidence=IEA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009880 "embryonic pattern specification" evidence=IMP

GO:0030010 "establishment of cell polarity" evidence=IMP

GO:0042761 "very long-chain fatty acid biosynthetic process" evidence=IMP

GO:0048527 "lateral root development" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0009735 "response to cytokinin stimulus" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0030154 "cell differentiation" evidence=IMP

GO:0048364 "root development" evidence=IMP

UNIPROTKB|Q10KX6 Os03g0367000 "Peptidylprolyl isomerase PASTICCINO1, putative, expressed" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 2125 (753.1 bits), Expect = 4.9e-220, P = 4.9e-220
 Identities = 398/573 (69%), Positives = 470/573 (82%)

Query:    11 QKKKAPSEDD--KRRMKIVPGSLMKAVMRXXXXXXXXXXXXQVAYHCTVRTLDGVIVEST 68
             +KKK+P+E++  KRR K+ PGSLMK ++R            QV  HCT RT+DG+IV ST
Sbjct:    17 KKKKSPTEEEAEKRRKKLTPGSLMKGLIRSGGGDATPAEGDQVIVHCTTRTIDGIIVNST 76

Query:    69 RSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTF 128
             R E+GGKG+P+R VLGKSK++LG  EG PTML GE++MFKMKPQ+HY E+DCPV AP  F
Sbjct:    77 RREHGGKGVPLRFVLGKSKMILGFAEGFPTMLMGEIAMFKMKPQIHYAEEDCPVTAPDGF 136

Query:   129 PKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKL 188
             PKD+EL FEIEM+DF KAKI+A+D GVVKK+I+EG+GWETPR PYEV A I+A+TGDGK 
Sbjct:   137 PKDDELQFEIEMLDFFKAKIVAEDLGVVKKIIDEGKGWETPREPYEVTARITARTGDGKE 196

Query:   189 ILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCXXX 248
             +L  +E EPYFFT GKSEVPKGLEMGIG+M REEKA+IYVTS YLT S L+P +EG    
Sbjct:   197 LLPSKE-EPYFFTIGKSEVPKGLEMGIGSMAREEKAIIYVTSAYLTNSSLIPQLEGIEEV 255

Query:   249 XXXXXXXXXIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVF 308
                      +QVRDMLGDGRLIKRR+ DGKGEFPMDCPLHDSLL VHYKGMLL+E K +F
Sbjct:   256 QFEVELVQFVQVRDMLGDGRLIKRRVVDGKGEFPMDCPLHDSLLRVHYKGMLLDEPKSIF 315

Query:   309 YDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEG 368
             YDTRVDN G+PLEF SGEGLVPEGFEMCVRLMLPGE ++VTCPPD+AYDKF RPANVPEG
Sbjct:   316 YDTRVDNHGEPLEFCSGEGLVPEGFEMCVRLMLPGEKSIVTCPPDFAYDKFPRPANVPEG 375

Query:   369 AHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDF 428
             AH+QWEIELLGFE PKDWTG +F  IMD+AEKI+ TGNRLFKEGKFELAKAKYEKVLR++
Sbjct:   376 AHVQWEIELLGFEMPKDWTGFTFQEIMDDAEKIKTTGNRLFKEGKFELAKAKYEKVLREY 435

Query:   429 NHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRG 488
             NHV+PQDD+EGK+F   R+ LHLNVAAC  K+GE RKSI+ CNKVL+ANP HVK LYRRG
Sbjct:   436 NHVHPQDDDEGKIFANSRSSLHLNVAACYQKMGEYRKSIDTCNKVLEANPVHVKALYRRG 495

Query:   489 MAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKP 548
             M+YM LG+F++A++DFE M+ VDKSSEPDATAAL+KLK+  QE E KARKQFKGLFDKKP
Sbjct:   496 MSYMLLGDFDDAKKDFEKMIAVDKSSEPDATAALNKLKQTIQETEKKARKQFKGLFDKKP 555

Query:   549 GEISEVGI-ENQG-EDQAAGKNEN-DDSEQESD 578
             GEISEVG+ E +G +    G  E    +++++D
Sbjct:   556 GEISEVGVGEPEGNKTDTTGSGEAASTADRDTD 588

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q6K5Q1 P0579G08.8 "Putative peptidylprolyl isomerase" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
 Identities = 155/529 (29%), Positives = 256/529 (48%)

Query:    50 QVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKM 109
             +V  H T   LDG   +S+R     +  P +  LG+ +++ G   GI TM KGE ++F +
Sbjct:   115 EVQVHYTGTLLDGTKFDSSRD----RDAPFKFTLGQGQVIKGWDLGIKTMKKGENAIFTI 170

Query:   110 KPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETP 169
              P++ YGED     +P   P +  L F++E+I +   K I  D G++KKV+ EG  WE P
Sbjct:   171 PPELAYGED----GSPPVIPPNATLQFDVELISWESVKDICKDGGILKKVLAEGTKWENP 226

Query:   170 RAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT 229
             R   EV      +  DG ++    E +   FT         +   + TM + EKA++ V 
Sbjct:   227 RDRDEVFVKYEVRLEDGTVVA---ESDGVEFTVKDGHFCPAISKAVKTMKKNEKALLTVK 283

Query:   230 SQYLTPSPLMPVVEGCXXXXXXXXXXXXIQ------VRDMLGDGRLIKRRIRDGKG-EFP 282
              QY       P                 ++      V ++  D +++K+ + +G+G E P
Sbjct:   284 PQYGFGEQGRPAARDEAAIPPNATLHINLELVSWKAVTEIGNDKKILKKILHEGEGYERP 343

Query:   283 MDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLP 342
              DC    +L+ V   G L  E+  +F     D D +P EF + E  V EG +  V  M  
Sbjct:   344 SDC----TLVRVKLIGKL--EDGTIFVTRGHDGD-EPFEFKTDEDQVVEGLDKAVLSMKK 396

Query:   343 GEIALVTCPPDYAY--DKFLRPANV-PEGAHIQWEIELLGFEKPKD-WTGLSFDGIMDEA 398
             GE+ALVT PP+YA+  D+  +  +V P  + + +E+EL+ F+K K+ W        ++ A
Sbjct:   397 GEVALVTIPPEYAFGSDETRQDLSVVPPNSTVYYEVELVSFDKEKESWDMKENTEKIEAA 456

Query:   399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLL 458
              K +  GN  FK  K+  A  +Y K L    + +   +EE ++    +    LN AAC L
Sbjct:   457 AKKKDEGNAWFKMEKYARASKRYGKALNFIQYDSSFSEEEKQLSKPLKVSCKLNNAACKL 516

Query:   459 KLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDA 518
             KL + +++ E C +VL+ +  +VK  YRR  A+M L +F+ A+ D +  +++D  +  D 
Sbjct:   517 KLKDYKEAKELCTEVLELDSMNVKAFYRRAQAHMYLVDFDLAELDIKKALEIDPDNR-DV 575

Query:   519 TAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGIENQGEDQAAGK 567
                  +LK++ +E + K  K +  +  K   ++ +   E  G  QA  K
Sbjct:   576 KMGYRRLKEKVKEQKRKETKLYGNMISKL-SKLEDSETEG-GTTQAPSK 622

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q9XFE4 OSJNBa0091C07.4 "OSJNBa0091C07.4 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 160/513 (31%), Positives = 250/513 (48%)

Query:    50 QVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKM 109
             +V  H T   LDG   +S+R     +G P +  LG+ +++ G  EGI TM KGE ++F +
Sbjct:    70 EVQVHYTGTLLDGTKFDSSRD----RGTPFKFSLGQGEVIKGWDEGIKTMKKGEQAVFTV 125

Query:   110 KPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETP 169
              P++ YGE      +P   P +  L F++E++ +A  K I  D G+ KKV+ EG  WE P
Sbjct:   126 PPELAYGE----AGSPPAIPPNATLRFDVELLSWASVKDICKDGGIFKKVLAEGHKWENP 181

Query:   170 RAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT 229
             +   EV     A+  DG ++ S  +G  +    G    P  L   + TM + EK ++ V 
Sbjct:   182 KDLDEVLVKYEARLEDGTVV-SKSDGVEFAVKDGYF-CP-ALSKAVKTMKKGEKVLLTVK 238

Query:   230 SQYLTPSPLMPVVEGCXXXXXXXXXXXXIQVRD-----MLGDG-RLIKRRIRDGKG-EFP 282
              QY       P                 +++       ++GD  R++K+ +++G+G E P
Sbjct:   239 PQYGFGEQGKPASGAEAAVPPNATLYVDLELLSWKTVTLIGDDKRILKKVLKEGEGYERP 298

Query:   283 MDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLP 342
              D     +++ V + G L  E+  VF     D D +P EF + E  V EG +  V  M  
Sbjct:   299 ND----GAVVRVRFIGKL--EDGTVFSKKGHDGD-EPFEFRTDEEQVIEGLDRTVVTMKK 351

Query:   343 GEIALVTCPPDYAYDKFLRP---ANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAE 399
             GE+ALV  PP +A+         A VP  + + +E+EL+ FEK K+    S+D + D AE
Sbjct:   352 GEVALVRLPPQHAFGSTETKQDLAVVPANSTVWYEVELVSFEKEKE----SWD-LKDNAE 406

Query:   400 KIRVT------GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNV 453
             KI         GN  FK GK+  A  +YEK  +   + +   D+E K     +    LN 
Sbjct:   407 KIEAAAKKKDEGNVWFKMGKYAKASKRYEKAAKYIEYDSSFTDDEKKQSKALKVSCKLNN 466

Query:   454 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513
             AAC LKL E R++ + C KVL+    +VK LYRR  AY+ L + E A+ D +  +++D  
Sbjct:   467 AACKLKLKEYREAEKLCTKVLELESTNVKALYRRTQAYIELADLELAELDVKKALEIDPD 526

Query:   514 SEPDATAALSKLKKQRQEVESKARKQFKGLFDK 546
             +  D       LK++ +E   +  K +  +F K
Sbjct:   527 NR-DVKMVYKTLKEKIKEYNKRDAKFYGNMFAK 558

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q7F1F2 OJ1191_A10.119 "cDNA clone:J033121G16, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 156/527 (29%), Positives = 253/527 (48%)

Query:    50 QVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKM 109
             +V  H T   LDG   +S+R     +G P +  LG+ +++ G   GI TM KGE ++F +
Sbjct:    66 EVEVHYTGTLLDGKKFDSSRD----RGTPFKFKLGQGQVIKGWDLGIKTMKKGENAVFTI 121

Query:   110 KPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETP 169
              P + YGE      +P T P    L F++E++ +   K I  D G+ KK++ EG+ WE P
Sbjct:   122 PPDLAYGES----GSPPTIPASATLQFDVELLSWTSVKDICQDGGIFKKILKEGEKWENP 177

Query:   170 RAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT 229
             +   EV     A+  DG +I S  EG    FT         L   + TM + EK ++ V 
Sbjct:   178 KDLDEVFVKYEARLEDGTVI-SKSEGAE--FTVKDGFFCPALAKAVKTMKKAEKVLLTVK 234

Query:   230 SQYLTPSPLMPVV--EGCXXXXXXXXXXXXI----QVRDMLGDGRLIKRRIRDGKGEFPM 283
              QY       P    EG             +     V ++  D +++K+ + +G G    
Sbjct:   235 PQYGFGENGRPAAGEEGAVPPNATLLVNLELVSWKTVTEIGDDKKILKKVLTEGTG---Y 291

Query:   284 DCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDG-QPLEFSSGEGLVPEGFEMCVRLMLP 342
             + P   +++ V   G L  ++  +F  T+  +D  +P EF + E  V +G +  V  M  
Sbjct:   292 ERPNEGAVVKVKITGKL--QDGTIF--TKKGHDEPEPFEFKTDEEEVIDGIDRAVLNMKN 347

Query:   343 GEIALVTCPPDYAYDKFLRP---ANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAE 399
             GE+ALVT PP+YA+         A VP  + + +E+EL+ F K K+   L+    ++ A 
Sbjct:   348 GEVALVTIPPEYAFGSTESKQDLAVVPPNSTVIYEVELVSFVKDKESWDLNNTEKIETAG 407

Query:   400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK 459
               +  GN LFK GK+  A  +YEK  +   + +   ++E K     +   +LN AAC LK
Sbjct:   408 AKKEEGNALFKLGKYVRASKRYEKAAKFIEYDSSFSEDEKKQSKQLKVTCNLNNAACKLK 467

Query:   460 LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDAT 519
             L + +++ + C KVL+ +  +VK LYRR  AYM L + E A+ D +  +++D  +  D  
Sbjct:   468 LKDYKQAEKLCTKVLELDSQNVKALYRRAQAYMQLADLELAEVDIKKALEIDPDNR-DVK 526

Query:   520 AALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGIENQGEDQAAG 566
                  LK++ +E   K  K +  +F K   + +E G    G +   G
Sbjct:   527 LTYKNLKEKVKEYNKKDAKFYSNMFAKMTKQPAEDGKAGSGAESKQG 573

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

TAIR|locus:2152561 ROF2 "AT5G48570" [Arabidopsis thaliana (taxid:3702)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 155/554 (27%), Positives = 263/554 (47%)

Query:     5 DEDI--NPQKKKAPSEDDKRRMKIVPGSLMKAVMRXXXXXXXXXXXXQVAYHCTVRTLDG 62
             D D+  N +   AP       M+I    L K +++            +V  H T   LDG
Sbjct:    20 DMDLPDNDEADSAPYLKIGEEMEIGKSGLKKKLVKECEKWDTPENGDEVEVHYTGTLLDG 79

Query:    63 VIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPV 122
                +S+R     +G P +  LG+  ++ G   GI TM KGE ++F + P++ YGE     
Sbjct:    80 TKFDSSRD----RGTPFKFTLGQGHVIKGWDLGIKTMKKGENAIFTIPPELAYGE----T 131

Query:   123 AAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAK 182
              +P T P +  L F++E+I +   K I  D GV KK+I EG+ WE P+   EV     A+
Sbjct:   132 GSPPTIPPNATLQFDVELIAWRSVKDICGDGGVSKKIIVEGEKWEKPKDLDEVYVKYEAR 191

Query:   183 TGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVV 242
               DG ++    +G    FT  +      L   + TM R EK ++ V  QY       P  
Sbjct:   192 LEDGTIV-GKSDGVE--FTVKEGHFCPALSKAVKTMKRGEKVLLTVKPQYGFGEFGRPAS 248

Query:   243 EGCXXXXX-XXXXXXXIQ------VRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVH 295
             +G              ++      V ++  D ++IK+ +++G+G    + P   +++ + 
Sbjct:   249 DGLQAAIPPNATLQIDLELVSWKTVVEVTDDRKVIKKILKEGEG---YERPNEGAIVKLK 305

Query:   296 YKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYA 355
               G L  +   VF     + D +P EF   E  V EG E  V  M  GE+AL+T  P+YA
Sbjct:   306 LIGKL-QDGTTVFVKKGHEEDEEPFEFKIDEEQVIEGLEKAVMGMKKGEVALITISPEYA 364

Query:   356 Y---DKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEG 412
             +   +     A +P  + + +E+EL+ F K K+   ++    ++ A K +  GN LFK G
Sbjct:   365 FGSSESKQELAVIPPNSTVYYEVELVSFIKEKESWDMNTQERIEAAGKKKEEGNVLFKAG 424

Query:   413 KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK 472
             K+  A  +YE+ ++   + +  D+EE K     +   +LN AAC LKL + +++ +   K
Sbjct:   425 KYARASKRYERGVKYIEYDSTFDEEEKKKSKDLKIACNLNDAACKLKLKDYKEAAKLSTK 484

Query:   473 VLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEV 532
             VL+ +  +VK +YRR  AY+   + + A+ D +  +++D  ++ +      KLK++ +E 
Sbjct:   485 VLEMDSRNVKAMYRRAHAYLETADLDLAELDIKKALEIDPDNK-EVKIEYKKLKEKVKEY 543

Query:   533 ESKARKQFKGLFDK 546
               K  K +  +  K
Sbjct:   544 NKKDAKFYSNMLSK 557

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;RCA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2090265 ROF1 "AT3G25230" [Arabidopsis thaliana (taxid:3702)]

 Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
 Identities = 146/531 (27%), Positives = 253/531 (47%)

Query:    25 KIVPGSLMKAVMRXXXXXXXXXXXXQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLG 84
             K +   L K +++            +V  H T   LDG   +S+R     +  P +  LG
Sbjct:    34 KEIQQGLKKKLLKEGEGYETPENGDEVEVHYTGTLLDGTKFDSSRD----RATPFKFTLG 89

Query:    85 KSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA 144
             + +++ G   GI TM KGE ++F +  ++ YGE      +P T P +  L F++E++ + 
Sbjct:    90 QGQVIKGWDIGIKTMKKGENAVFTIPAELAYGES----GSPPTIPANATLQFDVELLKWD 145

Query:   145 KAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGK 204
               K I  D GV KK++  G+ WE P+   EV     AK  DG ++    +G    FT   
Sbjct:   146 SVKDICKDGGVFKKILAVGEKWENPKDLDEVLVKFEAKLEDGTVV-GKSDGVE--FTVKD 202

Query:   205 SEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCXXXXXXXXXXXXIQ----- 259
                   L   + TM + EK ++ V  QY       P   G             ++     
Sbjct:   203 GHFCPALTKAVKTMKKGEKVLLTVKPQYGFGEKGKPASAGEGAVPPNATLEINLELVSWK 262

Query:   260 -VRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQ 318
              V ++  D +++K+ +++G G    + P   +++ V   G L  ++  VF       + +
Sbjct:   263 TVSEVTDDNKVVKKVLKEGDG---YERPNEGAVVKVKLIGKL--QDGTVFLKKGHGENEE 317

Query:   319 PLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAY---DKFLRPANVPEGAHIQWEI 375
             P EF + E  V +G +  V  M  GE+ALVT  P+YA+   +     A VP  + + +E+
Sbjct:   318 PFEFKTDEEQVVDGLDRAVMKMKKGEVALVTIDPEYAFGSNESQQELAVVPPNSTVTYEV 377

Query:   376 ELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQD 435
             +LL F+K ++   ++ +  ++ A K +  GN  FK GK+ LA  +YEK ++   +     
Sbjct:   378 DLLTFDKERESWDMNTEEKIEAASKKKEEGNSKFKGGKYSLASKRYEKAVKFIEYDTSFS 437

Query:   436 DEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG 495
             +EE K     +   +LN AAC LKL + +++ + C KVL+    +VK LYRR  AYM L 
Sbjct:   438 EEEKKQAKALKVACNLNDAACKLKLKDYKQAEKLCTKVLELESTNVKALYRRAQAYMELS 497

Query:   496 EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDK 546
             + + A+ D +  +++D ++  +      +LK++ +E   K  K +  +F K
Sbjct:   498 DLDLAEFDVKKALEIDPNNR-EVKLEQKRLKEKMKEFNKKEAKFYGNMFAK 547

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0009408 "response to heat" evidence=RCA;IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IDA

GO:0071944 "cell periphery" evidence=IDA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

UNIPROTKB|F1NP08 FKBP4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 371 (135.7 bits), Expect = 9.3e-34, P = 9.3e-34
 Identities = 121/436 (27%), Positives = 209/436 (47%)

Query:   152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDG-KLILSHREGEPYFFTFGKSEVPKG 210
             D GV+K V  EG G E+P    +V    +    DG K   S    + + F  GK EV K 
Sbjct:    23 DEGVLKVVKREGTGTESPMIGDKVTVHYTGWLLDGTKFDSSLDRRDKFSFDLGKGEVIKA 82

Query:   211 LEMGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEGCXXXXXXXXXXXXIQVRDMLGD- 266
              ++ + TM   E   I    +Y   L  SP  P +                +  D+  D 
Sbjct:    83 WDIAVATMKVGEICQITCKPEYAYGLAGSP--PKIPP-NATLIFEIELFEFKGEDLTDDE 139

Query:   267 -GRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
              G +I RRIR  KGE  +  P   +L+ + ++G   +   + F       D + L F  G
Sbjct:   140 DGGII-RRIRK-KGEGYLK-PNEGALVEIQFEGRYRD---RAF-------DKRELRFEIG 186

Query:   326 EGL---VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFE 381
             EG    +P G E  ++ M   E ++    P+Y +    +    +P  A +Q+E++L  FE
Sbjct:   187 EGDNYDLPHGLEKAIQKMEKSEESIFYLKPNYGFGSTGKEKFQIPPDAELQYEVKLKSFE 246

Query:   382 KPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKV 441
             K K+   ++ +  ++++  ++  G + FKEGK++ A  +Y+K++    H +   DEE   
Sbjct:   247 KAKESWEMNTEEKLEQSCMVKERGTQYFKEGKYKRAALQYKKIVLWLEHESGLSDEEDTK 306

Query:   442 FVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQ 501
                 R   HLN+A C LKL E  +++E CNK L+ + ++ KGL+RRG A++A+ +FE A+
Sbjct:   307 AKSLRLAAHLNLAMCHLKLKEYSQALENCNKALELDSSNEKGLFRRGEAHLAVNDFELAR 366

Query:   502 RDFEMMMKV---DKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDK--KPGEISEVGI 556
              DF+ ++++   +K+++        K+++Q ++ +      F+ L DK  KP    +   
Sbjct:   367 GDFQKVIQLYPSNKAAKVQLVTCQQKIREQHEKEKKMYANMFQRLADKELKPATTLQTSH 426

Query:   557 ENQGE--DQAAGKNEN 570
                 E  D+  G ++N
Sbjct:   427 TEDAEMKDEQNGVDDN 442

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006463 "steroid hormone receptor complex assembly" evidence=IEA

GO:0007566 "embryo implantation" evidence=IEA

GO:0030521 "androgen receptor signaling pathway" evidence=IEA

GO:0030850 "prostate gland development" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0031503 "protein complex localization" evidence=IEA

GO:0035259 "glucocorticoid receptor binding" evidence=IEA

GO:0046661 "male sex differentiation" evidence=IEA

GO:0051219 "phosphoprotein binding" evidence=IEA

UNIPROTKB|Q95L05 FKBP5 "Peptidyl-prolyl cis-trans isomerase FKBP5" [Chlorocebus aethiops (taxid:9534)]

 Score = 370 (135.3 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 117/435 (26%), Positives = 201/435 (46%)

Query:   152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLI-LSHREGEPYFFTFGKSEVPKG 210
             D GV+K V   G G ETP    +V      K  +GK    SH   EP+ F+ GKS+V K 
Sbjct:    30 DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFNSSHDRNEPFVFSLGKSQVIKA 89

Query:   211 LEMGIGTMTREEKAVIYVTSQYLTPSP-LMPVVEGCXXXXXXXXXXXXIQVRDMLGDGRL 269
              ++G+ TM + E   +    +Y   S   +P +                +  D+L DG +
Sbjct:    90 WDIGVATMKKGEICHLLCKPEYAYGSAGSVPKIPS-NATLFFEIELLDFKGEDLLEDGGI 148

Query:   270 IKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL- 328
             I+R  R G+G      P   + + +H +G      +++F       D + + F+ GEG  
Sbjct:   149 IRRTKRKGEG---YSNPNEGATVEIHLEGRC---GERMF-------DCRDVAFTVGEGED 195

Query:   329 --VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEKPKD 385
               +P G +  +  M   E  ++   P Y + +  +P   +   A + +E+ L  FEK K+
Sbjct:   196 HDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKE 255

Query:   386 WTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGK 445
                +     +++A  ++  G   FK GK+  A  +Y K++          ++E K     
Sbjct:   256 SWEMDTKEKLEQAAIVKEKGTVYFKGGKYMRAVIQYGKIVSWLEMEYGLSEKESKASESF 315

Query:   446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
                  LN+A C LKL E  K++E C+K L  + A+ KGLYRRG A + + EFE A+ DFE
Sbjct:   316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFE 375

Query:   506 MMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGIENQGEDQAA 565
              +++V+  ++  A   +S  +K+ +E   + R+ +  +F K     +E   + +  ++A 
Sbjct:   376 KVLEVNPQNKA-ARLQISMCQKKAKEHNERDRRIYANMFKK----FAEQDAKEEA-NKAM 429

Query:   566 GKNENDDSEQESDGD 580
             GK  ++    E   D
Sbjct:   430 GKKTSEGVTNEKGTD 444

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0061077 "chaperone-mediated protein folding" evidence=ISS

UNIPROTKB|F1NIM4 FKBP4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 365 (133.5 bits), Expect = 4.4e-33, P = 4.4e-33
 Identities = 115/409 (28%), Positives = 200/409 (48%)

Query:   152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDG-KLILSHREGEPYFFTFGKSEVPKG 210
             D GV+K V  EG G E+P    +V    +    DG K   S    + + F  GK EV K 
Sbjct:    23 DEGVLKVVKREGTGTESPMIGDKVTVHYTGWLLDGTKFDSSLDRRDKFSFDLGKGEVIKA 82

Query:   211 LEMGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEGCXXXXXXXXXXXXIQVRDMLGD- 266
              ++ + TM   E   I    +Y   L  SP  P +                +  D+  D 
Sbjct:    83 WDIAVATMKVGEICQITCKPEYAYGLAGSP--PKIPP-NATLIFEIELFEFKGEDLTDDE 139

Query:   267 -GRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
              G +I RRIR  KGE  +  P   +L+ + ++G   +   + F       D + L F  G
Sbjct:   140 DGGII-RRIRK-KGEGYLK-PNEGALVEIQFEGRYRD---RAF-------DKRELRFEIG 186

Query:   326 EGL---VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFE 381
             EG    +P G E  ++ M   E ++    P+Y +    +    +P  A +Q+E++L  FE
Sbjct:   187 EGDNYDLPHGLEKAIQKMEKSEESIFYLKPNYGFGSTGKEKFQIPPDAELQYEVKLKSFE 246

Query:   382 KPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKV 441
             K K+   ++ +  ++++  ++  G + FKEGK++ A  +Y+K++    H +   DEE   
Sbjct:   247 KAKESWEMNTEEKLEQSCMVKERGTQYFKEGKYKRAALQYKKIVLWLEHESGLSDEEDTK 306

Query:   442 FVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQ 501
                 R   HLN+A C LKL E  +++E CNK L+ + ++ KGL+RRG A++A+ +FE A+
Sbjct:   307 AKSLRLAAHLNLAMCHLKLKEYSQALENCNKALELDSSNEKGLFRRGEAHLAVNDFELAR 366

Query:   502 RDFEMMMKV---DKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKK 547
              DF+ ++++   +K+++        K+++Q ++ +      F+ L DK+
Sbjct:   367 GDFQKVIQLYPSNKAAKVQLVTCQQKIREQHEKEKKMYANMFQRLADKE 415

GO:0006457 "protein folding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7DMA9	PAS1_ARATH	5, ., 2, ., 1, ., 8	0.7380	0.9536	0.9401	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.2.1	0.983
4th Layer	5.2.1.8	0.979

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	626
pfam00254	94	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t	1e-16
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-16
pfam00254	94	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t	4e-16
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	4e-09
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-08
pfam13414	69	pfam13414, TPR_11, TPR repeat	3e-07
pfam00254	94	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t	4e-07
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	2e-06
COG0545	205	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans	3e-06
COG0545	205	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans	2e-05
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	3e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	9e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.001
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	0.002
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	0.002
pfam13431	34	pfam13431, TPR_17, Tetratricopeptide repeat	0.004

>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase

 Score = 75.0 bits (185), Expect = 1e-16
 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 5/86 (5%)

Query: 294 VHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPD 353
           VHY G L +    VF  ++  + G+P EF+ G G V  G++  +  M  GE   +T PP+
Sbjct: 13  VHYTGKLED--GTVFDSSK--DRGKPFEFTLGSGQVIPGWDEGLLGMKVGEKRKLTIPPE 68

Query: 354 YAY-DKFLRPANVPEGAHIQWEIELL 378
            AY ++ L    +P  A + +E+ELL
Sbjct: 69  LAYGEEGLAGGVIPPNATLVFEVELL 94

Length = 94

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 74.7 bits (184), Expect = 2e-16
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 15/109 (13%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           GN  +K G ++ A   YEK L     ++P + +            + N+AA   KLG+  
Sbjct: 7   GNLYYKLGDYDEALEYYEKAL----ELDPDNAD-----------AYYNLAAAYYKLGKYE 51

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513
           +++E   K L+ +P + K  Y  G+AY  LG++EEA   +E  +++D +
Sbjct: 52  EALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase

 Score = 73.8 bits (182), Expect = 4e-16
 Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 7/101 (6%)

Query: 41  GDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTML 100
           G      GD V  H T +  DG + +S++        P    LG  +++ G  EG+  M 
Sbjct: 1   GPEKAKKGDTVTVHYTGKLEDGTVFDSSKDRGK----PFEFTLGSGQVIPGWDEGLLGMK 56

Query: 101 KGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMI 141
            GE     + P++ YGE+     A    P +  L FE+E++
Sbjct: 57  VGEKRKLTIPPELAYGEEG---LAGGVIPPNATLVFEVELL 94

Length = 94

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 53.9 bits (130), Expect = 4e-09
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 451 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510
           LN+     KLG+  +++E   K L+ +P +    Y    AY  LG++EEA  D+E  +++
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL 63

Query: 511 DKSSEPDATAALSKLKKQRQEVESKARKQFK 541
           D  +   A   L     +  + E +A + ++
Sbjct: 64  DPDN-AKAYYNLGLAYYKLGKYE-EALEAYE 92

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGE-FEEAQRDFEM 506
               N+   L KLG+  ++IEA  K L+ +P + +  Y   +AY+ LG+ +EEA  D E 
Sbjct: 4   EALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEK 63

Query: 507 MMKVDK 512
            +++D 
Sbjct: 64  ALELDP 69

Length = 69

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 16/84 (19%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           D AE ++  GN LFK G ++ A   YEK L     ++P + E            + N+A 
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALE----LDPDNAE-----------AYYNLAL 45

Query: 456 CLLKLGECRKS-IEACNKVLDANP 478
             LKLG+  +  +E   K L+ +P
Sbjct: 46  AYLKLGKDYEEALEDLEKALELDP 69

Length = 69

>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase

 Score = 48.0 bits (115), Expect = 4e-07
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 3/94 (3%)

Query: 165 GWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEK 223
           G E  +    V    + K  DG +  S +  G+P+ FT G  +V  G + G+  M   EK
Sbjct: 1   GPEKAKKGDTVTVHYTGKLEDGTVFDSSKDRGKPFEFTLGSGQVIPGWDEGLLGMKVGEK 60

Query: 224 AVIYVTSQYLTPS--PLMPVVEGCEEVHFEVELV 255
             + +  +           V+     + FEVEL+
Sbjct: 61  RKLTIPPELAYGEEGLAGGVIPPNATLVFEVELL 94

Length = 94

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 50.8 bits (121), Expect = 2e-06
 Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 20/145 (13%)

Query: 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACL 457
           A K++  GN+ ++   F  A   Y K +         + +   V+       + N AAC 
Sbjct: 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAI---------ECKPDPVY-------YSNRAACH 170

Query: 458 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPD 517
             LG+  K +E     L+ +P + K L RR  AY  LG++ +A  D      +D      
Sbjct: 171 NALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQ 230

Query: 518 ATAALSK-LKKQRQEVESKARKQFK 541
           +  A+ + LKK     ESKA++  +
Sbjct: 231 SAQAVERLLKKF---AESKAKEILE 252

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 10/114 (8%)

Query: 267 GRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGE 326
             L  + ++ G G  P         + VHY G L++    VF D+  D  GQP EF  G 
Sbjct: 101 SGLQYKVLKAGDGAAPKK----GDTVTVHYTGTLID--GTVF-DSSYDR-GQPAEFPLGG 152

Query: 327 GLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 380
             V  G++  ++ M  G    +T PP+ AY +   P  +P  + + +E+ELL  
Sbjct: 153 --VIPGWDEGLQGMKVGGKRKLTIPPELAYGERGVPGVIPPNSTLVFEVELLDV 204

Length = 205

>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 13/137 (9%)

Query: 9   NPQKKKAPSEDDKRRMKIV--PGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVE 66
           N  + KA  E + +   +   P  L   V++ G G   P  GD V  H T   +DG + +
Sbjct: 79  NAAEGKAFLEKNAKEKGVKTLPSGLQYKVLKAGDGA-APKKGDTVTVHYTGTLIDGTVFD 137

Query: 67  STRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPS 126
           S+      +G P    LG   ++ G  EG+  M  G      + P++ YGE       P 
Sbjct: 138 SSYD----RGQPAEFPLGG--VIPGWDEGLQGMKVGGKRKLTIPPELAYGERG----VPG 187

Query: 127 TFPKDEELHFEIEMIDF 143
             P +  L FE+E++D 
Sbjct: 188 VIPPNSTLVFEVELLDV 204

Length = 205

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 12/55 (21%), Positives = 20/55 (36%)

Query: 457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511
            L+ G+  +++ A    L   P   + L   G A +  G   EA       +  D
Sbjct: 7   ALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAAD 61

Length = 65

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 38.1 bits (89), Expect = 9e-04
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 7/64 (10%)

Query: 449 LHLNVAACLLKLGECRKSIEACNKVL-------DANPAHVKGLYRRGMAYMALGEFEEAQ 501
              N+A  L +LG+  +++E   K L       + +P   + L      Y+ALG+++EA 
Sbjct: 7   ALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEAL 66

Query: 502 RDFE 505
              E
Sbjct: 67  EYLE 70

Length = 78

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 37/161 (22%), Positives = 66/161 (40%), Gaps = 25/161 (15%)

Query: 410 KEGKFELAKAKYEKVLR-DFNHVN-----------PQDDEEGKVFVGKRNLLH------- 450
           +EG  + A  ++EKVL  D  ++              ++EE   ++ K   L+       
Sbjct: 511 QEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPA 570

Query: 451 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510
           L +A   L  G+ +K++   N+  DA P   +     G A +A G+  +A   F+ ++ +
Sbjct: 571 LALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL 630

Query: 511 DKSSEPDATAALSKLKK--QRQEVESKARKQFKGLFDKKPG 549
                PD+  AL  L       +  +KA    K   + KP 
Sbjct: 631 Q----PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD 667

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 35.9 bits (84), Expect = 0.002
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513
            K LY  G AY+ LG+++EA   +E  ++++ +
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPN 33

Length = 34

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 481 VKGLYRRGMAYMALGEFEEAQRDFE 505
            + LY  G+AY  LG++EEA   +E
Sbjct: 1   AEALYNLGLAYYKLGDYEEALEAYE 25

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

>gnl|CDD|205609 pfam13431, TPR_17, Tetratricopeptide repeat

 Score = 34.9 bits (81), Expect = 0.004
 Identities = 8/34 (23%), Positives = 18/34 (52%)

Query: 469 ACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQR 502
              K L+ +P + +  Y   +  + LG+++EA +
Sbjct: 1   LYEKALELDPNNAEAYYNLALLLLNLGQYDEALQ 34

Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	626
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	100.0
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	100.0
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	100.0
KOG0549	188	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.96
KOG0549	188	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.95
KOG0544	108	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.93
KOG0544	108	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.92
COG0545	205	FkpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.92
COG0545	205	FkpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.88
PRK11570	206	peptidyl-prolyl cis-trans isomerase; Provisional	99.86
KOG0552	226	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.85
TIGR03516	177	ppisom_GldI peptidyl-prolyl isomerase, gliding mot	99.83
KOG0553	304	consensus TPR repeat-containing protein [General f	99.82
KOG0552	226	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.8
PRK10902	269	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.8
KOG4234	271	consensus TPR repeat-containing protein [General f	99.79
TIGR03516	177	ppisom_GldI peptidyl-prolyl isomerase, gliding mot	99.78
PRK11570	206	peptidyl-prolyl cis-trans isomerase; Provisional	99.76
PF00254	94	FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer	99.74
PF00254	94	FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer	99.71
PRK10902	269	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.7
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.62
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	99.61
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.61
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.6
PRK15095	156	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.56
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.55
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.55
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.51
COG1047	174	SlpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.51
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.49
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.47
PRK10737	196	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.46
PRK15359	144	type III secretion system chaperone protein SscB;	99.45
PRK15095	156	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.44
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.44
PRK10737	196	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.38
COG1047	174	SlpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.37
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.29
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.26
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.26
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.17
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.13
PRK11189	296	lipoprotein NlpI; Provisional	99.12
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.12
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.11
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.02
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	99.01
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.0
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.93
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.92
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.91
KOG4555	175	consensus TPR repeat-containing protein [Function	98.9
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.9
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.89
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.87
KOG1126	638	consensus DNA-binding cell division cycle control	98.85
PRK15359	144	type III secretion system chaperone protein SscB;	98.84
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.84
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.84
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.82
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.82
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.81
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.8
PRK15331	165	chaperone protein SicA; Provisional	98.79
KOG1125	579	consensus TPR repeat-containing protein [General f	98.79
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.79
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.79
PRK12370	553	invasion protein regulator; Provisional	98.78
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.76
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.76
PRK12370	553	invasion protein regulator; Provisional	98.75
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.74
PRK11189	296	lipoprotein NlpI; Provisional	98.72
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.71
PF13371	73	TPR_9: Tetratricopeptide repeat	98.7
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.69
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.66
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.64
PF13512	142	TPR_18: Tetratricopeptide repeat	98.64
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.63
PRK10803	263	tol-pal system protein YbgF; Provisional	98.62
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.62
TIGR00115	408	tig trigger factor. Trigger factor is a ribosome-a	98.61
KOG1126	638	consensus DNA-binding cell division cycle control	98.6
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.6
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.58
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.57
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.57
PLN02789	320	farnesyltranstransferase	98.56
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.54
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.53
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.53
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.53
PRK01490	435	tig trigger factor; Provisional	98.52
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.52
COG0544	441	Tig FKBP-type peptidyl-prolyl cis-trans isomerase	98.52
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.51
KOG1310	758	consensus WD40 repeat protein [General function pr	98.51
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.49
KOG0553	304	consensus TPR repeat-containing protein [General f	98.49
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.46
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.45
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.44
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	98.44
PLN02789	320	farnesyltranstransferase	98.41
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.4
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.4
KOG2003	840	consensus TPR repeat-containing protein [General f	98.4
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.39
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.39
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.38
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.38
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.37
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.37
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.36
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.36
KOG1129	478	consensus TPR repeat-containing protein [General f	98.34
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.33
TIGR00115	408	tig trigger factor. Trigger factor is a ribosome-a	98.32
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.32
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.31
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.29
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.29
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.28
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.28
KOG1125	579	consensus TPR repeat-containing protein [General f	98.26
KOG2076	895	consensus RNA polymerase III transcription factor	98.24
KOG2003	840	consensus TPR repeat-containing protein [General f	98.22
PF12688	120	TPR_5: Tetratrico peptide repeat	98.22
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.2
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.19
PF13371	73	TPR_9: Tetratricopeptide repeat	98.19
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.16
PRK01490	435	tig trigger factor; Provisional	98.16
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.16
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.15
COG0544	441	Tig FKBP-type peptidyl-prolyl cis-trans isomerase	98.11
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.08
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.08
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	98.08
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.07
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.07
PRK14574	822	hmsH outer membrane protein; Provisional	98.04
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.04
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.02
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.01
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	97.98
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.95
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.93
PF13431	34	TPR_17: Tetratricopeptide repeat	97.92
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.88
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	97.87
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	97.86
PRK11906	458	transcriptional regulator; Provisional	97.86
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.85
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.81
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.8
KOG2076	895	consensus RNA polymerase III transcription factor	97.8
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	97.8
PRK14574	822	hmsH outer membrane protein; Provisional	97.8
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.77
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.76
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	97.73
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.73
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.73
PRK10803	263	tol-pal system protein YbgF; Provisional	97.71
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.68
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.66
KOG1129	478	consensus TPR repeat-containing protein [General f	97.66
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.66
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	97.65
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.64
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.63
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.63
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.6
PF13428	44	TPR_14: Tetratricopeptide repeat	97.6
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.59
PRK11906	458	transcriptional regulator; Provisional	97.58
PF12688	120	TPR_5: Tetratrico peptide repeat	97.58
PF13428	44	TPR_14: Tetratricopeptide repeat	97.56
KOG4234	271	consensus TPR repeat-containing protein [General f	97.54
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.54
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.53
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.53
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.49
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.47
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	97.44
KOG4555	175	consensus TPR repeat-containing protein [Function	97.43
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.42
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.42
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.39
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.39
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.38
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.27
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.24
PRK10941	269	hypothetical protein; Provisional	97.22
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.2
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.19
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.19
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.18
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.17
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.16
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.14
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.11
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.08
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.06
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.04
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.0
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.0
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	96.95
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.93
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.91
PF13512	142	TPR_18: Tetratricopeptide repeat	96.87
KOG0495	913	consensus HAT repeat protein [RNA processing and m	96.84
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.81
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.8
PRK15331	165	chaperone protein SicA; Provisional	96.78
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	96.69
KOG3364	149	consensus Membrane protein involved in organellar	96.67
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	96.65
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.63
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.58
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.56
KOG1586	288	consensus Protein required for fusion of vesicles	96.55
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.52
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.51
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.46
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.41
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.38
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.33
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.29
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.29
PF13431	34	TPR_17: Tetratricopeptide repeat	96.27
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.22
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.21
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	96.17
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.15
KOG0495	913	consensus HAT repeat protein [RNA processing and m	96.03
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.99
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.93
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.92
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	95.92
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.83
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	95.82
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	95.7
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	95.56
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.53
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	95.38
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	95.33
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.32
COG4105	254	ComL DNA uptake lipoprotein [General function pred	95.31
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	95.3
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	95.24
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	95.23
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.21
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.14
COG2912	269	Uncharacterized conserved protein [Function unknow	95.04
PRK04841	903	transcriptional regulator MalT; Provisional	95.0
KOG2471	696	consensus TPR repeat-containing protein [General f	94.94
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	94.93
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.84
COG3118	304	Thioredoxin domain-containing protein [Posttransla	94.8
PRK04841	903	transcriptional regulator MalT; Provisional	94.79
KOG4340	459	consensus Uncharacterized conserved protein [Funct	94.68
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	94.65
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	94.64
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	94.41
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.38
KOG1585	308	consensus Protein required for fusion of vesicles	94.27
KOG4507	886	consensus Uncharacterized conserved protein, conta	94.18
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	93.9
PLN03218	1060	maturation of RBCL 1; Provisional	93.76
KOG2471	696	consensus TPR repeat-containing protein [General f	93.67
KOG1915	677	consensus Cell cycle control protein (crooked neck	93.48
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	93.39
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.39
PLN03218	1060	maturation of RBCL 1; Provisional	93.37
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	93.28
PLN03077	857	Protein ECB2; Provisional	93.11
COG4700	251	Uncharacterized protein conserved in bacteria cont	93.06
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	93.04
KOG1586	288	consensus Protein required for fusion of vesicles	92.77
PF06957	422	COPI_C: Coatomer (COPI) alpha subunit C-terminus;	92.39
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	92.33
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	92.25
KOG2610	491	consensus Uncharacterized conserved protein [Funct	92.23
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	92.1
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	92.08
COG3947	361	Response regulator containing CheY-like receiver a	91.94
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	91.83
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	91.8
COG3629	280	DnrI DNA-binding transcriptional activator of the	91.79
PF03704	146	BTAD: Bacterial transcriptional activator domain;	91.78
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	91.36
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	91.09
KOG1915	677	consensus Cell cycle control protein (crooked neck	90.99
PRK10941	269	hypothetical protein; Provisional	90.98
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	90.96
PLN03077	857	Protein ECB2; Provisional	90.57
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	90.52
PHA02537	230	M terminase endonuclease subunit; Provisional	90.27
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	89.9
COG4976	287	Predicted methyltransferase (contains TPR repeat)	89.53
KOG4814	872	consensus Uncharacterized conserved protein [Funct	89.48
KOG1585	308	consensus Protein required for fusion of vesicles	89.28
KOG2610	491	consensus Uncharacterized conserved protein [Funct	89.16
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	88.54
KOG3364	149	consensus Membrane protein involved in organellar	88.32
KOG2300	629	consensus Uncharacterized conserved protein [Funct	88.25
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	88.21
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	88.15
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	88.09
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	87.55
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	87.25
KOG2796	366	consensus Uncharacterized conserved protein [Funct	87.15
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	86.63
COG5191	435	Uncharacterized conserved protein, contains HAT (H	86.5
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	86.48
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	86.46
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	86.31
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	86.29
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	86.2
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	86.17
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	85.96
KOG2422	665	consensus Uncharacterized conserved protein [Funct	85.95
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	85.78
COG3898	531	Uncharacterized membrane-bound protein [Function u	85.68
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	85.68
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	85.48
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	84.65
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	84.43
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	83.95
KOG1550	552	consensus Extracellular protein SEL-1 and related	83.51
cd02656	75	MIT MIT: domain contained within Microtubule Inter	83.04
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	82.71
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	82.7
KOG1463	411	consensus 26S proteasome regulatory complex, subun	82.62
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	82.45
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	82.18
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	81.95
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	81.53
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	81.26
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	80.63
PF04212	69	MIT: MIT (microtubule interacting and transport) d	80.6
KOG2300	629	consensus Uncharacterized conserved protein [Funct	80.54
COG3118	304	Thioredoxin domain-containing protein [Posttransla	80.42
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	80.24
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	80.21

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.4e-65  Score=511.76  Aligned_cols=362  Identities=39%  Similarity=0.616  Sum_probs=334.6

Q ss_pred             ecCCCcCCCCCCCeEEEEEEEEeCCCcEEEecCCCccEEEEcCCCCccchHHHhhccCCCCcEEEEEEeCCccCCC-CCC
Q 006908          161 NEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPS-PLM  239 (626)
Q Consensus       161 ~~G~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~~~~~~g~-~~~  239 (626)
                      ++|+|++.|..|+.|.+||++++.||+.|+||.++.|+.|.+|.|.++.||..++.+|+.              |+ ..+
T Consensus         1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g~~~~p   66 (397)
T KOG0543|consen    1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRDGDPFKFDLGKGSVIKGWDLGVATMKK--------------GEAGSP   66 (397)
T ss_pred             CCCCCccCCCCCceeEEEEeEEecCCeecccccCCCceeeecCCCccccccccccccccc--------------cccCCC
Confidence            479999999999999999999999999999998899999999999999999999999998              43 356


Q ss_pred             CCCCCcceEEEEEEEeeEEeeeeecCCCcEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeeccCCCCCC
Q 006908          240 PVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQP  319 (626)
Q Consensus       240 ~~ip~~~~l~~~v~l~~~~~~~d~~~dg~v~k~il~~G~G~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~dt~~~~~~~p  319 (626)
                      |.||++.+|.|+|+|+          ||+|+|+|+++|.|.  ..+|..|.+|++||.|++.+  + +|+++.     -.
T Consensus        67 p~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd--~~~P~~g~~V~v~~~G~~~~--~-~f~~~~-----~~  126 (397)
T KOG0543|consen   67 PKIPSNATLLFEVELL----------DGGIIKRIIREGEGD--YSRPNKGAVVKVHLEGELED--G-VFDQRE-----LR  126 (397)
T ss_pred             CCCCCCcceeeeeccc----------CCceEEeeeecCCCC--CCCCCCCcEEEEEEEEEECC--c-ceeccc-----cc
Confidence            7899999999999999          799999999999996  35689999999999999976  4 775443     34


Q ss_pred             EEEEcCC-CcchhhHHHHhhcCCCCCEEEEEecCCCccc-cCCCCCCCCCCcceeeeeeecccc-cCCCCCCCChhhHHH
Q 006908          320 LEFSSGE-GLVPEGFEMCVRLMLPGEIALVTCPPDYAYD-KFLRPANVPEGAHIQWEIELLGFE-KPKDWTGLSFDGIMD  396 (626)
Q Consensus       320 ~~f~lG~-~~v~~gle~~l~~M~~GE~~~~~i~~~~ayg-~~~~~~~ip~~~~l~~~vel~~~~-~~~~~~~~~~~e~~~  396 (626)
                      |+|.+|+ ..|+.||+.||++|++||++.|+|+|.|||| ..++++.|||++++.|+|+|++|. .....|.|..++++.
T Consensus       127 fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~e~l~  206 (397)
T KOG0543|consen  127 FEFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGEPPLIPPNATLLYEVELLDFELKEDESWKMFAEERLE  206 (397)
T ss_pred             eEEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCCCCCCCCCceEEEEEEEEeeecCcccccccchHHHHH
Confidence            8899998 5899999999999999999999999999999 667889999999999999999999 444556677778999


Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~  476 (626)
                      .|...++.||.+|+.|+|..|+..|.+|+..|.+..+.++++.++...++..||+|+|+||+|+++|..|+..|+++|++
T Consensus       207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~  286 (397)
T KOG0543|consen  207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL  286 (397)
T ss_pred             HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcccccc
Q 006908          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGI  556 (626)
Q Consensus       477 dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  556 (626)
                      +|+|+||+||+|+||..+++|+.|+.+|++|++++|+| ++++.+|..|++++++++.+++++|++||.+......+...
T Consensus       287 ~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N-ka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~~~~k~~s  365 (397)
T KOG0543|consen  287 DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN-KAARAELIKLKQKIREYEEKEKKMYANMFAKLAEESAKTKS  365 (397)
T ss_pred             CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc
Confidence            99999999999999999999999999999999999999 79999999999999999999999999999998766555443


Q ss_pred             c
Q 006908          557 E  557 (626)
Q Consensus       557 ~  557 (626)
                      +
T Consensus       366 ~  366 (397)
T KOG0543|consen  366 E  366 (397)
T ss_pred             c
Confidence            3

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.2e-34  Score=289.08  Aligned_cols=345  Identities=25%  Similarity=0.370  Sum_probs=258.3

Q ss_pred             ecCCCCCCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCCCcEEEEEeecccccc
Q 006908           37 RPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYG  116 (626)
Q Consensus        37 ~~G~G~~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge~~~~~ip~~~~~g  116 (626)
                      ++|.|+.+|..||.|.+||++++.||+.|+||.+     +.|+.|.+|.+.++.||..++.+|+.              |
T Consensus         1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d-----~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g   61 (397)
T KOG0543|consen    1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRD-----GDPFKFDLGKGSVIKGWDLGVATMKK--------------G   61 (397)
T ss_pred             CCCCCccCCCCCceeEEEEeEEecCCeecccccC-----CCceeeecCCCccccccccccccccc--------------c
Confidence            4799999999999999999999999999999985     67999999999999999999999998              5


Q ss_pred             CCCCCCCCCCCCCCCceEEEEEEeeeecccccccccccEEEEEeecCCC-cCCCCCCCeEEEEEEEEeCCCcEEEecCCC
Q 006908          117 EDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQG-WETPRAPYEVKAWISAKTGDGKLILSHREG  195 (626)
Q Consensus       117 ~~~~~~~~~~~i~~~~~lv~~v~l~~~~~~~~v~~D~~v~~~i~~~G~g-~~~~~~g~~V~v~y~~~~~~g~~~~s~~~~  195 (626)
                      ..+.|    +.||++++|.|+|+|+          |++|+++|+++|.| +.+|..|..|+|||.+.+.++ +|+++.  
T Consensus        62 ~~~~p----p~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~~--  124 (397)
T KOG0543|consen   62 EAGSP----PKIPSNATLLFEVELL----------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQRE--  124 (397)
T ss_pred             ccCCC----CCCCCCcceeeeeccc----------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceeccc--
Confidence            55554    8899999999999998          88999999999999 999999999999999998888 666553  


Q ss_pred             ccEEEEcCC-CCccchHHHhhccCCCCcEEEEEEeCCccCCCC--CCCCCCCcceEEEEEEEeeEEeeeeecCCCcEEEE
Q 006908          196 EPYFFTFGK-SEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSP--LMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKR  272 (626)
Q Consensus       196 ~p~~~~~g~-g~~~~gle~~l~~mk~Ge~~~~~v~~~~~~g~~--~~~~ip~~~~l~~~v~l~~~~~~~d~~~dg~v~k~  272 (626)
                      ..|.|.+|+ ..+|.||+.+|..|++||.+.|+|+|+|+||..  .+|.||||++|.|+|+|++|....+          
T Consensus       125 ~~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~~~~~----------  194 (397)
T KOG0543|consen  125 LRFEFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGEPPLIPPNATLLYEVELLDFELKED----------  194 (397)
T ss_pred             cceEEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCCCCCCCCCceEEEEEEEEeeecCcc----------
Confidence            347888887 589999999999999999999999999999943  4588999999999999999952111          


Q ss_pred             EeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeeccCCCCCCEEEEcCCCc-chhhHHHHhhcCCCCCEEEEEec
Q 006908          273 RIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL-VPEGFEMCVRLMLPGEIALVTCP  351 (626)
Q Consensus       273 il~~G~G~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~dt~~~~~~~p~~f~lG~~~-v~~gle~~l~~M~~GE~~~~~i~  351 (626)
                            ....+     ....++.+..+.- ..|+.             -|..|.-. -..-.+.|+..|.          
T Consensus       195 ------~s~~~-----~~~e~l~~A~~~k-e~Gn~-------------~fK~gk~~~A~~~Yerav~~l~----------  239 (397)
T KOG0543|consen  195 ------ESWKM-----FAEERLEAADRKK-ERGNV-------------LFKEGKFKLAKKRYERAVSFLE----------  239 (397)
T ss_pred             ------ccccc-----chHHHHHHHHHHH-HhhhH-------------HHhhchHHHHHHHHHHHHHHhh----------
Confidence                  00000     0000000000000 00111             12222100 1112233332221          


Q ss_pred             CCCccccCCCCCCCCCCcceeeeeeecccccCCCCCCCChh-hHHH---HHHHHHhhhchhhccccHHHHHHHHHHHHHh
Q 006908          352 PDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFD-GIMD---EAEKIRVTGNRLFKEGKFELAKAKYEKVLRD  427 (626)
Q Consensus       352 ~~~ayg~~~~~~~ip~~~~l~~~vel~~~~~~~~~~~~~~~-e~~~---~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~  427 (626)
                          |.                             ...+.+ +...   ....+.+.+-.+.+.++|..|+....++|. 
T Consensus       240 ----~~-----------------------------~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe-  285 (397)
T KOG0543|consen  240 ----YR-----------------------------RSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE-  285 (397)
T ss_pred             ----cc-----------------------------ccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh-
Confidence                00                             000111 1111   223456788899999999999999999999 


Q ss_pred             cccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHH
Q 006908          428 FNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEA-QRDFEM  506 (626)
Q Consensus       428 l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA-~~~~~k  506 (626)
                         +.|.+           +.+++.+|.|++.+++|+.|+.++.+|++++|+|-.+...+..+..+..++.+. .+.|.+
T Consensus       286 ---~~~~N-----------~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~  351 (397)
T KOG0543|consen  286 ---LDPNN-----------VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYAN  351 (397)
T ss_pred             ---cCCCc-----------hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               77776           678999999999999999999999999999999977777777776666665554 555555


Q ss_pred             HHhc
Q 006908          507 MMKV  510 (626)
Q Consensus       507 Al~l  510 (626)
                      .+..
T Consensus       352 mF~k  355 (397)
T KOG0543|consen  352 MFAK  355 (397)
T ss_pred             Hhhc
Confidence            5544

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.7e-34  Score=267.56  Aligned_cols=275  Identities=27%  Similarity=0.378  Sum_probs=241.2

Q ss_pred             CcEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeeccCCCCCCEEEEcCCCcchhhHHHHhhcCCCCCEE
Q 006908          267 GRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIA  346 (626)
Q Consensus       267 g~v~k~il~~G~G~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~dt~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~  346 (626)
                      .+|.|+||..|.|..|..+  .|.+|++||.....++.+++++||+-  .|+|+++++|...-++.||.+|.+|+++|++
T Consensus        10 ~gv~Kril~~G~g~l~e~~--dGTrv~FHfrtl~~~e~~tviDDsRk--~gkPmeiiiGkkFkL~VwE~il~tM~v~Eva   85 (329)
T KOG0545|consen   10 EGVKKRILHGGTGELPEFI--DGTRVIFHFRTLKCDEERTVIDDSRK--VGKPMEIIIGKKFKLEVWEIILTTMRVHEVA   85 (329)
T ss_pred             hhhhHhhccCCCccCcccc--CCceEEEEEEecccCcccccccchhh--cCCCeEEeeccccccHHHHHHHHHHhhhhHH
Confidence            5789999999999988664  69999999999998888889999885  5899999999999999999999999999999


Q ss_pred             EEEecCCC--------------ccccCCCCC---------CC--------------CCCcceeeeeeecccccCC----C
Q 006908          347 LVTCPPDY--------------AYDKFLRPA---------NV--------------PEGAHIQWEIELLGFEKPK----D  385 (626)
Q Consensus       347 ~~~i~~~~--------------ayg~~~~~~---------~i--------------p~~~~l~~~vel~~~~~~~----~  385 (626)
                      .|+|.-..              +-|......         .+              -.=.+++|.++|+.+..|.    +
T Consensus        86 qF~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq~e  165 (329)
T KOG0545|consen   86 QFWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQRE  165 (329)
T ss_pred             HhhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhccc
Confidence            99984321              112211100         00              0015799999999998875    4


Q ss_pred             CCCCChhhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccC----CCCChhHHHHHhhhhhHHHHHHHHHHHHcC
Q 006908          386 WTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV----NPQDDEEGKVFVGKRNLLHLNVAACLLKLG  461 (626)
Q Consensus       386 ~~~~~~~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~----~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~  461 (626)
                      .|.|+.++++.....++++||.+|+.|+|.+|...|+.|+-.+.++    .|. +.+|..+......+++|.++|+++.+
T Consensus       166 ~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~-e~eW~eLdk~~tpLllNy~QC~L~~~  244 (329)
T KOG0545|consen  166 TWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPG-EPEWLELDKMITPLLLNYCQCLLKKE  244 (329)
T ss_pred             cccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCC-ChHHHHHHHhhhHHHHhHHHHHhhHH
Confidence            5789999999999999999999999999999999999999887765    343 35788888889999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006908          462 ECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFK  541 (626)
Q Consensus       462 ~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~  541 (626)
                      +|.+++++|+.+|..+|.|.||||+||+|+....+..+|.++|.++|+++|...+.+.++|..+..++++.+...|-.++
T Consensus       245 e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek~~edr~~~~  324 (329)
T KOG0545|consen  245 EYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEKQEEDRLRCR  324 (329)
T ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998889999999999999999999999999


Q ss_pred             ccccC
Q 006908          542 GLFDK  546 (626)
Q Consensus       542 ~~~~~  546 (626)
                      +||+.
T Consensus       325 kmfs~  329 (329)
T KOG0545|consen  325 KMFSQ  329 (329)
T ss_pred             HhcCC
Confidence            99973

>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=5.8e-28  Score=217.54  Aligned_cols=171  Identities=21%  Similarity=0.296  Sum_probs=141.0

Q ss_pred             EEeCCCccchhHHhhcCCCCCCcEEEEEeeccccccCCCCCCCCCCCCCCCceEEEEEEeeeeccccccc---ccccEEE
Q 006908           81 HVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIA---DDFGVVK  157 (626)
Q Consensus        81 ~~lg~~~~~~gle~~l~~m~~Ge~~~~~ip~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~~~~~~v~---~D~~v~~  157 (626)
                      |++|.+++++|++.+|.+|..|++..+.+||+++||..+..        .-..++|.+.++.+.......   .+..+..
T Consensus         1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~I   72 (188)
T KOG0549|consen    1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRG--------DLNILVITILLVLLFRASAAEKWNPDEELQI   72 (188)
T ss_pred             CcccceEEecCHHHHhhhhhccccceeccCCcccccccccc--------cccceEEEeeeeehhhhhhhhhcCCCCceeE
Confidence            35788999999999999999999999999999999966543        124577888877764332222   2333433


Q ss_pred             EEeecCC-CcCCCCCCCeEEEEEEEEeCCCcEEEecC-CCccEEEEcCCCCccchHHHhhccCCCCcEEEEEEeCCccCC
Q 006908          158 KVINEGQ-GWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTP  235 (626)
Q Consensus       158 ~i~~~G~-g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~~~~~~g  235 (626)
                      .+++.-. .....+.||.|.+||++.+.||++||||. ++.|++|.||.|++|+||++||.+|++||++.+.|||+++||
T Consensus        73 ~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~LgYG  152 (188)
T KOG0549|consen   73 GVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHLGYG  152 (188)
T ss_pred             EEEECCccccccccCCCEEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccccCc
Confidence            4443311 23778999999999999999999999985 688999999999999999999999999999999999999999


Q ss_pred             CCC-CCCCCCcceEEEEEEEeeEEe
Q 006908          236 SPL-MPVVEGCEEVHFEVELVHLIQ  259 (626)
Q Consensus       236 ~~~-~~~ip~~~~l~~~v~l~~~~~  259 (626)
                      +.+ ++.||+++.|+|+|+|.++.+
T Consensus       153 ~~G~~~~IP~~A~LiFdiELv~i~~  177 (188)
T KOG0549|consen  153 ERGAPPKIPGDAVLIFDIELVKIER  177 (188)
T ss_pred             cCCCCCCCCCCeeEEEEEEEEEeec
Confidence            876 456999999999999999864

>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=3.8e-27  Score=212.28  Aligned_cols=174  Identities=24%  Similarity=0.335  Sum_probs=143.2

Q ss_pred             EEcCCCCccchHHHhhccCCCCcEEEEEEeCCccCCCCCCCCCCCcceEEEEEEEeeEEeee---eecCCCcEEEEEeeC
Q 006908          200 FTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQVR---DMLGDGRLIKRRIRD  276 (626)
Q Consensus       200 ~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~ip~~~~l~~~v~l~~~~~~~---d~~~dg~v~k~il~~  276 (626)
                      |++|.+.+|||++++|.+|+.|+++.+.+||+++||..+.   ..--.++|.+.+..++...   ....+..+.-.++++
T Consensus         1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~I~v~~~   77 (188)
T KOG0549|consen    1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGR---GDLNILVITILLVLLFRASAAEKWNPDEELQIGVLKK   77 (188)
T ss_pred             CcccceEEecCHHHHhhhhhccccceeccCCccccccccc---ccccceEEEeeeeehhhhhhhhhcCCCCceeEEEEEC
Confidence            3578999999999999999999999999999999994322   1223467777777776542   233445566666665


Q ss_pred             CC-CCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeeccCCCCCCEEEEcCCCcchhhHHHHhhcCCCCCEEEEEecCCCc
Q 006908          277 GK-GEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYA  355 (626)
Q Consensus       277 G~-G~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~dt~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~~~i~~~~a  355 (626)
                      -. ...   ....||.|.+||+|.+.|  |++| ||++. +++|+.|.||.++||+||+.+|.+|++||+..++|||+++
T Consensus        78 p~~C~~---kak~GD~l~~HY~g~leD--Gt~f-dSS~~-rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~Lg  150 (188)
T KOG0549|consen   78 PEECPE---KAKKGDTLHVHYTGSLED--GTKF-DSSYS-RGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHLG  150 (188)
T ss_pred             Cccccc---cccCCCEEEEEEEEEecC--CCEE-eeecc-CCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCcccc
Confidence            22 221   236899999999999987  9998 55665 6899999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCCCCcceeeeeeecccccC
Q 006908          356 YDKFLRPANVPEGAHIQWEIELLGFEKP  383 (626)
Q Consensus       356 yg~~~~~~~ip~~~~l~~~vel~~~~~~  383 (626)
                      ||+.|.++.||++++|.|+|||+.+...
T Consensus       151 YG~~G~~~~IP~~A~LiFdiELv~i~~~  178 (188)
T KOG0549|consen  151 YGERGAPPKIPGDAVLIFDIELVKIERG  178 (188)
T ss_pred             CccCCCCCCCCCCeeEEEEEEEEEeecC
Confidence            9999999999999999999999998764

>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=3.1e-25  Score=175.78  Aligned_cols=106  Identities=30%  Similarity=0.608  Sum_probs=102.0

Q ss_pred             ceEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCCCcEEEEEe
Q 006908           30 SLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKM  109 (626)
Q Consensus        30 gv~~~i~~~G~G~~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge~~~~~i  109 (626)
                      ||.++++.+|+|...|+.|+.|++||++.+.||+.|+||.+    ++.|+.|.+|.+++|.||++++..|.+||++.++|
T Consensus         2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~d----r~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti   77 (108)
T KOG0544|consen    2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRD----RGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTI   77 (108)
T ss_pred             CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccc----cCCCeeEEecCcceeechhhcchhccccccceeee
Confidence            68999999999988899999999999999999999999998    88999999999999999999999999999999999


Q ss_pred             eccccccCCCCCCCCCCCCCCCceEEEEEEeeee
Q 006908          110 KPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF  143 (626)
Q Consensus       110 p~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~  143 (626)
                      +|++|||..|.|    ..||||++|+|+|+|+++
T Consensus        78 ~pd~aYG~~G~p----~~IppNatL~FdVEll~v  107 (108)
T KOG0544|consen   78 SPDYAYGPRGHP----GGIPPNATLVFDVELLKV  107 (108)
T ss_pred             ccccccCCCCCC----CccCCCcEEEEEEEEEec
Confidence            999999999964    899999999999999986

>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.3e-24  Score=172.19  Aligned_cols=106  Identities=36%  Similarity=0.600  Sum_probs=98.1

Q ss_pred             cEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeeccCCCCCCEEEEcCCCcchhhHHHHhhcCCCCCEEE
Q 006908          268 RLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIAL  347 (626)
Q Consensus       268 ~v~k~il~~G~G~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~dt~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~  347 (626)
                      ++.+.+|.+|+|..   .|.+|++|++||+|.+.|  |+.| ||+.+ +++||.|.+|.++||.||+.++..|.+||++.
T Consensus         2 Gv~~~~i~~Gdg~t---fpK~Gqtvt~hYtg~L~d--G~kf-DSs~d-r~kPfkf~IGkgeVIkGwdegv~qmsvGekak   74 (108)
T KOG0544|consen    2 GVEKQVISPGDGRT---FPKKGQTVTVHYTGTLQD--GKKF-DSSRD-RGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAK   74 (108)
T ss_pred             CceeEEeeCCCCcc---cCCCCCEEEEEEEeEecC--CcEe-ecccc-cCCCeeEEecCcceeechhhcchhccccccce
Confidence            36788999999964   378999999999999987  9998 66667 78999999999999999999999999999999


Q ss_pred             EEecCCCccccCCCCCCCCCCcceeeeeeeccc
Q 006908          348 VTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF  380 (626)
Q Consensus       348 ~~i~~~~ayg~~~~~~~ip~~~~l~~~vel~~~  380 (626)
                      ++|+|+||||..|.+..||||++|.|+|||+++
T Consensus        75 Lti~pd~aYG~~G~p~~IppNatL~FdVEll~v  107 (108)
T KOG0544|consen   75 LTISPDYAYGPRGHPGGIPPNATLVFDVELLKV  107 (108)
T ss_pred             eeeccccccCCCCCCCccCCCcEEEEEEEEEec
Confidence            999999999999999999999999999999976

>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.4e-24  Score=200.59  Aligned_cols=113  Identities=31%  Similarity=0.629  Sum_probs=106.4

Q ss_pred             cccCceecCCceEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCC
Q 006908           20 DKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTM   99 (626)
Q Consensus        20 ~~~~~~~~~~gv~~~i~~~G~G~~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m   99 (626)
                      .+-.++++++||.|++++.|+|.. |..+|.|.|||++++.||++||||++    ++.|+.|.||  ++|+||.++|.+|
T Consensus        92 k~~~v~~~~sgl~y~~~~~G~G~~-~~~~~~V~vhY~G~l~~G~vFDsS~~----rg~p~~f~l~--~vI~Gw~egl~~M  164 (205)
T COG0545          92 KEKGVKTLPSGLQYKVLKAGDGAA-PKKGDTVTVHYTGTLIDGTVFDSSYD----RGQPAEFPLG--GVIPGWDEGLQGM  164 (205)
T ss_pred             ccCCceECCCCcEEEEEeccCCCC-CCCCCEEEEEEEEecCCCCccccccc----cCCCceeecC--CeeehHHHHHhhC
Confidence            345678899999999999999988 99999999999999999999999998    8999999996  9999999999999


Q ss_pred             CCCcEEEEEeeccccccCCCCCCCCCCCCCCCceEEEEEEeeee
Q 006908          100 LKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF  143 (626)
Q Consensus       100 ~~Ge~~~~~ip~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~  143 (626)
                      ++|++++++|||++|||..|.+    +.||||++|+|+|+|+++
T Consensus       165 ~vG~k~~l~IP~~laYG~~g~~----g~Ippns~LvFeVeLl~v  204 (205)
T COG0545         165 KVGGKRKLTIPPELAYGERGVP----GVIPPNSTLVFEVELLDV  204 (205)
T ss_pred             CCCceEEEEeCchhccCcCCCC----CCCCCCCeEEEEEEEEec
Confidence            9999999999999999999874    559999999999999987

>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=1.6e-22  Score=186.95  Aligned_cols=104  Identities=24%  Similarity=0.341  Sum_probs=98.7

Q ss_pred             ccccEEEEEeecCCCcCCCCCCCeEEEEEEEEeCCCcEEEec-CCCccEEEEcCCCCccchHHHhhccCCCCcEEEEEEe
Q 006908          151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSH-REGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT  229 (626)
Q Consensus       151 ~D~~v~~~i~~~G~g~~~~~~g~~V~v~y~~~~~~g~~~~s~-~~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~  229 (626)
                      ..+|+.+.+++.|.| ..|+.++.|+|||++++.||++|||+ .++.|+.|.+|  ++|+||.+||.+|++|++++++||
T Consensus        99 ~~sgl~y~~~~~G~G-~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~~l~IP  175 (205)
T COG0545          99 LPSGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKLTIP  175 (205)
T ss_pred             CCCCcEEEEEeccCC-CCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHhhCCCCceEEEEeC
Confidence            667999999999999 89999999999999999999999998 68999999998  999999999999999999999999


Q ss_pred             CCccCCCCCCCC-CCCcceEEEEEEEeeE
Q 006908          230 SQYLTPSPLMPV-VEGCEEVHFEVELVHL  257 (626)
Q Consensus       230 ~~~~~g~~~~~~-ip~~~~l~~~v~l~~~  257 (626)
                      |++|||..+.+. ||||++|+|+|+|+++
T Consensus       176 ~~laYG~~g~~g~Ippns~LvFeVeLl~v  204 (205)
T COG0545         176 PELAYGERGVPGVIPPNSTLVFEVELLDV  204 (205)
T ss_pred             chhccCcCCCCCCCCCCCeEEEEEEEEec
Confidence            999999988544 9999999999999986

>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.86  E-value=4e-21  Score=184.62  Aligned_cols=113  Identities=24%  Similarity=0.451  Sum_probs=106.0

Q ss_pred             cccCceecCCceEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCC
Q 006908           20 DKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTM   99 (626)
Q Consensus        20 ~~~~~~~~~~gv~~~i~~~G~G~~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m   99 (626)
                      .+.+++++++|+.|+++++|+|.. |..||.|.|||++++.||++|+||+.    .+.|+.|.+|  ++++||+++|.+|
T Consensus        93 k~~gv~~t~sGl~y~vi~~G~G~~-p~~~d~V~v~Y~g~l~dG~vfdss~~----~g~P~~f~l~--~vipG~~eaL~~M  165 (206)
T PRK11570         93 KKEGVNSTESGLQFRVLTQGEGAI-PARTDRVRVHYTGKLIDGTVFDSSVA----RGEPAEFPVN--GVIPGWIEALTLM  165 (206)
T ss_pred             hcCCcEECCCCcEEEEEeCCCCCC-CCCCCEEEEEEEEEECCCCEEEeccC----CCCCeEEEee--chhhHHHHHHcCC
Confidence            356889999999999999999986 99999999999999999999999997    6789999995  7999999999999


Q ss_pred             CCCcEEEEEeeccccccCCCCCCCCCCCCCCCceEEEEEEeeee
Q 006908          100 LKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF  143 (626)
Q Consensus       100 ~~Ge~~~~~ip~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~  143 (626)
                      ++|+++.|+|||+++||..+.+    +.|||+++|+|+|+|++|
T Consensus       166 ~~G~k~~~~IP~~lAYG~~g~~----~~Ipp~s~Lif~veLl~i  205 (206)
T PRK11570        166 PVGSKWELTIPHELAYGERGAG----ASIPPFSTLVFEVELLEI  205 (206)
T ss_pred             CCCCEEEEEECHHHcCCCCCCC----CCcCCCCeEEEEEEEEEE
Confidence            9999999999999999999874    789999999999999987

>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=6.1e-21  Score=181.25  Aligned_cols=120  Identities=23%  Similarity=0.460  Sum_probs=109.8

Q ss_pred             CCCCCcccccCceecCCceEEEEEecCCCCCCCCCCCEEEEEEEEEEc-CCcEEEeeccCCCCCCcceE-EEeCCCccch
Q 006908           13 KKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTL-DGVIVESTRSEYGGKGIPIR-HVLGKSKILL   90 (626)
Q Consensus        13 ~~~~~~~~~~~~~~~~~gv~~~i~~~G~G~~~p~~gd~V~v~y~~~~~-dG~~~~st~~~~~~~~~p~~-~~lg~~~~~~   90 (626)
                      .+.+.++...-..+.++||.|.-++.|.|.. |..|++|.+||.+++. +|++|++++.     +.|+. |.+|.+++|+
T Consensus       104 ~~~~~ek~~~~~~tl~~Gl~y~D~~vG~G~~-a~~G~rV~v~Y~Gkl~~~GkvFd~~~~-----~kp~~~f~lg~g~VIk  177 (226)
T KOG0552|consen  104 ISKEVEKQKPKSRTLPGGLRYEDLRVGSGPS-AKKGKRVSVRYIGKLKGNGKVFDSNFG-----GKPFKLFRLGSGEVIK  177 (226)
T ss_pred             ccccccccCccceecCCCcEEEEEEecCCCC-CCCCCEEEEEEEEEecCCCeEeecccC-----CCCccccccCCCCCCc
Confidence            3445566666568999999999999999987 9999999999999998 9999999984     67888 9999999999


Q ss_pred             hHHhhcCCCCCCcEEEEEeeccccccCCCCCCCCCCCCCCCceEEEEEEeeee
Q 006908           91 GLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF  143 (626)
Q Consensus        91 gle~~l~~m~~Ge~~~~~ip~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~  143 (626)
                      ||+.+|.+|++|.+++|+|||+++||..+.     +.||||++|+|+|+|+.+
T Consensus       178 G~d~gv~GMkvGGkRrviIPp~lgYg~~g~-----~~IppnstL~fdVEL~~v  225 (226)
T KOG0552|consen  178 GWDVGVEGMKVGGKRRVIIPPELGYGKKGV-----PEIPPNSTLVFDVELLSV  225 (226)
T ss_pred             hHHHhhhhhccCCeeEEEeCccccccccCc-----CcCCCCCcEEEEEEEEec
Confidence            999999999999999999999999999988     589999999999999986

>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated

Probab=99.83  E-value=7.9e-20  Score=171.42  Aligned_cols=112  Identities=19%  Similarity=0.331  Sum_probs=102.1

Q ss_pred             CceecCCceEEEEEec--CCCCCCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCC
Q 006908           23 RMKIVPGSLMKAVMRP--GGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTML  100 (626)
Q Consensus        23 ~~~~~~~gv~~~i~~~--G~G~~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~  100 (626)
                      .-..+++|++|.++..  |+|.. |+.||.|++||++++.||++|+|++.     ..|+.|.+|.+++++||+++|.+|+
T Consensus        63 ~~~~t~sGl~Y~v~~~~~g~g~~-p~~gd~V~v~Y~~~~~dG~v~~ss~~-----~~P~~f~vg~~~vi~Gl~e~L~~Mk  136 (177)
T TIGR03516        63 KYETSQNGFWYYYNQKDTGEGTT-PEFGDLVTFEYDIRALDGDVIYSEEE-----LGPQTYKVDQQDLFSGLRDGLKLMK  136 (177)
T ss_pred             CceECCCccEEEEEEecCCCCCc-CCCCCEEEEEEEEEeCCCCEEEeCCC-----CCCEEEEeCCcchhHHHHHHHcCCC
Confidence            3477999999999977  55555 89999999999999999999999985     3499999999999999999999999


Q ss_pred             CCcEEEEEeeccccccCCCCCCCCCCCCCCCceEEEEEEeeeec
Q 006908          101 KGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA  144 (626)
Q Consensus       101 ~Ge~~~~~ip~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~~  144 (626)
                      +||+++|+|||++|||..|.+    ..||||++|+|+|+|++|.
T Consensus       137 ~Ge~~~~~iP~~~AYG~~g~~----~~Ippns~L~f~IeL~~i~  176 (177)
T TIGR03516       137 EGETATFLFPSHKAYGYYGDQ----NKIGPNLPIISTVTLLNIK  176 (177)
T ss_pred             CCCEEEEEECHHHcCCCCCCC----CCcCcCCcEEEEEEEEEec
Confidence            999999999999999998864    6799999999999999985

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.82  E-value=5.9e-20  Score=179.53  Aligned_cols=125  Identities=27%  Similarity=0.471  Sum_probs=118.3

Q ss_pred             hHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006908          393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK  472 (626)
Q Consensus       393 e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~  472 (626)
                      +....|+.+|.+||.+++.++|.+|+.+|++||.    +.|.+           +.+|+|+|++|.++|+|..|+++|..
T Consensus        76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~----l~P~n-----------AVyycNRAAAy~~Lg~~~~AVkDce~  140 (304)
T KOG0553|consen   76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIE----LDPTN-----------AVYYCNRAAAYSKLGEYEDAVKDCES  140 (304)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh----cCCCc-----------chHHHHHHHHHHHhcchHHHHHHHHH
Confidence            6778999999999999999999999999999999    78877           67999999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 006908          473 VLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVE  533 (626)
Q Consensus       473 aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~  533 (626)
                      ||.+||.+.|||-|+|.||..+|+|++|++.|++||+++|+| ...+..|..+++++.+..
T Consensus       141 Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~N-e~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  141 ALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDN-ESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCc-HHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999999999999999999998 689999999988877654

>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=1.9e-19  Score=171.05  Aligned_cols=107  Identities=22%  Similarity=0.328  Sum_probs=102.2

Q ss_pred             cccccEEEEEeecCCCcCCCCCCCeEEEEEEEEeC-CCcEEEecCCCccEE-EEcCCCCccchHHHhhccCCCCcEEEEE
Q 006908          150 ADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTG-DGKLILSHREGEPYF-FTFGKSEVPKGLEMGIGTMTREEKAVIY  227 (626)
Q Consensus       150 ~~D~~v~~~i~~~G~g~~~~~~g~~V~v~y~~~~~-~g~~~~s~~~~~p~~-~~~g~g~~~~gle~~l~~mk~Ge~~~~~  227 (626)
                      +..+|+++.-++-|.| +.|..|+.|.|||.+++. +|.+|+++..+.|+. |.+|.+.+|+||+.++.+|++|++++|+
T Consensus       117 tl~~Gl~y~D~~vG~G-~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRrvi  195 (226)
T KOG0552|consen  117 TLPGGLRYEDLRVGSG-PSAKKGKRVSVRYIGKLKGNGKVFDSNFGGKPFKLFRLGSGEVIKGWDVGVEGMKVGGKRRVI  195 (226)
T ss_pred             ecCCCcEEEEEEecCC-CCCCCCCEEEEEEEEEecCCCeEeecccCCCCccccccCCCCCCchHHHhhhhhccCCeeEEE
Confidence            3467899999999999 999999999999999998 999999999999999 9999999999999999999999999999


Q ss_pred             EeCCccCCCCCCCCCCCcceEEEEEEEeeE
Q 006908          228 VTSQYLTPSPLMPVVEGCEEVHFEVELVHL  257 (626)
Q Consensus       228 v~~~~~~g~~~~~~ip~~~~l~~~v~l~~~  257 (626)
                      |||++|||..+.+.||+|++|+|+|+|+.+
T Consensus       196 IPp~lgYg~~g~~~IppnstL~fdVEL~~v  225 (226)
T KOG0552|consen  196 IPPELGYGKKGVPEIPPNSTLVFDVELLSV  225 (226)
T ss_pred             eCccccccccCcCcCCCCCcEEEEEEEEec
Confidence            999999999999999999999999999976

>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.80  E-value=3.6e-19  Score=177.29  Aligned_cols=116  Identities=24%  Similarity=0.500  Sum_probs=106.3

Q ss_pred             cccCceecCCceEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCC
Q 006908           20 DKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTM   99 (626)
Q Consensus        20 ~~~~~~~~~~gv~~~i~~~G~G~~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m   99 (626)
                      .+.+++++++|++|+|+++|+|.. |..||.|.|||++++.||++|+|++.    .+.|+.|.+  ++++|||+++|.+|
T Consensus       137 k~~gv~~t~sGl~y~Vi~~G~G~~-p~~gD~V~V~Y~g~l~dG~vfdss~~----~g~p~~f~l--~~vipG~~EaL~~M  209 (269)
T PRK10902        137 KEKGVKTTSTGLLYKVEKEGTGEA-PKDSDTVVVNYKGTLIDGKEFDNSYT----RGEPLSFRL--DGVIPGWTEGLKNI  209 (269)
T ss_pred             cCCCcEECCCccEEEEEeCCCCCC-CCCCCEEEEEEEEEeCCCCEeecccc----CCCceEEec--CCcchHHHHHHhcC
Confidence            456788999999999999999986 99999999999999999999999987    678999988  47999999999999


Q ss_pred             CCCcEEEEEeeccccccCCCCCCCCCCCCCCCceEEEEEEeeeecccc
Q 006908          100 LKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAK  147 (626)
Q Consensus       100 ~~Ge~~~~~ip~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~~~~~  147 (626)
                      ++|+++.|+||++++||..+.     ++|||+++|+|+|+|+++.+..
T Consensus       210 k~Gek~~l~IP~~laYG~~g~-----~gIppns~LvfeVeLl~V~~~~  252 (269)
T PRK10902        210 KKGGKIKLVIPPELAYGKAGV-----PGIPANSTLVFDVELLDVKPAP  252 (269)
T ss_pred             CCCcEEEEEECchhhCCCCCC-----CCCCCCCcEEEEEEEEEeccCc
Confidence            999999999999999999875     4699999999999999997543

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.79  E-value=1.9e-18  Score=158.35  Aligned_cols=136  Identities=32%  Similarity=0.560  Sum_probs=121.7

Q ss_pred             hhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHH
Q 006908          392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN  471 (626)
Q Consensus       392 ~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~  471 (626)
                      +..+..+..+|..||.+|+.|+|.+|...|+.||..++.+.          .+.+..||.|+|.|++|++.|..|+..|+
T Consensus        89 ~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~----------~e~rsIly~Nraaa~iKl~k~e~aI~dcs  158 (271)
T KOG4234|consen   89 DKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS----------TEERSILYSNRAAALIKLRKWESAIEDCS  158 (271)
T ss_pred             HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc----------HHHHHHHHhhhHHHHHHhhhHHHHHHHHH
Confidence            44578899999999999999999999999999999655432          34567899999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 006908          472 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARK  538 (626)
Q Consensus       472 ~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~  538 (626)
                      +||+++|.+.+|+.|||.+|.++..|++|+.+|++.++++|.+ ..++..+.+|..++.+.+++.+.
T Consensus       159 Kaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~-~ear~~i~rl~~~i~ernEkmKe  224 (271)
T KOG4234|consen  159 KAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSR-REAREAIARLPPKINERNEKMKE  224 (271)
T ss_pred             hhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch-HHHHHHHHhcCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999997 58999999888877766655443

>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated

Probab=99.78  E-value=1.7e-18  Score=162.50  Aligned_cols=107  Identities=20%  Similarity=0.157  Sum_probs=97.8

Q ss_pred             ccccEEEEEeec--CCCcCCCCCCCeEEEEEEEEeCCCcEEEecCCCccEEEEcCCCCccchHHHhhccCCCCcEEEEEE
Q 006908          151 DDFGVVKKVINE--GQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYV  228 (626)
Q Consensus       151 ~D~~v~~~i~~~--G~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v  228 (626)
                      ...|+.+.+++.  |.| ..|+.||.|++||++++.+|++|+|+....|+.|.+|.+++++||+++|.+|++||+++|+|
T Consensus        67 t~sGl~Y~v~~~~~g~g-~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~~~~i  145 (177)
T TIGR03516        67 SQNGFWYYYNQKDTGEG-TTPEFGDLVTFEYDIRALDGDVIYSEEELGPQTYKVDQQDLFSGLRDGLKLMKEGETATFLF  145 (177)
T ss_pred             CCCccEEEEEEecCCCC-CcCCCCCEEEEEEEEEeCCCCEEEeCCCCCCEEEEeCCcchhHHHHHHHcCCCCCCEEEEEE
Confidence            556888988876  555 78999999999999999999999998777899999999999999999999999999999999


Q ss_pred             eCCccCCCCCC-CCCCCcceEEEEEEEeeEE
Q 006908          229 TSQYLTPSPLM-PVVEGCEEVHFEVELVHLI  258 (626)
Q Consensus       229 ~~~~~~g~~~~-~~ip~~~~l~~~v~l~~~~  258 (626)
                      ||+.|||..+. +.||+|++|+|+|+|+++.
T Consensus       146 P~~~AYG~~g~~~~Ippns~L~f~IeL~~i~  176 (177)
T TIGR03516       146 PSHKAYGYYGDQNKIGPNLPIISTVTLLNIK  176 (177)
T ss_pred             CHHHcCCCCCCCCCcCcCCcEEEEEEEEEec
Confidence            99999998654 6799999999999999984

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.

>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.76  E-value=5.8e-18  Score=162.81  Aligned_cols=105  Identities=22%  Similarity=0.288  Sum_probs=97.3

Q ss_pred             cccccEEEEEeecCCCcCCCCCCCeEEEEEEEEeCCCcEEEecC-CCccEEEEcCCCCccchHHHhhccCCCCcEEEEEE
Q 006908          150 ADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYV  228 (626)
Q Consensus       150 ~~D~~v~~~i~~~G~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v  228 (626)
                      ..++|+.++++++|.| ..|..+|.|.|||++++.||++|+|+. ++.|+.|.++  +++|||+++|.+|++|++++|+|
T Consensus        99 ~t~sGl~y~vi~~G~G-~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~G~k~~~~I  175 (206)
T PRK11570         99 STESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVGSKWELTI  175 (206)
T ss_pred             ECCCCcEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhhHHHHHHcCCCCCCEEEEEE
Confidence            3677999999999999 789999999999999999999999885 6799999995  79999999999999999999999


Q ss_pred             eCCccCCCCCC-CCCCCcceEEEEEEEeeE
Q 006908          229 TSQYLTPSPLM-PVVEGCEEVHFEVELVHL  257 (626)
Q Consensus       229 ~~~~~~g~~~~-~~ip~~~~l~~~v~l~~~  257 (626)
                      ||+.+||..+. +.|||+++|+|+|+|+++
T Consensus       176 P~~lAYG~~g~~~~Ipp~s~Lif~veLl~i  205 (206)
T PRK11570        176 PHELAYGERGAGASIPPFSTLVFEVELLEI  205 (206)
T ss_pred             CHHHcCCCCCCCCCcCCCCeEEEEEEEEEE
Confidence            99999998754 579999999999999986

>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5

Probab=99.74  E-value=1.5e-17  Score=140.97  Aligned_cols=94  Identities=36%  Similarity=0.639  Sum_probs=86.4

Q ss_pred             CCCCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCCCcEEEEEeeccccccCCCC
Q 006908           41 GDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDC  120 (626)
Q Consensus        41 G~~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge~~~~~ip~~~~~g~~~~  120 (626)
                      |+++|+.||.|.+||++++.+|++|++++.    .+.|+.|.+|.+++++||+++|.+|++|+++.|.||++++||..+.
T Consensus         1 ~~~~~~~gd~V~i~y~~~~~~g~~~~~~~~----~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~   76 (94)
T PF00254_consen    1 GPRTPKEGDTVTIHYTGRLEDGKVFDSSYQ----EGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGL   76 (94)
T ss_dssp             SSSSBSTTSEEEEEEEEEETTSEEEEETTT----TTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTB
T ss_pred             CCccCCCCCEEEEEEEEEECCCcEEEEeee----cCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCcccc
Confidence            556699999999999999999999999976    6789999999999999999999999999999999999999999876


Q ss_pred             CCCCCCCCCCCceEEEEEEee
Q 006908          121 PVAAPSTFPKDEELHFEIEMI  141 (626)
Q Consensus       121 ~~~~~~~i~~~~~lv~~v~l~  141 (626)
                      .   +..||++++|+|+|+|+
T Consensus        77 ~---~~~ip~~~~l~f~Iell   94 (94)
T PF00254_consen   77 E---PPKIPPNSTLVFEIELL   94 (94)
T ss_dssp             C---TTTBTTTSEEEEEEEEE
T ss_pred             C---CCCcCCCCeEEEEEEEC
Confidence            3   24599999999999985

2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....

>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5

Probab=99.71  E-value=1.1e-16  Score=135.67  Aligned_cols=90  Identities=30%  Similarity=0.432  Sum_probs=83.2

Q ss_pred             cCCCCCCCeEEEEEEEEeCCCcEEEec-CCCccEEEEcCCCCccchHHHhhccCCCCcEEEEEEeCCccCCCCCC--CCC
Q 006908          166 WETPRAPYEVKAWISAKTGDGKLILSH-REGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLM--PVV  242 (626)
Q Consensus       166 ~~~~~~g~~V~v~y~~~~~~g~~~~s~-~~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~~~~~~g~~~~--~~i  242 (626)
                      ...|+.||.|++||++++.+|++|+++ ..+.|+.|.+|.+++++||+++|.+|++||+++|+|||+.+||..+.  ..|
T Consensus         2 ~~~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~~~i   81 (94)
T PF00254_consen    2 PRTPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEPPKI   81 (94)
T ss_dssp             SSSBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCTTTB
T ss_pred             CccCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCCCCc
Confidence            356999999999999999999999988 47899999999999999999999999999999999999999997654  459


Q ss_pred             CCcceEEEEEEEe
Q 006908          243 EGCEEVHFEVELV  255 (626)
Q Consensus       243 p~~~~l~~~v~l~  255 (626)
                      |++++|+|+|+|+
T Consensus        82 p~~~~l~f~Iell   94 (94)
T PF00254_consen   82 PPNSTLVFEIELL   94 (94)
T ss_dssp             TTTSEEEEEEEEE
T ss_pred             CCCCeEEEEEEEC
Confidence            9999999999985

2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....

>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.70  E-value=1.3e-16  Score=158.96  Aligned_cols=107  Identities=23%  Similarity=0.340  Sum_probs=99.1

Q ss_pred             cccccEEEEEeecCCCcCCCCCCCeEEEEEEEEeCCCcEEEecC-CCccEEEEcCCCCccchHHHhhccCCCCcEEEEEE
Q 006908          150 ADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYV  228 (626)
Q Consensus       150 ~~D~~v~~~i~~~G~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v  228 (626)
                      ..++|+.|+|+++|.| ..|+.||.|.|||++++.||++|+|+. ++.|+.|.++  .++|||+++|.+|++|+++.|+|
T Consensus       143 ~t~sGl~y~Vi~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l~--~vipG~~EaL~~Mk~Gek~~l~I  219 (269)
T PRK10902        143 TTSTGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLVI  219 (269)
T ss_pred             ECCCccEEEEEeCCCC-CCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEecC--CcchHHHHHHhcCCCCcEEEEEE
Confidence            3677999999999999 789999999999999999999999874 6789999885  79999999999999999999999


Q ss_pred             eCCccCCCCCCCCCCCcceEEEEEEEeeEEe
Q 006908          229 TSQYLTPSPLMPVVEGCEEVHFEVELVHLIQ  259 (626)
Q Consensus       229 ~~~~~~g~~~~~~ip~~~~l~~~v~l~~~~~  259 (626)
                      |++++||..+.+.||++++|+|+|+|+++..
T Consensus       220 P~~laYG~~g~~gIppns~LvfeVeLl~V~~  250 (269)
T PRK10902        220 PPELAYGKAGVPGIPANSTLVFDVELLDVKP  250 (269)
T ss_pred             CchhhCCCCCCCCCCCCCcEEEEEEEEEecc
Confidence            9999999988788999999999999999853

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.62  E-value=1.5e-15  Score=149.76  Aligned_cols=121  Identities=26%  Similarity=0.432  Sum_probs=111.0

Q ss_pred             hhhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHH
Q 006908          391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEAC  470 (626)
Q Consensus       391 ~~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~  470 (626)
                      .++.+..+..++++||.||++|+|++|+.||.+++.    +.|.+           ..+|.|+|.+|++++.|..|..+|
T Consensus        90 ~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia----~~P~N-----------pV~~~NRA~AYlk~K~FA~AE~DC  154 (536)
T KOG4648|consen   90 AQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIA----VYPHN-----------PVYHINRALAYLKQKSFAQAEEDC  154 (536)
T ss_pred             HHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhc----cCCCC-----------ccchhhHHHHHHHHHHHHHHHHhH
Confidence            467788899999999999999999999999999999    66655           458999999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006908          471 NKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (626)
Q Consensus       471 ~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~  527 (626)
                      +.|+.+|....|||-|||.|...||...+|.++++.+|+|.|++ .++++.++.+..
T Consensus       155 ~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~-~ELkK~~a~i~S  210 (536)
T KOG4648|consen  155 EAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKN-IELKKSLARINS  210 (536)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCccc-HHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999997 567777776654

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=2.8e-15  Score=149.47  Aligned_cols=244  Identities=25%  Similarity=0.371  Sum_probs=176.7

Q ss_pred             eEEEEEEEEEecCCCcEEEeeccCC---CCCCEEEEcCCCcchhhHHHH--hhcCCCCCE----EEEEecC--CCccc--
Q 006908          291 LLCVHYKGMLLNEEKKVFYDTRVDN---DGQPLEFSSGEGLVPEGFEMC--VRLMLPGEI----ALVTCPP--DYAYD--  357 (626)
Q Consensus       291 ~V~v~y~~~~~~~~g~~~~dt~~~~---~~~p~~f~lG~~~v~~gle~~--l~~M~~GE~----~~~~i~~--~~ayg--  357 (626)
                      ++++.-.|  +|++|+.||.|+...   +|..++|    |+||.|.+.+  +...+..+.    +.|.|..  ++.-+  
T Consensus       110 lLSMAN~G--pNTNgSQFFITT~p~PHLdGkHVVF----GqVI~G~~VVr~IEn~~~d~~skP~~dV~I~dCGel~~~~~  183 (372)
T KOG0546|consen  110 LLSMANRG--PNTNGSQFFITTVPTPHLDGKHVVF----GQVIKGKEVVREIENLETDEESKPLADVVISDCGELVKKSK  183 (372)
T ss_pred             hhhhhcCC--CCCCCcceEEeCCCCCCcCCceeEE----eeEeechhHHHHHhccccccCCCCccceEeccccccccccc
Confidence            44555555  678899999998765   5777777    5677776633  334444333    2233311  11111  


Q ss_pred             -cCCCCCCCCCCcceeeeeeeccccc-CCCCCCCChhhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCC
Q 006908          358 -KFLRPANVPEGAHIQWEIELLGFEK-PKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQD  435 (626)
Q Consensus       358 -~~~~~~~ip~~~~l~~~vel~~~~~-~~~~~~~~~~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~  435 (626)
                       .......-+......+.    ++.. ...|...+....+..++..++.||..|++++|..|...|.++++++......+
T Consensus       184 ~~~~~~a~~~~~sgd~~~----d~p~~~~~~~~~~~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~  259 (372)
T KOG0546|consen  184 VKEDAGASEPDETGDSYE----DYPKDDRSWDDKDFDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDR  259 (372)
T ss_pred             ccccccCCCCCCCCCccc----ccccccccccccccchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhccccccc
Confidence             00000001111111111    1110 12233445677888999999999999999999999999999999887522222


Q ss_pred             hhH----HHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006908          436 DEE----GKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (626)
Q Consensus       436 ~ee----~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~  511 (626)
                      ..+    ...+..++..++.|+|.|-++++.|..|+..|..+++.++...+||||++++++.+.++++|+++++.|....
T Consensus       260 ~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~  339 (372)
T KOG0546|consen  260 EKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKA  339 (372)
T ss_pred             ccccccccccccccccccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccC
Confidence            111    1235677888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Q 006908          512 KSSEPDATAALSKLKKQRQEVESKARKQFKGLFD  545 (626)
Q Consensus       512 P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  545 (626)
                      |++ ..+...+...+++..++..++++.+.+||.
T Consensus       340 p~d-~~i~~~~~~~~~~~~~~~~~~~~~~~k~~s  372 (372)
T KOG0546|consen  340 PND-KAIEEELENVRQKKKQYNRKQKKALSKMFS  372 (372)
T ss_pred             cch-HHHHHHHHHhhhHHHHHHHHHHHHHHhhcC
Confidence            997 789999999999999999999999999874

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=7.1e-15  Score=151.16  Aligned_cols=109  Identities=31%  Similarity=0.536  Sum_probs=99.9

Q ss_pred             CCCChhhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHH
Q 006908          387 TGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS  466 (626)
Q Consensus       387 ~~~~~~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A  466 (626)
                      ..++.++++..|..+|.+||.+|++|+|++||++|++||.    +.|+.           ...|.|+|+||..+|+|.+.
T Consensus       104 ~a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~----l~p~e-----------piFYsNraAcY~~lgd~~~V  168 (606)
T KOG0547|consen  104 KAMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIE----LCPDE-----------PIFYSNRAACYESLGDWEKV  168 (606)
T ss_pred             hccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHh----cCCCC-----------chhhhhHHHHHHHHhhHHHH
Confidence            3578889999999999999999999999999999999999    55553           46899999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908          467 IEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (626)
Q Consensus       467 ~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l  510 (626)
                      +++|++||+++|+.+|||+||+.||-.+|++.+|+.+..-..-+
T Consensus       169 ied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~  212 (606)
T KOG0547|consen  169 IEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCIL  212 (606)
T ss_pred             HHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHh
Confidence            99999999999999999999999999999999999998754433

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=5.5e-15  Score=154.25  Aligned_cols=115  Identities=30%  Similarity=0.543  Sum_probs=105.3

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +...++.||++|+.|+|..|+.+|++||.    ..|.+           ..+|+|+|.||.+++.|..|+.+|..+++++
T Consensus       358 A~e~r~kGne~Fk~gdy~~Av~~YteAIk----r~P~D-----------a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~  422 (539)
T KOG0548|consen  358 AEEEREKGNEAFKKGDYPEAVKHYTEAIK----RDPED-----------ARLYSNRAACYLKLGEYPEALKDAKKCIELD  422 (539)
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHh----cCCch-----------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            77888999999999999999999999999    77877           6799999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006908          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (626)
Q Consensus       478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~  528 (626)
                      |++.++|+|.|.|+..+.+|+.|++.|++++++||++ ..+...+.++...
T Consensus       423 p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~-~e~~~~~~rc~~a  472 (539)
T KOG0548|consen  423 PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSN-AEAIDGYRRCVEA  472 (539)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh-HHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999997 5565555555443

>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.56  E-value=7.6e-14  Score=128.57  Aligned_cols=83  Identities=27%  Similarity=0.397  Sum_probs=74.4

Q ss_pred             CCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCCCcEEEEEeeccccccCCCCCCCC
Q 006908           45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA  124 (626)
Q Consensus        45 p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge~~~~~ip~~~~~g~~~~~~~~  124 (626)
                      ++.||.|.+||++++.||++|+||+.    .+.|+.|.+|.+++++||+++|.+|++|++++|.|||+.|||..      
T Consensus         5 i~~~~~V~v~Y~~~~~dG~v~dst~~----~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~------   74 (156)
T PRK15095          5 VQSNSAVLVHFTLKLDDGSTAESTRN----NGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVP------   74 (156)
T ss_pred             cCCCCEEEEEEEEEeCCCCEEEECCC----CCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCC------
Confidence            68899999999999999999999986    57899999999999999999999999999999999999999975      


Q ss_pred             CCCCCCCceEEEEEEeeee
Q 006908          125 PSTFPKDEELHFEIEMIDF  143 (626)
Q Consensus       125 ~~~i~~~~~lv~~v~l~~~  143 (626)
                            +..++..+....+
T Consensus        75 ------d~~~v~~vp~~~f   87 (156)
T PRK15095         75 ------SPDLIQYFSRRDF   87 (156)
T ss_pred             ------ChHHEEEecHHHC
Confidence                  3556666665555

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=2.1e-14  Score=145.23  Aligned_cols=127  Identities=27%  Similarity=0.420  Sum_probs=112.7

Q ss_pred             hHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006908          393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK  472 (626)
Q Consensus       393 e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~  472 (626)
                      -.++..+.+++.||.+|++|+|..|.++|+.||.    +.|.+       .+..+.+|.|+|.+..++|+..+|+.+|+.
T Consensus       244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~----idP~n-------~~~naklY~nra~v~~rLgrl~eaisdc~~  312 (486)
T KOG0550|consen  244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN----IDPSN-------KKTNAKLYGNRALVNIRLGRLREAISDCNE  312 (486)
T ss_pred             hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc----CCccc-------cchhHHHHHHhHhhhcccCCchhhhhhhhh
Confidence            3466788899999999999999999999999999    78876       455688999999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 006908          473 VLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEV  532 (626)
Q Consensus       473 aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~  532 (626)
                      |+.+||...|||.++|+||+.+++|++|+++|++|+++.-+  ..+++.|..++..++..
T Consensus       313 Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s--~e~r~~l~~A~~aLkkS  370 (486)
T KOG0550|consen  313 ALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD--CEIRRTLREAQLALKKS  370 (486)
T ss_pred             hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--cchHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999765  45666776666555543

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=3.1e-14  Score=140.40  Aligned_cols=106  Identities=29%  Similarity=0.436  Sum_probs=97.8

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~  476 (626)
                      .|+.+|+.||.+|+.++|..|+.+|+++|.    ....+       ..+.+.+|.|+|+|++.+|+|..|+.+|++|+.+
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk----~kc~D-------~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~  148 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLK----KKCAD-------PDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL  148 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHh----hcCCC-------ccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            899999999999999999999999999998    55555       3456889999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (626)
Q Consensus       477 dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~  513 (626)
                      +|.+.||+||=|+|++.|.++.+|+.+++..+.++-.
T Consensus       149 ~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e  185 (390)
T KOG0551|consen  149 KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE  185 (390)
T ss_pred             CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            9999999999999999999999999999888877643

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.51  E-value=2.1e-13  Score=144.01  Aligned_cols=118  Identities=22%  Similarity=0.385  Sum_probs=108.3

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +..++.+|+.+|..|+|..|+.+|++||.    +.|.+           ..+|+|+|.||+++|+|.+|+.+|.+||.++
T Consensus         2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~----~~P~~-----------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~   66 (356)
T PLN03088          2 AKDLEDKAKEAFVDDDFALAVDLYTQAID----LDPNN-----------AELYADRAQANIKLGNFTEAVADANKAIELD   66 (356)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            34578899999999999999999999999    67766           4589999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 006908          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQE  531 (626)
Q Consensus       478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~  531 (626)
                      |.++.+|+++|.+|+.+|+|++|+..|++|++++|++ ..+...+..+..++..
T Consensus        67 P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~-~~~~~~l~~~~~kl~~  119 (356)
T PLN03088         67 PSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGD-SRFTKLIKECDEKIAE  119 (356)
T ss_pred             cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999998 6788888888777753

>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=1.4e-13  Score=125.75  Aligned_cols=83  Identities=27%  Similarity=0.436  Sum_probs=73.0

Q ss_pred             CCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCCCcEEEEEeeccccccCCCCCCCC
Q 006908           45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA  124 (626)
Q Consensus        45 p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge~~~~~ip~~~~~g~~~~~~~~  124 (626)
                      ++.||.|+++|++++.||++|++|..    ...|+.|.+|.+++++||+++|.+|.+|++.++.|||+.|||..      
T Consensus         3 i~k~~~V~i~Y~~~~~dg~v~Dtt~e----~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~------   72 (174)
T COG1047           3 IEKGDVVSLHYTLKVEDGEVVDTTDE----NYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEY------   72 (174)
T ss_pred             ccCCCEEEEEEEEEecCCcEEEcccc----cCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCC------
Confidence            67899999999999999999999975    46799999999999999999999999999999999999999986      


Q ss_pred             CCCCCCCceEEEEEEeeee
Q 006908          125 PSTFPKDEELHFEIEMIDF  143 (626)
Q Consensus       125 ~~~i~~~~~lv~~v~l~~~  143 (626)
                            +..++-.+.+-.+
T Consensus        73 ------~~~lvq~vp~~~F   85 (174)
T COG1047          73 ------DPDLVQRVPRDEF   85 (174)
T ss_pred             ------ChHHeEEecHHHh
Confidence                  3555555554444

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.49  E-value=7.1e-13  Score=150.99  Aligned_cols=135  Identities=27%  Similarity=0.393  Sum_probs=117.0

Q ss_pred             CCCCCcceeeeeeecccccCCCCCCCChhhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHh
Q 006908          364 NVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFV  443 (626)
Q Consensus       364 ~ip~~~~l~~~vel~~~~~~~~~~~~~~~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~  443 (626)
                      .+|+...+....++..+.. ...+.++.+++...+..+++.|+.+|+.|+|++|+..|++||.    +.|+.        
T Consensus        94 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~----~~p~~--------  160 (615)
T TIGR00990        94 TAPKNAPVEPADELPEIDE-SSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIE----CKPDP--------  160 (615)
T ss_pred             CCCCCCCCCccccccccch-hhcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCch--------
Confidence            3566666666666655544 3356789999999999999999999999999999999999999    55532        


Q ss_pred             hhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 006908          444 GKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (626)
Q Consensus       444 ~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~  515 (626)
                          .+|+|+|.||+++++|.+|+.+|.++|+++|++.++|+++|.+|..+|+|++|+.+|.+++.+++.+.
T Consensus       161 ----~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~  228 (615)
T TIGR00990       161 ----VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRN  228 (615)
T ss_pred             ----HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence                37999999999999999999999999999999999999999999999999999999999988877553

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=2.8e-13  Score=141.58  Aligned_cols=113  Identities=27%  Similarity=0.456  Sum_probs=105.1

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +..++++||.+|..|+|+.|+.+|+.||.    +.|.+           ..+|.|++.||.++++|.+|+.+..+.++++
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~----l~p~n-----------hvlySnrsaa~a~~~~~~~al~da~k~~~l~   66 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIM----LSPTN-----------HVLYSNRSAAYASLGSYEKALKDATKTRRLN   66 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHc----cCCCc-----------cchhcchHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            45788999999999999999999999999    77766           5699999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (626)
Q Consensus       478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~  526 (626)
                      |.++|+|.|+|.++..+|+|++|+..|.+.|+.+|+| +.+...|..+.
T Consensus        67 p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n-~~L~~gl~~a~  114 (539)
T KOG0548|consen   67 PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSN-KQLKTGLAQAY  114 (539)
T ss_pred             CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCch-HHHHHhHHHhh
Confidence            9999999999999999999999999999999999998 66777776665

>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.46  E-value=7.6e-13  Score=125.05  Aligned_cols=82  Identities=23%  Similarity=0.302  Sum_probs=72.8

Q ss_pred             CCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCCCcEEEEEeeccccccCCCCCCCC
Q 006908           45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA  124 (626)
Q Consensus        45 p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge~~~~~ip~~~~~g~~~~~~~~  124 (626)
                      ++.+++|+|+|++++.+|++|++|+.     ..|+.|++|.++++|+|+++|.+|++|++++|+|||+.|||..      
T Consensus         3 I~~~~vV~l~Y~l~~~dG~v~dst~~-----~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~------   71 (196)
T PRK10737          3 VAKDLVVSLAYQVRTEDGVLVDESPV-----SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQY------   71 (196)
T ss_pred             cCCCCEEEEEEEEEeCCCCEEEecCC-----CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCC------
Confidence            67899999999999999999999974     5799999999999999999999999999999999999999986      


Q ss_pred             CCCCCCCceEEEEEEeeee
Q 006908          125 PSTFPKDEELHFEIEMIDF  143 (626)
Q Consensus       125 ~~~i~~~~~lv~~v~l~~~  143 (626)
                            +..++..|....+
T Consensus        72 ------d~~lV~~vpr~~F   84 (196)
T PRK10737         72 ------DENLVQRVPKDVF   84 (196)
T ss_pred             ------ChHHEEEecHHHC
Confidence                  3556666655544

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.45  E-value=2e-12  Score=118.60  Aligned_cols=114  Identities=17%  Similarity=0.271  Sum_probs=102.5

Q ss_pred             HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006908          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (626)
Q Consensus       400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~  479 (626)
                      .+...|..+++.|+|.+|+..|.+++.    +.|.+           ..+|+++|.++.++|+|.+|+..|.+++.++|+
T Consensus        26 ~~~~~g~~~~~~g~~~~A~~~~~~al~----~~P~~-----------~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~   90 (144)
T PRK15359         26 TVYASGYASWQEGDYSRAVIDFSWLVM----AQPWS-----------WRAHIALAGTWMMLKEYTTAINFYGHALMLDAS   90 (144)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCc-----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            355679999999999999999999999    77776           468999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 006908          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (626)
Q Consensus       480 ~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~  529 (626)
                      ++.+++++|.++..+|++++|+..|++|++++|++ ......+..+...+
T Consensus        91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~-~~~~~~~~~~~~~l  139 (144)
T PRK15359         91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYAD-ASWSEIRQNAQIMV  139 (144)
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999997 56666666655444

>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.44  E-value=5.4e-13  Score=122.93  Aligned_cols=84  Identities=17%  Similarity=0.233  Sum_probs=74.1

Q ss_pred             CCCCCCeEEEEEEEEeCCCcEEEecCC-CccEEEEcCCCCccchHHHhhccCCCCcEEEEEEeCCccCCCCCCCCCCCcc
Q 006908          168 TPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCE  246 (626)
Q Consensus       168 ~~~~g~~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~ip~~~  246 (626)
                      .++.|+.|++||++++.||++|+|+.. +.|+.|.+|.|++++||++||.+|++|+++.|.|||+.|||.       .+.
T Consensus         4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~-------~d~   76 (156)
T PRK15095          4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGV-------PSP   76 (156)
T ss_pred             ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCC-------CCh
Confidence            467899999999999999999999874 799999999999999999999999999999999999999994       445


Q ss_pred             eEEEEEEEeeEE
Q 006908          247 EVHFEVELVHLI  258 (626)
Q Consensus       247 ~l~~~v~l~~~~  258 (626)
                      .+++.+.+..|.
T Consensus        77 ~~v~~vp~~~f~   88 (156)
T PRK15095         77 DLIQYFSRRDFM   88 (156)
T ss_pred             HHEEEecHHHCC
Confidence            566666666663

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=5e-13  Score=126.35  Aligned_cols=121  Identities=26%  Similarity=0.375  Sum_probs=107.1

Q ss_pred             HHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006908          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (626)
Q Consensus       396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~  475 (626)
                      ..+.+++++||.+|..++|..|+.+|.+||.    ++|..           ++.|.|+|.||+++++|+.+..+|.+||+
T Consensus         8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~----~nP~~-----------~~Y~tnralchlk~~~~~~v~~dcrralq   72 (284)
T KOG4642|consen    8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAIC----INPTV-----------ASYYTNRALCHLKLKHWEPVEEDCRRALQ   72 (284)
T ss_pred             hHHHHHHhccccccchhhhchHHHHHHHHHh----cCCCc-----------chhhhhHHHHHHHhhhhhhhhhhHHHHHh
Confidence            4688999999999999999999999999999    66654           67899999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHHHHH
Q 006908          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV----DKSSEPDATAALSKLKKQRQE  531 (626)
Q Consensus       476 ~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l----~P~~~~~~~~~l~~l~~~~~~  531 (626)
                      ++|+.+|++|.+|++++....|++|+..+++|+.+    .+.+..++..+|..++.+.-.
T Consensus        73 l~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~  132 (284)
T KOG4642|consen   73 LDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWE  132 (284)
T ss_pred             cChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccc
Confidence            99999999999999999999999999999999776    233335688888877655443

>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.38  E-value=2.1e-12  Score=122.03  Aligned_cols=83  Identities=17%  Similarity=0.107  Sum_probs=73.7

Q ss_pred             CCCCCeEEEEEEEEeCCCcEEEecCCCccEEEEcCCCCccchHHHhhccCCCCcEEEEEEeCCccCCCCCCCCCCCcceE
Q 006908          169 PRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEV  248 (626)
Q Consensus       169 ~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~ip~~~~l  248 (626)
                      ++.++.|+++|++++.+|++|+++....|+.|.+|.++++|+|+++|.+|++|++++|.|||+.|||.       .+..+
T Consensus         3 I~~~~vV~l~Y~l~~~dG~v~dst~~~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe-------~d~~l   75 (196)
T PRK10737          3 VAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQ-------YDENL   75 (196)
T ss_pred             cCCCCEEEEEEEEEeCCCCEEEecCCCCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCC-------CChHH
Confidence            56789999999999999999999988899999999999999999999999999999999999999994       44556


Q ss_pred             EEEEEEeeEE
Q 006908          249 HFEVELVHLI  258 (626)
Q Consensus       249 ~~~v~l~~~~  258 (626)
                      +.+|.+..|.
T Consensus        76 V~~vpr~~F~   85 (196)
T PRK10737         76 VQRVPKDVFM   85 (196)
T ss_pred             EEEecHHHCC
Confidence            6666666553

>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=2.9e-12  Score=117.18  Aligned_cols=84  Identities=15%  Similarity=0.100  Sum_probs=73.1

Q ss_pred             CCCCCCeEEEEEEEEeCCCcEEEecCC-CccEEEEcCCCCccchHHHhhccCCCCcEEEEEEeCCccCCCCCCCCCCCcc
Q 006908          168 TPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCE  246 (626)
Q Consensus       168 ~~~~g~~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~ip~~~  246 (626)
                      ....|+.|++||+++..||++|+||.. ..|+.|.+|.|+++|||++||.+|.+|++.+|.|||+.|||.+       +.
T Consensus         2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~-------~~   74 (174)
T COG1047           2 KIEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEY-------DP   74 (174)
T ss_pred             cccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCC-------Ch
Confidence            356789999999999999999999977 8999999999999999999999999999999999999999954       34


Q ss_pred             eEEEEEEEeeEE
Q 006908          247 EVHFEVELVHLI  258 (626)
Q Consensus       247 ~l~~~v~l~~~~  258 (626)
                      .++-.+.+..|.
T Consensus        75 ~lvq~vp~~~F~   86 (174)
T COG1047          75 DLVQRVPRDEFQ   86 (174)
T ss_pred             HHeEEecHHHhC
Confidence            445555555553

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.29  E-value=6.7e-11  Score=107.27  Aligned_cols=102  Identities=9%  Similarity=0.091  Sum_probs=93.7

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~  476 (626)
                      ..+.+...|..++..|+++.|...|+-.+.    +.|.+           ...|+|||.|+..+|+|.+|+..|.+|+.+
T Consensus        34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~----~Dp~~-----------~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L   98 (157)
T PRK15363         34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTI----YDAWS-----------FDYWFRLGECCQAQKHWGEAIYAYGRAAQI   98 (157)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCccc-----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            345677889999999999999999999888    66665           568999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (626)
Q Consensus       477 dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~  513 (626)
                      +|+++.++++.|.|++.+|+.+.|++.|+.|+...-.
T Consensus        99 ~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~  135 (157)
T PRK15363         99 KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGE  135 (157)
T ss_pred             CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999998743

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.26  E-value=7.7e-12  Score=130.07  Aligned_cols=120  Identities=30%  Similarity=0.460  Sum_probs=110.9

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~  476 (626)
                      .|+.++.+||.+|+.+.|+.|+..|.+||+    +.|+.           +.++.|+|.+++|.++|..|+.++.+|+++
T Consensus         3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~----ldpnc-----------a~~~anRa~a~lK~e~~~~Al~Da~kaie~   67 (476)
T KOG0376|consen    3 SAEELKNEANEALKDKVFDVAVDLYSKAIE----LDPNC-----------AIYFANRALAHLKVESFGGALHDALKAIEL   67 (476)
T ss_pred             hhhhhhhHHhhhcccchHHHHHHHHHHHHh----cCCcc-----------eeeechhhhhheeechhhhHHHHHHhhhhc
Confidence            477889999999999999999999999999    66655           668899999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 006908          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEV  532 (626)
Q Consensus       477 dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~  532 (626)
                      +|...|||+|+|.+++.++++-+|+.+|++...+.|+. +.+.+.+..++....++
T Consensus        68 dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd-~~~~r~~~Ec~~~vs~~  122 (476)
T KOG0376|consen   68 DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPND-PDATRKIDECNKIVSEE  122 (476)
T ss_pred             CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCc-HHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999996 78888888887776643

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.26  E-value=1e-10  Score=105.74  Aligned_cols=113  Identities=19%  Similarity=0.374  Sum_probs=99.8

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +..+...|..+++.|+|.+|...|++++.    ..|.+           ..++.++|.|++++++|.+|+..+.+++.++
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~p~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   81 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAA----YDPYN-----------SRYWLGLAACCQMLKEYEEAIDAYALAAALD   81 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            45577899999999999999999999998    56655           4588999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (626)
Q Consensus       478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~  526 (626)
                      |.++..++++|.++..+|++++|+..|+++++++|++ .........+.
T Consensus        82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~  129 (135)
T TIGR02552        82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGEN-PEYSELKERAE  129 (135)
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-chHHHHHHHHH
Confidence            9999999999999999999999999999999999997 44444444443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.17  E-value=8.8e-11  Score=93.10  Aligned_cols=66  Identities=32%  Similarity=0.605  Sum_probs=63.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 006908          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG-EFEEAQRDFEMMMKVDK  512 (626)
Q Consensus       447 ~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg-~~~eA~~~~~kAl~l~P  512 (626)
                      +.+|.++|.+++.+++|.+|+.+|+++|+++|+++.+|+++|.++..+| ++++|+++|++|++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            4578999999999999999999999999999999999999999999999 79999999999999998

...

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.13  E-value=1.2e-10  Score=123.05  Aligned_cols=121  Identities=23%  Similarity=0.316  Sum_probs=91.7

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      |..+-+.|..|+.+|..+.|+..|++||.    +.|..+           .+|+|+|.++-..|+..+|..+|.+||.+.
T Consensus       286 A~a~gNla~iYyeqG~ldlAI~~Ykral~----~~P~F~-----------~Ay~NlanALkd~G~V~ea~~cYnkaL~l~  350 (966)
T KOG4626|consen  286 AVAHGNLACIYYEQGLLDLAIDTYKRALE----LQPNFP-----------DAYNNLANALKDKGSVTEAVDCYNKALRLC  350 (966)
T ss_pred             hhhccceEEEEeccccHHHHHHHHHHHHh----cCCCch-----------HHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence            44555666677777777777777777777    555543           378888888888888888888888888888


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 006908          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVES  534 (626)
Q Consensus       478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~  534 (626)
                      |+++.+++++|++++..|.+++|...|.+|++..|.. ..+..+|+.+.+.+....+
T Consensus       351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~-aaa~nNLa~i~kqqgnl~~  406 (966)
T KOG4626|consen  351 PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEF-AAAHNNLASIYKQQGNLDD  406 (966)
T ss_pred             CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhh-hhhhhhHHHHHHhcccHHH
Confidence            8888888888888888888888888888888888886 5677777777655554443

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.12  E-value=1.3e-09  Score=112.51  Aligned_cols=104  Identities=22%  Similarity=0.251  Sum_probs=98.1

Q ss_pred             HHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006908          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (626)
Q Consensus       396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~  475 (626)
                      ..+..+.++|..+...|++..|+..|++|+.    +.|.+           ..+|+++|.++..+|+|+.|+..+.++++
T Consensus        62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~----l~P~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~  126 (296)
T PRK11189         62 ERAQLHYERGVLYDSLGLRALARNDFSQALA----LRPDM-----------ADAYNYLGIYLTQAGNFDAAYEAFDSVLE  126 (296)
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----cCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3467788999999999999999999999999    77776           45899999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       476 ~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      ++|++..+++++|.++...|++++|+++|+++++++|++
T Consensus       127 l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~  165 (296)
T PRK11189        127 LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPND  165 (296)
T ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999999999999999997

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.12  E-value=1.3e-09  Score=105.45  Aligned_cols=103  Identities=15%  Similarity=0.250  Sum_probs=94.4

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHH-HHcCC--HHHHHHHHHHHH
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACL-LKLGE--CRKSIEACNKVL  474 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~-~kl~~--~~~A~~~~~~aL  474 (626)
                      +..+...|..+...|+|+.|+..|.+|+.    +.|++           ..+++++|.|+ +..|+  +.+|+..+.+++
T Consensus        73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~----l~P~~-----------~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al  137 (198)
T PRK10370         73 SEQWALLGEYYLWRNDYDNALLAYRQALQ----LRGEN-----------AELYAALATVLYYQAGQHMTPQTREMIDKAL  137 (198)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            55677899999999999999999999999    77777           45899999985 67787  599999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 006908          475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (626)
Q Consensus       475 ~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~  515 (626)
                      +++|+++.+++.+|.+++.+|+|++|+..|+++++++|.+.
T Consensus       138 ~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~  178 (198)
T PRK10370        138 ALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV  178 (198)
T ss_pred             HhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            99999999999999999999999999999999999999864

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.11  E-value=4.1e-10  Score=119.20  Aligned_cols=119  Identities=18%  Similarity=0.231  Sum_probs=72.2

Q ss_pred             HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006908          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (626)
Q Consensus       399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp  478 (626)
                      ..+.+.||.+-..|+..+|..+|.+||.    +.|..           +...+|||.+|..++.+++|...|.++|+..|
T Consensus       321 ~Ay~NlanALkd~G~V~ea~~cYnkaL~----l~p~h-----------adam~NLgni~~E~~~~e~A~~ly~~al~v~p  385 (966)
T KOG4626|consen  321 DAYNNLANALKDKGSVTEAVDCYNKALR----LCPNH-----------ADAMNNLGNIYREQGKIEEATRLYLKALEVFP  385 (966)
T ss_pred             HHHhHHHHHHHhccchHHHHHHHHHHHH----hCCcc-----------HHHHHHHHHHHHHhccchHHHHHHHHHHhhCh
Confidence            3555666666666666666666666666    33322           33556666666666666666666666666666


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 006908          479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVE  533 (626)
Q Consensus       479 ~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~  533 (626)
                      ..+.|+.++|..|...|++++|+..|+.||.+.|.. .++..++....+.+....
T Consensus       386 ~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~f-Ada~~NmGnt~ke~g~v~  439 (966)
T KOG4626|consen  386 EFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTF-ADALSNMGNTYKEMGDVS  439 (966)
T ss_pred             hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchH-HHHHHhcchHHHHhhhHH
Confidence            666666666666666666666666666666666664 455555555554444433

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.02  E-value=4.4e-09  Score=92.36  Aligned_cols=104  Identities=19%  Similarity=0.263  Sum_probs=91.9

Q ss_pred             HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006908          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (626)
Q Consensus       399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp  478 (626)
                      ..+...|..+++.|+|++|+..|.+++.    ..|.+.        ....+++++|.++++.++|..|+..+.+++..+|
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p   70 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLK----KYPKST--------YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP   70 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCcc--------ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC
Confidence            4567889999999999999999999998    344331        1235788999999999999999999999999998


Q ss_pred             CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          479 AH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       479 ~~---~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      ++   ..+++.+|.++..++++++|+..|+++++..|++
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  109 (119)
T TIGR02795        71 KSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGS  109 (119)
T ss_pred             CCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence            85   6789999999999999999999999999999997

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.01  E-value=2.6e-10  Score=113.69  Aligned_cols=120  Identities=28%  Similarity=0.458  Sum_probs=109.0

Q ss_pred             ChhhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHH
Q 006908          390 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEA  469 (626)
Q Consensus       390 ~~~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~  469 (626)
                      ..++.+++|...+-++.+++..|.++.|+..|..|+.    ++|..           +.+|.++|.++++++.+..|+.+
T Consensus       106 ~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~----lnp~~-----------a~l~~kr~sv~lkl~kp~~airD  170 (377)
T KOG1308|consen  106 ITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIE----LNPPL-----------AILYAKRASVFLKLKKPNAAIRD  170 (377)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccc----cCCch-----------hhhcccccceeeeccCCchhhhh
Confidence            4578899999999999999999999999999999999    77765           67899999999999999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908          470 CNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (626)
Q Consensus       470 ~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~  526 (626)
                      |..|++++|+.++.|-.+|.|+..+|+|++|..+|..|++++-+  .++...|..+.
T Consensus       171 ~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d--E~~~a~lKeV~  225 (377)
T KOG1308|consen  171 CDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD--EANSATLKEVF  225 (377)
T ss_pred             hhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc--HHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999865  34555555554

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.00  E-value=6.9e-09  Score=98.25  Aligned_cols=112  Identities=21%  Similarity=0.319  Sum_probs=96.1

Q ss_pred             hhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHH
Q 006908          392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN  471 (626)
Q Consensus       392 ~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~  471 (626)
                      ......+..+...|..++..|+|++|+.+|++++..    .+...+        ...++.++|.++.++|+|++|+..+.
T Consensus        29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~   96 (172)
T PRK02603         29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKL----EEDPND--------RSYILYNMGIIYASNGEHDKALEYYH   96 (172)
T ss_pred             ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----hhccch--------HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            345567888999999999999999999999999983    332211        24589999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhcCCCCH
Q 006908          472 KVLDANPAHVKGLYRRGMAYMALGE--------------FEEAQRDFEMMMKVDKSSE  515 (626)
Q Consensus       472 ~aL~~dp~~~ka~~~~g~a~~~lg~--------------~~eA~~~~~kAl~l~P~~~  515 (626)
                      +++.++|.+..+++.+|.++..+++              +++|++.+++++.++|++.
T Consensus        97 ~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~  154 (172)
T PRK02603         97 QALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY  154 (172)
T ss_pred             HHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence            9999999999999999999999988              6778888888888888863

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.00  E-value=6.3e-09  Score=118.70  Aligned_cols=115  Identities=23%  Similarity=0.271  Sum_probs=85.1

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~  476 (626)
                      .+..+...|..++..|++++|+..|++++.    +.|..           ...|+++|.++..+|+|++|+.++.+++++
T Consensus       330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~----l~P~~-----------~~~~~~la~~~~~~g~~~eA~~~~~~al~~  394 (615)
T TIGR00990       330 EAIALNLRGTFKCLKGKHLEALADLSKSIE----LDPRV-----------TQSYIKRASMNLELGDPDKAEEDFDKALKL  394 (615)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCc-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            445677788899999999999999999998    56654           346677777777777777777777777777


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006908          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (626)
Q Consensus       477 dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~  527 (626)
                      +|+++.+|+++|.+++.+|++++|+.+|+++++++|++ ..+...+..+..
T Consensus       395 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~-~~~~~~la~~~~  444 (615)
T TIGR00990       395 NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF-IFSHIQLGVTQY  444 (615)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC-HHHHHHHHHHHH
Confidence            77777777777777777777777777777777777776 344444444443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.93  E-value=2.2e-09  Score=88.67  Aligned_cols=83  Identities=29%  Similarity=0.491  Sum_probs=71.2

Q ss_pred             cccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006908          411 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA  490 (626)
Q Consensus       411 ~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a  490 (626)
                      +|+|+.|+..|.+++..    .|.+.         ...+++++|.||+++|+|.+|+..+++ +..++.++.+++.+|+|
T Consensus         2 ~~~y~~Ai~~~~k~~~~----~~~~~---------~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~   67 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLEL----DPTNP---------NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARC   67 (84)
T ss_dssp             TT-HHHHHHHHHHHHHH----HCGTH---------HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHH----CCCCh---------hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHH
Confidence            68999999999999993    33221         234788899999999999999999999 88999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHH
Q 006908          491 YMALGEFEEAQRDFEMM  507 (626)
Q Consensus       491 ~~~lg~~~eA~~~~~kA  507 (626)
                      +..+|+|++|+..|++|
T Consensus        68 ~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   68 LLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHTT-HHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHhcC
Confidence            99999999999999876

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.92  E-value=2.8e-08  Score=93.65  Aligned_cols=115  Identities=19%  Similarity=0.189  Sum_probs=93.8

Q ss_pred             HHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006908          394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV  473 (626)
Q Consensus       394 ~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~a  473 (626)
                      ....+..+...|..++..|+|++|+..|.+|+..    .+...        ....+++|+|.++.++|++.+|+..|.++
T Consensus        31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l----~~~~~--------~~~~~~~~lg~~~~~~g~~~eA~~~~~~A   98 (168)
T CHL00033         31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRL----EIDPY--------DRSYILYNIGLIHTSNGEHTKALEYYFQA   98 (168)
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----cccch--------hhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3457888899999999999999999999999983    33211        12458999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHhcCCCCHHHHHH
Q 006908          474 LDANPAHVKGLYRRGMAYM-------ALGEFE-------EAQRDFEMMMKVDKSSEPDATA  520 (626)
Q Consensus       474 L~~dp~~~ka~~~~g~a~~-------~lg~~~-------eA~~~~~kAl~l~P~~~~~~~~  520 (626)
                      +.++|.+..+++++|.++.       .+|+++       +|+..|++++.++|.+...+..
T Consensus        99 l~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~  159 (168)
T CHL00033         99 LERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQN  159 (168)
T ss_pred             HHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHH
Confidence            9999999999999999999       777876       5556666777888876544433

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.91  E-value=1.2e-08  Score=101.58  Aligned_cols=105  Identities=22%  Similarity=0.437  Sum_probs=98.3

Q ss_pred             HHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006908          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (626)
Q Consensus       396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~  475 (626)
                      ..+++..+.|+.++.+|+|..|+..|..|+.    .+|.+           ..+++.+|.+|+-+|+-..|+.+++++|+
T Consensus        36 advekhlElGk~lla~~Q~sDALt~yHaAve----~dp~~-----------Y~aifrRaT~yLAmGksk~al~Dl~rVle  100 (504)
T KOG0624|consen   36 ADVEKHLELGKELLARGQLSDALTHYHAAVE----GDPNN-----------YQAIFRRATVYLAMGKSKAALQDLSRVLE  100 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc----CCchh-----------HHHHHHHHHHHhhhcCCccchhhHHHHHh
Confidence            4577888999999999999999999999999    77765           56889999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 006908          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (626)
Q Consensus       476 ~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~  515 (626)
                      +.|+..-|...||.+++++|++++|.++|+++|..+|++.
T Consensus       101 lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~  140 (504)
T KOG0624|consen  101 LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNG  140 (504)
T ss_pred             cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcc
Confidence            9999999999999999999999999999999999999763

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.90  E-value=5.6e-08  Score=84.00  Aligned_cols=124  Identities=19%  Similarity=0.286  Sum_probs=103.2

Q ss_pred             hhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHH
Q 006908          392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN  471 (626)
Q Consensus       392 ~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~  471 (626)
                      ..-++....+-.+|..+...|+.+.|++.|.+||.    +.|..           +++|+|+|.++.-+++.++|+.+.+
T Consensus        37 ~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~----l~P~r-----------aSayNNRAQa~RLq~~~e~ALdDLn  101 (175)
T KOG4555|consen   37 TQAIKASRELELKAIALAEAGDLDGALELFGQALC----LAPER-----------ASAYNNRAQALRLQGDDEEALDDLN  101 (175)
T ss_pred             hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH----hcccc-----------hHhhccHHHHHHHcCChHHHHHHHH
Confidence            45577788888899999999999999999999999    44443           6799999999999999999999999


Q ss_pred             HHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 006908          472 KVLDANPAH----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVE  533 (626)
Q Consensus       472 ~aL~~dp~~----~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~  533 (626)
                      +||++....    ..+|..||..|..+|+.+.|+.+|..|.++....   ++..|-.+.--..-.+
T Consensus       102 ~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~F---Ar~QLV~lNPYAAlCN  164 (175)
T KOG4555|consen  102 KALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKF---AREQLVELNPYAALCN  164 (175)
T ss_pred             HHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHH---HHHHHHhcChHHHHHH
Confidence            999996433    4589999999999999999999999999997553   5666655543333333

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.90  E-value=4.9e-09  Score=81.95  Aligned_cols=64  Identities=22%  Similarity=0.416  Sum_probs=60.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          451 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       451 ~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      +++|..+++.|+|++|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+|
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            3589999999999999999999999999999999999999999999999999999999999986

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.89  E-value=2.9e-08  Score=116.85  Aligned_cols=116  Identities=11%  Similarity=0.101  Sum_probs=96.2

Q ss_pred             HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006908          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (626)
Q Consensus       399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp  478 (626)
                      ..+...|..+.+.|++++|+..|.+++.    +.|++           ..+++|+|.++..+|++++|+..+.++++++|
T Consensus       610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~----l~Pd~-----------~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P  674 (987)
T PRK09782        610 NAYVARATIYRQRHNVPAAVSDLRAALE----LEPNN-----------SNYQAALGYALWDSGDIAQSREMLERAHKGLP  674 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            3455677778888888888888888888    66766           45889999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006908          479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (626)
Q Consensus       479 ~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~  530 (626)
                      +++.+++++|.++..+|++++|+..|++|++++|++ ..+......+.....
T Consensus       675 ~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~-a~i~~~~g~~~~~~~  725 (987)
T PRK09782        675 DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ-ALITPLTPEQNQQRF  725 (987)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-chhhhhhhHHHHHHH
Confidence            999999999999999999999999999999999987 456655555544433

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.87  E-value=2e-08  Score=82.65  Aligned_cols=98  Identities=33%  Similarity=0.587  Sum_probs=88.2

Q ss_pred             HHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 006908          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (626)
Q Consensus       401 ~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~  480 (626)
                      +...|..++..|++.+|+..|.+++.    ..|.+           ..++.++|.|+...+++.+|+..+.+++.+.|.+
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   67 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALE----LDPDN-----------ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN   67 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHh----cCCcc-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            56788889999999999999999998    44443           2478899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908          481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (626)
Q Consensus       481 ~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~  513 (626)
                      ..+++.+|.++...|++++|...+.++++++|.
T Consensus        68 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          68 AKAYYNLGLAYYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             hhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence            999999999999999999999999999998874

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.85  E-value=5.3e-09  Score=112.55  Aligned_cols=102  Identities=18%  Similarity=0.287  Sum_probs=61.3

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      .+.+...||.+--+++++.|+++|++|+.    ++|..           +-+|.-+|.=+....+|+.|..+|..||.++
T Consensus       421 PesWca~GNcfSLQkdh~~Aik~f~RAiQ----ldp~f-----------aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~  485 (638)
T KOG1126|consen  421 PESWCALGNCFSLQKDHDTAIKCFKRAIQ----LDPRF-----------AYAYTLLGHESIATEEFDKAMKSFRKALGVD  485 (638)
T ss_pred             cHHHHHhcchhhhhhHHHHHHHHHHHhhc----cCCcc-----------chhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence            66888999999999999999999999999    66643           2233334444444444444444444444444


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      |.+..|||-+|.+|+++++++.|.-.|++|++++|.|
T Consensus       486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~n  522 (638)
T KOG1126|consen  486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSN  522 (638)
T ss_pred             chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccc
Confidence            4444444444444444444444444444444444444

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.84  E-value=2.9e-08  Score=90.98  Aligned_cols=99  Identities=15%  Similarity=0.166  Sum_probs=84.8

Q ss_pred             HHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 006908          418 KAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF  497 (626)
Q Consensus       418 ~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~  497 (626)
                      ..+|++|++    +.|.              .+.++|.++..+|+|.+|+..|.+++.++|.+..+|+.+|.++..+|++
T Consensus        13 ~~~~~~al~----~~p~--------------~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~   74 (144)
T PRK15359         13 EDILKQLLS----VDPE--------------TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEY   74 (144)
T ss_pred             HHHHHHHHH----cCHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhH
Confidence            456778887    4443              2567899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006908          498 EEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESK  535 (626)
Q Consensus       498 ~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~  535 (626)
                      ++|+..|++|++++|++ ..+...+..+.....+..+.
T Consensus        75 ~~A~~~y~~Al~l~p~~-~~a~~~lg~~l~~~g~~~eA  111 (144)
T PRK15359         75 TTAINFYGHALMLDASH-PEPVYQTGVCLKMMGEPGLA  111 (144)
T ss_pred             HHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHcCCHHHH
Confidence            99999999999999997 67888888776655544443

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.84  E-value=2.2e-08  Score=105.78  Aligned_cols=117  Identities=16%  Similarity=0.162  Sum_probs=100.8

Q ss_pred             HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006908          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (626)
Q Consensus       400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~  479 (626)
                      .+++.|..+|..+.|.+|+.+|+.++.......+...        .....++|+|.++.|++.|.+|+..++++|.+.|.
T Consensus       416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~--------~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k  487 (611)
T KOG1173|consen  416 VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI--------FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK  487 (611)
T ss_pred             hhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc--------chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence            4668899999999999999999999965444433221        23567999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006908          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (626)
Q Consensus       480 ~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l  525 (626)
                      ++.+|--.|.+|..+|+++.|+..|.+||.++|+| .-+...|..+
T Consensus       488 ~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n-~~~~~lL~~a  532 (611)
T KOG1173|consen  488 DASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN-IFISELLKLA  532 (611)
T ss_pred             chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc-HHHHHHHHHH
Confidence            99999999999999999999999999999999998 5566666644

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.84  E-value=1.4e-08  Score=101.08  Aligned_cols=131  Identities=21%  Similarity=0.356  Sum_probs=109.6

Q ss_pred             CChhhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHH
Q 006908          389 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIE  468 (626)
Q Consensus       389 ~~~~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~  468 (626)
                      .++-.++....+..+.+......++|.+++..+++.++    ..|..       ...+...+--++.|+..-+++.+|++
T Consensus       260 f~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk----~ep~~-------~~ir~~~~r~~c~C~~~d~~~~eAiq  328 (504)
T KOG0624|consen  260 FPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK----NEPEE-------TMIRYNGFRVLCTCYREDEQFGEAIQ  328 (504)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh----cCCcc-------cceeeeeeheeeecccccCCHHHHHH
Confidence            35566777788888888899999999999999999998    44432       11223344557899999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 006908          469 ACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQE  531 (626)
Q Consensus       469 ~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~  531 (626)
                      .|+++|.++|+++.+|..||.||+.-..|++|+.+|++|++++++| ..++.-+...++..++
T Consensus       329 qC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn-~~~reGle~Akrlkkq  390 (504)
T KOG0624|consen  329 QCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN-TRAREGLERAKRLKKQ  390 (504)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998 5788888777665544

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.82  E-value=1.3e-07  Score=91.60  Aligned_cols=123  Identities=11%  Similarity=0.105  Sum_probs=104.3

Q ss_pred             ccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006908          410 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGM  489 (626)
Q Consensus       410 ~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~  489 (626)
                      ..++.++++..|++++.    .+|.+           ...|.++|.+|..+++++.|+..|.++++++|+++.+++.+|.
T Consensus        51 ~~~~~~~~i~~l~~~L~----~~P~~-----------~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~  115 (198)
T PRK10370         51 SQQTPEAQLQALQDKIR----ANPQN-----------SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALAT  115 (198)
T ss_pred             CchhHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            46788999999999999    77877           4589999999999999999999999999999999999999999


Q ss_pred             HH-HHcCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCC
Q 006908          490 AY-MALGE--FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPG  549 (626)
Q Consensus       490 a~-~~lg~--~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~  549 (626)
                      ++ ...|+  +++|++.|++|++++|++ ..+...|........+..+.. ..++++....+.
T Consensus       116 aL~~~~g~~~~~~A~~~l~~al~~dP~~-~~al~~LA~~~~~~g~~~~Ai-~~~~~aL~l~~~  176 (198)
T PRK10370        116 VLYYQAGQHMTPQTREMIDKALALDANE-VTALMLLASDAFMQADYAQAI-ELWQKVLDLNSP  176 (198)
T ss_pred             HHHHhcCCCCcHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCC
Confidence            86 67787  599999999999999998 678888888877666665554 355666555444

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.82  E-value=8.5e-09  Score=81.58  Aligned_cols=67  Identities=28%  Similarity=0.496  Sum_probs=61.4

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-ECRKSIEACNKVLD  475 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~-~~~~A~~~~~~aL~  475 (626)
                      .|..+...|..++..|+|++|+..|++|+.    +.|.+           ..+|+|+|.||.+++ +|.+|+.++.++|+
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~----~~p~~-----------~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE----LDPNN-----------AEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH----HSTTH-----------HHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCC-----------HHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            367889999999999999999999999999    56654           569999999999999 79999999999999


Q ss_pred             hCC
Q 006908          476 ANP  478 (626)
Q Consensus       476 ~dp  478 (626)
                      ++|
T Consensus        67 l~P   69 (69)
T PF13414_consen   67 LDP   69 (69)
T ss_dssp             HST
T ss_pred             cCc
Confidence            998

...

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.81  E-value=4e-08  Score=102.13  Aligned_cols=114  Identities=25%  Similarity=0.311  Sum_probs=101.7

Q ss_pred             HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (626)
Q Consensus       395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL  474 (626)
                      -..|..+.-.|..+|-.|++..|...+.++|.    +.|.+           .++|..||..|...++-.+-..++.+|.
T Consensus       323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~----l~~~~-----------~~lyI~~a~~y~d~~~~~~~~~~F~~A~  387 (606)
T KOG0547|consen  323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK----LDPAF-----------NSLYIKRAAAYADENQSEKMWKDFNKAE  387 (606)
T ss_pred             HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh----cCccc-----------chHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence            34688899999999999999999999999999    66654           4569999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908          475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (626)
Q Consensus       475 ~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~  526 (626)
                      .+||.|+..||.||+.++-+++|++|+++|++|+.|+|+|   +...++.+-
T Consensus       388 ~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~---~~~~iQl~~  436 (606)
T KOG0547|consen  388 DLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPEN---AYAYIQLCC  436 (606)
T ss_pred             hcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhh---hHHHHHHHH
Confidence            9999999999999999999999999999999999999997   344444443

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=4.9e-08  Score=100.93  Aligned_cols=119  Identities=17%  Similarity=0.229  Sum_probs=103.4

Q ss_pred             hhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 006908          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK  482 (626)
Q Consensus       403 ~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~k  482 (626)
                      -.||-+--++++++|+.+|++||.    ++|..           ..+|.-+|.=|..|++-..|+..|.+|+.++|.+.+
T Consensus       335 iIaNYYSlr~eHEKAv~YFkRALk----LNp~~-----------~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR  399 (559)
T KOG1155|consen  335 IIANYYSLRSEHEKAVMYFKRALK----LNPKY-----------LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR  399 (559)
T ss_pred             eehhHHHHHHhHHHHHHHHHHHHh----cCcch-----------hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH
Confidence            368888889999999999999999    77765           568888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 006908          483 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKAR  537 (626)
Q Consensus       483 a~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~~~  537 (626)
                      |||-+|++|.-++...=|+-+|++|+++-|++ +.++..|..+..++....++.+
T Consensus       400 AWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnD-sRlw~aLG~CY~kl~~~~eAiK  453 (559)
T KOG1155|consen  400 AWYGLGQAYEIMKMHFYALYYFQKALELKPND-SRLWVALGECYEKLNRLEEAIK  453 (559)
T ss_pred             HHhhhhHHHHHhcchHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHhccHHHHHH
Confidence            99999999999999999999999999999986 7788888888877776655554

>PRK15331 chaperone protein SicA; Provisional

Probab=98.79  E-value=7.8e-08  Score=87.81  Aligned_cols=101  Identities=9%  Similarity=0.157  Sum_probs=89.7

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      .+.+...|-.+|.+|+|++|...|+-...    ..+.+           ...++.||.|+..+++|.+|+..|..+..++
T Consensus        37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~----~d~~n-----------~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~  101 (165)
T PRK15331         37 MDGLYAHAYEFYNQGRLDEAETFFRFLCI----YDFYN-----------PDYTMGLAAVCQLKKQFQKACDLYAVAFTLL  101 (165)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCcCc-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            45667789999999999999999987666    45555           3478999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      ++++...|+.|+|++.+|+.+.|+..|..|+. .|.+
T Consensus       102 ~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~  137 (165)
T PRK15331        102 KNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTED  137 (165)
T ss_pred             cCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence            99999999999999999999999999999998 4553

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.79  E-value=9.3e-09  Score=109.04  Aligned_cols=96  Identities=27%  Similarity=0.415  Sum_probs=90.8

Q ss_pred             hhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 006908          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK  482 (626)
Q Consensus       403 ~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~k  482 (626)
                      -.|..++-.|+|++|+.+|+.||.    ..|.|           ..+|+.||+.+..-.+..+|+..|.+||++.|..+.
T Consensus       435 ~LGVLy~ls~efdraiDcf~~AL~----v~Pnd-----------~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR  499 (579)
T KOG1125|consen  435 GLGVLYNLSGEFDRAVDCFEAALQ----VKPND-----------YLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVR  499 (579)
T ss_pred             hhHHHHhcchHHHHHHHHHHHHHh----cCCch-----------HHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeee
Confidence            478888999999999999999999    78887           579999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908          483 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (626)
Q Consensus       483 a~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~  513 (626)
                      +.|++|.+++.+|.|.+|+..|-.||.+.+.
T Consensus       500 ~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  500 VRYNLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             eehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            9999999999999999999999999999765

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.79  E-value=7e-08  Score=109.52  Aligned_cols=116  Identities=7%  Similarity=0.048  Sum_probs=96.6

Q ss_pred             HHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006908          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (626)
Q Consensus       396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~  475 (626)
                      ..+..++..|......|.|++|...+..++.    +.|++           ..++.|+|.++.+++++++|+..|.++|.
T Consensus        84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~----~~Pd~-----------~~a~~~~a~~L~~~~~~eeA~~~~~~~l~  148 (694)
T PRK15179         84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ----RFPDS-----------SEAFILMLRGVKRQQGIEAGRAEIELYFS  148 (694)
T ss_pred             ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh----hCCCc-----------HHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence            3467778888888899999999999999998    67776           56888899999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006908          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (626)
Q Consensus       476 ~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~  527 (626)
                      .+|+++.+++.+|.++.++|+|++|++.|++++..+|++ +.++-.+..+-+
T Consensus       149 ~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~-~~~~~~~a~~l~  199 (694)
T PRK15179        149 GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEF-ENGYVGWAQSLT  199 (694)
T ss_pred             cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCc-HHHHHHHHHHHH
Confidence            999999999999999999999999999999999888875 455555555444

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.79  E-value=1.3e-07  Score=94.26  Aligned_cols=114  Identities=20%  Similarity=0.288  Sum_probs=97.2

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~  476 (626)
                      .+..+...|..+++.|+|..|+..|++++.    ..|.++        ....+++++|.+++++++|.+|+..+.++++.
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~----~~p~~~--------~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~   99 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALES----RYPFSP--------YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL   99 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCch--------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            466778899999999999999999999998    555542        12347899999999999999999999999999


Q ss_pred             CCCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 006908          477 NPAHVK---GLYRRGMAYMAL--------GEFEEAQRDFEMMMKVDKSSEPDATAALS  523 (626)
Q Consensus       477 dp~~~k---a~~~~g~a~~~l--------g~~~eA~~~~~kAl~l~P~~~~~~~~~l~  523 (626)
                      .|++..   ++|.+|.++..+        +++++|+..|++++..+|++ ..+...+.
T Consensus       100 ~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~a~~  156 (235)
T TIGR03302       100 HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS-EYAPDAKK  156 (235)
T ss_pred             CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC-hhHHHHHH
Confidence            998876   799999999987        88999999999999999997 34443333

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK12370 invasion protein regulator; Provisional

Probab=98.78  E-value=8.8e-08  Score=107.70  Aligned_cols=91  Identities=15%  Similarity=0.059  Sum_probs=78.0

Q ss_pred             hccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 006908          409 FKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRG  488 (626)
Q Consensus       409 f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g  488 (626)
                      ...+++.+|+..+++|+.    +.|.+           ..+|.++|.++..+|++++|+..|.+|++++|+++.+|+.+|
T Consensus       315 ~~~~~~~~A~~~~~~Al~----ldP~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg  379 (553)
T PRK12370        315 DKQNAMIKAKEHAIKATE----LDHNN-----------PQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYG  379 (553)
T ss_pred             ccchHHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            366778899999999988    67776           347788888888889999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          489 MAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       489 ~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      .++..+|++++|+..|++|++++|.+
T Consensus       380 ~~l~~~G~~~eAi~~~~~Al~l~P~~  405 (553)
T PRK12370        380 WNLFMAGQLEEALQTINECLKLDPTR  405 (553)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence            99999999999999999999998886

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.76  E-value=1.3e-07  Score=91.90  Aligned_cols=121  Identities=18%  Similarity=0.224  Sum_probs=107.7

Q ss_pred             HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006908          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (626)
Q Consensus       399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp  478 (626)
                      ..+..+|..+|+.|+|..|+..+++|..    +.|.+           ..+|+-+|.||.++|+++.|...|.+++++.|
T Consensus       101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~----l~p~d-----------~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~  165 (257)
T COG5010         101 ELLAAQGKNQIRNGNFGEAVSVLRKAAR----LAPTD-----------WEAWNLLGAALDQLGRFDEARRAYRQALELAP  165 (257)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHhc----cCCCC-----------hhhhhHHHHHHHHccChhHHHHHHHHHHHhcc
Confidence            3445599999999999999999999999    78887           45899999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006908          479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESK  535 (626)
Q Consensus       479 ~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~  535 (626)
                      +++..+-|+|..++-.|+++.|...+..+...-+.+ ..+..+|..+..........
T Consensus       166 ~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad-~~v~~NLAl~~~~~g~~~~A  221 (257)
T COG5010         166 NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD-SRVRQNLALVVGLQGDFREA  221 (257)
T ss_pred             CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHhhcCChHHH
Confidence            999999999999999999999999999999887766 67889998887665544433

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.76  E-value=1.3e-07  Score=90.09  Aligned_cols=117  Identities=16%  Similarity=0.215  Sum_probs=78.0

Q ss_pred             HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHH--------------------H---HHhhhhhHHHH
Q 006908          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG--------------------K---VFVGKRNLLHL  451 (626)
Q Consensus       395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~--------------------~---~~~~~~~~~~~  451 (626)
                      -..+....+.|-.++.+|++..|....++||+    ..|.+..-+                    .   .+.+-...+++
T Consensus        32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~----~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLN  107 (250)
T COG3063          32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALE----HDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLN  107 (250)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhh
Confidence            34567777888889999999999999999888    556542100                    0   01112234556


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 006908          452 NVAACLLKLGECRKSIEACNKVLDAN--PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (626)
Q Consensus       452 Nla~~~~kl~~~~~A~~~~~~aL~~d--p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~  515 (626)
                      |-|.-++.+|+|++|...+.+|+..-  +.-+.+|-|+|.|.++.|+++.|..+|+++|+++|++.
T Consensus       108 NYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~  173 (250)
T COG3063         108 NYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP  173 (250)
T ss_pred             hhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC
Confidence            66666666666666666666665421  33466777788888888888888888888888888773

>PRK12370 invasion protein regulator; Provisional

Probab=98.75  E-value=1.2e-07  Score=106.49  Aligned_cols=113  Identities=10%  Similarity=0.097  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 006908          414 FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA  493 (626)
Q Consensus       414 ~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~  493 (626)
                      +++|+..|++|+.    ++|.+           ..+|+++|.++..+|++++|+..+.++++++|.++.+++.++.+++.
T Consensus       354 ~~~A~~~~~~Al~----l~P~~-----------~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~  418 (553)
T PRK12370        354 YIVGSLLFKQANL----LSPIS-----------ADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYY  418 (553)
T ss_pred             HHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh
Confidence            5778889999988    67776           45899999999999999999999999999999999888888888999


Q ss_pred             cCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 006908          494 LGEFEEAQRDFEMMMKVD-KSSEPDATAALSKLKKQRQEVESKARKQFKGL  543 (626)
Q Consensus       494 lg~~~eA~~~~~kAl~l~-P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  543 (626)
                      +|++++|+..+++++..+ |++ +.+...+..+.....+..+... .+.++
T Consensus       419 ~g~~eeA~~~~~~~l~~~~p~~-~~~~~~la~~l~~~G~~~eA~~-~~~~~  467 (553)
T PRK12370        419 HTGIDDAIRLGDELRSQHLQDN-PILLSMQVMFLSLKGKHELARK-LTKEI  467 (553)
T ss_pred             ccCHHHHHHHHHHHHHhccccC-HHHHHHHHHHHHhCCCHHHHHH-HHHHh
Confidence            999999999999999886 554 6677777777655554444433 34443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.74  E-value=2.8e-07  Score=90.12  Aligned_cols=116  Identities=19%  Similarity=0.296  Sum_probs=89.2

Q ss_pred             HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006908          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (626)
Q Consensus       400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~  479 (626)
                      .+...|..++..|+|++|+..|.+++....  .+           .....+.++|.|+..+|++.+|+..+.+++..+|.
T Consensus       101 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  167 (234)
T TIGR02521       101 VLNNYGTFLCQQGKYEQAMQQFEQAIEDPL--YP-----------QPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ  167 (234)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhccc--cc-----------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            344566777777778888877777776211  01           12346888999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 006908          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (626)
Q Consensus       480 ~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~  529 (626)
                      +..+++.+|.++...|++++|+..+++++.+.|.+ ......+..+....
T Consensus       168 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  216 (234)
T TIGR02521       168 RPESLLELAELYYLRGQYKDARAYLERYQQTYNQT-AESLWLGIRIARAL  216 (234)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHH
Confidence            99999999999999999999999999999997775 44444444444433

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.72  E-value=2.2e-07  Score=95.92  Aligned_cols=109  Identities=17%  Similarity=0.180  Sum_probs=90.2

Q ss_pred             ccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006908          412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAY  491 (626)
Q Consensus       412 g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~  491 (626)
                      +..+.++..+.++|..    .+.+++       ..+..|+++|.+|..+|++..|+.++.++++++|+++.+|+.+|.++
T Consensus        40 ~~~e~~i~~~~~~l~~----~~~~~~-------~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~  108 (296)
T PRK11189         40 LQQEVILARLNQILAS----RDLTDE-------ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYL  108 (296)
T ss_pred             hHHHHHHHHHHHHHcc----ccCCcH-------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            4678899999998862    222221       23568999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 006908          492 MALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEV  532 (626)
Q Consensus       492 ~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~  532 (626)
                      ..+|++++|+..|++|++++|++ ..+...+..+.....+.
T Consensus       109 ~~~g~~~~A~~~~~~Al~l~P~~-~~a~~~lg~~l~~~g~~  148 (296)
T PRK11189        109 TQAGNFDAAYEAFDSVLELDPTY-NYAYLNRGIALYYGGRY  148 (296)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCH
Confidence            99999999999999999999998 56666666654433333

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.71  E-value=2e-07  Score=109.87  Aligned_cols=109  Identities=15%  Similarity=0.174  Sum_probs=91.4

Q ss_pred             ccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006908          410 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGM  489 (626)
Q Consensus       410 ~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~  489 (626)
                      ..|++++|+..|.+|+.    +.|.            ..++.|+|.++.++|++++|+..+.+++.++|+++.+++++|.
T Consensus       588 ~~Gr~~eAl~~~~~AL~----l~P~------------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~  651 (987)
T PRK09782        588 IPGQPELALNDLTRSLN----IAPS------------ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGY  651 (987)
T ss_pred             hCCCHHHHHHHHHHHHH----hCCC------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            33666666666666666    4442            3578999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006908          490 AYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESK  535 (626)
Q Consensus       490 a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~  535 (626)
                      ++..+|++++|+..|++|++++|++ ..+..++..+.....+....
T Consensus       652 aL~~~G~~eeAi~~l~~AL~l~P~~-~~a~~nLA~al~~lGd~~eA  696 (987)
T PRK09782        652 ALWDSGDIAQSREMLERAHKGLPDD-PALIRQLAYVNQRLDDMAAT  696 (987)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHH
Confidence            9999999999999999999999998 67888888776655544433

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.70  E-value=6.7e-08  Score=77.30  Aligned_cols=69  Identities=23%  Similarity=0.413  Sum_probs=62.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 006908          454 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS  523 (626)
Q Consensus       454 a~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~  523 (626)
                      ...|++.++|.+|+.++++++.++|.++.+++.+|.++..+|+|.+|+.+|+++++++|++ ..+.....
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~-~~~~~~~a   70 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD-PDARALRA   70 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc-HHHHHHHH
Confidence            5678999999999999999999999999999999999999999999999999999999987 44544433

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.69  E-value=5e-07  Score=88.25  Aligned_cols=99  Identities=26%  Similarity=0.369  Sum_probs=70.0

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~  476 (626)
                      .+..+...|..++..|+|++|+..|.+++.    ..|.+           ..++.++|.++..+|++.+|+..+.+++++
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~----~~p~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~   94 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALE----HDPDD-----------YLAYLALALYYQQLGELEKAEDSFRRALTL   94 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCccc-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            456666777788888888888888888877    34443           235666777777777777777777777777


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (626)
Q Consensus       477 dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l  510 (626)
                      +|.+..+++++|.++...|++++|+..|++++..
T Consensus        95 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  128 (234)
T TIGR02521        95 NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED  128 (234)
T ss_pred             CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            7777777777777777777777777777777664

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.66  E-value=2.6e-07  Score=83.33  Aligned_cols=101  Identities=16%  Similarity=0.172  Sum_probs=86.0

Q ss_pred             HHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 006908          419 AKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFE  498 (626)
Q Consensus       419 ~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~  498 (626)
                      ..|++++.    ..|.+           ...+.++|.++++.+++.+|+..+.+++.++|.+..+++++|.++..+|+++
T Consensus         4 ~~~~~~l~----~~p~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~   68 (135)
T TIGR02552         4 ATLKDLLG----LDSEQ-----------LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYE   68 (135)
T ss_pred             hhHHHHHc----CChhh-----------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence            35677777    56654           3467889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006908          499 EAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESK  535 (626)
Q Consensus       499 eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~  535 (626)
                      +|+..|+++++++|.+ ......+..+.....+..+.
T Consensus        69 ~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~g~~~~A  104 (135)
T TIGR02552        69 EAIDAYALAAALDPDD-PRPYFHAAECLLALGEPESA  104 (135)
T ss_pred             HHHHHHHHHHhcCCCC-hHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999997 67777777776655544433

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.64  E-value=4e-07  Score=104.31  Aligned_cols=106  Identities=18%  Similarity=0.177  Sum_probs=61.6

Q ss_pred             hhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCC
Q 006908          404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRK----SIEACNKVLDANPA  479 (626)
Q Consensus       404 ~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~----A~~~~~~aL~~dp~  479 (626)
                      .|..++..|++++|+..|.+++.    ..|.+           ..+++++|.++..+|++.+    |+..|.++++++|+
T Consensus       218 l~~~l~~~g~~~eA~~~~~~al~----~~p~~-----------~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~  282 (656)
T PRK15174        218 AVDTLCAVGKYQEAIQTGESALA----RGLDG-----------AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD  282 (656)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC
Confidence            35566777888888888888777    44444           2345555555555555553    45555555555555


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006908          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (626)
Q Consensus       480 ~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l  525 (626)
                      ++.+++.+|.++..+|++++|+..|++++.++|++ ..+...+..+
T Consensus       283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~-~~a~~~La~~  327 (656)
T PRK15174        283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDL-PYVRAMYARA  327 (656)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHH
Confidence            55555555555555555555555555555555554 3344444433

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.64  E-value=4.1e-07  Score=81.36  Aligned_cols=105  Identities=23%  Similarity=0.395  Sum_probs=89.2

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +..+...|...++.|+|..|+..|+....    ..|..        +....+.++++-+|++.++|..|+..+.+-|+++
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~----ryP~g--------~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh   77 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDT----RYPFG--------EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH   77 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHh----cCCCC--------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            34566788888999999999999998877    34432        2234678899999999999999999999999999


Q ss_pred             CCCHH---HHHHHHHHHHHcCC---------------HHHHHHHHHHHHhcCCCC
Q 006908          478 PAHVK---GLYRRGMAYMALGE---------------FEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       478 p~~~k---a~~~~g~a~~~lg~---------------~~eA~~~~~kAl~l~P~~  514 (626)
                      |.+++   |+|++|.+++.+..               ..+|..+|++.+..-|++
T Consensus        78 P~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S  132 (142)
T PF13512_consen   78 PTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS  132 (142)
T ss_pred             CCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence            98865   89999999999987               788999999999998886

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.63  E-value=5.6e-07  Score=102.25  Aligned_cols=119  Identities=12%  Similarity=0.089  Sum_probs=102.5

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~  476 (626)
                      .+......++.+++.+++++|+..+++++.    ..|++           ...++++|.|+.++|+|++|+..|.+++..
T Consensus       119 ~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~----~~p~~-----------~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~  183 (694)
T PRK15179        119 SSEAFILMLRGVKRQQGIEAGRAEIELYFS----GGSSS-----------AREILLEAKSWDEIGQSEQADACFERLSRQ  183 (694)
T ss_pred             cHHHHHHHHHHHHHhccHHHHHHHHHHHhh----cCCCC-----------HHHHHHHHHHHHHhcchHHHHHHHHHHHhc
Confidence            356777899999999999999999999999    77777           568999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006908          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (626)
Q Consensus       477 dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~  530 (626)
                      +|+++.+++.+|.++..+|+.++|...|++|+++..+-.+...+.+..+.....
T Consensus       184 ~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  237 (694)
T PRK15179        184 HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDLNADLA  237 (694)
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999865433343445555544433

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.62  E-value=6.8e-07  Score=89.99  Aligned_cols=110  Identities=11%  Similarity=0.154  Sum_probs=90.2

Q ss_pred             Hhhhchh-hccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 006908          402 RVTGNRL-FKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (626)
Q Consensus       402 k~~Gn~~-f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~  480 (626)
                      ...|..+ ++.|+|++|+..|++.+.    ..|.+.        ....+++.+|.+|+..++|.+|+..|.+++...|++
T Consensus       146 Y~~A~~l~~~~~~y~~Ai~af~~fl~----~yP~s~--------~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s  213 (263)
T PRK10803        146 YNAAIALVQDKSRQDDAIVAFQNFVK----KYPDST--------YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS  213 (263)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH----HCcCCc--------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence            4455554 567999999999999999    445431        223578899999999999999999999999998875


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 006908          481 ---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK  524 (626)
Q Consensus       481 ---~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~  524 (626)
                         +.|+|++|.++..+|++++|+..|+++++..|++ ..+.....+
T Consensus       214 ~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s-~~a~~A~~r  259 (263)
T PRK10803        214 PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT-DGAKQAQKR  259 (263)
T ss_pred             cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC-HHHHHHHHH
Confidence               7799999999999999999999999999999997 344433333

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=8.6e-07  Score=91.90  Aligned_cols=130  Identities=15%  Similarity=0.226  Sum_probs=111.1

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      ...+-..|.++...++-..|+..|++|++    ++|.|           ..+|+.+|++|--|+.+-=|+-++++|+++.
T Consensus       364 ~~aWTLmGHEyvEmKNt~AAi~sYRrAvd----i~p~D-----------yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k  428 (559)
T KOG1155|consen  364 LSAWTLMGHEYVEMKNTHAAIESYRRAVD----INPRD-----------YRAWYGLGQAYEIMKMHFYALYYFQKALELK  428 (559)
T ss_pred             hHHHHHhhHHHHHhcccHHHHHHHHHHHh----cCchh-----------HHHHhhhhHHHHHhcchHHHHHHHHHHHhcC
Confidence            34555789999999999999999999999    77776           5689999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 006908          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLF  544 (626)
Q Consensus       478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  544 (626)
                      |++...|--+|.||.++++.++|+++|++|+.....+ ..+...|+.+.+.++..+++. ..|.+..
T Consensus       429 PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte-~~~l~~LakLye~l~d~~eAa-~~yek~v  493 (559)
T KOG1155|consen  429 PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE-GSALVRLAKLYEELKDLNEAA-QYYEKYV  493 (559)
T ss_pred             CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc-hHHHHHHHHHHHHHHhHHHHH-HHHHHHH
Confidence            9999999999999999999999999999999997665 567777888887777665544 2444433

>TIGR00115 tig trigger factor

Probab=98.61  E-value=8.8e-08  Score=103.52  Aligned_cols=92  Identities=20%  Similarity=0.284  Sum_probs=78.8

Q ss_pred             CCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCCCcEEEEEeeccccccCCCCCCCC
Q 006908           45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA  124 (626)
Q Consensus        45 p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge~~~~~ip~~~~~g~~~~~~~~  124 (626)
                      ++.||.|.++|+++. +|..|+++.      ..++.|.+|.+.+++||+++|.||++|++++|.+++...|+..+.    
T Consensus       147 ~~~gD~V~v~~~~~~-dg~~~~~~~------~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~----  215 (408)
T TIGR00115       147 AEKGDRVTIDFEGFI-DGEAFEGGK------AENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL----  215 (408)
T ss_pred             cCCCCEEEEEEEEEE-CCEECcCCC------CCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC----
Confidence            688999999999975 898888653      468999999999999999999999999999999998888886655    


Q ss_pred             CCCCCCCceEEEEEEeeeeccccccccc
Q 006908          125 PSTFPKDEELHFEIEMIDFAKAKIIADD  152 (626)
Q Consensus       125 ~~~i~~~~~lv~~v~l~~~~~~~~v~~D  152 (626)
                           +|.++.|.|+|.++.....+.-|
T Consensus       216 -----~gk~~~f~v~i~~I~~~~~peld  238 (408)
T TIGR00115       216 -----AGKEATFKVTVKEVKEKELPELD  238 (408)
T ss_pred             -----CCCeEEEEEEEEEeccCCCCCCC
Confidence                 48999999999999765544433

Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.60  E-value=4e-07  Score=98.33  Aligned_cols=80  Identities=19%  Similarity=0.274  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 006908          450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (626)
Q Consensus       450 ~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~  529 (626)
                      .+-+|..+.++|+.++|+..+++|+.+||.|+-+.|.+|..+..+++|++|+..|++..++-|++ ..+...+.++.+++
T Consensus       526 ~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~e-s~v~~llgki~k~~  604 (638)
T KOG1126|consen  526 LCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQE-SSVFALLGKIYKRL  604 (638)
T ss_pred             HhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcch-HHHHHHHHHHHHHH
Confidence            33344445555555555555555555555555555555555555555555555555555555543 34444444444444


Q ss_pred             H
Q 006908          530 Q  530 (626)
Q Consensus       530 ~  530 (626)
                      .
T Consensus       605 ~  605 (638)
T KOG1126|consen  605 G  605 (638)
T ss_pred             c
Confidence            3

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=4.9e-07  Score=92.51  Aligned_cols=114  Identities=24%  Similarity=0.356  Sum_probs=96.9

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHH-hhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVF-VGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~-~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~  475 (626)
                      .+.+++-+|..++-..+.+.|+.+|+++|+    +.|+..+-.... ..-....+-+.|.-.++.|+|..|.+.|+.+|.
T Consensus       202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~----ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~  277 (486)
T KOG0550|consen  202 NAEALYVRGLCLYYNDNADKAINHFQQALR----LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN  277 (486)
T ss_pred             hhHHHHhcccccccccchHHHHHHHhhhhc----cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc
Confidence            467888899999999999999999999999    777654432222 122334567789999999999999999999999


Q ss_pred             hCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          476 ANPAH----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       476 ~dp~~----~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      +||+|    ++.|++||.++..+|+..+|+.+++.|++|||.-
T Consensus       278 idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy  320 (486)
T KOG0550|consen  278 IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY  320 (486)
T ss_pred             CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH
Confidence            99976    7789999999999999999999999999999864

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.58  E-value=1.7e-07  Score=73.73  Aligned_cols=67  Identities=28%  Similarity=0.489  Sum_probs=60.2

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 006908          457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK  524 (626)
Q Consensus       457 ~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~  524 (626)
                      +++.|+|.+|+..+.+++..+|++..+++.+|.||+..|++++|...|++++..+|++ +.++..++.
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~-~~~~~l~a~   67 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN-PEYQQLLAQ   67 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH-HHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH-HHHHHHHhc
Confidence            3678999999999999999999999999999999999999999999999999999996 666666554

...

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.57  E-value=8.7e-07  Score=84.49  Aligned_cols=104  Identities=19%  Similarity=0.276  Sum_probs=91.6

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +.-+.+-|..++.+|+|++|...|.+|+.     .|.-.        .....+-|++.|.+++|+++.|..+++++|+++
T Consensus       103 GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-----~P~Y~--------~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d  169 (250)
T COG3063         103 GDVLNNYGAFLCAQGRPEEAMQQFERALA-----DPAYG--------EPSDTLENLGLCALKAGQFDQAEEYLKRALELD  169 (250)
T ss_pred             cchhhhhhHHHHhCCChHHHHHHHHHHHh-----CCCCC--------CcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC
Confidence            55678899999999999999999999998     23221        124478999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      |+++-+..-+++.++..|+|-.|...+++...--+.+
T Consensus       170 p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~  206 (250)
T COG3063         170 PQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQ  206 (250)
T ss_pred             cCCChHHHHHHHHHHhcccchHHHHHHHHHHhccccc
Confidence            9999999999999999999999999999988776654

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.57  E-value=7.8e-07  Score=101.91  Aligned_cols=101  Identities=17%  Similarity=0.231  Sum_probs=83.7

Q ss_pred             HHHHhhhchhhccccHHH----HHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908          399 EKIRVTGNRLFKEGKFEL----AKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (626)
Q Consensus       399 ~~~k~~Gn~~f~~g~~~~----A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL  474 (626)
                      ..+...|..++..|++++    |+..|++++.    +.|.+           ..++.++|.++.++|++++|+..+.+++
T Consensus       247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~----l~P~~-----------~~a~~~lg~~l~~~g~~~eA~~~l~~al  311 (656)
T PRK15174        247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ----FNSDN-----------VRIVTLYADALIRTGQNEKAIPLLQQSL  311 (656)
T ss_pred             HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh----hCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            344567888888888885    7888888888    56665           4578888888888888888888888888


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       475 ~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      .++|+++.+++.+|.++..+|++++|++.|++++..+|++
T Consensus       312 ~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~  351 (656)
T PRK15174        312 ATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT  351 (656)
T ss_pred             HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            8888888888888888888888888888888888888875

>PLN02789 farnesyltranstransferase

Probab=98.56  E-value=1.2e-06  Score=90.77  Aligned_cols=112  Identities=17%  Similarity=0.098  Sum_probs=93.5

Q ss_pred             HHHHhhhchhhccc-cHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCH--HHHHHHHHHHHH
Q 006908          399 EKIRVTGNRLFKEG-KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC--RKSIEACNKVLD  475 (626)
Q Consensus       399 ~~~k~~Gn~~f~~g-~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~--~~A~~~~~~aL~  475 (626)
                      ..+..+|..+.+.+ ++.+|+..+.+++.    .+|.+           ..+|++++.++.+++++  .+++..+.++|+
T Consensus        72 taW~~R~~iL~~L~~~l~eeL~~~~~~i~----~npkn-----------yqaW~~R~~~l~~l~~~~~~~el~~~~kal~  136 (320)
T PLN02789         72 TVWHFRRLCLEALDADLEEELDFAEDVAE----DNPKN-----------YQIWHHRRWLAEKLGPDAANKELEFTRKILS  136 (320)
T ss_pred             HHHHHHHHHHHHcchhHHHHHHHHHHHHH----HCCcc-----------hHHhHHHHHHHHHcCchhhHHHHHHHHHHHH
Confidence            34455666666666 67899999999998    56665           45899999999999874  788999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (626)
Q Consensus       476 ~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~  526 (626)
                      ++|.|..||+.|+.++..+++|++|++++.++|++||.| ..++.....+.
T Consensus       137 ~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N-~sAW~~R~~vl  186 (320)
T PLN02789        137 LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN-NSAWNQRYFVI  186 (320)
T ss_pred             hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc-hhHHHHHHHHH
Confidence            999999999999999999999999999999999999998 45666655543

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.54  E-value=3.5e-06  Score=84.17  Aligned_cols=125  Identities=25%  Similarity=0.325  Sum_probs=98.8

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +..+...|..+++.|+|.+|+..|++++.    ..|..+        ....+.+++|.+|+++++|..|+..+++.++..
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~----~yP~s~--------~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~   99 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDN----RYPFGP--------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN   99 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCh--------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence            34456788888999999999999999999    555542        234567899999999999999999999999999


Q ss_pred             CCC---HHHHHHHHHHHHHcCC------------------HHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHHHHHHH
Q 006908          478 PAH---VKGLYRRGMAYMALGE------------------FEEAQRDFEMMMKVDKSSE--PDATAALSKLKKQRQEVES  534 (626)
Q Consensus       478 p~~---~ka~~~~g~a~~~lg~------------------~~eA~~~~~kAl~l~P~~~--~~~~~~l~~l~~~~~~~~~  534 (626)
                      |++   ..|+|.+|.++..++.                  ..+|+..|++.++.-|+..  ++++..+..++.++.+.+-
T Consensus       100 P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~  179 (243)
T PRK10866        100 PTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEL  179 (243)
T ss_pred             cCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHH
Confidence            877   4589999999866651                  2578899999999999864  4566666666666665443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.53  E-value=1.5e-06  Score=93.27  Aligned_cols=116  Identities=16%  Similarity=0.123  Sum_probs=81.4

Q ss_pred             HHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 006908          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (626)
Q Consensus       401 ~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~  480 (626)
                      +...+..+.+.|+|++|+..|.+++.    ..|.+..      .....+++++|.++++++++.+|+..+.++++.+|.+
T Consensus       144 ~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  213 (389)
T PRK11788        144 LQQLLEIYQQEKDWQKAIDVAERLEK----LGGDSLR------VEIAHFYCELAQQALARGDLDAARALLKKALAADPQC  213 (389)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHHHHH----hcCCcch------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC
Confidence            33445555555556666655555554    2222110      0123457788989999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908          481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (626)
Q Consensus       481 ~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~  526 (626)
                      ..+++.+|.++...|++++|++.|++++..+|.+...+...+..+.
T Consensus       214 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~  259 (389)
T PRK11788        214 VRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECY  259 (389)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHH
Confidence            9999999999999999999999999999888876434444444443

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.53  E-value=3.2e-07  Score=96.46  Aligned_cols=65  Identities=14%  Similarity=0.193  Sum_probs=62.0

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908          446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG---LYRRGMAYMALGEFEEAQRDFEMMMKV  510 (626)
Q Consensus       446 ~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka---~~~~g~a~~~lg~~~eA~~~~~kAl~l  510 (626)
                      ....|+|+|.+|+++++|++|+..|++||+++|++..+   ||++|.||..+|++++|+++|++|+++
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            35689999999999999999999999999999999865   999999999999999999999999998

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.53  E-value=1.4e-06  Score=106.30  Aligned_cols=124  Identities=18%  Similarity=0.277  Sum_probs=99.4

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhH--H-HHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE--G-KVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee--~-~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL  474 (626)
                      +..+...|..+++.|++++|+..|++++.    ..|.+...  + ..+......+..++|.++++.+++.+|+..|.+++
T Consensus       303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~----~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al  378 (1157)
T PRK11447        303 SEALGALGQAYSQQGDRARAVAQFEKALA----LDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQAR  378 (1157)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            44566788999999999999999999998    45544221  1 11111223345677999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908          475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (626)
Q Consensus       475 ~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~  526 (626)
                      .++|.++.+++.+|.++..+|++++|++.|++|++++|++ ..+...+..+.
T Consensus       379 ~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~-~~a~~~L~~l~  429 (1157)
T PRK11447        379 QVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGN-TNAVRGLANLY  429 (1157)
T ss_pred             HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998 45555555543

>PRK01490 tig trigger factor; Provisional

Probab=98.52  E-value=2.3e-07  Score=101.19  Aligned_cols=90  Identities=20%  Similarity=0.308  Sum_probs=77.5

Q ss_pred             CCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCCCcEEEEEeeccccccCCCCCCCC
Q 006908           45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA  124 (626)
Q Consensus        45 p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge~~~~~ip~~~~~g~~~~~~~~  124 (626)
                      ++.||.|+++|+++. +|+.|+++      ...++.|.+|.+.+++||+++|.||++|+++.|.+++...|+....    
T Consensus       158 ~~~gD~V~vd~~~~~-~g~~~~~~------~~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l----  226 (435)
T PRK01490        158 AENGDRVTIDFVGSI-DGEEFEGG------KAEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL----  226 (435)
T ss_pred             CCCCCEEEEEEEEEE-CCEECcCC------CCCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC----
Confidence            689999999999996 89888755      3468999999999999999999999999999999998888876655    


Q ss_pred             CCCCCCCceEEEEEEeeeeccccccc
Q 006908          125 PSTFPKDEELHFEIEMIDFAKAKIIA  150 (626)
Q Consensus       125 ~~~i~~~~~lv~~v~l~~~~~~~~v~  150 (626)
                           +|.++.|.|+|.++.....+.
T Consensus       227 -----agk~~~f~v~v~~V~~~~~pe  247 (435)
T PRK01490        227 -----AGKEATFKVTVKEVKEKELPE  247 (435)
T ss_pred             -----CCCeEEEEEEEEEeccCCCCC
Confidence                 489999999999997554433

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.52  E-value=1.9e-07  Score=75.73  Aligned_cols=66  Identities=24%  Similarity=0.405  Sum_probs=58.2

Q ss_pred             hhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908          445 KRNLLHLNVAACLLKLGECRKSIEACNKVLDAN-------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (626)
Q Consensus       445 ~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d-------p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l  510 (626)
                      ..+.+++|+|.+|..+|+|++|+.++++++.+.       |..+.+++++|.++..+|++++|++.|++|+++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            456799999999999999999999999999762       223779999999999999999999999999986

...

>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=3e-07  Score=98.60  Aligned_cols=90  Identities=21%  Similarity=0.346  Sum_probs=75.8

Q ss_pred             CCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCCCcEEEEEeeccccccCCCCCCCC
Q 006908           45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA  124 (626)
Q Consensus        45 p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge~~~~~ip~~~~~g~~~~~~~~  124 (626)
                      ++.||+|+|+|.++ .||..|.+      |....+.+.||+|++||||+.+|.||++|++..|.|.....|....+    
T Consensus       158 a~~gD~v~IDf~g~-iDg~~feg------g~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L----  226 (441)
T COG0544         158 AENGDRVTIDFEGS-VDGEEFEG------GKAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL----  226 (441)
T ss_pred             cccCCEEEEEEEEE-EcCeeccC------ccccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh----
Confidence            68999999999997 59988873      35678999999999999999999999999999887776677776665    


Q ss_pred             CCCCCCCceEEEEEEeeeeccccccc
Q 006908          125 PSTFPKDEELHFEIEMIDFAKAKIIA  150 (626)
Q Consensus       125 ~~~i~~~~~lv~~v~l~~~~~~~~v~  150 (626)
                           +|++..|.|+|..+.....+.
T Consensus       227 -----aGK~a~F~V~vkeVk~~elpE  247 (441)
T COG0544         227 -----AGKEATFKVKVKEVKKRELPE  247 (441)
T ss_pred             -----CCCceEEEEEEEEEeecCCCC
Confidence                 389999999999997554333

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.51  E-value=3.4e-06  Score=82.06  Aligned_cols=125  Identities=24%  Similarity=0.344  Sum_probs=95.7

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~  476 (626)
                      .+..+...|..+|..|+|.+|+..|++.+..    .|..        .....+.+.+|.++++.++|..|+..+.+.+..
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~----~P~s--------~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~   71 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDR----YPNS--------PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL   71 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-----TTS--------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----CCCC--------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3567788999999999999999999999984    3332        223457889999999999999999999999999


Q ss_pred             CCCCH---HHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHHHHHH
Q 006908          477 NPAHV---KGLYRRGMAYMALG-----------EFEEAQRDFEMMMKVDKSSE--PDATAALSKLKKQRQEVE  533 (626)
Q Consensus       477 dp~~~---ka~~~~g~a~~~lg-----------~~~eA~~~~~kAl~l~P~~~--~~~~~~l~~l~~~~~~~~  533 (626)
                      .|++.   .|+|.+|.+++.+.           ...+|+..|+..+..-|++.  .+++..+..|+..+.+.+
T Consensus        72 yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e  144 (203)
T PF13525_consen   72 YPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHE  144 (203)
T ss_dssp             -TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHH
Confidence            99874   59999999987753           24589999999999999863  456666666666665544

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.51  E-value=3.6e-07  Score=95.66  Aligned_cols=124  Identities=22%  Similarity=0.234  Sum_probs=103.0

Q ss_pred             hhhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHc---CCHHHHH
Q 006908          391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL---GECRKSI  467 (626)
Q Consensus       391 ~~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl---~~~~~A~  467 (626)
                      +-++.+.++..+++||..|-.+.+..|+..|.+++..    .|.           ...+|.|+|.+++|.   ++...|+
T Consensus       367 ~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~----~~~-----------~~~~l~nraa~lmkRkW~~d~~~Al  431 (758)
T KOG1310|consen  367 FYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQY----VPD-----------AIYLLENRAAALMKRKWRGDSYLAL  431 (758)
T ss_pred             hhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhh----ccc-----------hhHHHHhHHHHHHhhhccccHHHHH
Confidence            5678889999999999999999999999999999983    332           356999999999996   4788999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006908          468 EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (626)
Q Consensus       468 ~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~  530 (626)
                      .+|..||++||...||||+++.|+..++++.+|+.+...+....|.+ .+.......+.+.++
T Consensus       432 rDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd-~a~~~~v~~l~rDi~  493 (758)
T KOG1310|consen  432 RDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTD-VARQNFVLCLPRDIS  493 (758)
T ss_pred             HhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchh-hhhhhhhhccccchH
Confidence            99999999999999999999999999999999999888777777754 333333333333333

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.49  E-value=1.6e-06  Score=101.22  Aligned_cols=112  Identities=12%  Similarity=0.182  Sum_probs=99.2

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +..+...|..+.+.|++.+|+..|++++.    +.|.+.           .++.++|.++...+++.+|+..+.+++..+
T Consensus        49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~----~~P~~~-----------~a~~~la~~l~~~g~~~eA~~~l~~~l~~~  113 (765)
T PRK10049         49 ARGYAAVAVAYRNLKQWQNSLTLWQKALS----LEPQND-----------DYQRGLILTLADAGQYDEALVKAKQLVSGA  113 (765)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCH-----------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            34477888899999999999999999999    677763           467899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (626)
Q Consensus       478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~  526 (626)
                      |+++. ++.+|.++...|++++|+..|+++++++|++ ..+...+..+.
T Consensus       114 P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~-~~~~~~la~~l  160 (765)
T PRK10049        114 PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQT-QQYPTEYVQAL  160 (765)
T ss_pred             CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence            99999 9999999999999999999999999999998 55555555443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.49  E-value=5.8e-07  Score=88.96  Aligned_cols=94  Identities=20%  Similarity=0.312  Sum_probs=77.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006908          451 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (626)
Q Consensus       451 ~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~  530 (626)
                      -+-|.=+++.++|.+|+..|++||+++|.|+--|.+||.||.+||+|+.|+++++.|+.+||.. ..+.--|..+.-.+.
T Consensus        85 K~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y-skay~RLG~A~~~~g  163 (304)
T KOG0553|consen   85 KNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY-SKAYGRLGLAYLALG  163 (304)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH-HHHHHHHHHHHHccC
Confidence            3457778899999999999999999999999999999999999999999999999999999986 556666666665555


Q ss_pred             HHHHHHHHHHHccccC
Q 006908          531 EVESKARKQFKGLFDK  546 (626)
Q Consensus       531 ~~~~~~~~~~~~~~~~  546 (626)
                      +..++... |++.+.-
T Consensus       164 k~~~A~~a-ykKaLel  178 (304)
T KOG0553|consen  164 KYEEAIEA-YKKALEL  178 (304)
T ss_pred             cHHHHHHH-HHhhhcc
Confidence            55555544 5555443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.46  E-value=2.8e-06  Score=103.82  Aligned_cols=120  Identities=17%  Similarity=0.185  Sum_probs=97.3

Q ss_pred             HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHH-------------------------------Hhhhhh
Q 006908          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKV-------------------------------FVGKRN  447 (626)
Q Consensus       399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~-------------------------------~~~~~~  447 (626)
                      ..+...|..++..|++++|+..|++++.    +.|.+..-...                               ...+..
T Consensus       386 ~a~~~Lg~~~~~~g~~~eA~~~y~~aL~----~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~  461 (1157)
T PRK11447        386 YAVLGLGDVAMARKDYAAAERYYQQALR----MDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQN  461 (1157)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence            4556789999999999999999999998    55554321100                               011223


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 006908          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS  523 (626)
Q Consensus       448 ~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~  523 (626)
                      ..+.++|.++...+++.+|+..|.++++++|+++.+++++|.+|..+|++++|+..|+++++++|++ ..+...+.
T Consensus       462 ~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~-~~~~~a~a  536 (1157)
T PRK11447        462 DRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPND-PEQVYAYG  536 (1157)
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHH
Confidence            4567789999999999999999999999999999999999999999999999999999999999987 45554443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.45  E-value=6.3e-07  Score=91.81  Aligned_cols=120  Identities=23%  Similarity=0.270  Sum_probs=95.8

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +..+...|..+.+.|++++|+..|++|++    +.|++.           .+..+++.++..+|++.++...+.......
T Consensus       146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~----~~P~~~-----------~~~~~l~~~li~~~~~~~~~~~l~~~~~~~  210 (280)
T PF13429_consen  146 ARFWLALAEIYEQLGDPDKALRDYRKALE----LDPDDP-----------DARNALAWLLIDMGDYDEAREALKRLLKAA  210 (280)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHHH----H-TT-H-----------HHHHHHHHHHCTTCHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCH-----------HHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence            45567889999999999999999999999    788773           367788999999999999999998888888


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 006908          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVE  533 (626)
Q Consensus       478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~  533 (626)
                      |.++..+..+|.++..+|++++|+.+|+++++.+|+| +.+...+..+........
T Consensus       211 ~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d-~~~~~~~a~~l~~~g~~~  265 (280)
T PF13429_consen  211 PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD-PLWLLAYADALEQAGRKD  265 (280)
T ss_dssp             HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHT------
T ss_pred             cCHHHHHHHHHHHhccccccccccccccccccccccc-cccccccccccccccccc
Confidence            8888899999999999999999999999999999997 677777776654444433

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.44  E-value=5.4e-07  Score=70.28  Aligned_cols=64  Identities=17%  Similarity=0.400  Sum_probs=56.7

Q ss_pred             hhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 006908          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV  481 (626)
Q Consensus       403 ~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~  481 (626)
                      .+|..+++.|+|++|+..|++++.    ..|.+           ..+++.+|.|++.+|++.+|+..+.+++.++|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~----~~P~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALK----QDPDN-----------PEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHC----CSTTH-----------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            578899999999999999999999    66665           45899999999999999999999999999999875

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=2e-08  Score=95.72  Aligned_cols=275  Identities=17%  Similarity=0.149  Sum_probs=156.5

Q ss_pred             ccEEEEEeecCCC-cCCCCCCCeEEEEEEEEeC--CCcEEEec-CCCccEEEEcCCCCccchHHHhhccCCCCcEEEEEE
Q 006908          153 FGVVKKVINEGQG-WETPRAPYEVKAWISAKTG--DGKLILSH-REGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYV  228 (626)
Q Consensus       153 ~~v~~~i~~~G~g-~~~~~~g~~V~v~y~~~~~--~g~~~~s~-~~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v  228 (626)
                      .|+.|.|+..|.| .....+|..|+|||.....  .++++|.| .-|.|+.+++|.---.|-||..|.+|+++|.+.|+|
T Consensus        10 ~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~EvaqF~~   89 (329)
T KOG0545|consen   10 EGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHEVAQFWC   89 (329)
T ss_pred             hhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhhHHHhhh
Confidence            4788999999998 3556789999999998654  47788866 479999999999999999999999999999999998


Q ss_pred             eCCcc--CCCCCCCCCCCcceEEEEEEEeeEEeeeeecCCCcEEEEEeeCCCCCCCCCCCCCCCeEE--EEEEEEEecCC
Q 006908          229 TSQYL--TPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLC--VHYKGMLLNEE  304 (626)
Q Consensus       229 ~~~~~--~g~~~~~~ip~~~~l~~~v~l~~~~~~~d~~~dg~v~k~il~~G~G~~~~~~p~~~~~V~--v~y~~~~~~~~  304 (626)
                      ....-  |.     .+           -++   .+|+.           .  |..|..+...-+-+.  +.|.|.-.   
T Consensus        90 d~~~~vqYP-----fv-----------sks---LRdia-----------~--GK~p~e~~~H~Cg~a~m~~~~glGy---  134 (329)
T KOG0545|consen   90 DTIHTVQYP-----FV-----------SKS---LRDIA-----------Q--GKDPTEWHRHCCGLANMFAYHGLGY---  134 (329)
T ss_pred             hhhheeech-----hH-----------HHH---HHHHh-----------c--CCCcchhhhhhhhhHHHHHhcCCCh---
Confidence            65421  21     00           000   11211           1  332211111112222  22322100   


Q ss_pred             CcEEEeeccCCCCCCEEEEcCCCcchhhHHHHhhcCCCCCEEEEEecCC-------CccccCCCC-CCCCCCcceeeeee
Q 006908          305 KKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPD-------YAYDKFLRP-ANVPEGAHIQWEIE  376 (626)
Q Consensus       305 g~~~~dt~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~~~i~~~-------~ayg~~~~~-~~ip~~~~l~~~ve  376 (626)
                       +-. |.-. ..++|+.|++--      |..-..+-...|.|.+.-...       ..-|..-+. ..... +.-.|.=.
T Consensus       135 -edL-DeL~-knPqpL~Fviel------lqVe~P~qYq~e~WqlsddeKmkav~~l~q~GN~lfk~~~ykE-A~~~YreA  204 (329)
T KOG0545|consen  135 -EDL-DELQ-KNPQPLVFVIEL------LQVEAPSQYQRETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKE-ASSKYREA  204 (329)
T ss_pred             -hhH-HHHh-hCCCceEeehhh------hhccCchhhccccccCCchHhhhhhHHHHHhhhhhhhhccHHH-HHHHHHHH
Confidence             000 1111 247888886532      221111212222221111000       000000000 00000 00111101


Q ss_pred             ec---ccccCCCCCCCChhhHHH-HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHH
Q 006908          377 LL---GFEKPKDWTGLSFDGIMD-EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLN  452 (626)
Q Consensus       377 l~---~~~~~~~~~~~~~~e~~~-~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~N  452 (626)
                      +.   .+...+.+++-.|-+.-. ....+.+...++.+.|+|-++++..+..|.    ..|.+           ..+|+.
T Consensus       205 i~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~----~~~~n-----------vKA~fr  269 (329)
T KOG0545|consen  205 IICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR----HHPGN-----------VKAYFR  269 (329)
T ss_pred             HHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh----cCCch-----------HHHHHH
Confidence            11   111111111111122111 233566788899999999999999999998    66665           679999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 006908          453 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRR  487 (626)
Q Consensus       453 la~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~  487 (626)
                      +|.++.-.-+..+|.+++..+|+++|.-+.+.-|-
T Consensus       270 RakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrE  304 (329)
T KOG0545|consen  270 RAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRE  304 (329)
T ss_pred             HHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHH
Confidence            99999999999999999999999999766655443

>PLN02789 farnesyltranstransferase

Probab=98.41  E-value=3.4e-06  Score=87.52  Aligned_cols=108  Identities=15%  Similarity=0.128  Sum_probs=93.2

Q ss_pred             hhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHH
Q 006908          408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-ECRKSIEACNKVLDANPAHVKGLYR  486 (626)
Q Consensus       408 ~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~-~~~~A~~~~~~aL~~dp~~~ka~~~  486 (626)
                      +...+++++|+..+.++|.    ++|.+           .++|++++.|+.+++ .+.+|+..+.+++..+|++..+|+.
T Consensus        47 l~~~e~serAL~lt~~aI~----lnP~~-----------ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~  111 (320)
T PLN02789         47 YASDERSPRALDLTADVIR----LNPGN-----------YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHH  111 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHH----HCchh-----------HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHH
Confidence            4566789999999999999    67766           579999999999999 6899999999999999999999999


Q ss_pred             HHHHHHHcCCH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 006908          487 RGMAYMALGEF--EEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQE  531 (626)
Q Consensus       487 ~g~a~~~lg~~--~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~  531 (626)
                      |+.++..+++.  ++++..++++++++|.| -.++.....+...+..
T Consensus       112 R~~~l~~l~~~~~~~el~~~~kal~~dpkN-y~AW~~R~w~l~~l~~  157 (320)
T PLN02789        112 RRWLAEKLGPDAANKELEFTRKILSLDAKN-YHAWSHRQWVLRTLGG  157 (320)
T ss_pred             HHHHHHHcCchhhHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHhhh
Confidence            99999999974  78999999999999998 4677666665554443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.40  E-value=4.2e-06  Score=78.78  Aligned_cols=111  Identities=14%  Similarity=0.144  Sum_probs=89.3

Q ss_pred             hhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--
Q 006908          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH--  480 (626)
Q Consensus       403 ~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~--  480 (626)
                      .+.+.+|-...|..+...+...++    ...         ....+.+++++|.++..+++|++|+..+.+++.+.|+.  
T Consensus         4 ~~~~~~~~~~~~~~~~~~l~~~~~----~~~---------~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~   70 (168)
T CHL00033          4 SQRNDNFIDKTFTIVADILLRILP----TTS---------GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD   70 (168)
T ss_pred             ccccccccccccccchhhhhHhcc----CCc---------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh
Confidence            356777877788888877755544    222         12246789999999999999999999999999997653  


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006908          481 -VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (626)
Q Consensus       481 -~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~  527 (626)
                       +.+|+++|.++..+|++++|+..|++|+.++|.+ ......+..+..
T Consensus        71 ~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~-~~~~~~la~i~~  117 (168)
T CHL00033         71 RSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL-PQALNNMAVICH  117 (168)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHH
Confidence             4589999999999999999999999999999987 456666666554

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.40  E-value=3.8e-06  Score=99.25  Aligned_cols=114  Identities=25%  Similarity=0.406  Sum_probs=93.5

Q ss_pred             HHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006908          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (626)
Q Consensus       396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~  475 (626)
                      ..+..+...|..++..|+|++|+..|.+++.    ..|.+           ..++..+|.+++..++|.+|+..+.+++.
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~  187 (899)
T TIGR02917       123 GAAELLALRGLAYLGLGQLELAQKSYEQALA----IDPRS-----------LYAKLGLAQLALAENRFDEARALIDEVLT  187 (899)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCC-----------hhhHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3466778899999999999999999999998    55554           34678888888888999999999998888


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006908          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (626)
Q Consensus       476 ~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l  525 (626)
                      .+|.+..+++.+|.++...|++++|+..|++++.++|.+ ..+...+..+
T Consensus       188 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~~~~~  236 (899)
T TIGR02917       188 ADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNN-PAVLLALATI  236 (899)
T ss_pred             hCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHH
Confidence            888888888888988888899999999999998888886 4444444443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.40  E-value=1.9e-06  Score=88.69  Aligned_cols=113  Identities=17%  Similarity=0.174  Sum_probs=98.5

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +..+.++||..|..|++++|+..|+.||+.               ......+++|+|..+-++|+.++|+.+|-+.-.+-
T Consensus       490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~n---------------dasc~ealfniglt~e~~~~ldeald~f~klh~il  554 (840)
T KOG2003|consen  490 AAALTNKGNIAFANGDLDKAAEFYKEALNN---------------DASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL  554 (840)
T ss_pred             HHHhhcCCceeeecCcHHHHHHHHHHHHcC---------------chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH
Confidence            446778999999999999999999999981               11234578999999999999999999999887777


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (626)
Q Consensus       478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~  526 (626)
                      -+|+..++.++++|..+.+..+|+++|.+|..+-|++ +.+...|..|.
T Consensus       555 ~nn~evl~qianiye~led~aqaie~~~q~~slip~d-p~ilskl~dly  602 (840)
T KOG2003|consen  555 LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPND-PAILSKLADLY  602 (840)
T ss_pred             HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCC-HHHHHHHHHHh
Confidence            7899999999999999999999999999999999987 67777776664

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.39  E-value=3.6e-06  Score=77.71  Aligned_cols=99  Identities=28%  Similarity=0.325  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhCCCCHHH
Q 006908          414 FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG----------ECRKSIEACNKVLDANPAHVKG  483 (626)
Q Consensus       414 ~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~----------~~~~A~~~~~~aL~~dp~~~ka  483 (626)
                      |+.|.+.|+....    .+|.+.           ..++|-|.+++.+.          .+.+|+.-+++||.++|+...|
T Consensus         7 FE~ark~aea~y~----~nP~Da-----------dnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdA   71 (186)
T PF06552_consen    7 FEHARKKAEAAYA----KNPLDA-----------DNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDA   71 (186)
T ss_dssp             HHHHHHHHHHHHH----H-TT-H-----------HHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred             HHHHHHHHHHHHH----hCcHhH-----------HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHH
Confidence            6778888888777    577763           35566666665553          4678899999999999999999


Q ss_pred             HHHHHHHHHHcCC-----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006908          484 LYRRGMAYMALGE-----------FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (626)
Q Consensus       484 ~~~~g~a~~~lg~-----------~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~  528 (626)
                      ++.+|+||..++.           |++|..+|++|..++|+| ...+..|+...+.
T Consensus        72 lw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~~ka  126 (186)
T PF06552_consen   72 LWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN-ELYRKSLEMAAKA  126 (186)
T ss_dssp             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHhh
Confidence            9999999998765           789999999999999998 5777777776543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.39  E-value=6.1e-06  Score=67.43  Aligned_cols=84  Identities=27%  Similarity=0.435  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006908          449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (626)
Q Consensus       449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~  528 (626)
                      +++++|.+++..+++.+|+..+.+++...|.+..+++.+|.++...+++++|+..|++++.+.|.+ ..+...+..+...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~   80 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN-AKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-hhHHHHHHHHHHH
Confidence            578899999999999999999999999999999999999999999999999999999999999987 4556566655544


Q ss_pred             HHHHH
Q 006908          529 RQEVE  533 (626)
Q Consensus       529 ~~~~~  533 (626)
                      ..+..
T Consensus        81 ~~~~~   85 (100)
T cd00189          81 LGKYE   85 (100)
T ss_pred             HHhHH
Confidence            44433

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.38  E-value=2.9e-06  Score=92.21  Aligned_cols=144  Identities=19%  Similarity=0.208  Sum_probs=113.8

Q ss_pred             HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (626)
Q Consensus       395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL  474 (626)
                      +..+..++..|..|...++|.+|+..|++|+.++..+...+       +...+.++.|||..|.+.|+|.+|..+|.+|+
T Consensus       238 l~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~-------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al  310 (508)
T KOG1840|consen  238 LVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED-------HPAVAATLNNLAVLYYKQGKFAEAEEYCERAL  310 (508)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence            44566666799999999999999999999999887665554       45668899999999999999999999999999


Q ss_pred             HhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCC--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006908          475 DAN--------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD-----KSS--EPDATAALSKLKKQRQEVESKARKQ  539 (626)
Q Consensus       475 ~~d--------p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~-----P~~--~~~~~~~l~~l~~~~~~~~~~~~~~  539 (626)
                      ++-        |.-+..+...+..+...+++++|+..|++++++-     ++|  ...+..+|..+.....+..+.. .+
T Consensus       311 ~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~-~~  389 (508)
T KOG1840|consen  311 EIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAE-EL  389 (508)
T ss_pred             HHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHH-HH
Confidence            774        2336688999999999999999999999999872     222  2456777777776666555544 34


Q ss_pred             HHccccC
Q 006908          540 FKGLFDK  546 (626)
Q Consensus       540 ~~~~~~~  546 (626)
                      +++....
T Consensus       390 ~k~ai~~  396 (508)
T KOG1840|consen  390 YKKAIQI  396 (508)
T ss_pred             HHHHHHH
Confidence            5554444

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.38  E-value=6.7e-06  Score=81.77  Aligned_cols=125  Identities=14%  Similarity=0.169  Sum_probs=98.7

Q ss_pred             HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHc--------CCHHHHHHHH
Q 006908          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL--------GECRKSIEAC  470 (626)
Q Consensus       399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl--------~~~~~A~~~~  470 (626)
                      ..+...|..+++.|+|++|+..|+++++    ..|.+..        ...+++++|.|++++        +++..|+..+
T Consensus        71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~----~~p~~~~--------~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~  138 (235)
T TIGR03302        71 QAQLDLAYAYYKSGDYAEAIAAADRFIR----LHPNHPD--------ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAF  138 (235)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH----HCcCCCc--------hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence            4567789999999999999999999999    5555422        123678899999887        8899999999


Q ss_pred             HHHHHhCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHHHH
Q 006908          471 NKVLDANPAHVKGL-----------------YRRGMAYMALGEFEEAQRDFEMMMKVDKSS--EPDATAALSKLKKQRQE  531 (626)
Q Consensus       471 ~~aL~~dp~~~ka~-----------------~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~--~~~~~~~l~~l~~~~~~  531 (626)
                      .+++..+|.+..++                 +.+|..++..|++.+|+..|++++...|++  ...++..+..+.....+
T Consensus       139 ~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~  218 (235)
T TIGR03302       139 QELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGL  218 (235)
T ss_pred             HHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC
Confidence            99999999986432                 467889999999999999999999998864  23566666666655555


Q ss_pred             HHHH
Q 006908          532 VESK  535 (626)
Q Consensus       532 ~~~~  535 (626)
                      ..+.
T Consensus       219 ~~~A  222 (235)
T TIGR03302       219 KDLA  222 (235)
T ss_pred             HHHH
Confidence            4443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.37  E-value=3.9e-06  Score=76.47  Aligned_cols=86  Identities=14%  Similarity=0.065  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006908          449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (626)
Q Consensus       449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~  528 (626)
                      ..+-+|.-++..|++++|...|.-+..+||.++..||++|.|+..+|+|++|+..|.+|+.++|++ +....++..+.-.
T Consensus        37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd-p~~~~~ag~c~L~  115 (157)
T PRK15363         37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA-PQAPWAAAECYLA  115 (157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHH
Confidence            456688999999999999999999999999999999999999999999999999999999999987 6777777777665


Q ss_pred             HHHHHHH
Q 006908          529 RQEVESK  535 (626)
Q Consensus       529 ~~~~~~~  535 (626)
                      ..+....
T Consensus       116 lG~~~~A  122 (157)
T PRK15363        116 CDNVCYA  122 (157)
T ss_pred             cCCHHHH
Confidence            5544433

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.37  E-value=3.5e-06  Score=89.18  Aligned_cols=84  Identities=18%  Similarity=0.191  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 006908          450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (626)
Q Consensus       450 ~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~  529 (626)
                      +...|..++..++|..|+..|.+||+++|+++.+|+++|.+|..+|++++|+.+|++|+.++|++ ..+...+..+...+
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~-~~a~~~lg~~~~~l   83 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL-AKAYLRKGTACMKL   83 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHh
Confidence            45578999999999999999999999999999999999999999999999999999999999997 56776766665555


Q ss_pred             HHHHH
Q 006908          530 QEVES  534 (626)
Q Consensus       530 ~~~~~  534 (626)
                      .+...
T Consensus        84 g~~~e   88 (356)
T PLN03088         84 EEYQT   88 (356)
T ss_pred             CCHHH
Confidence            44443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.36  E-value=7.9e-06  Score=87.61  Aligned_cols=114  Identities=21%  Similarity=0.219  Sum_probs=93.1

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +..+...|..+++.|++++|+..|.+++.    ..|..           ..+++++|.++.++|++.+|+..+.+++..+
T Consensus       180 ~~~~~~la~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  244 (389)
T PRK11788        180 AHFYCELAQQALARGDLDAARALLKKALA----ADPQC-----------VRASILLGDLALAQGDYAAAIEALERVEEQD  244 (389)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHh----HCcCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence            33456778888899999999999999998    44443           3478889999999999999999999999999


Q ss_pred             CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006908          478 PAH-VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (626)
Q Consensus       478 p~~-~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~  528 (626)
                      |.+ ..++..++.+|..+|++++|+..|+++++++|++ ..+ ..+..+...
T Consensus       245 p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~-~~~-~~la~~~~~  294 (389)
T PRK11788        245 PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA-DLL-LALAQLLEE  294 (389)
T ss_pred             hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hHH-HHHHHHHHH
Confidence            877 4678899999999999999999999999999986 333 444444333

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.36  E-value=5.8e-06  Score=97.68  Aligned_cols=128  Identities=14%  Similarity=0.238  Sum_probs=102.6

Q ss_pred             HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006908          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (626)
Q Consensus       400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~  479 (626)
                      .+...|..++..|+|++|+..|.+++.    ..|.+            ..+.+++.++.++|++.+|+..+.+++..+|+
T Consensus       705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~----~~~~~------------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~  768 (899)
T TIGR02917       705 GFELEGDLYLRQKDYPAAIQAYRKALK----RAPSS------------QNAIKLHRALLASGNTAEAVKTLEAWLKTHPN  768 (899)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHh----hCCCc------------hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            345578888899999999999999998    44443            35678999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC
Q 006908          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDK  546 (626)
Q Consensus       480 ~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  546 (626)
                      +..+++.+|.++..+|++++|+..|+++++.+|++ ..+...+..+......  .+....+.+.+..
T Consensus       769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~--~~A~~~~~~~~~~  832 (899)
T TIGR02917       769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDN-AVVLNNLAWLYLELKD--PRALEYAEKALKL  832 (899)
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCc--HHHHHHHHHHHhh
Confidence            99999999999999999999999999999999987 5677777666555444  2244455555443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.34  E-value=1.7e-06  Score=86.07  Aligned_cols=111  Identities=20%  Similarity=0.332  Sum_probs=89.4

Q ss_pred             hhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CC
Q 006908          404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP---AH  480 (626)
Q Consensus       404 ~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp---~~  480 (626)
                      .|.-+|-.++.+.|+++|++.|.    ..-.+           ..+++|+|.|++-.++|+-++..+.+|+...-   .-
T Consensus       330 ia~~yfY~~~PE~AlryYRRiLq----mG~~s-----------peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~a  394 (478)
T KOG1129|consen  330 IAVGYFYDNNPEMALRYYRRILQ----MGAQS-----------PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQA  394 (478)
T ss_pred             eeeccccCCChHHHHHHHHHHHH----hcCCC-----------hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchh
Confidence            34556666667777777777666    22223           24899999999999999999999999997643   34


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006908          481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (626)
Q Consensus       481 ~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~  530 (626)
                      +..||++|.+....|++.-|..+|+-||..||++ .++..+|..+..+..
T Consensus       395 aDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h-~ealnNLavL~~r~G  443 (478)
T KOG1129|consen  395 ADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH-GEALNNLAVLAARSG  443 (478)
T ss_pred             hhhhhccceeEEeccchHHHHHHHHHHhccCcch-HHHHHhHHHHHhhcC
Confidence            6789999999999999999999999999999998 678888888765443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.33  E-value=6.1e-06  Score=81.35  Aligned_cols=106  Identities=16%  Similarity=0.277  Sum_probs=92.4

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +..+.+.|-.+++.|+|..|...|..-+..++.    +        .....+++-||.|++.+|+|.+|...|..+..-.
T Consensus       141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~----s--------~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~  208 (262)
T COG1729         141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPN----S--------TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY  208 (262)
T ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----C--------cccchhHHHHHHHHHhcccchHHHHHHHHHHHhC
Confidence            344788999999999999999999999995443    2        1224478889999999999999999999999998


Q ss_pred             CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 006908          478 PAHV---KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (626)
Q Consensus       478 p~~~---ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~  515 (626)
                      |.++   .++|.+|.+...+|+.++|.+.|+++++--|+..
T Consensus       209 P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~  249 (262)
T COG1729         209 PKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD  249 (262)
T ss_pred             CCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence            8774   5799999999999999999999999999999973

>TIGR00115 tig trigger factor

Probab=98.32  E-value=2.6e-06  Score=92.14  Aligned_cols=86  Identities=17%  Similarity=0.150  Sum_probs=72.9

Q ss_pred             CCCCCCeEEEEEEEEeCCCcEEEecCCCccEEEEcCCCCccchHHHhhccCCCCcEEEEEEeCCccCCCCCCCCCCCcce
Q 006908          168 TPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEE  247 (626)
Q Consensus       168 ~~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~ip~~~~  247 (626)
                      .++.||.|+++|++.. +|..++++. +.++.|.+|.+.+++||+++|.||++|++++|.++....|+...    -++.+
T Consensus       146 ~~~~gD~V~v~~~~~~-dg~~~~~~~-~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~----~~gk~  219 (408)
T TIGR00115       146 AAEKGDRVTIDFEGFI-DGEAFEGGK-AENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEE----LAGKE  219 (408)
T ss_pred             ccCCCCEEEEEEEEEE-CCEECcCCC-CCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCccc----CCCCe
Confidence            5788999999999954 888887653 58999999999999999999999999999999999666665332    26789


Q ss_pred             EEEEEEEeeEEe
Q 006908          248 VHFEVELVHLIQ  259 (626)
Q Consensus       248 l~~~v~l~~~~~  259 (626)
                      +.|+|+|+++.+
T Consensus       220 ~~f~v~i~~I~~  231 (408)
T TIGR00115       220 ATFKVTVKEVKE  231 (408)
T ss_pred             EEEEEEEEEecc
Confidence            999999999853

Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.32  E-value=7e-06  Score=95.97  Aligned_cols=101  Identities=11%  Similarity=0.081  Sum_probs=93.6

Q ss_pred             HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006908          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (626)
Q Consensus       399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp  478 (626)
                      ..+...|..+...|++++|+..|++++.    ..|.+           ..+++++|.++..+|++.+|+..+++++.++|
T Consensus       360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~----~~P~n-----------~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P  424 (765)
T PRK10049        360 QGQSLLSQVAKYSNDLPQAEMRARELAY----NAPGN-----------QGLRIDYASVLQARGWPRAAENELKKAEVLEP  424 (765)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Confidence            3445678888899999999999999999    67776           35899999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       479 ~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      ++..+++.+|.++..+++|++|.+.++++++..|++
T Consensus       425 d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~  460 (765)
T PRK10049        425 RNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQD  460 (765)
T ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999999999999998

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=7.7e-06  Score=81.60  Aligned_cols=103  Identities=21%  Similarity=0.329  Sum_probs=91.6

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcC---CHHHHHHHHHHHH
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG---ECRKSIEACNKVL  474 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~---~~~~A~~~~~~aL  474 (626)
                      ++.+-..|..++..|++..|...|.+|++    +.|++.+           ++.-+|.+++...   .-.++...+.++|
T Consensus       156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~r----L~g~n~~-----------~~~g~aeaL~~~a~~~~ta~a~~ll~~al  220 (287)
T COG4235         156 AEGWDLLGRAYMALGRASDALLAYRNALR----LAGDNPE-----------ILLGLAEALYYQAGQQMTAKARALLRQAL  220 (287)
T ss_pred             chhHHHHHHHHHHhcchhHHHHHHHHHHH----hCCCCHH-----------HHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence            55667799999999999999999999999    7888744           6666777776654   4788999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 006908          475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (626)
Q Consensus       475 ~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~  515 (626)
                      .+||.|+.+++.+|..++..|+|.+|+..+++.|.+.|.+.
T Consensus       221 ~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~  261 (287)
T COG4235         221 ALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD  261 (287)
T ss_pred             hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence            99999999999999999999999999999999999999874

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.29  E-value=4.7e-06  Score=91.46  Aligned_cols=102  Identities=24%  Similarity=0.333  Sum_probs=92.7

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHH--HHHHHHH
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIE--ACNKVLD  475 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~--~~~~aL~  475 (626)
                      +..+...|..+..+|++.+|...|..|+.    ++|++           ..+..-+|.|+++.|+..-|..  ....+++
T Consensus       684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~----ldP~h-----------v~s~~Ala~~lle~G~~~la~~~~~L~dalr  748 (799)
T KOG4162|consen  684 ASVYYLRGLLLEVKGQLEEAKEAFLVALA----LDPDH-----------VPSMTALAELLLELGSPRLAEKRSLLSDALR  748 (799)
T ss_pred             HHHHHHhhHHHHHHHhhHHHHHHHHHHHh----cCCCC-----------cHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence            45677889999999999999999999999    78877           4577779999999999888888  9999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       476 ~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      +||.|.+|||.+|.++..+|+.++|..+|..|+++++.+
T Consensus       749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~  787 (799)
T KOG4162|consen  749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN  787 (799)
T ss_pred             hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence            999999999999999999999999999999999999876

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.29  E-value=5.2e-06  Score=76.14  Aligned_cols=97  Identities=21%  Similarity=0.352  Sum_probs=62.5

Q ss_pred             HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006908          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (626)
Q Consensus       399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp  478 (626)
                      ......|..++..|+|++|+..|+.++.    ..++.        .+...+.+++|.|++.+++|++|+..+..+ .-.+
T Consensus        49 ~A~l~lA~~~~~~g~~~~A~~~l~~~~~----~~~d~--------~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~  115 (145)
T PF09976_consen   49 LAALQLAKAAYEQGDYDEAKAALEKALA----NAPDP--------ELKPLARLRLARILLQQGQYDEALATLQQI-PDEA  115 (145)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHh----hCCCH--------HHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcc
Confidence            3444567777777777777777777776    22211        223446667777777777777777777552 2233


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908          479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMM  508 (626)
Q Consensus       479 ~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl  508 (626)
                      -.+.++..+|.+|...|++++|+..|++||
T Consensus       116 ~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  116 FKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            345566677777777777777777777764

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.28  E-value=1.8e-06  Score=67.87  Aligned_cols=67  Identities=27%  Similarity=0.397  Sum_probs=58.1

Q ss_pred             hhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 006908          408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRR  487 (626)
Q Consensus       408 ~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~  487 (626)
                      +++.|+|++|+..|++++.    ..|.+           ..+++++|.||+++|++++|...+.+++..+|+++..+.-+
T Consensus         1 ll~~~~~~~A~~~~~~~l~----~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~   65 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQ----RNPDN-----------PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL   65 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHH----HTTTS-----------HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            4678999999999999999    67776           45888999999999999999999999999999987777666


Q ss_pred             HH
Q 006908          488 GM  489 (626)
Q Consensus       488 g~  489 (626)
                      ++
T Consensus        66 a~   67 (68)
T PF14559_consen   66 AQ   67 (68)
T ss_dssp             HH
T ss_pred             hc
Confidence            64

...

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.28  E-value=2.2e-06  Score=69.44  Aligned_cols=73  Identities=23%  Similarity=0.309  Sum_probs=61.1

Q ss_pred             HHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006908          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (626)
Q Consensus       396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~  475 (626)
                      ..+..+...|..++..|+|++|+..|++|+.......+ +       ....+.++.|+|.|+..+|++++|+.++.++++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~-------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD-D-------HPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT-H-------HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC-C-------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            46778899999999999999999999999997443322 1       233478999999999999999999999999987


Q ss_pred             h
Q 006908          476 A  476 (626)
Q Consensus       476 ~  476 (626)
                      +
T Consensus        75 i   75 (78)
T PF13424_consen   75 I   75 (78)
T ss_dssp             H
T ss_pred             h
Confidence            6

...

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.26  E-value=9.2e-06  Score=86.74  Aligned_cols=93  Identities=11%  Similarity=0.091  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006908          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (626)
Q Consensus       448 ~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~  527 (626)
                      .++.-||..|+-.++|++|+.+|+.||..+|++..-|.|+|-++..-.+.++|+..|++||+|.|.. ..++.+|.....
T Consensus       431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y-VR~RyNlgIS~m  509 (579)
T KOG1125|consen  431 DVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY-VRVRYNLGISCM  509 (579)
T ss_pred             hHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe-eeeehhhhhhhh
Confidence            4678899999999999999999999999999999999999999999999999999999999999997 578889988877


Q ss_pred             HHHHHHHHHHHHHH
Q 006908          528 QRQEVESKARKQFK  541 (626)
Q Consensus       528 ~~~~~~~~~~~~~~  541 (626)
                      -+..++++.+....
T Consensus       510 NlG~ykEA~~hlL~  523 (579)
T KOG1125|consen  510 NLGAYKEAVKHLLE  523 (579)
T ss_pred             hhhhHHHHHHHHHH
Confidence            77777776655543

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.24  E-value=2.4e-05  Score=87.43  Aligned_cols=128  Identities=20%  Similarity=0.303  Sum_probs=97.2

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHH-----------------------hhhhhHHHHHH
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVF-----------------------VGKRNLLHLNV  453 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~-----------------------~~~~~~~~~Nl  453 (626)
                      .+..+..+||.+|.+|++++|...+..+|+    ..|.+..-..++                       .+--...|..+
T Consensus       138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIk----qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~l  213 (895)
T KOG2076|consen  138 ELRQLLGEANNLFARGDLEEAEEILMEVIK----QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRL  213 (895)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----hCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHH
Confidence            477888999999999999999999999998    555554322110                       00011355666


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006908          454 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (626)
Q Consensus       454 a~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~  530 (626)
                      |.-..+++++..|+-+|++||.++|.+.+.+++++..|.++|++..|...|.+++.++|.  .+....+..+....+
T Consensus       214 adls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~--~d~er~~d~i~~~~~  288 (895)
T KOG2076|consen  214 ADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP--VDIERIEDLIRRVAH  288 (895)
T ss_pred             HHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc--hhHHHHHHHHHHHHH
Confidence            777777888999999999999999999999999999999999999999999999999984  345555555544333

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.22  E-value=2.8e-06  Score=87.48  Aligned_cols=97  Identities=19%  Similarity=0.343  Sum_probs=89.0

Q ss_pred             hhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 006908          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK  482 (626)
Q Consensus       403 ~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~k  482 (626)
                      +.||.+|++.+|.+|+++|+.||...++++          ..+++.+++|+|..+.++|.|..|+..|..+++..| |.+
T Consensus       242 nigni~~kkr~fskaikfyrmaldqvpsin----------k~~rikil~nigvtfiq~gqy~dainsfdh~m~~~p-n~~  310 (840)
T KOG2003|consen  242 NIGNIHFKKREFSKAIKFYRMALDQVPSIN----------KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAP-NFI  310 (840)
T ss_pred             eecceeeehhhHHHHHHHHHHHHhhccccc----------hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCc-cHH
Confidence            689999999999999999999999666553          456788999999999999999999999999999998 778


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908          483 GLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (626)
Q Consensus       483 a~~~~g~a~~~lg~~~eA~~~~~kAl~l  510 (626)
                      +-|++-.|++..|+-+.-.+.|++.+.+
T Consensus       311 a~~nl~i~~f~i~d~ekmkeaf~kli~i  338 (840)
T KOG2003|consen  311 AALNLIICAFAIGDAEKMKEAFQKLIDI  338 (840)
T ss_pred             hhhhhhhhheecCcHHHHHHHHHHHhcC
Confidence            8899999999999999999999999876

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.22  E-value=2e-05  Score=69.35  Aligned_cols=98  Identities=17%  Similarity=0.136  Sum_probs=84.1

Q ss_pred             HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006908          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (626)
Q Consensus       400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~  479 (626)
                      .+.+.|..+-..|+.++|+.+|++|+.    .....        .....++.++|.++..+|++++|+..+++++.-.|+
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~----~gL~~--------~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~   70 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALA----AGLSG--------ADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD   70 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCc--------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            456788888899999999999999998    22222        123458889999999999999999999999999887


Q ss_pred             ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006908          480 ---HVKGLYRRGMAYMALGEFEEAQRDFEMMMK  509 (626)
Q Consensus       480 ---~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~  509 (626)
                         +....+.++.++..+|++++|+..+-.++.
T Consensus        71 ~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   71 DELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence               778888899999999999999999988875

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.20  E-value=1.7e-05  Score=69.35  Aligned_cols=98  Identities=23%  Similarity=0.332  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHH
Q 006908          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE--PDATAAL  522 (626)
Q Consensus       448 ~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~---~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~--~~~~~~l  522 (626)
                      ..++++|.++++.++|.+|+..|.+++..+|++   ..+++.+|.++...+++++|+..|++++..+|++.  ..+...+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            367889999999999999999999999999876   67999999999999999999999999999998852  3455555


Q ss_pred             HHHHHHHHHHHHHHHHHHHccccC
Q 006908          523 SKLKKQRQEVESKARKQFKGLFDK  546 (626)
Q Consensus       523 ~~l~~~~~~~~~~~~~~~~~~~~~  546 (626)
                      ..+........+.. ..+......
T Consensus        83 ~~~~~~~~~~~~A~-~~~~~~~~~  105 (119)
T TIGR02795        83 GMSLQELGDKEKAK-ATLQQVIKR  105 (119)
T ss_pred             HHHHHHhCChHHHH-HHHHHHHHH
Confidence            55554444333322 344444433

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.19  E-value=1.3e-05  Score=75.83  Aligned_cols=82  Identities=16%  Similarity=0.274  Sum_probs=70.7

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 006908          446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAAL  522 (626)
Q Consensus       446 ~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~---~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l  522 (626)
                      .+.+++++|.++...|+|.+|+.+|.+++.+.|+.   +.+++++|.++..+|++++|+..|++|+.++|.+ ......+
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l  112 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ-PSALNNI  112 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHHHHHH
Confidence            46689999999999999999999999999987653   5799999999999999999999999999999987 5555555


Q ss_pred             HHHHHH
Q 006908          523 SKLKKQ  528 (626)
Q Consensus       523 ~~l~~~  528 (626)
                      ..+...
T Consensus       113 g~~~~~  118 (172)
T PRK02603        113 AVIYHK  118 (172)
T ss_pred             HHHHHH
Confidence            555433

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.19  E-value=7.3e-06  Score=65.35  Aligned_cols=70  Identities=26%  Similarity=0.455  Sum_probs=61.9

Q ss_pred             hchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 006908          405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGL  484 (626)
Q Consensus       405 Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~  484 (626)
                      .+.++++++|+.|+..+++++.    +.|.+           ..++.++|.|++++|+|.+|+.+++++++..|++..+.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~----~~p~~-----------~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~   66 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALE----LDPDD-----------PELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR   66 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHH----hCccc-----------chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence            3568899999999999999999    67766           45899999999999999999999999999999998877


Q ss_pred             HHHHH
Q 006908          485 YRRGM  489 (626)
Q Consensus       485 ~~~g~  489 (626)
                      .-++.
T Consensus        67 ~~~a~   71 (73)
T PF13371_consen   67 ALRAM   71 (73)
T ss_pred             HHHHh
Confidence            66554

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.16  E-value=2.5e-05  Score=76.18  Aligned_cols=120  Identities=18%  Similarity=0.250  Sum_probs=91.1

Q ss_pred             hhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 006908          404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG  483 (626)
Q Consensus       404 ~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka  483 (626)
                      .++.++..|+-+.++....+++.    ..|.+.           .++.-.+..++..|+|..|+..+.++..++|+++++
T Consensus        72 ~a~a~~~~G~a~~~l~~~~~~~~----~~~~d~-----------~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~  136 (257)
T COG5010          72 LATALYLRGDADSSLAVLQKSAI----AYPKDR-----------ELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEA  136 (257)
T ss_pred             HHHHHHhcccccchHHHHhhhhc----cCcccH-----------HHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhh
Confidence            44555555555555555555444    244442           244448889999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006908          484 LYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQ  539 (626)
Q Consensus       484 ~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~  539 (626)
                      |.-+|.+|.++|++++|...|.+|+++.|++ +.+..+|.-..-.....+..++-.
T Consensus       137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~-p~~~nNlgms~~L~gd~~~A~~ll  191 (257)
T COG5010         137 WNLLGAALDQLGRFDEARRAYRQALELAPNE-PSIANNLGMSLLLRGDLEDAETLL  191 (257)
T ss_pred             hhHHHHHHHHccChhHHHHHHHHHHHhccCC-chhhhhHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999999999999987 677888776655544444444433

>PRK01490 tig trigger factor; Provisional

Probab=98.16  E-value=9.1e-06  Score=88.66  Aligned_cols=86  Identities=17%  Similarity=0.141  Sum_probs=71.5

Q ss_pred             CCCCCCeEEEEEEEEeCCCcEEEecCCCccEEEEcCCCCccchHHHhhccCCCCcEEEEEEeCCccCCCCCCCCCCCcce
Q 006908          168 TPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEE  247 (626)
Q Consensus       168 ~~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~ip~~~~  247 (626)
                      .++.||.|+++|++.. +|..|+++ ...++.|.+|.+.+++||+++|.||++|+++.|.++....|+...    -++.+
T Consensus       157 ~~~~gD~V~vd~~~~~-~g~~~~~~-~~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~----lagk~  230 (435)
T PRK01490        157 PAENGDRVTIDFVGSI-DGEEFEGG-KAEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAED----LAGKE  230 (435)
T ss_pred             cCCCCCEEEEEEEEEE-CCEECcCC-CCCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCcccccccc----CCCCe
Confidence            4789999999999965 88877754 457899999999999999999999999999999987655554321    15789


Q ss_pred             EEEEEEEeeEEe
Q 006908          248 VHFEVELVHLIQ  259 (626)
Q Consensus       248 l~~~v~l~~~~~  259 (626)
                      +.|.|+|+++.+
T Consensus       231 ~~f~v~v~~V~~  242 (435)
T PRK01490        231 ATFKVTVKEVKE  242 (435)
T ss_pred             EEEEEEEEEecc
Confidence            999999999853

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.16  E-value=2e-05  Score=88.62  Aligned_cols=119  Identities=16%  Similarity=0.189  Sum_probs=102.5

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +..+.-.+|.+|-.|+|..+..++.-|+..-.            ...+.+..++++|.||..+|+|++|..+|.+++..+
T Consensus       270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~------------~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~  337 (1018)
T KOG2002|consen  270 PVALNHLANHFYFKKDYERVWHLAEHAIKNTE------------NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD  337 (1018)
T ss_pred             cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh------------hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC
Confidence            34566788999999999999999999987321            123455678999999999999999999999999999


Q ss_pred             CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 006908          478 PAH-VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (626)
Q Consensus       478 p~~-~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~  529 (626)
                      +++ .-+++.+|+.++..|+++.|+.+|++.++..|++ ......|..+....
T Consensus       338 ~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~-~etm~iLG~Lya~~  389 (1018)
T KOG2002|consen  338 NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNN-YETMKILGCLYAHS  389 (1018)
T ss_pred             CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcch-HHHHHHHHhHHHhh
Confidence            998 8899999999999999999999999999999998 67777777776555

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.15  E-value=5.7e-06  Score=78.00  Aligned_cols=132  Identities=21%  Similarity=0.242  Sum_probs=109.8

Q ss_pred             CCCCcceeeeeeecccccCCCCCCCChhhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhh
Q 006908          365 VPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVG  444 (626)
Q Consensus       365 ip~~~~l~~~vel~~~~~~~~~~~~~~~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~  444 (626)
                      +|-..++.-+|-+..+...-....++.++   .|.-+.++|+.+=.-|-+..|..-|+++|.    +.|.-         
T Consensus        35 ~~~qp~lqqEV~iarlsqlL~~~~l~~ee---RA~l~fERGvlYDSlGL~~LAR~DftQaLa----i~P~m---------   98 (297)
T COG4785          35 VPLQPTLQQEVILARMSQILASRALTDEE---RAQLLFERGVLYDSLGLRALARNDFSQALA----IRPDM---------   98 (297)
T ss_pred             ccCCccHHHHHHHHHHHHHHHhccCChHH---HHHHHHHhcchhhhhhHHHHHhhhhhhhhh----cCCCc---------
Confidence            45454555555555444322223455554   588899999999999999999999999999    66654         


Q ss_pred             hhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          445 KRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       445 ~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                        ..+++-+|.-+...|+|+.|.+.++.++++||.+--|+.+||.++.--|+|.-|.++|.+-..-||++
T Consensus        99 --~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~D  166 (297)
T COG4785          99 --PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPND  166 (297)
T ss_pred             --HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCC
Confidence              45888899999999999999999999999999999999999999999999999999999999999986

>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

Probab=98.11  E-value=7.7e-06  Score=87.90  Aligned_cols=83  Identities=19%  Similarity=0.232  Sum_probs=67.8

Q ss_pred             CCCCCeEEEEEEEEeCCCcEEEecCCCccEEEEcCCCCccchHHHhhccCCCCcEEEEEEe--CCccCCCCCCCCCCCcc
Q 006908          169 PRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT--SQYLTPSPLMPVVEGCE  246 (626)
Q Consensus       169 ~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~--~~~~~g~~~~~~ip~~~  246 (626)
                      ++.||.|+|+|.| ..||..|... ....+.|.+|+|++||||+.+|.||+.|+...|.|.  .+|.-+..      .++
T Consensus       158 a~~gD~v~IDf~g-~iDg~~fegg-~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L------aGK  229 (441)
T COG0544         158 AENGDRVTIDFEG-SVDGEEFEGG-KAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL------AGK  229 (441)
T ss_pred             cccCCEEEEEEEE-EEcCeeccCc-cccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh------CCC
Confidence            8899999999999 6888877743 347799999999999999999999999999886544  44443322      568


Q ss_pred             eEEEEEEEeeEEe
Q 006908          247 EVHFEVELVHLIQ  259 (626)
Q Consensus       247 ~l~~~v~l~~~~~  259 (626)
                      +..|.|+|+.+..
T Consensus       230 ~a~F~V~vkeVk~  242 (441)
T COG0544         230 EATFKVKVKEVKK  242 (441)
T ss_pred             ceEEEEEEEEEee
Confidence            8999999999854

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.08  E-value=3e-05  Score=87.22  Aligned_cols=132  Identities=21%  Similarity=0.305  Sum_probs=110.5

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      .+.+++.|..+|..|++..|...|.+|+..+....  +.++.   .....+..+|+|.|+-.++++..|...|..++...
T Consensus       452 ~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~--n~de~---~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh  526 (1018)
T KOG2002|consen  452 PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVA--NKDEG---KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH  526 (1018)
T ss_pred             HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhc--Ccccc---ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence            55788999999999999999999999998643211  11111   23346789999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006908          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESK  535 (626)
Q Consensus       478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~  535 (626)
                      |....||.|+|......+...+|...++.++.+|..| +.++..+..+..+..+....
T Consensus       527 p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~n-p~arsl~G~~~l~k~~~~~a  583 (1018)
T KOG2002|consen  527 PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSN-PNARSLLGNLHLKKSEWKPA  583 (1018)
T ss_pred             chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCC-cHHHHHHHHHHHhhhhhccc
Confidence            9999999999977788899999999999999999987 88999999877666654433

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.08  E-value=3.5e-05  Score=83.97  Aligned_cols=106  Identities=18%  Similarity=0.223  Sum_probs=88.1

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      ...+...|..++.+|+|+.|+..|+.|++.+.......       +........++|..|..+++|.+|+..|.+||.+-
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~-------hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~  271 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLK-------HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR  271 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCcc-------CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            34444589999999999999999999999764433322       33445566679999999999999999999999763


Q ss_pred             --------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908          478 --------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (626)
Q Consensus       478 --------p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l  510 (626)
                              |.-+-++.++|.+|...|+|++|..++++|+++
T Consensus       272 e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I  312 (508)
T KOG1840|consen  272 EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI  312 (508)
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence                    445778999999999999999999999999988

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=98.08  E-value=5.7e-05  Score=64.43  Aligned_cols=107  Identities=20%  Similarity=0.334  Sum_probs=81.9

Q ss_pred             HHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Q 006908          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN---  477 (626)
Q Consensus       401 ~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d---  477 (626)
                      ....|...++.|-|++|...|++|+..-..+.+...-+.   ...-+-||.-|+.++.++|+|++++....++|.+-   
T Consensus        12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh---~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR   88 (144)
T PF12968_consen   12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDH---DGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR   88 (144)
T ss_dssp             HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---H---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhccc---ccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence            345677788889999999999999997666555432211   22335689999999999999999999999999652   


Q ss_pred             ----C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908          478 ----P----AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (626)
Q Consensus       478 ----p----~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l  510 (626)
                          .    .+..+.|++|.++..+|+.++|+..|++|-++
T Consensus        89 GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   89 GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             --TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence                2    24778999999999999999999999998765

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.07  E-value=1.5e-05  Score=87.08  Aligned_cols=115  Identities=15%  Similarity=0.191  Sum_probs=96.3

Q ss_pred             HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006908          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (626)
Q Consensus       400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~  479 (626)
                      +.+-.|+..+.+++|.+|.++++.++.    ++|           +....|+++|.|.++++++..|..+|.+.+.++|+
T Consensus       487 A~r~~~~~~~~~~~fs~~~~hle~sl~----~np-----------lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd  551 (777)
T KOG1128|consen  487 AQRSLALLILSNKDFSEADKHLERSLE----INP-----------LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD  551 (777)
T ss_pred             HHHhhccccccchhHHHHHHHHHHHhh----cCc-----------cchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence            444556667788999999999999998    444           34568999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006908          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (626)
Q Consensus       480 ~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~  530 (626)
                      +..+|.+++.+|..+++-.+|...++.|++.+-.| -.++.+...+-....
T Consensus       552 ~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~-w~iWENymlvsvdvg  601 (777)
T KOG1128|consen  552 NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH-WQIWENYMLVSVDVG  601 (777)
T ss_pred             chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC-Ceeeechhhhhhhcc
Confidence            99999999999999999999999999999998665 445555555444433

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.07  E-value=4.4e-05  Score=76.28  Aligned_cols=140  Identities=14%  Similarity=0.190  Sum_probs=102.1

Q ss_pred             CChhhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHH----------hcccCCCCChhHHHH---------------Hh
Q 006908          389 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLR----------DFNHVNPQDDEEGKV---------------FV  443 (626)
Q Consensus       389 ~~~~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~----------~l~~~~p~~~ee~~~---------------~~  443 (626)
                      ++++++   ...+.+.|..|...|-|+.|...|.....          .|-.+-- .+.||+.               ..
T Consensus       101 lT~~qr---~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ-~treW~KAId~A~~L~k~~~q~~~  176 (389)
T COG2956         101 LTFEQR---LLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQ-ATREWEKAIDVAERLVKLGGQTYR  176 (389)
T ss_pred             CchHHH---HHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHcCCccch
Confidence            444443   44556677777777777777777765433          1100000 0011111               12


Q ss_pred             hhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 006908          444 GKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS  523 (626)
Q Consensus       444 ~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~  523 (626)
                      -..+.+|+-+|..+.-..+++.|+....+|++.||+++.|-.-+|.+++..|+|+.|++.++.+++.||+.-+.+...|.
T Consensus       177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~  256 (389)
T COG2956         177 VEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLY  256 (389)
T ss_pred             hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence            23467899999999999999999999999999999999999999999999999999999999999999987666776776


Q ss_pred             HHHHHHHHH
Q 006908          524 KLKKQRQEV  532 (626)
Q Consensus       524 ~l~~~~~~~  532 (626)
                      .+...+.+.
T Consensus       257 ~~Y~~lg~~  265 (389)
T COG2956         257 ECYAQLGKP  265 (389)
T ss_pred             HHHHHhCCH
Confidence            666555543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.04  E-value=6.1e-05  Score=87.44  Aligned_cols=147  Identities=10%  Similarity=0.008  Sum_probs=104.8

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhH-----------------HHHHh------hhhhHHHHHHH
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE-----------------GKVFV------GKRNLLHLNVA  454 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee-----------------~~~~~------~~~~~~~~Nla  454 (626)
                      +.....++-..+++|+|..|+..|++++.    ..|.+...                 ...+.      +.....+..+|
T Consensus        34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~----~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA  109 (822)
T PRK14574         34 ADTQYDSLIIRARAGDTAPVLDYLQEESK----AGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAA  109 (822)
T ss_pred             hhHHHHHHHHHHhCCCHHHHHHHHHHHHh----hCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHH
Confidence            44666788888999999999999999998    44444210                 00011      11123344457


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 006908          455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVES  534 (626)
Q Consensus       455 ~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~  534 (626)
                      .++..+|+|.+|+..|+++++.+|+++.+++-++.++..++++++|+..+++++.++|.+ ... ..+..+........+
T Consensus       110 ~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~-~~~-l~layL~~~~~~~~~  187 (822)
T PRK14574        110 RAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTV-QNY-MTLSYLNRATDRNYD  187 (822)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcch-HHH-HHHHHHHHhcchHHH
Confidence            799999999999999999999999999999999999999999999999999999999986 333 333334322222222


Q ss_pred             HHHHHHHccccCCCCCc
Q 006908          535 KARKQFKGLFDKKPGEI  551 (626)
Q Consensus       535 ~~~~~~~~~~~~~~~~~  551 (626)
                       .-..+++++...+...
T Consensus       188 -AL~~~ekll~~~P~n~  203 (822)
T PRK14574        188 -ALQASSEAVRLAPTSE  203 (822)
T ss_pred             -HHHHHHHHHHhCCCCH
Confidence             4556777777665443

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.04  E-value=5.1e-05  Score=80.17  Aligned_cols=71  Identities=28%  Similarity=0.374  Sum_probs=62.2

Q ss_pred             HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (626)
Q Consensus       395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL  474 (626)
                      ...+..+.+.|+.|++.|+|++|+..|++||.    ++|++.+        ...+|+|+|.||.++|++++|+.++.+||
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe----L~Pd~ae--------A~~A~yNLAcaya~LGr~dEAla~LrrAL  139 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE----LNPNPDE--------AQAAYYNKACCHAYREEGKKAADCLRTAL  139 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCchH--------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            44677888999999999999999999999999    7887632        01469999999999999999999999999


Q ss_pred             HhC
Q 006908          475 DAN  477 (626)
Q Consensus       475 ~~d  477 (626)
                      ++.
T Consensus       140 els  142 (453)
T PLN03098        140 RDY  142 (453)
T ss_pred             Hhc
Confidence            983

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.02  E-value=7.6e-06  Score=54.72  Aligned_cols=33  Identities=30%  Similarity=0.632  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908          481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (626)
Q Consensus       481 ~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~  513 (626)
                      +++|+++|.++..++++++|+.+|++|++++|+
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            456777777777777777777777777777775

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.01  E-value=0.0001  Score=77.71  Aligned_cols=117  Identities=15%  Similarity=0.160  Sum_probs=90.3

Q ss_pred             HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006908          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (626)
Q Consensus       400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~  479 (626)
                      ...-.+...|..|+++.|...++..+.    ..|+|.           .++.-++..+++.++..+|++.+.+++.++|+
T Consensus       308 a~YG~A~~~~~~~~~d~A~~~l~~L~~----~~P~N~-----------~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~  372 (484)
T COG4783         308 AQYGRALQTYLAGQYDEALKLLQPLIA----AQPDNP-----------YYLELAGDILLEANKAKEAIERLKKALALDPN  372 (484)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHH----hCCCCH-----------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Confidence            334455556666666666666666555    566662           34455788888999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 006908          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEV  532 (626)
Q Consensus       480 ~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~  532 (626)
                      ..-..+++|++|++.|++.+|+..++..+.-+|++ +..+..|......+...
T Consensus       373 ~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d-p~~w~~LAqay~~~g~~  424 (484)
T COG4783         373 SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED-PNGWDLLAQAYAELGNR  424 (484)
T ss_pred             ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHhCch
Confidence            88888999999999999999999999999999987 78888888876655543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=97.98  E-value=0.00011  Score=77.77  Aligned_cols=111  Identities=22%  Similarity=0.162  Sum_probs=89.6

Q ss_pred             HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHH--------------------HH------hhhhhHHHHH
Q 006908          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGK--------------------VF------VGKRNLLHLN  452 (626)
Q Consensus       399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~--------------------~~------~~~~~~~~~N  452 (626)
                      +....+|..++..|++++|...+++++.    ..|.+..-..                    .+      ......++.+
T Consensus        44 e~~~~~a~~~~~~g~~~~A~~~~~~~l~----~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  119 (355)
T cd05804          44 ERAHVEALSAWIAGDLPKALALLEQLLD----DYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGM  119 (355)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHH
Confidence            3344678889999999999999999988    3444331100                    00      0111235568


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908          453 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (626)
Q Consensus       453 la~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~  513 (626)
                      +|.++..+|++.+|+..|.++++++|+++.++..+|.++...|++++|+..|++++.+.|.
T Consensus       120 ~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~  180 (355)
T cd05804         120 LAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC  180 (355)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence            8999999999999999999999999999999999999999999999999999999999875

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.95  E-value=0.0004  Score=63.53  Aligned_cols=112  Identities=19%  Similarity=0.131  Sum_probs=85.6

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccC-CCC------ChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHH
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV-NPQ------DDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEAC  470 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~-~p~------~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~  470 (626)
                      ...+...|......++...++..|.+++..+..- .+.      -......+......+...++.++...|+|..|+..|
T Consensus         6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~   85 (146)
T PF03704_consen    6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL   85 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence            3444556666677788999999999999865421 111      112334466677788889999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006908          471 NKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK  509 (626)
Q Consensus       471 ~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~  509 (626)
                      .+++.++|-+-.+|..+-.+|..+|++.+|++.|+++..
T Consensus        86 ~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   86 QRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.93  E-value=0.00011  Score=77.33  Aligned_cols=107  Identities=27%  Similarity=0.316  Sum_probs=90.7

Q ss_pred             hhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 006908          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK  482 (626)
Q Consensus       403 ~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~k  482 (626)
                      ..+..+++.+++.+|++.+++++.    +.|..           ..+..|+|.++++.|++.+|+...+..+.-+|+++.
T Consensus       345 ~~~~i~~~~nk~~~A~e~~~kal~----l~P~~-----------~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~  409 (484)
T COG4783         345 LAGDILLEANKAKEAIERLKKALA----LDPNS-----------PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPN  409 (484)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHh----cCCCc-----------cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch
Confidence            467788899999999999999999    56654           458899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006908          483 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (626)
Q Consensus       483 a~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l  525 (626)
                      .|..+|++|..+|+-.+|...+-.++.+.-.- ..+...+.+.
T Consensus       410 ~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~-~~A~~~l~~A  451 (484)
T COG4783         410 GWDLLAQAYAELGNRAEALLARAEGYALAGRL-EQAIIFLMRA  451 (484)
T ss_pred             HHHHHHHHHHHhCchHHHHHHHHHHHHhCCCH-HHHHHHHHHH
Confidence            99999999999999988888888888877654 3344444433

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.92  E-value=1e-05  Score=54.20  Aligned_cols=34  Identities=24%  Similarity=0.457  Sum_probs=31.7

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006908          469 ACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQR  502 (626)
Q Consensus       469 ~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~  502 (626)
                      +|++||+++|+|+.+|+++|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            3789999999999999999999999999999973

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.88  E-value=0.00019  Score=79.43  Aligned_cols=66  Identities=17%  Similarity=0.145  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       448 ~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      .+|.-+|..+...|++++|...+++|+.++| ++.+|+.+|.++...|++++|++.|++|+.++|.+
T Consensus       421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~  486 (517)
T PRK10153        421 RIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE  486 (517)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence            4577788888899999999999999999999 68999999999999999999999999999999986

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=97.87  E-value=0.00011  Score=77.72  Aligned_cols=99  Identities=17%  Similarity=0.242  Sum_probs=85.8

Q ss_pred             HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006908          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (626)
Q Consensus       399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp  478 (626)
                      ..+...|..+...|++.+|...|++++.    +.|.+           ..++.++|.+++.+|++++|+..+.+++...|
T Consensus       115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~----~~p~~-----------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~  179 (355)
T cd05804         115 YLLGMLAFGLEEAGQYDRAEEAARRALE----LNPDD-----------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD  179 (355)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCC-----------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence            3444677788999999999999999999    66765           45788999999999999999999999999887


Q ss_pred             CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 006908          479 AH----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK  512 (626)
Q Consensus       479 ~~----~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P  512 (626)
                      .+    ...++.+|.++..+|++++|+..|++++...|
T Consensus       180 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         180 CSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             CCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            43    24577899999999999999999999987776

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=97.86  E-value=5.8e-05  Score=77.25  Aligned_cols=123  Identities=19%  Similarity=0.280  Sum_probs=88.3

Q ss_pred             HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006908          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (626)
Q Consensus       399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp  478 (626)
                      ..+......+++.++++++...+.++... .. .+.+           ..++..+|.++.+.|++++|+.++.+||+++|
T Consensus       111 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~-~~-~~~~-----------~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P  177 (280)
T PF13429_consen  111 RYLLSALQLYYRLGDYDEAEELLEKLEEL-PA-APDS-----------ARFWLALAEIYEQLGDPDKALRDYRKALELDP  177 (280)
T ss_dssp             -------H-HHHTT-HHHHHHHHHHHHH--T----T------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-T
T ss_pred             chhhHHHHHHHHHhHHHHHHHHHHHHHhc-cC-CCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            33444555677888999999999987751 11 1222           45788899999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006908          479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESK  535 (626)
Q Consensus       479 ~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~  535 (626)
                      ++..++..++.++...|++++|...+....+..|++ +.+...+..+...+.+..+.
T Consensus       178 ~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~-~~~~~~la~~~~~lg~~~~A  233 (280)
T PF13429_consen  178 DDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDD-PDLWDALAAAYLQLGRYEEA  233 (280)
T ss_dssp             T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS-CCHCHHHHHHHHHHT-HHHH
T ss_pred             CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH-HHHHHHHHHHhccccccccc
Confidence            999999999999999999999999988888887765 45666777766666554443

>PRK11906 transcriptional regulator; Provisional

Probab=97.86  E-value=0.00019  Score=76.07  Aligned_cols=100  Identities=14%  Similarity=0.064  Sum_probs=75.8

Q ss_pred             cHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHH
Q 006908          413 KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL---------GECRKSIEACNKVLDANPAHVKG  483 (626)
Q Consensus       413 ~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl---------~~~~~A~~~~~~aL~~dp~~~ka  483 (626)
                      ....|+.+|.+|+..- .+.|..           +.+|.-+|.||+.+         .+-.+|...+.+|+++||.++.|
T Consensus       273 ~~~~Al~lf~ra~~~~-~ldp~~-----------a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a  340 (458)
T PRK11906        273 SIYRAMTIFDRLQNKS-DIQTLK-----------TECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKI  340 (458)
T ss_pred             HHHHHHHHHHHHhhcc-cCCccc-----------HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHH
Confidence            4677888999999310 044543           56777788887765         13567888888899999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006908          484 LYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (626)
Q Consensus       484 ~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l  525 (626)
                      ++.+|.++...++++.|...|++|+.++|+. ..+......+
T Consensus       341 ~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~-A~~~~~~~~~  381 (458)
T PRK11906        341 LAIMGLITGLSGQAKVSHILFEQAKIHSTDI-ASLYYYRALV  381 (458)
T ss_pred             HHHHHHHHHhhcchhhHHHHHHHHhhcCCcc-HHHHHHHHHH
Confidence            9999999999999999999999999999986 5566555553

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.85  E-value=3.2e-05  Score=51.53  Aligned_cols=34  Identities=35%  Similarity=0.612  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       481 ~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      +++|+++|.+++.+|+|++|+.+|++|++++|+|
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            4678888888888888888888888888888864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.81  E-value=0.001  Score=60.79  Aligned_cols=121  Identities=17%  Similarity=0.208  Sum_probs=89.6

Q ss_pred             HHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006908          394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV  473 (626)
Q Consensus       394 ~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~a  473 (626)
                      ....+..........+..+++..+...+.+.+.    ..|..        .......+.+|.+++..|+|++|+..+..+
T Consensus         7 ~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~----~~~~s--------~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~   74 (145)
T PF09976_consen    7 QAEQASALYEQALQALQAGDPAKAEAAAEQLAK----DYPSS--------PYAALAALQLAKAAYEQGDYDEAKAALEKA   74 (145)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HCCCC--------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            445666777777777788899988888888777    33332        123457788999999999999999999999


Q ss_pred             HHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006908          474 LDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (626)
Q Consensus       474 L~~dp~~---~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~  528 (626)
                      +...|+.   ..+.+|+|.+++.+|+|++|+..++...  ++...+.+...+..+...
T Consensus        75 ~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~--~~~~~~~~~~~~Gdi~~~  130 (145)
T PF09976_consen   75 LANAPDPELKPLARLRLARILLQQGQYDEALATLQQIP--DEAFKALAAELLGDIYLA  130 (145)
T ss_pred             HhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc--CcchHHHHHHHHHHHHHH
Confidence            9987654   4689999999999999999999997632  222223444444444433

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.80  E-value=0.00031  Score=72.07  Aligned_cols=110  Identities=18%  Similarity=0.223  Sum_probs=86.5

Q ss_pred             HHHHHHHhhhchhhcc-ccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908          396 DEAEKIRVTGNRLFKE-GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (626)
Q Consensus       396 ~~a~~~k~~Gn~~f~~-g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL  474 (626)
                      ..|..+...|..+... +++++|+.+|++|+.++....         .......++.++|.++.++++|.+|+..|.++.
T Consensus       112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~---------~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~  182 (282)
T PF14938_consen  112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG---------SPHSAAECLLKAADLYARLGRYEEAIEIYEEVA  182 (282)
T ss_dssp             HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC---------ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            3577788888888888 999999999999999765432         122345688999999999999999999999998


Q ss_pred             HhCCC------CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          475 DANPA------HVK-GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       475 ~~dp~------~~k-a~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      ...-+      +++ .+++.+.|++..|++-.|...|++....+|..
T Consensus       183 ~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F  229 (282)
T PF14938_consen  183 KKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF  229 (282)
T ss_dssp             HTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred             HHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            75321      244 45688889999999999999999999999965

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=97.80  E-value=0.00043  Score=77.65  Aligned_cols=120  Identities=17%  Similarity=0.242  Sum_probs=90.5

Q ss_pred             HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Q 006908          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP-  478 (626)
Q Consensus       400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp-  478 (626)
                      -++..+...-+.|++.+|+-+|.+||.    ..|.+           ...+.+++..|.++|++..|...+.+++.++| 
T Consensus       209 ~W~~ladls~~~~~i~qA~~cy~rAI~----~~p~n-----------~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~  273 (895)
T KOG2076|consen  209 LWKRLADLSEQLGNINQARYCYSRAIQ----ANPSN-----------WELIYERSSLYQKTGDLKRAMETFLQLLQLDPP  273 (895)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHh----cCCcc-----------hHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc
Confidence            456677777788999999999999999    66665           56889999999999999999999999999999 


Q ss_pred             ---CCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 006908          479 ---AHVKGL-YRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKA  536 (626)
Q Consensus       479 ---~~~ka~-~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~~  536 (626)
                         ....++ ++.++.+...++-+.|++.+..++...-+  .....-+..+....-..++-.
T Consensus       274 ~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~--~~~~ed~ni~ael~l~~~q~d  333 (895)
T KOG2076|consen  274 VDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKD--EASLEDLNILAELFLKNKQSD  333 (895)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccc--cccccHHHHHHHHHHHhHHHH
Confidence               223444 45589999999999999999999984322  334444444444333333333

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=97.80  E-value=0.00035  Score=72.01  Aligned_cols=133  Identities=11%  Similarity=0.222  Sum_probs=99.1

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccC----CCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV----NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK  472 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~----~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~  472 (626)
                      +.......|..+|++++|..|+-.|..||+++...    .|...+ ...+.....-+.-.+..||+++++.+-|+.+..+
T Consensus       175 wl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~-~~di~~vaSfIetklv~CYL~~rkpdlALnh~hr  253 (569)
T PF15015_consen  175 WLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKAS-AEDISSVASFIETKLVTCYLRMRKPDLALNHSHR  253 (569)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCC-hhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhh
Confidence            44445568889999999999999999999976532    121111 1112333344566799999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHH
Q 006908          473 VLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV---DKSSEPDATAALSKLKKQRQ  530 (626)
Q Consensus       473 aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l---~P~~~~~~~~~l~~l~~~~~  530 (626)
                      .|.++|.+..-|+|+|.|+..|.+|.+|-+.+--|.-+   +..+.+.+.+.+....+..-
T Consensus       254 sI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g~~~q~~S~lIklyWqami  314 (569)
T PF15015_consen  254 SINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSGGSEQRISKLIKLYWQAMI  314 (569)
T ss_pred             hhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999887776544   44344555555555544433

>PRK14574 hmsH outer membrane protein; Provisional

Probab=97.80  E-value=0.0002  Score=83.21  Aligned_cols=107  Identities=10%  Similarity=0.108  Sum_probs=83.7

Q ss_pred             hchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 006908          405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGL  484 (626)
Q Consensus       405 Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~  484 (626)
                      |..+...|+|++|+..|++++.    ..|.++           .++.-++.++..++++.+|+..+.+++..+|.+... 
T Consensus       109 A~ly~~~gdyd~Aiely~kaL~----~dP~n~-----------~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-  172 (822)
T PRK14574        109 ARAYRNEKRWDQALALWQSSLK----KDPTNP-----------DLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-  172 (822)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHh----hCCCCH-----------HHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-
Confidence            4456677999999999999999    788773           355678999999999999999999999999985444 


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006908          485 YRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (626)
Q Consensus       485 ~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~  528 (626)
                      ..++..+..++++.+|++.|+++++++|++ .++...+-.+-..
T Consensus       173 l~layL~~~~~~~~~AL~~~ekll~~~P~n-~e~~~~~~~~l~~  215 (822)
T PRK14574        173 MTLSYLNRATDRNYDALQASSEAVRLAPTS-EEVLKNHLEILQR  215 (822)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Confidence            444555555778877999999999999998 4444444444333

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.77  E-value=3.9e-05  Score=51.21  Aligned_cols=33  Identities=18%  Similarity=0.430  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 006908          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (626)
Q Consensus       448 ~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~  480 (626)
                      .+|+|+|.||+.+++|.+|+.+|++||+++|++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            479999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.76  E-value=0.00033  Score=80.88  Aligned_cols=111  Identities=16%  Similarity=0.123  Sum_probs=69.7

Q ss_pred             HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006908          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (626)
Q Consensus       399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp  478 (626)
                      ..+-...+.+...+++++|+..+..++.    .+|..           ..+|+-+|..++..+++..|...  .++.+-+
T Consensus        32 ~a~~~Li~~~~~~~~~deai~i~~~~l~----~~P~~-----------i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~   94 (906)
T PRK14720         32 KELDDLIDAYKSENLTDEAKDICEEHLK----EHKKS-----------ISALYISGILSLSRRPLNDSNLL--NLIDSFS   94 (906)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH----hCCcc-----------eehHHHHHHHHHhhcchhhhhhh--hhhhhcc
Confidence            3444555666677888888888888887    44443           34555556666665555554443  4443333


Q ss_pred             CCH-------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006908          479 AHV-------------------KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (626)
Q Consensus       479 ~~~-------------------ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~  527 (626)
                      .+.                   .|+|.+|.||-++|++++|.+.|+++|+++|+| +.+.++++-...
T Consensus        95 ~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n-~~aLNn~AY~~a  161 (906)
T PRK14720         95 QNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDN-PEIVKKLATSYE  161 (906)
T ss_pred             cccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc-HHHHHHHHHHHH
Confidence            333                   677777777777777777777777777777776 455555554433

>TIGR00540 hemY_coli hemY protein

Probab=97.73  E-value=0.0011  Score=71.68  Aligned_cols=114  Identities=18%  Similarity=0.202  Sum_probs=65.3

Q ss_pred             HHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCCh----------------hHH-HHHh------hh-hhHH
Q 006908          394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDD----------------EEG-KVFV------GK-RNLL  449 (626)
Q Consensus       394 ~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~----------------ee~-~~~~------~~-~~~~  449 (626)
                      +...+.....+|-..+..|+|..|.+...++.+    ..|...                +.. ..+.      +. ...+
T Consensus        80 ~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~----~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~  155 (409)
T TIGR00540        80 KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNAD----HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILV  155 (409)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhh----cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHH
Confidence            455677778888888899999999999888877    333220                000 0000      00 0012


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006908          450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (626)
Q Consensus       450 ~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~  511 (626)
                      ...++..++..++++.|+..++++++..|+++.+++.++.++...|+|++|+..+.+.++..
T Consensus       156 ~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~  217 (409)
T TIGR00540       156 EIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG  217 (409)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence            22335555555666666666666666666666666666666666666666666555555543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.73  E-value=6.7e-05  Score=61.69  Aligned_cols=76  Identities=25%  Similarity=0.410  Sum_probs=61.9

Q ss_pred             cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 006908          460 LGECRKSIEACNKVLDANPA--HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKAR  537 (626)
Q Consensus       460 l~~~~~A~~~~~~aL~~dp~--~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~~~  537 (626)
                      .++|+.|+..++++++.+|.  +...++++|.||+.+|+|++|+..+++ ++.+|.+ ..+...+..+.-.+.+.++..+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~-~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN-PDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHHhCCHHHHHH
Confidence            57899999999999999995  567888999999999999999999999 8888875 5677777777666666655543

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.73  E-value=9.5e-05  Score=82.07  Aligned_cols=115  Identities=28%  Similarity=0.480  Sum_probs=102.1

Q ss_pred             CChhhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHc--CCHHHH
Q 006908          389 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL--GECRKS  466 (626)
Q Consensus       389 ~~~~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl--~~~~~A  466 (626)
                      .+....+..+..++.+||.+|+.++|..|...|..++.+++.-++           ..+.++.|++.|++.+  ++|..+
T Consensus        44 ~di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~-----------~~a~~~~~~~s~~m~~~l~~~~~~  112 (748)
T KOG4151|consen   44 EDIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHH-----------VVATLRSNQASCYMQLGLGEYPKA  112 (748)
T ss_pred             cchHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccch-----------hhhhHHHHHHHHHhhcCccchhhh
Confidence            355677889999999999999999999999999999995443222           3467899999998876  589999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          467 IEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       467 ~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      +..|.-|+...|...+++++|+.+|..++.++-|++++.-....+|.+
T Consensus       113 ~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~  160 (748)
T KOG4151|consen  113 IPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSN  160 (748)
T ss_pred             cCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            999999999999999999999999999999999999999999999997

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.71  E-value=0.00031  Score=70.82  Aligned_cols=100  Identities=19%  Similarity=0.235  Sum_probs=75.4

Q ss_pred             HHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHHHH
Q 006908          448 LLHLNVAACL-LKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE--PDATAA  521 (626)
Q Consensus       448 ~~~~Nla~~~-~kl~~~~~A~~~~~~aL~~dp~~---~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~--~~~~~~  521 (626)
                      ...++.|.++ ++.++|.+|+..|...+...|++   +.|+|++|.+|+..|+|++|+..|+++++..|++.  .++...
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            5677888887 66899999999999999999988   58999999999999999999999999999999863  334444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHccccCCC
Q 006908          522 LSKLKKQRQEVESKARKQFKGLFDKKP  548 (626)
Q Consensus       522 l~~l~~~~~~~~~~~~~~~~~~~~~~~  548 (626)
                      +..+...+.. ..+.+..|+......+
T Consensus       223 lg~~~~~~g~-~~~A~~~~~~vi~~yP  248 (263)
T PRK10803        223 VGVIMQDKGD-TAKAKAVYQQVIKKYP  248 (263)
T ss_pred             HHHHHHHcCC-HHHHHHHHHHHHHHCc
Confidence            4444433332 2333445555544433

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=0.00071  Score=69.76  Aligned_cols=121  Identities=12%  Similarity=0.105  Sum_probs=81.9

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCH--------------
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC--------------  463 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~--------------  463 (626)
                      ...+..+|+.+.+.++..+|+-.|+.|..    +.|.+           ..+|-.+-.||+-.+.+              
T Consensus       334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~----Lap~r-----------L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~  398 (564)
T KOG1174|consen  334 HEALILKGRLLIALERHTQAVIAFRTAQM----LAPYR-----------LEIYRGLFHSYLAQKRFKEANALANWTIRLF  398 (564)
T ss_pred             chHHHhccHHHHhccchHHHHHHHHHHHh----cchhh-----------HHHHHHHHHHHHhhchHHHHHHHHHHHHHHh
Confidence            45677889999999999999999999998    44433           23444444444444444              


Q ss_pred             ----------------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 006908          464 ----------------------RKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAA  521 (626)
Q Consensus       464 ----------------------~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~  521 (626)
                                            ++|...++++|.++|...+|-..+|..+..-|.+.++++.++++|...|+.  .....
T Consensus       399 ~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~--~LH~~  476 (564)
T KOG1174|consen  399 QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV--NLHNH  476 (564)
T ss_pred             hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc--HHHHH
Confidence                                  455555566666667777777777777777888888888888888877764  45666


Q ss_pred             HHHHHHHHHHHHHH
Q 006908          522 LSKLKKQRQEVESK  535 (626)
Q Consensus       522 l~~l~~~~~~~~~~  535 (626)
                      |..+-....+.++.
T Consensus       477 Lgd~~~A~Ne~Q~a  490 (564)
T KOG1174|consen  477 LGDIMRAQNEPQKA  490 (564)
T ss_pred             HHHHHHHhhhHHHH
Confidence            66655544444433

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.66  E-value=0.0014  Score=64.27  Aligned_cols=127  Identities=21%  Similarity=0.283  Sum_probs=98.2

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +..|-++|...++.|+|.+|+..|++...    ..|.++.        .-.+.+.++.+++|.++|..|+...++-+.+.
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~----~~p~s~~--------~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly  101 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDS----RHPFSPY--------SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY  101 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCcc--------cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence            56677888999999999999999999887    5555432        23467789999999999999999999999999


Q ss_pred             CCCH---HHHHHHHHHHHHcC--------CHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHHHHHHHHH
Q 006908          478 PAHV---KGLYRRGMAYMALG--------EFEEAQRDFEMMMKVDKSSE--PDATAALSKLKKQRQEVESKA  536 (626)
Q Consensus       478 p~~~---ka~~~~g~a~~~lg--------~~~eA~~~~~kAl~l~P~~~--~~~~~~l~~l~~~~~~~~~~~  536 (626)
                      |.+.   -++|-+|.+++..=        --.+|...|+..+.--|++.  +++...+..++..+...+-.-
T Consensus       102 P~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~I  173 (254)
T COG4105         102 PTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAI  173 (254)
T ss_pred             CCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence            8775   47899999987642        23568888888999888763  466666666666655544333

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.66  E-value=0.00011  Score=73.32  Aligned_cols=105  Identities=12%  Similarity=0.135  Sum_probs=94.0

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      .+.+.+.|-++|-.++|+.++..|++|+..    ...++        ..+.+|+|++.+..-.|++.-|..++.-+|.-|
T Consensus       358 peLf~NigLCC~yaqQ~D~~L~sf~RAlst----at~~~--------~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d  425 (478)
T KOG1129|consen  358 PELFCNIGLCCLYAQQIDLVLPSFQRALST----ATQPG--------QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD  425 (478)
T ss_pred             hHHHhhHHHHHHhhcchhhhHHHHHHHHhh----ccCcc--------hhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence            456778899999999999999999999983    32221        235699999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      +++..||.++|..-+..|+.++|+..|+.|-.+.|+.
T Consensus       426 ~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m  462 (478)
T KOG1129|consen  426 AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM  462 (478)
T ss_pred             cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence            9999999999999999999999999999999999974

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.66  E-value=0.00094  Score=61.92  Aligned_cols=101  Identities=19%  Similarity=0.302  Sum_probs=88.3

Q ss_pred             HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006908          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (626)
Q Consensus       400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~  479 (626)
                      .....||.+...|+|.+|..+|++++.-   +...+           ..+++.+|.+++.++++..|...++.+.+.+|.
T Consensus        91 nr~rLa~al~elGr~~EA~~hy~qalsG---~fA~d-----------~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa  156 (251)
T COG4700          91 NRYRLANALAELGRYHEAVPHYQQALSG---IFAHD-----------AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA  156 (251)
T ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHhcc---ccCCC-----------HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc
Confidence            4456889999999999999999999983   22233           357788999999999999999999999999985


Q ss_pred             --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          480 --HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       480 --~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                        .+..+...|+++..+|.+.+|...|+.|+..-|+.
T Consensus       157 ~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~  193 (251)
T COG4700         157 FRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP  193 (251)
T ss_pred             cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH
Confidence              57888999999999999999999999999999885

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.65  E-value=0.00024  Score=75.95  Aligned_cols=81  Identities=15%  Similarity=0.178  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 006908          449 LHLNVAACLLKLGECRKSIEACNKVLDAN-------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAA  521 (626)
Q Consensus       449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~d-------p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~  521 (626)
                      ++.-+|.+.+..+.|.+|+.++..+|+.-       +.+...+.++|.++.+++.|++|+..|++||.+.|.+ ..+...
T Consensus       416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~-~~~~as  494 (611)
T KOG1173|consen  416 VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD-ASTHAS  494 (611)
T ss_pred             hhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc-hhHHHH
Confidence            55668999999999999999999998432       1244568999999999999999999999999999997 566666


Q ss_pred             HHHHHHHHH
Q 006908          522 LSKLKKQRQ  530 (626)
Q Consensus       522 l~~l~~~~~  530 (626)
                      +..+...+.
T Consensus       495 ig~iy~llg  503 (611)
T KOG1173|consen  495 IGYIYHLLG  503 (611)
T ss_pred             HHHHHHHhc
Confidence            665544433

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.64  E-value=0.0018  Score=69.83  Aligned_cols=123  Identities=11%  Similarity=0.047  Sum_probs=81.1

Q ss_pred             HHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006908          394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV  473 (626)
Q Consensus       394 ~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~a  473 (626)
                      +.+.+.....+|-..+-.|+|..|.+...++-...     +.+          ...+...|.+..++|+++.|..++.++
T Consensus        80 r~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~-----~~p----------~l~~llaA~aA~~~g~~~~A~~~l~~A  144 (398)
T PRK10747         80 KRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHA-----EQP----------VVNYLLAAEAAQQRGDEARANQHLERA  144 (398)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcc-----cch----------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            45567777788888888888888887776655511     110          112333455557778888888888888


Q ss_pred             HHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 006908          474 LDANPAHVK-GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEV  532 (626)
Q Consensus       474 L~~dp~~~k-a~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~  532 (626)
                      .+.+|++.- .....+..+...|++++|++.++++++.+|+| +.+...+..+.....+.
T Consensus       145 ~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~-~~al~ll~~~~~~~gdw  203 (398)
T PRK10747        145 AELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRH-PEVLRLAEQAYIRTGAW  203 (398)
T ss_pred             HhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHhH
Confidence            777777643 33455777777888888888888888888876 55555555555444433

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.63  E-value=0.00038  Score=75.47  Aligned_cols=117  Identities=15%  Similarity=0.140  Sum_probs=87.4

Q ss_pred             HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006908          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (626)
Q Consensus       400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~  479 (626)
                      .+..++-.+|..++|.+.+...+..|.    -.|...+           .+.-.|..+..+|+-++|...+..++..|+.
T Consensus         9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~----k~~eHge-----------slAmkGL~L~~lg~~~ea~~~vr~glr~d~~   73 (700)
T KOG1156|consen    9 ALFRRALKCYETKQYKKGLKLIKQILK----KFPEHGE-----------SLAMKGLTLNCLGKKEEAYELVRLGLRNDLK   73 (700)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHH----hCCccch-----------hHHhccchhhcccchHHHHHHHHHHhccCcc
Confidence            345566667777888888888877777    3444322           2333577777888888888888888888888


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 006908          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEV  532 (626)
Q Consensus       480 ~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~  532 (626)
                      +.-+|.-+|..+..-.+|++|+++|+.||.++|+| ..+.+-|..++..++..
T Consensus        74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN-~qilrDlslLQ~QmRd~  125 (700)
T KOG1156|consen   74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDN-LQILRDLSLLQIQMRDY  125 (700)
T ss_pred             cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHhh
Confidence            88888888888888888888888888888888887 56777777776555543

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.63  E-value=0.00031  Score=74.56  Aligned_cols=87  Identities=23%  Similarity=0.294  Sum_probs=57.0

Q ss_pred             hchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 006908          405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGL  484 (626)
Q Consensus       405 Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~  484 (626)
                      +..++..++-.+|++...+++.    ..|.+           ..++.-.|..+++.++|+.|+..+.++.++.|++.++|
T Consensus       207 A~v~l~~~~E~~AI~ll~~aL~----~~p~d-----------~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W  271 (395)
T PF09295_consen  207 ARVYLLMNEEVEAIRLLNEALK----ENPQD-----------SELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETW  271 (395)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHH
Confidence            3344444555666666666665    34433           33555567777777777777777777777777777777


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHH
Q 006908          485 YRRGMAYMALGEFEEAQRDFEM  506 (626)
Q Consensus       485 ~~~g~a~~~lg~~~eA~~~~~k  506 (626)
                      +.++.+|..+|+|++|+..++.
T Consensus       272 ~~La~~Yi~~~d~e~ALlaLNs  293 (395)
T PF09295_consen  272 YQLAECYIQLGDFENALLALNS  293 (395)
T ss_pred             HHHHHHHHhcCCHHHHHHHHhc
Confidence            7777777777777777765553

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.60  E-value=0.00012  Score=75.24  Aligned_cols=112  Identities=19%  Similarity=0.244  Sum_probs=88.2

Q ss_pred             hhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHH
Q 006908          392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN  471 (626)
Q Consensus       392 ~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~  471 (626)
                      ..+..+...+-+.||.||-.|+|+.|+..-+.-|.+-....  +       ....-.+|.|+|.||.-+|+|+.|+++|.
T Consensus       189 gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG--D-------rAaeRRA~sNlgN~hiflg~fe~A~ehYK  259 (639)
T KOG1130|consen  189 GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG--D-------RAAERRAHSNLGNCHIFLGNFELAIEHYK  259 (639)
T ss_pred             hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh--h-------HHHHHHhhcccchhhhhhcccHhHHHHHH
Confidence            44555667788899999999999999999888776322111  0       11223589999999999999999999999


Q ss_pred             HHHHhC----C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 006908          472 KVLDAN----P--AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK  512 (626)
Q Consensus       472 ~aL~~d----p--~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P  512 (626)
                      .++.+.    .  ..+..-|.+|++|.-+.+++.|+.++++-|.+..
T Consensus       260 ~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq  306 (639)
T KOG1130|consen  260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ  306 (639)
T ss_pred             HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            987553    2  2356789999999999999999999999887743

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.60  E-value=0.00015  Score=51.70  Aligned_cols=39  Identities=31%  Similarity=0.408  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 006908          483 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAAL  522 (626)
Q Consensus       483 a~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l  522 (626)
                      +++.+|.+|..+|++++|++.|+++++.+|+| ..++..|
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~-~~a~~~L   41 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDD-PEAWRAL   41 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC-HHHHHHh
Confidence            44555555555555555555555555555554 3344333

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.59  E-value=0.00019  Score=73.54  Aligned_cols=106  Identities=18%  Similarity=0.209  Sum_probs=75.6

Q ss_pred             HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (626)
Q Consensus       395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL  474 (626)
                      -+.+..+..-|+.+-..++|.+|...|.+|..+......         ....+.+|.+.+.||.+. ++.+|+.++.+|+
T Consensus        32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~---------~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~  101 (282)
T PF14938_consen   32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGD---------KFEAAKAYEEAANCYKKG-DPDEAIECYEKAI  101 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHH
Confidence            345666777777777888999999999999886544221         112356777788887666 8888888888888


Q ss_pred             HhC--CC----CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhc
Q 006908          475 DAN--PA----HVKGLYRRGMAYMAL-GEFEEAQRDFEMMMKV  510 (626)
Q Consensus       475 ~~d--p~----~~ka~~~~g~a~~~l-g~~~eA~~~~~kAl~l  510 (626)
                      .+-  ..    -++++.++|.+|... +++++|++.|++|+++
T Consensus       102 ~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~  144 (282)
T PF14938_consen  102 EIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAEL  144 (282)
T ss_dssp             HHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHH
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            762  11    267888888888887 8888888888888887

>PRK11906 transcriptional regulator; Provisional

Probab=97.58  E-value=0.00059  Score=72.40  Aligned_cols=88  Identities=13%  Similarity=0.035  Sum_probs=78.7

Q ss_pred             cccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006908          411 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA  490 (626)
Q Consensus       411 ~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a  490 (626)
                      ...-.+|.++-.+|+.    +.+.|           ..++..+|.+....++++.|+..+++|+.++|+.+.+||.+|..
T Consensus       317 ~~~~~~a~~~A~rAve----ld~~D-----------a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~  381 (458)
T PRK11906        317 ELAAQKALELLDYVSD----ITTVD-----------GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALV  381 (458)
T ss_pred             hHHHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHH
Confidence            4456677777777777    67766           45788899999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCC
Q 006908          491 YMALGEFEEAQRDFEMMMKVDKS  513 (626)
Q Consensus       491 ~~~lg~~~eA~~~~~kAl~l~P~  513 (626)
                      +...|+.++|++.+++|++++|-
T Consensus       382 ~~~~G~~~~a~~~i~~alrLsP~  404 (458)
T PRK11906        382 HFHNEKIEEARICIDKSLQLEPR  404 (458)
T ss_pred             HHHcCCHHHHHHHHHHHhccCch
Confidence            99999999999999999999997

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.58  E-value=0.0011  Score=58.23  Aligned_cols=65  Identities=18%  Similarity=0.172  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908          449 LHLNVAACLLKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (626)
Q Consensus       449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~---~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~  513 (626)
                      +++++|.++-.+|+..+|+..|.++++.....   ..++..+|.++..+|++++|+..|++++...|+
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~   70 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD   70 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            67899999999999999999999999975433   679999999999999999999999999998887

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.56  E-value=0.00018  Score=51.18  Aligned_cols=42  Identities=14%  Similarity=0.168  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006908          449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA  490 (626)
Q Consensus       449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a  490 (626)
                      +++.+|.+|..+|++++|+..++++++.+|+|+.+++.+|.+
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l   44 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL   44 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence            678899999999999999999999999999999999999863

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.54  E-value=0.0015  Score=61.23  Aligned_cols=64  Identities=19%  Similarity=0.262  Sum_probs=57.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 006908          453 VAACLLKLGECRKSIEACNKVLDANPAHV-----KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP  516 (626)
Q Consensus       453 la~~~~kl~~~~~A~~~~~~aL~~dp~~~-----ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~  516 (626)
                      -|.-+++.|+|.+|...|..||++.|...     -.|.++|.|+++++.++.|+.++.+|++|+|.+..
T Consensus       101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~k  169 (271)
T KOG4234|consen  101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEK  169 (271)
T ss_pred             HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHH
Confidence            36668899999999999999999998753     36889999999999999999999999999998743

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.54  E-value=0.00058  Score=70.28  Aligned_cols=105  Identities=22%  Similarity=0.220  Sum_probs=84.8

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~  476 (626)
                      .-.++-+.||.+.-.|+|+.|+++|++++.+-..+....         ..+...+.+|.+|.-+++|.+||.+..+-|.+
T Consensus       234 eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~---------vEAQscYSLgNtytll~e~~kAI~Yh~rHLaI  304 (639)
T KOG1130|consen  234 ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRT---------VEAQSCYSLGNTYTLLKEVQKAITYHQRHLAI  304 (639)
T ss_pred             HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchh---------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            334566899999999999999999999887543332221         22455667999999999999999999987766


Q ss_pred             C------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908          477 N------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (626)
Q Consensus       477 d------p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l  510 (626)
                      .      -....|++.+|++|..+|..+.|+...++++++
T Consensus       305 AqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  305 AQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS  344 (639)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            4      245789999999999999999999998888776

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.53  E-value=0.00048  Score=50.92  Aligned_cols=48  Identities=21%  Similarity=0.391  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006908          482 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (626)
Q Consensus       482 ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~  530 (626)
                      ..+|.+|.++.++|+|++|+.+++.+|+++|+| ..+......++.+++
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N-~Qa~~L~~~i~~~i~   49 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDN-RQAQSLKELIEDKIQ   49 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS--HHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc-HHHHHHHHHHHHHHh
Confidence            468889999999999999999999999999998 556666665554443

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.53  E-value=0.002  Score=64.71  Aligned_cols=115  Identities=20%  Similarity=0.226  Sum_probs=94.6

Q ss_pred             HHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006908          394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV  473 (626)
Q Consensus       394 ~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~a  473 (626)
                      .++.|.-+.+.+..+....+++.|.....+|+.    .+|..           +.+-.-+|.+++..|+|..|++.+..+
T Consensus       176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq----a~~~c-----------vRAsi~lG~v~~~~g~y~~AV~~~e~v  240 (389)
T COG2956         176 RVEIAQFYCELAQQALASSDVDRARELLKKALQ----ADKKC-----------VRASIILGRVELAKGDYQKAVEALERV  240 (389)
T ss_pred             hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh----hCccc-----------eehhhhhhHHHHhccchHHHHHHHHHH
Confidence            355677788888888889999999999999998    45443           334455899999999999999999999


Q ss_pred             HHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006908          474 LDANPAH-VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (626)
Q Consensus       474 L~~dp~~-~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l  525 (626)
                      ++.||.. ...+-.+..||..+|+.++.+..+.++.+..++.  ++...+..+
T Consensus       241 ~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~--~~~l~l~~l  291 (389)
T COG2956         241 LEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA--DAELMLADL  291 (389)
T ss_pred             HHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc--cHHHHHHHH
Confidence            9999987 4678889999999999999999999999998874  333344433

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.49  E-value=0.00021  Score=71.76  Aligned_cols=62  Identities=21%  Similarity=0.359  Sum_probs=59.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 006908          451 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK  512 (626)
Q Consensus       451 ~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P  512 (626)
                      --.|.-|+|+|.|++|+.+|.+++.++|.|+-.+.+||.||+++..|..|..++..|+.||-
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~  162 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK  162 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH
Confidence            34789999999999999999999999999999999999999999999999999999999974

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.47  E-value=0.00045  Score=75.93  Aligned_cols=84  Identities=15%  Similarity=0.209  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006908          449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (626)
Q Consensus       449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~  528 (626)
                      +..-+|...+..++|.+|..+++..++++|-....||++|.|..+++++..|..+|.+++.++|+| ..++++|....-+
T Consensus       487 A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~-~eaWnNls~ayi~  565 (777)
T KOG1128|consen  487 AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN-AEAWNNLSTAYIR  565 (777)
T ss_pred             HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc-hhhhhhhhHHHHH
Confidence            334445555667999999999999999999999999999999999999999999999999999998 6888888877655


Q ss_pred             HHHHH
Q 006908          529 RQEVE  533 (626)
Q Consensus       529 ~~~~~  533 (626)
                      ..+..
T Consensus       566 ~~~k~  570 (777)
T KOG1128|consen  566 LKKKK  570 (777)
T ss_pred             HhhhH
Confidence            55433

>TIGR00540 hemY_coli hemY protein

Probab=97.44  E-value=0.0018  Score=70.06  Aligned_cols=122  Identities=17%  Similarity=0.032  Sum_probs=92.9

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~  476 (626)
                      ........|..+...|++++|.....+++.    ..|++...         ....-+....+..++...++..++++++.
T Consensus       262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~----~~pd~~~~---------~~~~l~~~~~l~~~~~~~~~~~~e~~lk~  328 (409)
T TIGR00540       262 NIALKIALAEHLIDCDDHDSAQEIIFDGLK----KLGDDRAI---------SLPLCLPIPRLKPEDNEKLEKLIEKQAKN  328 (409)
T ss_pred             CHHHHHHHHHHHHHCCChHHHHHHHHHHHh----hCCCcccc---------hhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence            445566788889999999999999999999    56655210         00112333345568889999999999999


Q ss_pred             CCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 006908          477 NPAHV--KGLYRRGMAYMALGEFEEAQRDFE--MMMKVDKSSEPDATAALSKLKKQRQEVE  533 (626)
Q Consensus       477 dp~~~--ka~~~~g~a~~~lg~~~eA~~~~~--kAl~l~P~~~~~~~~~l~~l~~~~~~~~  533 (626)
                      +|+++  ..+..+|..++..|+|++|.++|+  ++++.+|++ . +...+..+..+..+..
T Consensus       329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~-~~~~La~ll~~~g~~~  387 (409)
T TIGR00540       329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-N-DLAMAADAFDQAGDKA  387 (409)
T ss_pred             CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-H-HHHHHHHHHHHcCCHH
Confidence            99999  788899999999999999999999  688899985 3 3446666665554433

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.43  E-value=0.0007  Score=59.06  Aligned_cols=61  Identities=21%  Similarity=0.270  Sum_probs=57.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908          453 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (626)
Q Consensus       453 la~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~  513 (626)
                      -|.+....++.+.|++.|.++|.+.|.++.||.+|++++.-.|+.++|+.++++|+++..+
T Consensus        49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~  109 (175)
T KOG4555|consen   49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGD  109 (175)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc
Confidence            4666778899999999999999999999999999999999999999999999999999654

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.42  E-value=0.0014  Score=67.60  Aligned_cols=113  Identities=17%  Similarity=0.204  Sum_probs=88.3

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHH-----------------HHHhhhh------hHHHHHHH
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG-----------------KVFVGKR------NLLHLNVA  454 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~-----------------~~~~~~~------~~~~~Nla  454 (626)
                      ...+-..|..+|..|++.+|+..|+++..    ++|..-+-.                 .....+.      +.-|+--+
T Consensus       232 vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~----~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~  307 (564)
T KOG1174|consen  232 EHLMMALGKCLYYNGDYFQAEDIFSSTLC----ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHA  307 (564)
T ss_pred             HHHHHHHhhhhhhhcCchHHHHHHHHHhh----CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhh
Confidence            44566889999999999999999999987    555542211                 1111111      11123334


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       455 ~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      ...+..++|..|+.+..++|..+|++..||...|+++..+++.++|+-.|+.|..+.|..
T Consensus       308 ~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r  367 (564)
T KOG1174|consen  308 QLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR  367 (564)
T ss_pred             hhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhh
Confidence            455678899999999999999999999999999999999999999999999999999864

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.42  E-value=0.00032  Score=46.52  Aligned_cols=33  Identities=21%  Similarity=0.371  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 006908          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (626)
Q Consensus       448 ~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~  480 (626)
                      .+++++|.+++++|+|.+|+.+|.++++++|+|
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            478899999999999999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.39  E-value=0.0044  Score=62.18  Aligned_cols=127  Identities=17%  Similarity=0.146  Sum_probs=97.5

Q ss_pred             ccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006908          412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAY  491 (626)
Q Consensus       412 g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~  491 (626)
                      ...+..+...+.-|.    .+|.|.+           -|.-||.+|+.++++..|...|.+|+++.|+|+..+.-+|.++
T Consensus       136 ~~~~~l~a~Le~~L~----~nP~d~e-----------gW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL  200 (287)
T COG4235         136 QEMEALIARLETHLQ----QNPGDAE-----------GWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEAL  200 (287)
T ss_pred             ccHHHHHHHHHHHHH----hCCCCch-----------hHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            345566666666676    6787743           5677999999999999999999999999999999999999998


Q ss_pred             HHcC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCccccc
Q 006908          492 MALG---EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVG  555 (626)
Q Consensus       492 ~~lg---~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  555 (626)
                      +...   .-.+|...|++|+.+||.| ..+...|..-.....++.+ -...++.|.+..+....-..
T Consensus       201 ~~~a~~~~ta~a~~ll~~al~~D~~~-iral~lLA~~afe~g~~~~-A~~~Wq~lL~~lp~~~~rr~  265 (287)
T COG4235         201 YYQAGQQMTAKARALLRQALALDPAN-IRALSLLAFAAFEQGDYAE-AAAAWQMLLDLLPADDPRRS  265 (287)
T ss_pred             HHhcCCcccHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHcccHHH-HHHHHHHHHhcCCCCCchHH
Confidence            8754   3678999999999999998 5677777665544444433 34567888887766655443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.39  E-value=0.0047  Score=66.63  Aligned_cols=97  Identities=16%  Similarity=0.197  Sum_probs=82.6

Q ss_pred             hhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 006908          404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG  483 (626)
Q Consensus       404 ~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka  483 (626)
                      .+....++|+++.|..+|.+|.+    ..|++.          .....-.+..++..|+++.|+..++++++.+|+++.+
T Consensus       124 aA~aA~~~g~~~~A~~~l~~A~~----~~~~~~----------~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~a  189 (398)
T PRK10747        124 AAEAAQQRGDEARANQHLERAAE----LADNDQ----------LPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEV  189 (398)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHh----cCCcch----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH
Confidence            34555899999999999999998    555441          1223345889999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          484 LYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       484 ~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      +..++.+|...|+|++|++.+.+..+..+.+
T Consensus       190 l~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~  220 (398)
T PRK10747        190 LRLAEQAYIRTGAWSSLLDILPSMAKAHVGD  220 (398)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHcCCCC
Confidence            9999999999999999999999988887665

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.38  E-value=0.00026  Score=47.10  Aligned_cols=33  Identities=30%  Similarity=0.587  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908          481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (626)
Q Consensus       481 ~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~  513 (626)
                      +++|+.+|.++..+|++++|+..|++|++++|+
T Consensus         1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            357788888888888888888888888888774

...

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.27  E-value=0.0063  Score=59.12  Aligned_cols=118  Identities=20%  Similarity=0.324  Sum_probs=85.6

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcC-----------CHHHH
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-----------ECRKS  466 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~-----------~~~~A  466 (626)
                      ...+...|..+|+.|+|..|+..|++.+.    ..|.++        ...-+++.+|.|++++.           ...+|
T Consensus        42 ~~A~l~la~a~y~~~~y~~A~~~~~~fi~----~yP~~~--------~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A  109 (203)
T PF13525_consen   42 PQAQLMLAYAYYKQGDYEEAIAAYERFIK----LYPNSP--------KADYALYMLGLSYYKQIPGILRSDRDQTSTRKA  109 (203)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHH----H-TT-T--------THHHHHHHHHHHHHHHHHHHH-TT---HHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCCc--------chhhHHHHHHHHHHHhCccchhcccChHHHHHH
Confidence            34556789999999999999999999999    455442        12346777788876653           34589


Q ss_pred             HHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006908          467 IEACNKVLDANPAHV-----------------KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (626)
Q Consensus       467 ~~~~~~aL~~dp~~~-----------------ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~  528 (626)
                      +..+...+..-|++.                 .--+..|.-|+..|.|..|+..|+.+++.-|+. +.+...|..+...
T Consensus       110 ~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t-~~~~~al~~l~~~  187 (203)
T PF13525_consen  110 IEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDT-PAAEEALARLAEA  187 (203)
T ss_dssp             HHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTS-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCC-chHHHHHHHHHHH
Confidence            999999999999872                 223446788889999999999999999999986 4555555555433

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.24  E-value=0.0096  Score=58.08  Aligned_cols=123  Identities=18%  Similarity=0.157  Sum_probs=88.1

Q ss_pred             hhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHH-----------------HHhhh------hhHHHHHHHHHHHH
Q 006908          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGK-----------------VFVGK------RNLLHLNVAACLLK  459 (626)
Q Consensus       403 ~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~-----------------~~~~~------~~~~~~Nla~~~~k  459 (626)
                      -.|..+-..|+|++|+++|...|.    -+|.+.-...                 .+.+.      -..+|.-+|..|+.
T Consensus        91 lkam~lEa~~~~~~A~e~y~~lL~----ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~  166 (289)
T KOG3060|consen   91 LKAMLLEATGNYKEAIEYYESLLE----DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLS  166 (289)
T ss_pred             HHHHHHHHhhchhhHHHHHHHHhc----cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence            455566667889999999998887    3444421110                 01110      12367889999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006908          460 LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGE---FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (626)
Q Consensus       460 l~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~---~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~  530 (626)
                      +++|.+|.-++++++-+.|.|+-.+-|+|-.++-+|-   ++-|+++|.+|++++|.+ -.+...+-.+-..+.
T Consensus       167 ~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~-~ral~GI~lc~~~la  239 (289)
T KOG3060|consen  167 EGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN-LRALFGIYLCGSALA  239 (289)
T ss_pred             HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh-HHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999887764   667999999999999865 334444444444443

>PRK10941 hypothetical protein; Provisional

Probab=97.22  E-value=0.0034  Score=63.30  Aligned_cols=70  Identities=17%  Similarity=0.198  Sum_probs=66.0

Q ss_pred             hhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          445 KRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       445 ~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      +......|+=.+|.+.++|..|+.+++.+|.++|+++--+--||.+|.+++.+..|+.+|+..++..|++
T Consensus       179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d  248 (269)
T PRK10941        179 VIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPED  248 (269)
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc
Confidence            4456788999999999999999999999999999999999999999999999999999999999999986

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.20  E-value=0.0026  Score=63.04  Aligned_cols=100  Identities=22%  Similarity=0.274  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH--HHHHHHHH
Q 006908          450 HLNVAACLLKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP--DATAALSK  524 (626)
Q Consensus       450 ~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~---~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~--~~~~~l~~  524 (626)
                      .+|.|.-+++.|+|..|...|..-+..-|++   +.|+|++|.+++.+|+|++|...|..+++-.|++.+  ++.-.|..
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            7889999999999999999999999999876   679999999999999999999999999999888742  33444444


Q ss_pred             HHHHHHHHHHHHHHHHHccccCCCCC
Q 006908          525 LKKQRQEVESKARKQFKGLFDKKPGE  550 (626)
Q Consensus       525 l~~~~~~~~~~~~~~~~~~~~~~~~~  550 (626)
                      +...+.+ ....+..+....++.++.
T Consensus       224 ~~~~l~~-~d~A~atl~qv~k~YP~t  248 (262)
T COG1729         224 SLGRLGN-TDEACATLQQVIKRYPGT  248 (262)
T ss_pred             HHHHhcC-HHHHHHHHHHHHHHCCCC
Confidence            4443332 233345566555555443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.19  E-value=0.0033  Score=69.77  Aligned_cols=114  Identities=15%  Similarity=0.115  Sum_probs=94.5

Q ss_pred             hhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 006908          404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG  483 (626)
Q Consensus       404 ~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka  483 (626)
                      .|..+.+.++-++|..+..+|-.+    .           .+.+..|+-+|.++...|.+.+|...|..|+.+||+++.+
T Consensus       656 aa~~~~~~~~~~~a~~CL~Ea~~~----~-----------~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s  720 (799)
T KOG4162|consen  656 AADLFLLSGNDDEARSCLLEASKI----D-----------PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPS  720 (799)
T ss_pred             HHHHHHhcCCchHHHHHHHHHHhc----c-----------hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHH
Confidence            344444555666777777777662    2           2346788889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHH--HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 006908          484 LYRRGMAYMALGEFEEAQR--DFEMMMKVDKSSEPDATAALSKLKKQRQEVE  533 (626)
Q Consensus       484 ~~~~g~a~~~lg~~~eA~~--~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~  533 (626)
                      ..-+|.++...|+-.-|..  .+..|+++||.| ++++..|..+-+++....
T Consensus       721 ~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n-~eaW~~LG~v~k~~Gd~~  771 (799)
T KOG4162|consen  721 MTALAELLLELGSPRLAEKRSLLSDALRLDPLN-HEAWYYLGEVFKKLGDSK  771 (799)
T ss_pred             HHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHccchH
Confidence            9999999999999877777  999999999998 789999999877766544

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.19  E-value=0.0085  Score=58.46  Aligned_cols=53  Identities=19%  Similarity=0.283  Sum_probs=42.2

Q ss_pred             hHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 006908          447 NLLHLNVAACLLKLG---ECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEE  499 (626)
Q Consensus       447 ~~~~~Nla~~~~kl~---~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~e  499 (626)
                      ..++..+|.+++-+|   ++.-|..+|.++|.++|.+..++|-+-.|...+-+...
T Consensus       188 ~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~sk  243 (289)
T KOG3060|consen  188 PLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQISK  243 (289)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHHhH
Confidence            456777888888776   68889999999999999999999988777765544433

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.18  E-value=0.0018  Score=66.46  Aligned_cols=105  Identities=19%  Similarity=0.258  Sum_probs=66.5

Q ss_pred             hhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHH--cC--CHHHHHHHHHHHHHhCCCCHH
Q 006908          407 RLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK--LG--ECRKSIEACNKVLDANPAHVK  482 (626)
Q Consensus       407 ~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~k--l~--~~~~A~~~~~~aL~~dp~~~k  482 (626)
                      .+.+.++++.|.+.++.+-+    +..+             .+..++|.++..  .|  .+.+|...|.......+.+++
T Consensus       140 i~L~~~R~dlA~k~l~~~~~----~~eD-------------~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~  202 (290)
T PF04733_consen  140 ILLKMNRPDLAEKELKNMQQ----IDED-------------SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPK  202 (290)
T ss_dssp             HHHHTT-HHHHHHHHHHHHC----CSCC-------------HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHH
T ss_pred             HHHHcCCHHHHHHHHHHHHh----cCCc-------------HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHH
Confidence            44556666666666655443    2211             234445444433  33  588888888887776677888


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 006908          483 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (626)
Q Consensus       483 a~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~  529 (626)
                      .+..++.|++.+|+|++|...+++|+..+|.+ +++..++..+....
T Consensus       203 ~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~-~d~LaNliv~~~~~  248 (290)
T PF04733_consen  203 LLNGLAVCHLQLGHYEEAEELLEEALEKDPND-PDTLANLIVCSLHL  248 (290)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHh
Confidence            88888888888888888888888888888875 56666665554333

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.17  E-value=0.00074  Score=64.97  Aligned_cols=71  Identities=14%  Similarity=0.189  Sum_probs=62.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 006908          453 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK  524 (626)
Q Consensus       453 la~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~  524 (626)
                      -+.+++.-+.|..|+.+|.+||.++|..+.-|.+++.||+++.+|+.+..++++|++++|+. .....-|..
T Consensus        16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~-vk~h~flg~   86 (284)
T KOG4642|consen   16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL-VKAHYFLGQ   86 (284)
T ss_pred             ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH-HHHHHHHHH
Confidence            47778888999999999999999999999999999999999999999999999999999985 334444443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.16  E-value=0.0038  Score=72.40  Aligned_cols=112  Identities=17%  Similarity=0.219  Sum_probs=89.4

Q ss_pred             HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH---
Q 006908          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD---  475 (626)
Q Consensus       399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~---  475 (626)
                      ..++.+|.+|-+.|++++|...|+++|.    +.|.+           +.+++|+|..|... +.++|+.++.+|+.   
T Consensus       117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~----~D~~n-----------~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i  180 (906)
T PRK14720        117 LALRTLAEAYAKLNENKKLKGVWERLVK----ADRDN-----------PEIVKKLATSYEEE-DKEKAITYLKKAIYRFI  180 (906)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHh----cCccc-----------HHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence            4778899999999999999999999999    67777           45888888888888 88888888888873   


Q ss_pred             -----------------hCCCCHHHHHH--------HH------------HHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 006908          476 -----------------ANPAHVKGLYR--------RG------------MAYMALGEFEEAQRDFEMMMKVDKSSEPDA  518 (626)
Q Consensus       476 -----------------~dp~~~ka~~~--------~g------------~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~  518 (626)
                                       .+|.+..-+++        ++            .+|....+|++++..|+.+|+++|+| .-+
T Consensus       181 ~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n-~~a  259 (906)
T PRK14720        181 KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKN-NKA  259 (906)
T ss_pred             hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcc-hhh
Confidence                             34554433222        34            77888999999999999999999998 456


Q ss_pred             HHHHHHHHH
Q 006908          519 TAALSKLKK  527 (626)
Q Consensus       519 ~~~l~~l~~  527 (626)
                      +..|..+.+
T Consensus       260 ~~~l~~~y~  268 (906)
T PRK14720        260 REELIRFYK  268 (906)
T ss_pred             HHHHHHHHH
Confidence            667766654

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.14  E-value=0.0069  Score=64.47  Aligned_cols=107  Identities=18%  Similarity=0.175  Sum_probs=92.0

Q ss_pred             cccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006908          411 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA  490 (626)
Q Consensus       411 ~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a  490 (626)
                      .++|+.|+..+++...    ..|.              +..-+|.+++.+++..+|++...++|..+|.++..+.-.+..
T Consensus       182 t~~~~~ai~lle~L~~----~~pe--------------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~f  243 (395)
T PF09295_consen  182 TQRYDEAIELLEKLRE----RDPE--------------VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEF  243 (395)
T ss_pred             cccHHHHHHHHHHHHh----cCCc--------------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            4568888888888666    3332              344489999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 006908          491 YMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKA  536 (626)
Q Consensus       491 ~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~~  536 (626)
                      ++..++++.|+...++|.++.|++ -..+..|..+...+.+.+.+-
T Consensus       244 Ll~k~~~~lAL~iAk~av~lsP~~-f~~W~~La~~Yi~~~d~e~AL  288 (395)
T PF09295_consen  244 LLSKKKYELALEIAKKAVELSPSE-FETWYQLAECYIQLGDFENAL  288 (395)
T ss_pred             HHhcCCHHHHHHHHHHHHHhCchh-HHHHHHHHHHHHhcCCHHHHH
Confidence            999999999999999999999996 689999999988877776654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.11  E-value=0.0018  Score=69.40  Aligned_cols=109  Identities=20%  Similarity=0.284  Sum_probs=92.8

Q ss_pred             hhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 006908          404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG  483 (626)
Q Consensus       404 ~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka  483 (626)
                      .|-.+-..|+...|+.+...|+.    ..|...          ..-..|+|.+.++-+....|-..+.++|.++...+-.
T Consensus       613 aglywr~~gn~~~a~~cl~~a~~----~~p~~~----------~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~  678 (886)
T KOG4507|consen  613 AGLYWRAVGNSTFAIACLQRALN----LAPLQQ----------DVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLT  678 (886)
T ss_pred             ccceeeecCCcHHHHHHHHHHhc----cChhhh----------cccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchH
Confidence            44444568899999999999998    444321          2356889999999999999999999999999888999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006908          484 LYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (626)
Q Consensus       484 ~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~  527 (626)
                      +|-+|+++..+.+.+.|++.|+.|++++|++ ..+...|..+..
T Consensus       679 ~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~-~~~~~~l~~i~c  721 (886)
T KOG4507|consen  679 FLSLGNAYLALKNISGALEAFRQALKLTTKC-PECENSLKLIRC  721 (886)
T ss_pred             HHhcchhHHHHhhhHHHHHHHHHHHhcCCCC-hhhHHHHHHHHH
Confidence            9999999999999999999999999999998 778887776654

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.08  E-value=0.0058  Score=67.51  Aligned_cols=67  Identities=18%  Similarity=0.250  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       448 ~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      -+++.+|++|..+|++.+|+.+.++||+..|..+..|+.+|+++-+.|++.+|.++++.|-.+|+.+
T Consensus       195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D  261 (517)
T PF12569_consen  195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD  261 (517)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh
Confidence            3667899999999999999999999999999999999999999999999999999999999999875

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.06  E-value=0.0043  Score=63.71  Aligned_cols=88  Identities=20%  Similarity=0.255  Sum_probs=72.6

Q ss_pred             ccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006908          412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAY  491 (626)
Q Consensus       412 g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~  491 (626)
                      .++..|...|+....    ..+.+           ..+++.+|.|++.+|+|++|...+.+++..+|+++.++.++..+.
T Consensus       181 e~~~~A~y~f~El~~----~~~~t-----------~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~  245 (290)
T PF04733_consen  181 EKYQDAFYIFEELSD----KFGST-----------PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCS  245 (290)
T ss_dssp             TCCCHHHHHHHHHHC----CS--S-----------HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHh----ccCCC-----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            368899999998655    22222           456788999999999999999999999999999999999999999


Q ss_pred             HHcCCH-HHHHHHHHHHHhcCCCC
Q 006908          492 MALGEF-EEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       492 ~~lg~~-~eA~~~~~kAl~l~P~~  514 (626)
                      ..+|+. +.+.+.+.+....+|++
T Consensus       246 ~~~gk~~~~~~~~l~qL~~~~p~h  269 (290)
T PF04733_consen  246 LHLGKPTEAAERYLSQLKQSNPNH  269 (290)
T ss_dssp             HHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred             HHhCCChhHHHHHHHHHHHhCCCC
Confidence            999999 66778888888899987

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.04  E-value=0.0034  Score=62.78  Aligned_cols=69  Identities=13%  Similarity=0.102  Sum_probs=62.6

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 006908          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV---KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (626)
Q Consensus       447 ~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~---ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~  515 (626)
                      ...++..|.-++..|+|.+|+..+.+++...|...   .+.+.+|.+|+.+++|++|+..|++++++.|++.
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~  103 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP  103 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC
Confidence            44567789999999999999999999999999875   4569999999999999999999999999999874

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.00  E-value=0.0033  Score=71.42  Aligned_cols=76  Identities=13%  Similarity=0.129  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908          450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (626)
Q Consensus       450 ~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~  526 (626)
                      |..+|..|++.+++..|+..++.||+.+|.+..+|.-+|.||...|+|.-|++.|.+|..++|.+ .-.+.-.+.++
T Consensus       565 W~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s-~y~~fk~A~~e  640 (1238)
T KOG1127|consen  565 WVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS-KYGRFKEAVME  640 (1238)
T ss_pred             hhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh-HHHHHHHHHHH
Confidence            45589999999999999999999999999999999999999999999999999999999999986 33333333333

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.00  E-value=0.0025  Score=63.28  Aligned_cols=93  Identities=24%  Similarity=0.379  Sum_probs=75.4

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~  476 (626)
                      .|..+.+.|..+|+.|+|+.|++.|+.|+.    .....           ..+-+|+|.|+++.++|..|+++.+++++.
T Consensus       143 ~Ad~~in~gCllykegqyEaAvqkFqaAlq----vsGyq-----------pllAYniALaHy~~~qyasALk~iSEIieR  207 (459)
T KOG4340|consen  143 EADGQINLGCLLYKEGQYEAAVQKFQAALQ----VSGYQ-----------PLLAYNLALAHYSSRQYASALKHISEIIER  207 (459)
T ss_pred             ccchhccchheeeccccHHHHHHHHHHHHh----hcCCC-----------chhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            356677899999999999999999999998    33222           346789999999999999999999998854


Q ss_pred             C----CC----------------C---------HHHHHHHHHHHHHcCCHHHHHHHH
Q 006908          477 N----PA----------------H---------VKGLYRRGMAYMALGEFEEAQRDF  504 (626)
Q Consensus       477 d----p~----------------~---------~ka~~~~g~a~~~lg~~~eA~~~~  504 (626)
                      -    |.                |         ..|+...+.++++.++++.|.+.+
T Consensus       208 G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL  264 (459)
T KOG4340|consen  208 GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL  264 (459)
T ss_pred             hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence            2    21                1         457777888899999999988765

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=96.95  E-value=0.0021  Score=61.12  Aligned_cols=71  Identities=17%  Similarity=0.242  Sum_probs=67.2

Q ss_pred             hhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 006908          445 KRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (626)
Q Consensus       445 ~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~  515 (626)
                      .++.+++-+|..|-.+|-+.-|..+++++|.+.|.-+.++..+|.-+...|+|+.|.+.|+..+++||.++
T Consensus        63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~  133 (297)
T COG4785          63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN  133 (297)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch
Confidence            35778899999999999999999999999999999999999999999999999999999999999999873

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.93  E-value=0.012  Score=55.30  Aligned_cols=100  Identities=17%  Similarity=0.238  Sum_probs=81.1

Q ss_pred             HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006908          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (626)
Q Consensus       400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~  479 (626)
                      ...+.+..++..+++++|....+.++.     .+.|       ..+...+-.++|.+++.++.+++|+..+...-.   .
T Consensus        91 aaL~lAk~~ve~~~~d~A~aqL~~~l~-----~t~D-------e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~---~  155 (207)
T COG2976          91 AALELAKAEVEANNLDKAEAQLKQALA-----QTKD-------ENLKALAALRLARVQLQQKKADAALKTLDTIKE---E  155 (207)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHc-----cchh-------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc---c
Confidence            445678888999999999999999997     3333       245566788999999999999999988776532   3


Q ss_pred             CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          480 HVKG--LYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       480 ~~ka--~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      +..+  --.+|-++...|+-++|++.|.+|+..++++
T Consensus       156 ~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         156 SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence            3344  5678999999999999999999999998653

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.91  E-value=0.0034  Score=46.40  Aligned_cols=40  Identities=23%  Similarity=0.324  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 006908          449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRG  488 (626)
Q Consensus       449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g  488 (626)
                      +++.+|.+++++|+|..|..+|..+|+++|+|..|.-.+.
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~   42 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE   42 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence            6777999999999999999999999999999987765443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.87  E-value=0.0072  Score=54.36  Aligned_cols=68  Identities=16%  Similarity=0.237  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 006908          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (626)
Q Consensus       448 ~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~---~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~  515 (626)
                      ..+++.|...++.|+|.+|++.++.+...-|-.   ..|.+.++-+|+..++|++|++.+++-++|+|.+.
T Consensus        11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp   81 (142)
T PF13512_consen   11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP   81 (142)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence            467788999999999999999999999888754   68999999999999999999999999999999984

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=96.84  E-value=0.012  Score=64.21  Aligned_cols=124  Identities=15%  Similarity=0.116  Sum_probs=98.2

Q ss_pred             HhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHH-------------HHHhhhh---------hHHHHHHHHHHHH
Q 006908          402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG-------------KVFVGKR---------NLLHLNVAACLLK  459 (626)
Q Consensus       402 k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~-------------~~~~~~~---------~~~~~Nla~~~~k  459 (626)
                      ...+...+..|+...|.....+|..    .+|.+.+-+             +..+.+.         ..+|+.-+....-
T Consensus       588 lM~ake~w~agdv~~ar~il~~af~----~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~  663 (913)
T KOG0495|consen  588 LMYAKEKWKAGDVPAARVILDQAFE----ANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERY  663 (913)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHH----hCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHH
Confidence            3456778899999999999999998    555554322             1112222         2356666666677


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006908          460 LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (626)
Q Consensus       460 l~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~  530 (626)
                      +++.++|+..|+++|+..|...|-|..+|+++..+++.+.|...|...++..|.. .-.+-.|.++..+..
T Consensus       664 ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~-ipLWllLakleEk~~  733 (913)
T KOG0495|consen  664 LDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS-IPLWLLLAKLEEKDG  733 (913)
T ss_pred             hhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC-chHHHHHHHHHHHhc
Confidence            8999999999999999999999999999999999999999999999999999987 557777777766553

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.81  E-value=0.017  Score=56.51  Aligned_cols=69  Identities=16%  Similarity=0.292  Sum_probs=65.6

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       446 ~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      ...++.|.|.+|+-.++|..|...++++++.||.++-|..+.|.|++-+|+..+|++.++.++...|..
T Consensus       251 ~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  251 KIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             hHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            356889999999999999999999999999999999999999999999999999999999999999974

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.80  E-value=0.0021  Score=42.56  Aligned_cols=33  Identities=24%  Similarity=0.385  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 006908          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (626)
Q Consensus       448 ~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~  480 (626)
                      .+|+++|.+|.++|++++|+.++.++++++|+|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            478999999999999999999999999999854

...

>PRK15331 chaperone protein SicA; Provisional

Probab=96.78  E-value=0.022  Score=52.42  Aligned_cols=80  Identities=6%  Similarity=-0.126  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006908          449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (626)
Q Consensus       449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~  528 (626)
                      ..+..|.-++..|+|.+|...|.-...+||.|.+-++-+|.|+..+++|++|+..|-.|..+++++ +..-.....+.-.
T Consensus        39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d-p~p~f~agqC~l~  117 (165)
T PRK15331         39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND-YRPVFFTGQCQLL  117 (165)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC-CCccchHHHHHHH
Confidence            345578888999999999999999999999999999999999999999999999999999998765 3333344444333


Q ss_pred             H
Q 006908          529 R  529 (626)
Q Consensus       529 ~  529 (626)
                      +
T Consensus       118 l  118 (165)
T PRK15331        118 M  118 (165)
T ss_pred             h
Confidence            3

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=96.69  E-value=0.016  Score=63.31  Aligned_cols=102  Identities=14%  Similarity=0.111  Sum_probs=60.1

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      .+.+...|-.+...|+-++|..+-..+++    ..+.+           ..||.-+|..+..-++|.+|+.+|..||.++
T Consensus        41 geslAmkGL~L~~lg~~~ea~~~vr~glr----~d~~S-----------~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~  105 (700)
T KOG1156|consen   41 GESLAMKGLTLNCLGKKEEAYELVRLGLR----NDLKS-----------HVCWHVLGLLQRSDKKYDEAIKCYRNALKIE  105 (700)
T ss_pred             chhHHhccchhhcccchHHHHHHHHHHhc----cCccc-----------chhHHHHHHHHhhhhhHHHHHHHHHHHHhcC
Confidence            44445556666666666666666666665    22222           2355556666666666666666666666666


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      |+|..-|+-++....++++|+-....-.+.|++.|.+
T Consensus       106 ~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~  142 (700)
T KOG1156|consen  106 KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ  142 (700)
T ss_pred             CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh
Confidence            6666666666666666666666666666666666654

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=96.67  E-value=0.018  Score=50.81  Aligned_cols=83  Identities=16%  Similarity=0.280  Sum_probs=65.4

Q ss_pred             hHHHHHHHHHHHHcCC---HHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 006908          447 NLLHLNVAACLLKLGE---CRKSIEACNKVLD-ANPA-HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAA  521 (626)
Q Consensus       447 ~~~~~Nla~~~~kl~~---~~~A~~~~~~aL~-~dp~-~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~  521 (626)
                      ..+.+|+|.|+.+..+   ..+.+..++..+. -.|. .-..+|.++..|+++++|+.|+.+++..|+.+|+| ..+...
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n-~Qa~~L  110 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN-RQALEL  110 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc-HHHHHH
Confidence            4577889999988764   6677888888886 3443 46789999999999999999999999999999998 456655


Q ss_pred             HHHHHHHHH
Q 006908          522 LSKLKKQRQ  530 (626)
Q Consensus       522 l~~l~~~~~  530 (626)
                      -..++.++.
T Consensus       111 k~~ied~it  119 (149)
T KOG3364|consen  111 KETIEDKIT  119 (149)
T ss_pred             HHHHHHHHh
Confidence            555554443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=96.65  E-value=0.0062  Score=69.26  Aligned_cols=95  Identities=16%  Similarity=0.277  Sum_probs=88.2

Q ss_pred             HHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 006908          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (626)
Q Consensus       401 ~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~  480 (626)
                      +..+|-.+.+.+++..|+..|+.|++    ..|.+           ..+|..+|.+|...|+|..|++.+++|..++|.+
T Consensus       565 W~~rG~yyLea~n~h~aV~~fQsALR----~dPkD-----------~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s  629 (1238)
T KOG1127|consen  565 WVQRGPYYLEAHNLHGAVCEFQSALR----TDPKD-----------YNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS  629 (1238)
T ss_pred             hhhccccccCccchhhHHHHHHHHhc----CCchh-----------HHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence            44589999999999999999999999    78877           5689999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908          481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (626)
Q Consensus       481 ~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l  510 (626)
                      .-+-|..+.....+|+|.+|+..+...+..
T Consensus       630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~  659 (1238)
T KOG1127|consen  630 KYGRFKEAVMECDNGKYKEALDALGLIIYA  659 (1238)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999887765

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.63  E-value=0.015  Score=59.12  Aligned_cols=62  Identities=16%  Similarity=0.236  Sum_probs=36.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          453 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       453 la~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      +|.+++..-.|.+|++.|.++|.-+|+....-..+|.||.++.-|+-+.+.+.-.|..-|++
T Consensus       157 LAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdS  218 (557)
T KOG3785|consen  157 LASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDS  218 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCc
Confidence            44445555556666666666666555555555556666666666666666666666666654

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.58  E-value=0.015  Score=63.36  Aligned_cols=103  Identities=17%  Similarity=0.220  Sum_probs=87.9

Q ss_pred             HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006908          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (626)
Q Consensus       399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp  478 (626)
                      ..+.+.|..+|+..+|..|++.|...+.++..    | +..    ...+.+.-|++.||+++.+.+.|.+++.+|-+.||
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~----D-~~~----~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~  425 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIIS----D-NYS----DRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDR  425 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccc----h-hhh----hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc
Confidence            35668999999999999999999999995442    2 111    12267888999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908          479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (626)
Q Consensus       479 ~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l  510 (626)
                      .++-.-+..-++...-+.-++|+..+.+....
T Consensus       426 ~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  426 QSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             ccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence            99999999999999999999999998877655

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.56  E-value=0.0038  Score=40.86  Aligned_cols=31  Identities=32%  Similarity=0.589  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908          483 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (626)
Q Consensus       483 a~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~  513 (626)
                      |+|++|.++..+|++++|+..|+++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            6677777777777777777777777777665

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.55  E-value=0.054  Score=52.31  Aligned_cols=104  Identities=21%  Similarity=0.231  Sum_probs=77.9

Q ss_pred             Hhhhchhhcc-ccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 006908          402 RVTGNRLFKE-GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (626)
Q Consensus       402 k~~Gn~~f~~-g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~  480 (626)
                      ...|..+-.. .++++|+.+|++|-+++..-         +.......|++..|.---.+++|.+|+..|+++....-+|
T Consensus       117 ~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e---------es~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n  187 (288)
T KOG1586|consen  117 IEIAEIYESDLQDFEKAIAHYEQAAEYYKGE---------ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN  187 (288)
T ss_pred             hhHHHHHhhhHHHHHHHHHHHHHHHHHHcch---------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            3444433333 58999999999999865421         1223345688888888888999999999999987654433


Q ss_pred             ------HHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          481 ------VKGL-YRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       481 ------~ka~-~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                            +|-| +..|.||+...+.-.|...+++..+++|..
T Consensus       188 ~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F  228 (288)
T KOG1586|consen  188 NLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF  228 (288)
T ss_pred             hHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence                  5555 456888888899999999999999999987

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.52  E-value=0.059  Score=52.65  Aligned_cols=101  Identities=24%  Similarity=0.266  Sum_probs=75.9

Q ss_pred             hchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhC
Q 006908          405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE-------CRKSIEACNKVLDAN  477 (626)
Q Consensus       405 Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~-------~~~A~~~~~~aL~~d  477 (626)
                      +..+-....++.|+..|.-||-.........        ...+.+++.+|.+|..+++       +..|+..|.+|++..
T Consensus        84 ~~~~~~~Rt~~~ai~~YkLAll~~~~~~~~~--------s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e  155 (214)
T PF09986_consen   84 PRDFSGERTLEEAIESYKLALLCAQIKKEKP--------SKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENE  155 (214)
T ss_pred             cCCCCCCCCHHHHHHHHHHHHHHHHHhCCCH--------HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhC
Confidence            3355667789999999999997544322221        2457789999999999998       455666666666544


Q ss_pred             C------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908          478 P------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (626)
Q Consensus       478 p------~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~  513 (626)
                      .      +....+|.+|..++.+|++++|+.+|.+++..--.
T Consensus       156 ~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~  197 (214)
T PF09986_consen  156 DFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA  197 (214)
T ss_pred             cCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence            2      23688999999999999999999999999987433

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.51  E-value=0.02  Score=57.94  Aligned_cols=68  Identities=16%  Similarity=0.190  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 006908          449 LHLNVAACLLKLGECRKSIEACNKVLDAN---PA-HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP  516 (626)
Q Consensus       449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~d---p~-~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~  516 (626)
                      -|---|.-|+|.++|..|+..|++.|...   |+ |+-.|.|||-|+..+|+|..|+.++.+|+.++|.+.+
T Consensus        83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~K  154 (390)
T KOG0551|consen   83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLK  154 (390)
T ss_pred             HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence            34446888999999999999999999875   33 5678999999999999999999999999999999854

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.46  E-value=0.018  Score=58.82  Aligned_cols=117  Identities=22%  Similarity=0.230  Sum_probs=89.7

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCC---------CCChhH----HHH---------------HhhhhhH
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN---------PQDDEE----GKV---------------FVGKRNL  448 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~---------p~~~ee----~~~---------------~~~~~~~  448 (626)
                      ++.+..+.|..+|.+.++.+|+..+++.|..+....         +.-..+    .++               -......
T Consensus         5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e   84 (518)
T KOG1941|consen    5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE   84 (518)
T ss_pred             hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566777899999999999999999999887554321         110000    000               1123456


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908          449 LHLNVAACLLKLGECRKSIEACNKVLDANPAH-----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (626)
Q Consensus       449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~-----~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~  513 (626)
                      +|.|++..+-++.+|.+++.+|+-.+.+-...     ..++.-+|+||..++.|+.|++.|++|++...+
T Consensus        85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~  154 (518)
T KOG1941|consen   85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHN  154 (518)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhc
Confidence            79999999999999999999999999875433     367888999999999999999999999998544

>smart00028 TPR Tetratricopeptide repeats

Probab=96.41  E-value=0.005  Score=39.07  Aligned_cols=32  Identities=34%  Similarity=0.720  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908          482 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (626)
Q Consensus       482 ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~  513 (626)
                      .+++++|.++..++++++|+..|+++++++|+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            35666666666666666666666666666654

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.38  E-value=0.015  Score=59.18  Aligned_cols=87  Identities=21%  Similarity=0.284  Sum_probs=68.2

Q ss_pred             hhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 006908          407 RLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYR  486 (626)
Q Consensus       407 ~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~  486 (626)
                      .+..+.+|.-|+.+.+-.+.    +   +.||+       .++-.-+|.|++.+|+|++|+..|+-+.+-+..+.+.+.+
T Consensus        31 dfls~rDytGAislLefk~~----~---~~EEE-------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vn   96 (557)
T KOG3785|consen   31 DFLSNRDYTGAISLLEFKLN----L---DREEE-------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVN   96 (557)
T ss_pred             HHHhcccchhHHHHHHHhhc----c---chhhh-------HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchh
Confidence            34556788888887766554    1   11221       2344558999999999999999999999988788999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHH
Q 006908          487 RGMAYMALGEFEEAQRDFEMM  507 (626)
Q Consensus       487 ~g~a~~~lg~~~eA~~~~~kA  507 (626)
                      +|.|++-+|.|.+|...-.+|
T Consensus        97 LAcc~FyLg~Y~eA~~~~~ka  117 (557)
T KOG3785|consen   97 LACCKFYLGQYIEAKSIAEKA  117 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHhhC
Confidence            999999999999998876654

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.33  E-value=0.0065  Score=41.03  Aligned_cols=28  Identities=25%  Similarity=0.455  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908          483 GLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (626)
Q Consensus       483 a~~~~g~a~~~lg~~~eA~~~~~kAl~l  510 (626)
                      ||.++|.+|..+|+|++|+..|+++|.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            5788899999999999999999997655

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.29  E-value=0.03  Score=57.19  Aligned_cols=99  Identities=21%  Similarity=0.214  Sum_probs=78.8

Q ss_pred             hhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----
Q 006908          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP----  478 (626)
Q Consensus       403 ~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp----  478 (626)
                      -.|+.+...+.|++|++.|++|+++-....  |       .-+...++..++..|-.+++|++|+-+..+|+++-.    
T Consensus       127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~--D-------~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l  197 (518)
T KOG1941|consen  127 SMGNAHLGLSVFQKALESFEKALRYAHNND--D-------AMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGL  197 (518)
T ss_pred             hHHHHhhhHHHHHHHHHHHHHHHHHhhccC--C-------ceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCc
Confidence            478888888999999999999999644322  1       123356788899999999999999999999887632    


Q ss_pred             --CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908          479 --AH----VKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (626)
Q Consensus       479 --~~----~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l  510 (626)
                        -+    .-++|+++.++..+|++-+|.++++.|.++
T Consensus       198 ~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl  235 (518)
T KOG1941|consen  198 KDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL  235 (518)
T ss_pred             CchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence              12    347899999999999999999999998776

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.29  E-value=0.025  Score=48.33  Aligned_cols=103  Identities=13%  Similarity=0.183  Sum_probs=73.7

Q ss_pred             hhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHH----HHHcCCHHHHHHHHHHHHHhCCC
Q 006908          404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC----LLKLGECRKSIEACNKVLDANPA  479 (626)
Q Consensus       404 ~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~----~~kl~~~~~A~~~~~~aL~~dp~  479 (626)
                      .+..+|.+|++-+|++..+..+.    .+..+...+ .++.+...++..+|..    -.|.--...|++++.++..+.|.
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~----~h~~~~~~~-~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~   76 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLIS----RHGEDESSW-LLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPD   76 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHH----HccCCCchH-HHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChh
Confidence            46788999999999999999988    444432211 2233333333333321    11112255688999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006908          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (626)
Q Consensus       480 ~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~  511 (626)
                      .+..+|.+|+-+.....|++++.-.+++|.+.
T Consensus        77 ~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   77 SAHSLFELASQLGSVKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence            99999999999888888999999999998763

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.27  E-value=0.0041  Score=41.45  Aligned_cols=34  Identities=26%  Similarity=0.434  Sum_probs=29.8

Q ss_pred             HHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHH
Q 006908          420 KYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIE  468 (626)
Q Consensus       420 ~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~  468 (626)
                      +|++||+    ++|.+           ..+|+|+|.+|...|++++|++
T Consensus         1 ~y~kAie----~~P~n-----------~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIE----LNPNN-----------AEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHH----HCCCC-----------HHHHHHHHHHHHHCcCHHhhcC
Confidence            4889999    78888           5699999999999999999863

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.22  E-value=0.059  Score=58.50  Aligned_cols=112  Identities=18%  Similarity=0.228  Sum_probs=82.1

Q ss_pred             HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHH--------------------hhhhhHHHHHHHHHHHH
Q 006908          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVF--------------------VGKRNLLHLNVAACLLK  459 (626)
Q Consensus       400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~--------------------~~~~~~~~~Nla~~~~k  459 (626)
                      .+.-+|..+|+.++|++|+..|+..++    -+.++.++....                    ..-....++|.|..+..
T Consensus       112 ll~L~AQvlYrl~~ydealdiY~~L~k----n~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~  187 (652)
T KOG2376|consen  112 LLELRAQVLYRLERYDEALDIYQHLAK----NNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIE  187 (652)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHh----cCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHh
Confidence            344588899999999999999998876    222222211100                    00123478999999999


Q ss_pred             cCCHHHHHHHHHHHHHhC-------CCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 006908          460 LGECRKSIEACNKVLDAN-------PAH--------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (626)
Q Consensus       460 l~~~~~A~~~~~~aL~~d-------p~~--------~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~  515 (626)
                      .|+|.+|++.+..|+.+.       ..+        .-....++.++..+|+-++|...|...++.+|.+.
T Consensus       188 ~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~  258 (652)
T KOG2376|consen  188 NGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADE  258 (652)
T ss_pred             cccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence            999999999999995442       111        23566789999999999999999999999887653

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.21  E-value=0.075  Score=57.71  Aligned_cols=120  Identities=21%  Similarity=0.277  Sum_probs=83.2

Q ss_pred             HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHH-----------------HHHhh-----hhhHHHHHHHHH
Q 006908          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG-----------------KVFVG-----KRNLLHLNVAAC  456 (626)
Q Consensus       399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~-----------------~~~~~-----~~~~~~~Nla~~  456 (626)
                      ..+...-|.+-+.++|++|+....+.|.    ..|++....                 ..+..     ......+-.|.|
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~----~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc   88 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILS----IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYC   88 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHh----cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHH
Confidence            3444555666778888888888888777    444432210                 00000     111223678999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHH
Q 006908          457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS-EPDATAALSKL  525 (626)
Q Consensus       457 ~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~-~~~~~~~l~~l  525 (626)
                      +++++..++|+.+++   -+++...+.+..+|+.++++++|++|+..|+..++-+-++ +..++.++..+
T Consensus        89 ~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~  155 (652)
T KOG2376|consen   89 EYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV  155 (652)
T ss_pred             HHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence            999999999999988   5677788999999999999999999999999998865442 23344444433

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=96.17  E-value=0.0063  Score=64.49  Aligned_cols=65  Identities=18%  Similarity=0.179  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       450 ~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      +-|-|.-.++-+.|+.|+..|.+||+++|+++--+-+|++|+.+.++|..|+.++.+|++++|..
T Consensus         7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~   71 (476)
T KOG0376|consen    7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY   71 (476)
T ss_pred             hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh
Confidence            44567778899999999999999999999999999999999999999999999999999999975

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.15  E-value=0.0087  Score=57.45  Aligned_cols=60  Identities=25%  Similarity=0.451  Sum_probs=55.9

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 006908          456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (626)
Q Consensus       456 ~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~  515 (626)
                      ...+.++...|.+.+.++|++-|.+...|||+|....+.|+++.|.+.|++.|+++|.+.
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            345678999999999999999999999999999999999999999999999999999863

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=96.03  E-value=0.061  Score=58.98  Aligned_cols=91  Identities=13%  Similarity=0.011  Sum_probs=79.1

Q ss_pred             hccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 006908          409 FKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRG  488 (626)
Q Consensus       409 f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g  488 (626)
                      .-.++.++|+++++.||+.++    .           ...+|+.+|+++-.+++.+.|...|..-+...|.++.-|..++
T Consensus       662 r~ld~~eeA~rllEe~lk~fp----~-----------f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLa  726 (913)
T KOG0495|consen  662 RYLDNVEEALRLLEEALKSFP----D-----------FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLA  726 (913)
T ss_pred             HHhhhHHHHHHHHHHHHHhCC----c-----------hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHH
Confidence            345566777777777777333    2           2468999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          489 MAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       489 ~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      ..--..|..-.|+..|.++...+|+|
T Consensus       727 kleEk~~~~~rAR~ildrarlkNPk~  752 (913)
T KOG0495|consen  727 KLEEKDGQLVRARSILDRARLKNPKN  752 (913)
T ss_pred             HHHHHhcchhhHHHHHHHHHhcCCCc
Confidence            99999999999999999999999998

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.99  E-value=0.012  Score=39.72  Aligned_cols=28  Identities=21%  Similarity=0.233  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908          449 LHLNVAACLLKLGECRKSIEACNKVLDA  476 (626)
Q Consensus       449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~  476 (626)
                      +|.|+|.+|.++|+|++|+.+|.++|.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4789999999999999999999997654

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.93  E-value=0.012  Score=38.33  Aligned_cols=32  Identities=25%  Similarity=0.506  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 006908          449 LHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (626)
Q Consensus       449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~  480 (626)
                      +++++|.|+.++|++.+|+..+++++...|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            57889999999999999999999999999874

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.92  E-value=0.042  Score=60.44  Aligned_cols=100  Identities=19%  Similarity=0.264  Sum_probs=79.6

Q ss_pred             HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006908          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (626)
Q Consensus       400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~  479 (626)
                      -+...|..+..+|+.++|+..|++|+.    .    ..+   +.++...++..+|.|++-+.+|.+|..++.+.++.+ +
T Consensus       269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~----~----q~~---~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~  336 (468)
T PF10300_consen  269 FLFFEGRLERLKGNLEEAIESFERAIE----S----QSE---WKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-K  336 (468)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhcc----c----hhh---HHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-c
Confidence            355678888899999999999999885    1    122   344556789999999999999999999999998865 4


Q ss_pred             CHHHH--HHHHHHHHHcCCH-------HHHHHHHHHHHhcC
Q 006908          480 HVKGL--YRRGMAYMALGEF-------EEAQRDFEMMMKVD  511 (626)
Q Consensus       480 ~~ka~--~~~g~a~~~lg~~-------~eA~~~~~kAl~l~  511 (626)
                      +.+|+  |-.|.|+..+++.       ++|...|.++-.+-
T Consensus       337 WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  337 WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence            56664  5578899999999       88888888776553

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=95.92  E-value=0.2  Score=52.08  Aligned_cols=123  Identities=11%  Similarity=0.089  Sum_probs=91.2

Q ss_pred             hHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006908          393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK  472 (626)
Q Consensus       393 e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~  472 (626)
                      -+...+......|-.-+-.|+|.+|.+...++-+    ..+           ....+|.--|.+...+|++..|-.+..+
T Consensus        79 rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae----~~e-----------~p~l~~l~aA~AA~qrgd~~~an~yL~e  143 (400)
T COG3071          79 RKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAE----HGE-----------QPVLAYLLAAEAAQQRGDEDRANRYLAE  143 (400)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhh----cCc-----------chHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            4566788888889888899999999999998766    111           1234666667777888888888888888


Q ss_pred             HHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 006908          473 VLDANP-AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQE  531 (626)
Q Consensus       473 aL~~dp-~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~  531 (626)
                      +-+..+ ++.-.+..++..+...|+++.|...+.++++..|.+ +.+.+...++......
T Consensus       144 aae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~-~~vlrLa~r~y~~~g~  202 (400)
T COG3071         144 AAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRH-PEVLRLALRAYIRLGA  202 (400)
T ss_pred             HhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCC-hHHHHHHHHHHHHhcc
Confidence            888733 356677888888888888888888888888888887 4555555554444433

>smart00028 TPR Tetratricopeptide repeats

Probab=95.83  E-value=0.015  Score=36.73  Aligned_cols=33  Identities=27%  Similarity=0.471  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 006908          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (626)
Q Consensus       448 ~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~  480 (626)
                      .++.++|.|+..++++..|+..+.+++.++|.+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            368899999999999999999999999998853

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=95.82  E-value=0.037  Score=55.34  Aligned_cols=69  Identities=19%  Similarity=0.203  Sum_probs=63.3

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 006908          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (626)
Q Consensus       447 ~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~  515 (626)
                      +.+-+|.|.-..+.|+.++|...+..||.++|.++.++.+.|+....-++.-+|-.+|-+||.++|.|.
T Consensus       116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns  184 (472)
T KOG3824|consen  116 AILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS  184 (472)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence            345566777788999999999999999999999999999999999999999999999999999999984

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=95.70  E-value=0.076  Score=49.52  Aligned_cols=64  Identities=22%  Similarity=0.305  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006908          463 CRKSIEACNKVLDANPAHVKGLYRRGMAYMALGE----------FEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (626)
Q Consensus       463 ~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~----------~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~  527 (626)
                      |+.|.+.+..+...||.++.+++|-|-|+..|.+          +++|+.-|+.||.++|+. .++.-.|.....
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~-hdAlw~lGnA~t   80 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK-HDALWCLGNAYT   80 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch-HHHHHHHHHHHH
Confidence            7889999999999999999999999999998754          467889999999999996 566666665543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=95.56  E-value=0.29  Score=52.37  Aligned_cols=110  Identities=14%  Similarity=0.040  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 006908          414 FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA  493 (626)
Q Consensus       414 ~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~  493 (626)
                      ...-..+|+.|+.    ..+.|           ..+|++-..-..|.+.|.+....|.++|...|+++..|...|.=.+.
T Consensus        87 ~~rIv~lyr~at~----rf~~D-----------~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe  151 (568)
T KOG2396|consen   87 PNRIVFLYRRATN----RFNGD-----------VKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFE  151 (568)
T ss_pred             HHHHHHHHHHHHH----hcCCC-----------HHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHh
Confidence            3445677888888    33334           45777766666677779999999999999999999999999998888


Q ss_pred             cCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006908          494 LGE-FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQ  539 (626)
Q Consensus       494 lg~-~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~  539 (626)
                      .+. .+.|++.|.++|..+|++ +.++.+.-++.-.........+..
T Consensus       152 ~n~ni~saRalflrgLR~npds-p~Lw~eyfrmEL~~~~Kl~~rr~~  197 (568)
T KOG2396|consen  152 INLNIESARALFLRGLRFNPDS-PKLWKEYFRMELMYAEKLRNRREE  197 (568)
T ss_pred             hccchHHHHHHHHHHhhcCCCC-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            877 999999999999999998 778887777665544444444444

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.53  E-value=0.19  Score=47.32  Aligned_cols=95  Identities=31%  Similarity=0.510  Sum_probs=72.3

Q ss_pred             hhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHH
Q 006908          407 RLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA-HVKGLY  485 (626)
Q Consensus       407 ~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~-~~ka~~  485 (626)
                      .++..+++..|...|.+++.    ..+..        ......+.+++..+...+++..|+..+.+++...+. ...+++
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~----~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  206 (291)
T COG0457         139 ALYELGDYEEALELYEKALE----LDPEL--------NELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALL  206 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHh----cCCCc--------cchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHH
Confidence            78888999999999999866    33310        001234455555577788888888888888888888 688888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908          486 RRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (626)
Q Consensus       486 ~~g~a~~~lg~~~eA~~~~~kAl~l~P~  513 (626)
                      .++.++...+.+++|+..+.+++...|.
T Consensus       207 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~  234 (291)
T COG0457         207 NLGLLYLKLGKYEEALEYYEKALELDPD  234 (291)
T ss_pred             HhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence            8888888888888888888888888876

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=95.38  E-value=0.09  Score=52.69  Aligned_cols=84  Identities=20%  Similarity=0.235  Sum_probs=69.9

Q ss_pred             HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (626)
Q Consensus       395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL  474 (626)
                      ..+|......+....+.|+.++|..+|..|+.    +.|.+++           ++..+|...-.-++.-+|-.+|.+||
T Consensus       113 ~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAla----laP~~p~-----------~L~e~G~f~E~~~~iv~ADq~Y~~AL  177 (472)
T KOG3824|consen  113 VKEAILALKAAGRSRKDGKLEKAMTLFEHALA----LAPTNPQ-----------ILIEMGQFREMHNEIVEADQCYVKAL  177 (472)
T ss_pred             hHHHHHHHHHHHHHHhccchHHHHHHHHHHHh----cCCCCHH-----------HHHHHhHHHHhhhhhHhhhhhhheee
Confidence            44555555677788999999999999999999    7887743           66677887777788899999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHH
Q 006908          475 DANPAHVKGLYRRGMAYMA  493 (626)
Q Consensus       475 ~~dp~~~ka~~~~g~a~~~  493 (626)
                      .++|.|.+|+.+|++..--
T Consensus       178 tisP~nseALvnR~RT~pl  196 (472)
T KOG3824|consen  178 TISPGNSEALVNRARTTPL  196 (472)
T ss_pred             eeCCCchHHHhhhhccchH
Confidence            9999999999999876543

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=95.33  E-value=0.12  Score=57.19  Aligned_cols=77  Identities=19%  Similarity=0.211  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908          449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (626)
Q Consensus       449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~  526 (626)
                      +++-.+.++...|++++|++++...-..-.+....+-.+|.+++.+|++++|...|+..+..+|+| ......|..+.
T Consensus         6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn-~~Yy~~L~~~~   82 (517)
T PF12569_consen    6 LLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDN-YDYYRGLEEAL   82 (517)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-HHHHHHHHHHH
Confidence            334456777888888888888888776667778888888888888888888888888888888887 34444444443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.32  E-value=0.37  Score=49.18  Aligned_cols=122  Identities=13%  Similarity=-0.007  Sum_probs=89.5

Q ss_pred             CCChhhHHHHHHHHHhhhchhhccc-cHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHH
Q 006908          388 GLSFDGIMDEAEKIRVTGNRLFKEG-KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS  466 (626)
Q Consensus       388 ~~~~~e~~~~a~~~k~~Gn~~f~~g-~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A  466 (626)
                      .++++.....+..+.+-|..+++++ +|+.|+...++|+++++.. +..........+++..++..++.||+..+.++..
T Consensus        25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~-~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~  103 (278)
T PF08631_consen   25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKP-GKMDKLSPDGSELRLSILRLLANAYLEWDTYESV  103 (278)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhh-hhccccCCcHHHHHHHHHHHHHHHHHcCCChHHH
Confidence            3566777889999999999999999 9999999999999987541 1111111224567888999999999999987654


Q ss_pred             HHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006908          467 IEACNKVLDA----NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (626)
Q Consensus       467 ~~~~~~aL~~----dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~  511 (626)
                      .. |..+++.    -|+.+-.++..=.++...++.+++.+.+.+++.--
T Consensus       104 ~k-a~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~  151 (278)
T PF08631_consen  104 EK-ALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV  151 (278)
T ss_pred             HH-HHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence            44 4444433    36666666555556666888898888888888753

It is also involved in sporulation [].

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=95.31  E-value=0.11  Score=51.23  Aligned_cols=68  Identities=15%  Similarity=0.172  Sum_probs=62.8

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       447 ~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~---~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      +..++|-|...+..|+|.+|+..++.+....|.+   .++.+.++.|+++.++|++|+..+++-+.+.|.+
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~  104 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTH  104 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Confidence            5578889999999999999999999999887754   6899999999999999999999999999999987

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=95.30  E-value=0.15  Score=53.08  Aligned_cols=110  Identities=22%  Similarity=0.208  Sum_probs=77.3

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      .+.....+..+...|+++.|.+.-..+++     ...++           .++  +=.-.++.+++..=++..++.+...
T Consensus       263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk-----~~~D~-----------~L~--~~~~~l~~~d~~~l~k~~e~~l~~h  324 (400)
T COG3071         263 PELVVAYAERLIRLGDHDEAQEIIEDALK-----RQWDP-----------RLC--RLIPRLRPGDPEPLIKAAEKWLKQH  324 (400)
T ss_pred             hhHHHHHHHHHHHcCChHHHHHHHHHHHH-----hccCh-----------hHH--HHHhhcCCCCchHHHHHHHHHHHhC
Confidence            33344556667788889999999888887     11111           111  1122356778888888888888888


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006908          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (626)
Q Consensus       478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~  527 (626)
                      |+++..++.+|+.+++.+.|.+|..+|+.|++..|+.  .....+..+..
T Consensus       325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~--~~~~~la~~~~  372 (400)
T COG3071         325 PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA--SDYAELADALD  372 (400)
T ss_pred             CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh--hhHHHHHHHHH
Confidence            8888888888888888888888888888888888873  34444444433

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.24  E-value=0.0063  Score=61.77  Aligned_cols=59  Identities=22%  Similarity=0.345  Sum_probs=54.9

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 006908          457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (626)
Q Consensus       457 ~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~  515 (626)
                      .+..|.++.|++.|..+|.++|.++--|-.|+.++++|++...|+++|..|++++|+..
T Consensus       124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa  182 (377)
T KOG1308|consen  124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSA  182 (377)
T ss_pred             HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccc
Confidence            34567799999999999999999999999999999999999999999999999999863

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=95.23  E-value=0.21  Score=55.58  Aligned_cols=120  Identities=10%  Similarity=0.048  Sum_probs=86.9

Q ss_pred             HHHHHhhhchhhcc---ccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcC--------CHHHH
Q 006908          398 AEKIRVTGNRLFKE---GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG--------ECRKS  466 (626)
Q Consensus       398 a~~~k~~Gn~~f~~---g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~--------~~~~A  466 (626)
                      |-.+..+|..++.+   +.+..|+.+|++|+.    +.|++           +.+|.-+|.||....        +...|
T Consensus       339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~----ldP~~-----------a~a~A~la~~~~~~~~~~~~~~~~l~~a  403 (517)
T PRK10153        339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILK----SEPDF-----------TYAQAEKALADIVRHSQQPLDEKQLAAL  403 (517)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence            44445566655544   458899999999999    78876           445555666665542        24455


Q ss_pred             HHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 006908          467 IEACNKVLDA--NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVES  534 (626)
Q Consensus       467 ~~~~~~aL~~--dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~  534 (626)
                      .....+++.+  +|..+.+|.-+|..+...|++++|...|++|+.++|+  ..+...+..+.....+.++
T Consensus       404 ~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps--~~a~~~lG~~~~~~G~~~e  471 (517)
T PRK10153        404 STELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS--WLNYVLLGKVYELKGDNRL  471 (517)
T ss_pred             HHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHcCCHHH
Confidence            6666666664  7888899999999999999999999999999999995  3567777766554444333

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.21  E-value=0.2  Score=47.11  Aligned_cols=103  Identities=30%  Similarity=0.409  Sum_probs=83.8

Q ss_pred             HHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHH-HHHHcCCHHHHHHHHHHHH
Q 006908          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA-CLLKLGECRKSIEACNKVL  474 (626)
Q Consensus       396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~-~~~kl~~~~~A~~~~~~aL  474 (626)
                      .....+...|......+++..|+..+.+++.    ..+.+           .......+. ++..++++..|+..+.+++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-----------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  157 (291)
T COG0457          93 NLAEALLNLGLLLEALGKYEEALELLEKALA----LDPDP-----------DLAEALLALGALYELGDYEEALELYEKAL  157 (291)
T ss_pred             chHHHHHHHHHHHHHHhhHHHHHHHHHHHHc----CCCCc-----------chHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3455667788888888999999999999998    33322           112233344 8999999999999999999


Q ss_pred             HhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908          475 DANP---AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (626)
Q Consensus       475 ~~dp---~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~  513 (626)
                      ..+|   .....++.++..+...++++.|+..+.+++...+.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  199 (291)
T COG0457         158 ELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD  199 (291)
T ss_pred             hcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence            9887   46778888888899999999999999999999988

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.14  E-value=0.57  Score=50.41  Aligned_cols=125  Identities=13%  Similarity=0.123  Sum_probs=85.6

Q ss_pred             CCCCChhhHHHHHHHHHhhhc------hhhc---cccHHHHHHHHHHHHHhcccCCCCCh------hHHHHH----hhhh
Q 006908          386 WTGLSFDGIMDEAEKIRVTGN------RLFK---EGKFELAKAKYEKVLRDFNHVNPQDD------EEGKVF----VGKR  446 (626)
Q Consensus       386 ~~~~~~~e~~~~a~~~k~~Gn------~~f~---~g~~~~A~~~y~~al~~l~~~~p~~~------ee~~~~----~~~~  446 (626)
                      |.+.+.+.+++.|.+-.+.-.      .+..   .....+|..+|++|++.-+.....+.      ...+..    ....
T Consensus       179 WRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~  258 (539)
T PF04184_consen  179 WRERNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVL  258 (539)
T ss_pred             HhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchh
Confidence            556677777777665443221      1111   22468889999998874332211110      001111    1123


Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA--HVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (626)
Q Consensus       447 ~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~--~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l  510 (626)
                      .-+...+|+|..++|+.++|++.+...++..|.  +...++++-.++..++.|.++.+.+.+.=.+
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi  324 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI  324 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence            445678999999999999999999999988775  6779999999999999999999999986544

The molecular function of this protein is uncertain.

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.04  E-value=0.17  Score=50.42  Aligned_cols=71  Identities=23%  Similarity=0.323  Sum_probs=65.7

Q ss_pred             hhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          444 GKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       444 ~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      .....+..|+=..+...++|..|..+..+.|.++|.++-.+--+|.+|.++|.+.-|+.++...++..|+.
T Consensus       178 ~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~  248 (269)
T COG2912         178 EILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDD  248 (269)
T ss_pred             HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCc
Confidence            34456778888899999999999999999999999999999999999999999999999999999999985

>PRK04841 transcriptional regulator MalT; Provisional

Probab=95.00  E-value=0.14  Score=61.43  Aligned_cols=101  Identities=16%  Similarity=0.053  Sum_probs=70.7

Q ss_pred             HhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--
Q 006908          402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA--  479 (626)
Q Consensus       402 k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~--  479 (626)
                      ...|..++..|+++.|...|.+++.........         .....++.++|.+++..|++..|...+.+++.+-..  
T Consensus       495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~---------~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~  565 (903)
T PRK04841        495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVY---------HYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQH  565 (903)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcch---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Confidence            345555566677777777777766643322111         112346788999999999999999999999876211  


Q ss_pred             ------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006908          480 ------HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (626)
Q Consensus       480 ------~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~  511 (626)
                            ..-++..+|.++...|++++|...+.+++.+.
T Consensus       566 ~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~  603 (903)
T PRK04841        566 LEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL  603 (903)
T ss_pred             cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence                  23345678889999999999999999998863

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.94  E-value=0.051  Score=57.59  Aligned_cols=120  Identities=16%  Similarity=0.109  Sum_probs=83.7

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD-A  476 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~-~  476 (626)
                      +..+..+.+..|-.|+|.+|.+.....--.   ..+..--   .-.-....+++|+|-++++++.|.-++.+|.+||+ .
T Consensus       240 ~~~l~LKsq~eY~~gn~~kA~KlL~~sni~---~~~g~~~---T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~  313 (696)
T KOG2471|consen  240 SMALLLKSQLEYAHGNHPKAMKLLLVSNIH---KEAGGTI---TPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNS  313 (696)
T ss_pred             cHHHHHHHHHHHHhcchHHHHHHHHhcccc---cccCccc---cchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHH
Confidence            344556677778888888888776542210   1111000   00112345679999999999999999999999995 2


Q ss_pred             C--------C---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 006908          477 N--------P---------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK  524 (626)
Q Consensus       477 d--------p---------~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~  524 (626)
                      +        |         ....-+|+.|..|..+|+.-.|.++|.+|...-..| +.+|--|+.
T Consensus       314 c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n-PrlWLRlAE  377 (696)
T KOG2471|consen  314 CSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN-PRLWLRLAE  377 (696)
T ss_pred             HHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC-cHHHHHHHH
Confidence            1        1         335689999999999999999999999999987776 455544443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=94.93  E-value=0.15  Score=42.39  Aligned_cols=65  Identities=25%  Similarity=0.338  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHH
Q 006908          466 SIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS-EPDATAALSKLKKQRQ  530 (626)
Q Consensus       466 A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~-~~~~~~~l~~l~~~~~  530 (626)
                      .+..+.++++.+|++..+.|.+|.+++..|++++|++.|-.++..+++. ...+++.+-.+-..+.
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg   72 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLG   72 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcC
Confidence            4567888999999999999999999999999999999999999998865 2346565555544444

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.84  E-value=0.31  Score=46.17  Aligned_cols=102  Identities=18%  Similarity=0.148  Sum_probs=77.5

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~  476 (626)
                      .-..+.+.|+.+++.|+++.|++.|.++..+...            ......+++++-.+.+..++|..+..+..+|-.+
T Consensus        35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~------------~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~  102 (177)
T PF10602_consen   35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTS------------PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL  102 (177)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            3456778999999999999999999998875322            2345668889999999999999999999998665


Q ss_pred             CC--CCH--H--HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908          477 NP--AHV--K--GLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (626)
Q Consensus       477 dp--~~~--k--a~~~~g~a~~~lg~~~eA~~~~~kAl~l  510 (626)
                      -.  .++  +  .....|.+++..++|..|-..|-.++.-
T Consensus       103 ~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t  142 (177)
T PF10602_consen  103 IEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST  142 (177)
T ss_pred             HhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence            32  222  2  2333567777889999998888776543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.80  E-value=0.84  Score=46.02  Aligned_cols=98  Identities=19%  Similarity=0.301  Sum_probs=75.8

Q ss_pred             HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH-------
Q 006908          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK-------  472 (626)
Q Consensus       400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~-------  472 (626)
                      ....++..+...+++..|...|..++.    ..|.+           ..+..-+|.||+.+|+.+.|...+..       
T Consensus       136 ~~~~~~~~~~~~e~~~~a~~~~~~al~----~~~~~-----------~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~  200 (304)
T COG3118         136 EALAEAKELIEAEDFGEAAPLLKQALQ----AAPEN-----------SEAKLLLAECLLAAGDVEAAQAILAALPLQAQD  200 (304)
T ss_pred             HHHHHhhhhhhccchhhHHHHHHHHHH----hCccc-----------chHHHHHHHHHHHcCChHHHHHHHHhCcccchh
Confidence            345678889999999999999999999    44444           23566688888888888665443332       


Q ss_pred             ---------------------------HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 006908          473 ---------------------------VLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK  512 (626)
Q Consensus       473 ---------------------------aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P  512 (626)
                                                 .+..||++..+-|.+|..+...|++++|++.|-..++.|-
T Consensus       201 ~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~  267 (304)
T COG3118         201 KAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR  267 (304)
T ss_pred             hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence                                       2244688999999999999999999999998888887754

>PRK04841 transcriptional regulator MalT; Provisional

Probab=94.79  E-value=0.2  Score=60.12  Aligned_cols=104  Identities=15%  Similarity=0.169  Sum_probs=80.2

Q ss_pred             HHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--
Q 006908          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP--  478 (626)
Q Consensus       401 ~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp--  478 (626)
                      +...|..++..|++..|...+.+++..........       ......++.++|.+++..|++++|...+.+++.+..  
T Consensus       534 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~  606 (903)
T PRK04841        534 LLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQ-------LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY  606 (903)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc-------ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc
Confidence            34557778899999999999999998654322111       011233567889999999999999999999987632  


Q ss_pred             ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006908          479 ---AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (626)
Q Consensus       479 ---~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~  511 (626)
                         ..+.++..+|.++...|++++|...+.+++.+.
T Consensus       607 ~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~  642 (903)
T PRK04841        607 QPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLL  642 (903)
T ss_pred             CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence               235677789999999999999999999998763

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.68  E-value=0.27  Score=49.29  Aligned_cols=84  Identities=12%  Similarity=0.127  Sum_probs=68.3

Q ss_pred             hccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 006908          409 FKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRG  488 (626)
Q Consensus       409 f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g  488 (626)
                      .+..+|..|+++...-.+    ..|.+           ...+.-+|.||+...+|..|..+|++.-.+.|...+-.+..+
T Consensus        21 I~d~ry~DaI~~l~s~~E----r~p~~-----------rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~A   85 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSELE----RSPRS-----------RAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQA   85 (459)
T ss_pred             HHHhhHHHHHHHHHHHHh----cCccc-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence            455677777777665555    34433           345677999999999999999999999999999999989999


Q ss_pred             HHHHHcCCHHHHHHHHHHH
Q 006908          489 MAYMALGEFEEAQRDFEMM  507 (626)
Q Consensus       489 ~a~~~lg~~~eA~~~~~kA  507 (626)
                      +.+++.+.|.+|++.....
T Consensus        86 QSLY~A~i~ADALrV~~~~  104 (459)
T KOG4340|consen   86 QSLYKACIYADALRVAFLL  104 (459)
T ss_pred             HHHHHhcccHHHHHHHHHh
Confidence            9999999999999876644

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=94.65  E-value=0.59  Score=53.39  Aligned_cols=90  Identities=23%  Similarity=0.252  Sum_probs=72.3

Q ss_pred             hhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHH
Q 006908          408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD-ANPAHVKGLYR  486 (626)
Q Consensus       408 ~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~-~dp~~~ka~~~  486 (626)
                      ....++|.+|+....+.++    ..|+.           ..+..--|..++++|++++|. .|-+++. ..+++-..+--
T Consensus        19 ~ld~~qfkkal~~~~kllk----k~Pn~-----------~~a~vLkaLsl~r~gk~~ea~-~~Le~~~~~~~~D~~tLq~   82 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLK----KHPNA-----------LYAKVLKALSLFRLGKGDEAL-KLLEALYGLKGTDDLTLQF   82 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHH----HCCCc-----------HHHHHHHHHHHHHhcCchhHH-HHHhhhccCCCCchHHHHH
Confidence            4456789999999999998    45543           223344688899999999999 5555555 44566778888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908          487 RGMAYMALGEFEEAQRDFEMMMKVDKS  513 (626)
Q Consensus       487 ~g~a~~~lg~~~eA~~~~~kAl~l~P~  513 (626)
                      +-.||..++++++|...|++|+..+|+
T Consensus        83 l~~~y~d~~~~d~~~~~Ye~~~~~~P~  109 (932)
T KOG2053|consen   83 LQNVYRDLGKLDEAVHLYERANQKYPS  109 (932)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhCCc
Confidence            999999999999999999999999998

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=94.64  E-value=0.21  Score=58.16  Aligned_cols=63  Identities=13%  Similarity=0.056  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (626)
Q Consensus       448 ~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l  510 (626)
                      ..|..+..++.+.|+++.|...+++++.++|++...|..+.++|...|++++|.+.++...+.
T Consensus       495 ~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        495 NMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            457777778888899999999999988899988888888999999999999999888876654

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.41  E-value=0.45  Score=47.13  Aligned_cols=72  Identities=22%  Similarity=0.329  Sum_probs=53.5

Q ss_pred             HHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006908          453 VAACLLKL----GECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (626)
Q Consensus       453 la~~~~kl----~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l  525 (626)
                      ||.++.++    +.+.+|.-.|+..=+.-|.++..+.-++.|++.+++|++|...++.||.-++++ ++...++-.+
T Consensus       175 LA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d-petL~Nliv~  250 (299)
T KOG3081|consen  175 LAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD-PETLANLIVL  250 (299)
T ss_pred             HHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC-HHHHHHHHHH
Confidence            55555543    347778888887766566788888888999999999999999999999988876 5555444443

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.38  E-value=0.082  Score=36.35  Aligned_cols=29  Identities=17%  Similarity=0.195  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908          448 LLHLNVAACLLKLGECRKSIEACNKVLDA  476 (626)
Q Consensus       448 ~~~~Nla~~~~kl~~~~~A~~~~~~aL~~  476 (626)
                      .+++|+|.+|..+|+|.+|+..+.+++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            46677777777777777777777777654

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.27  E-value=0.38  Score=47.01  Aligned_cols=99  Identities=12%  Similarity=0.104  Sum_probs=65.5

Q ss_pred             hhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhC--
Q 006908          404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL----DAN--  477 (626)
Q Consensus       404 ~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL----~~d--  477 (626)
                      ++......-+.+.|+++|++++.++..-.         ...+...++...+..+.+++.|.+|...+.+-.    ..+  
T Consensus       116 KAak~lenv~Pd~AlqlYqralavve~~d---------r~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y  186 (308)
T KOG1585|consen  116 KAAKALENVKPDDALQLYQRALAVVEEDD---------RDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAY  186 (308)
T ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHhccc---------hHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhc
Confidence            33444445566777777777776543211         122334567778888999999999888777643    222  


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006908          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (626)
Q Consensus       478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~  511 (626)
                      +...|++.-.-.+|+.+.+|..|...|+....+.
T Consensus       187 ~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip  220 (308)
T KOG1585|consen  187 NSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP  220 (308)
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence            3445666666666777779999999999887774

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=94.18  E-value=0.15  Score=55.25  Aligned_cols=101  Identities=17%  Similarity=0.195  Sum_probs=81.4

Q ss_pred             hhhchhh-ccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 006908          403 VTGNRLF-KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV  481 (626)
Q Consensus       403 ~~Gn~~f-~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~  481 (626)
                      ..+..|+ -+|+..+|+.+|..|+.......             +-..++.+|.++.++|.-.+|--.+..|+.-.|.-.
T Consensus       217 ~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~-------------kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t  283 (886)
T KOG4507|consen  217 NMASFYWRIKGEPYQAVECAMRALHFSSRHN-------------KDIALLSLATVLHRAGFSADAAVILHAALDDADFFT  283 (886)
T ss_pred             HHHHHHHHHcCChhhhhHHHHHHhhhCCccc-------------ccchhhhHHHHHHHcccccchhheeehhccCCcccc
Confidence            3444444 57889999999999998433211             124677899999999999999888888887777666


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 006908          482 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP  516 (626)
Q Consensus       482 ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~  516 (626)
                      .-+|-+|+++.++++|...+..|..|++.+|...+
T Consensus       284 ~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q  318 (886)
T KOG4507|consen  284 SNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQ  318 (886)
T ss_pred             ccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhH
Confidence            67999999999999999999999999999997654

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=93.90  E-value=0.35  Score=38.66  Aligned_cols=68  Identities=16%  Similarity=0.252  Sum_probs=52.7

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~  476 (626)
                      .+....+.|-.+|.+.+..+|+..++++|+...    ..+        .+..++--++.+|...|+|.+++.+..+=+.+
T Consensus         5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~----~~~--------~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKIT----DRE--------DRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcC----ChH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567788999999999999999999999999432    221        13455666788888999999998887765544

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PLN03218 maturation of RBCL 1; Provisional

Probab=93.76  E-value=1.2  Score=53.84  Aligned_cols=62  Identities=11%  Similarity=0.044  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908          449 LHLNVAACLLKLGECRKSIEACNKVLDAN-PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (626)
Q Consensus       449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~d-p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l  510 (626)
                      .|+.+-.+|.+.|++++|+..+....+.+ +.+...|..+..+|.+.|++++|+..|++..+.
T Consensus       581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~  643 (1060)
T PLN03218        581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK  643 (1060)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence            45556666777777777777777766655 335556666666666777777777766666554

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=93.67  E-value=0.18  Score=53.62  Aligned_cols=98  Identities=12%  Similarity=0.106  Sum_probs=76.0

Q ss_pred             HHHHHHHHhhhchhhccccHHHHHHHHHHHHH-hcccC----CCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHH
Q 006908          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLR-DFNHV----NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEA  469 (626)
Q Consensus       395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~-~l~~~----~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~  469 (626)
                      +..+-.+.+.|-.+|+-+.|..++.+|.+||+ ....+    .|..  ..-....-...+.+|.|..|+..|+...|.++
T Consensus       280 ~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~--~~tls~nks~eilYNcG~~~Lh~grPl~AfqC  357 (696)
T KOG2471|consen  280 LSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAK--TFTLSQNKSMEILYNCGLLYLHSGRPLLAFQC  357 (696)
T ss_pred             hhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCc--ceehhcccchhhHHhhhHHHHhcCCcHHHHHH
Confidence            34555667899999999999999999999996 22211    1111  00011223345789999999999999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHc
Q 006908          470 CNKVLDANPAHVKGLYRRGMAYMAL  494 (626)
Q Consensus       470 ~~~aL~~dp~~~ka~~~~g~a~~~l  494 (626)
                      +.++...-..|+.-|.|+|.|+++.
T Consensus       358 f~~av~vfh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  358 FQKAVHVFHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            9999999999999999999999864

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=93.48  E-value=1.2  Score=47.60  Aligned_cols=109  Identities=17%  Similarity=0.157  Sum_probs=89.8

Q ss_pred             HHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 006908          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (626)
Q Consensus       401 ~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~  480 (626)
                      +...|.---.++++..|...|.+||.    ....+           .++|+.-|.|-+|.+....|....++|+.+-|.-
T Consensus        76 WikYaqwEesq~e~~RARSv~ERALd----vd~r~-----------itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV  140 (677)
T KOG1915|consen   76 WIKYAQWEESQKEIQRARSVFERALD----VDYRN-----------ITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV  140 (677)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHh----ccccc-----------chHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH
Confidence            33445555567889999999999998    33332           6799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908          481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (626)
Q Consensus       481 ~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~  526 (626)
                      -+-||..-..--.||+..-|...|++-++..|+.  .++...-...
T Consensus       141 dqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~e--qaW~sfI~fE  184 (677)
T KOG1915|consen  141 DQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDE--QAWLSFIKFE  184 (677)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcH--HHHHHHHHHH
Confidence            9999999888889999999999999999999984  3444443333

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=93.39  E-value=0.33  Score=42.14  Aligned_cols=117  Identities=20%  Similarity=0.200  Sum_probs=75.2

Q ss_pred             HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHH----HHHH
Q 006908          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN----KVLD  475 (626)
Q Consensus       400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~----~aL~  475 (626)
                      ++...|+.+|+.+++-.|+-+|++|+.....+...++.+...+.-..+...-|+|.-+..+|+-+-.+++..    +++.
T Consensus         3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt   82 (140)
T PF10952_consen    3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT   82 (140)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence            456789999999999999999999999766664333333333444455667789999999999988888765    4566


Q ss_pred             hCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 006908          476 ANPAHVKGLYRRGMA-YMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK  524 (626)
Q Consensus       476 ~dp~~~ka~~~~g~a-~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~  524 (626)
                      +-|..+..-   ..+ --.+|--..|+-+|   ++-.|+  +.+.+.++.
T Consensus        83 LiPQCp~~~---C~afi~sLGCCk~ALl~F---~KRHPN--P~iA~~vq~  124 (140)
T PF10952_consen   83 LIPQCPNTE---CEAFIDSLGCCKKALLDF---MKRHPN--PEIARLVQH  124 (140)
T ss_pred             hccCCCCcc---hHHHHHhhhccHHHHHHH---HHhCCC--HHHHHHHHh
Confidence            666543211   111 11233333444444   455676  555555543

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.39  E-value=0.16  Score=34.81  Aligned_cols=30  Identities=30%  Similarity=0.396  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908          481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (626)
Q Consensus       481 ~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l  510 (626)
                      +.++.++|.+|..+|++++|+..+++++.+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            467899999999999999999999999876

>PLN03218 maturation of RBCL 1; Provisional

Probab=93.37  E-value=1.6  Score=52.96  Aligned_cols=61  Identities=11%  Similarity=0.092  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006908          448 LLHLNVAACLLKLGECRKSIEACNKVLDA--NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK  509 (626)
Q Consensus       448 ~~~~Nla~~~~kl~~~~~A~~~~~~aL~~--dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~  509 (626)
                      ..|+.+..+|.+.|++++|+..+.+....  .| +...|..+..+|.+.|++++|++.|++...
T Consensus       685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~  747 (1060)
T PLN03218        685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKR  747 (1060)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            35666666677777777777777666543  23 456666677777777777777777776554

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=93.28  E-value=0.9  Score=46.44  Aligned_cols=94  Identities=10%  Similarity=0.029  Sum_probs=73.3

Q ss_pred             chhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHH
Q 006908          406 NRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK-LGECRKSIEACNKVLDANPAHVKGL  484 (626)
Q Consensus       406 n~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~k-l~~~~~A~~~~~~aL~~dp~~~ka~  484 (626)
                      +..-+.+..+.|...|.+|+.    ...           ....+|...|..-++ .++...|...++.++..-|.+...|
T Consensus         9 ~~~~r~~g~~~aR~vF~~a~~----~~~-----------~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~   73 (280)
T PF05843_consen    9 RFMRRTEGIEAARKVFKRARK----DKR-----------CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFW   73 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC----CCC-----------S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHHHhCChHHHHHHHHHHHc----CCC-----------CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHH
Confidence            344445558899999999985    211           123578878888666 5677779999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          485 YRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       485 ~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      ..-..-+..+++.+.|+..|++++..-|..
T Consensus        74 ~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~  103 (280)
T PF05843_consen   74 LEYLDFLIKLNDINNARALFERAISSLPKE  103 (280)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHCCTSSCH
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHhcCch
Confidence            999999999999999999999999987764

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PLN03077 Protein ECB2; Provisional

Probab=93.11  E-value=1.3  Score=53.04  Aligned_cols=61  Identities=13%  Similarity=0.090  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006908          449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK  509 (626)
Q Consensus       449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~  509 (626)
                      +|..+-.++...++.+.|...++++++++|+++..|..++++|...|+|++|.+..+...+
T Consensus       659 ~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~  719 (857)
T PLN03077        659 VWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE  719 (857)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence            4444444455667777777778888888888888888888888888888888877766543

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=93.06  E-value=0.95  Score=42.52  Aligned_cols=67  Identities=21%  Similarity=0.261  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          448 LLHLNVAACLLKLGECRKSIEACNKVLD-ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       448 ~~~~Nla~~~~kl~~~~~A~~~~~~aL~-~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      .-.+.+|.+...+|+|.+|...|.+++. +-..++..+.-++++.+.++++.+|...+++..+-+|..
T Consensus        90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~  157 (251)
T COG4700          90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF  157 (251)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc
Confidence            3467799999999999999999999986 456788899999999999999999999999999988753

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=93.04  E-value=2.5  Score=45.10  Aligned_cols=72  Identities=18%  Similarity=0.211  Sum_probs=56.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHH
Q 006908          454 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS---EPDATAALSKLKKQR  529 (626)
Q Consensus       454 a~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~---~~~~~~~l~~l~~~~  529 (626)
                      |.-++-.|+|.+|.-++.=+.+++| ++.+|-.+|.|++...+|++|..+|...   -|++   +..+++++..+++.+
T Consensus       469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L---P~n~~~~dskvqKAl~lCqKh~  543 (549)
T PF07079_consen  469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL---PPNERMRDSKVQKALALCQKHL  543 (549)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC---CCchhhHHHHHHHHHHHHHHhh
Confidence            4446779999999999999999999 9999999999999999999999988753   3321   133555555554433

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.77  E-value=2.2  Score=41.63  Aligned_cols=108  Identities=15%  Similarity=0.175  Sum_probs=69.6

Q ss_pred             HHHHHHHHHhhh-chhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006908          394 IMDEAEKIRVTG-NRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK  472 (626)
Q Consensus       394 ~~~~a~~~k~~G-n~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~  472 (626)
                      +++.|..+..+| |.+--.++|..|-..|.+|..+--.....+         -.+++|.-.+.||-+. +..+|+.++.+
T Consensus        29 k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skh---------Daat~YveA~~cykk~-~~~eAv~cL~~   98 (288)
T KOG1586|consen   29 KYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKH---------DAATTYVEAANCYKKV-DPEEAVNCLEK   98 (288)
T ss_pred             chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCch---------hHHHHHHHHHHHhhcc-ChHHHHHHHHH
Confidence            444454444444 444456678888888888776432222211         1356788888887655 89999999999


Q ss_pred             HHHhCCC------CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcC
Q 006908          473 VLDANPA------HVKGLYRRGMAYMA-LGEFEEAQRDFEMMMKVD  511 (626)
Q Consensus       473 aL~~dp~------~~ka~~~~g~a~~~-lg~~~eA~~~~~kAl~l~  511 (626)
                      ++++--+      -++-+.-+|..|-. +.++++|+..|++|-+--
T Consensus        99 aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~y  144 (288)
T KOG1586|consen   99 AIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYY  144 (288)
T ss_pred             HHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            9887432      13444455665554 488889999999887763

>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.39  E-value=0.47  Score=50.71  Aligned_cols=119  Identities=18%  Similarity=0.196  Sum_probs=67.9

Q ss_pred             HHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHc--CC-----HHHHHH
Q 006908          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL--GE-----CRKSIE  468 (626)
Q Consensus       396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl--~~-----~~~A~~  468 (626)
                      .......+.|-.+|..|+|.+|+..|+..|..+.-+.-.+.+|...++++...|.--+-.+.+.+  +.     .+....
T Consensus       202 ~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR  281 (422)
T PF06957_consen  202 SSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKR  281 (422)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHH
Confidence            33444556799999999999999999999987765555565666666665554432222222221  11     112222


Q ss_pred             HHHHHH-----HhCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          469 ACNKVL-----DANPAHVKGLYRRG-MAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       469 ~~~~aL-----~~dp~~~ka~~~~g-~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      .++-|.     .+.|.+.---+|.| ...+++++|--|....++.|++.|..
T Consensus       282 ~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~  333 (422)
T PF06957_consen  282 NLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP  333 (422)
T ss_dssp             HHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence            222222     22333332223333 34567899999999999999999985

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.33  E-value=1.8  Score=42.97  Aligned_cols=88  Identities=19%  Similarity=0.187  Sum_probs=68.9

Q ss_pred             ccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006908          412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAY  491 (626)
Q Consensus       412 g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~  491 (626)
                      +++..|.-.|+..-.-   ..|            ...+.+.+|.|++.+++|++|......||.-+++.+.++-|+-.+-
T Consensus       187 ek~qdAfyifeE~s~k---~~~------------T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a  251 (299)
T KOG3081|consen  187 EKIQDAFYIFEELSEK---TPP------------TPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLA  251 (299)
T ss_pred             hhhhhHHHHHHHHhcc---cCC------------ChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence            3577777777765541   112            1346777999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHH-HHHhcCCCC
Q 006908          492 MALGEFEEAQRDFE-MMMKVDKSS  514 (626)
Q Consensus       492 ~~lg~~~eA~~~~~-kAl~l~P~~  514 (626)
                      ..+|.-.++...+- +....+|.+
T Consensus       252 ~~~Gkd~~~~~r~l~QLk~~~p~h  275 (299)
T KOG3081|consen  252 LHLGKDAEVTERNLSQLKLSHPEH  275 (299)
T ss_pred             HHhCCChHHHHHHHHHHHhcCCcc
Confidence            99999888776554 444456765

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.25  E-value=0.22  Score=34.04  Aligned_cols=29  Identities=21%  Similarity=0.271  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908          482 KGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (626)
Q Consensus       482 ka~~~~g~a~~~lg~~~eA~~~~~kAl~l  510 (626)
                      .+|.++|-+.+...+|++|+.+|++||++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            46888999999999999999999999876

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.23  E-value=2.4  Score=43.41  Aligned_cols=104  Identities=19%  Similarity=0.179  Sum_probs=65.3

Q ss_pred             HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCCh----------------h-----HHHHHh------hhhhHHHH
Q 006908          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDD----------------E-----EGKVFV------GKRNLLHL  451 (626)
Q Consensus       399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~----------------e-----e~~~~~------~~~~~~~~  451 (626)
                      +++...+..+|.+|++.+|...+.+.|..+    |.+-                +     -.+++.      +...-++-
T Consensus       104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~----PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~G  179 (491)
T KOG2610|consen  104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDY----PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHG  179 (491)
T ss_pred             HhhhhhHHHhhccccccHHHHHHHHHHHhC----chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHH
Confidence            445566778899999999999999998843    2220                0     000000      11122233


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006908          452 NVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEM  506 (626)
Q Consensus       452 Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~k  506 (626)
                      -.|-|+...|-|.+|.+.+.+++++++.+.-|...++.++...+++.++++...+
T Consensus       180 myaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~  234 (491)
T KOG2610|consen  180 MYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK  234 (491)
T ss_pred             HHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence            3566666677777777777777777777777777777777777777777766554

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=92.10  E-value=1.6  Score=45.75  Aligned_cols=113  Identities=15%  Similarity=0.124  Sum_probs=77.5

Q ss_pred             HHhhhchhhccccHHHHHHHHHHHHH-hcccC-CCCChh-----------------HHHHHhhhhhHHHHHHHHHHHHc-
Q 006908          401 IRVTGNRLFKEGKFELAKAKYEKVLR-DFNHV-NPQDDE-----------------EGKVFVGKRNLLHLNVAACLLKL-  460 (626)
Q Consensus       401 ~k~~Gn~~f~~g~~~~A~~~y~~al~-~l~~~-~p~~~e-----------------e~~~~~~~~~~~~~Nla~~~~kl-  460 (626)
                      ..+.+..++.+|+..+|+...+..+. .+... .+....                 .........+.+++-+|.-...+ 
T Consensus       187 ~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~  266 (352)
T PF02259_consen  187 FLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELY  266 (352)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhc
Confidence            34556666777777888888877776 32211 000000                 01112344566777777777777 


Q ss_pred             -----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHhcCCC
Q 006908          461 -----GECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF-----------------EEAQRDFEMMMKVDKS  513 (626)
Q Consensus       461 -----~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~-----------------~eA~~~~~kAl~l~P~  513 (626)
                           +.+..++..|..++.++|.+.++|++.|..+..+=+.                 ..|+..|-+|+.+.+.
T Consensus       267 ~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  267 SKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             cccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence                 7899999999999999999999999999988765222                 3478888888888776

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=92.08  E-value=1  Score=48.57  Aligned_cols=102  Identities=18%  Similarity=0.174  Sum_probs=72.5

Q ss_pred             HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC
Q 006908          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA-NP  478 (626)
Q Consensus       400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~-dp  478 (626)
                      ..+..|..+.+.|+.++|++.|+..++.+    |..+         ...++.|+..|++.++.|.++.....+-=.+ -|
T Consensus       261 ~KrRLAmCarklGr~~EAIk~~rdLlke~----p~~~---------~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp  327 (539)
T PF04184_consen  261 AKRRLAMCARKLGRLREAIKMFRDLLKEF----PNLD---------NLNIRENLIEALLELQAYADVQALLAKYDDISLP  327 (539)
T ss_pred             hHHHHHHHHHHhCChHHHHHHHHHHHhhC----Cccc---------hhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence            34568889999999999999999999843    3211         2458999999999999999998877764222 25


Q ss_pred             CCHHHHHHHHHHHHH-cCC---------------HHHHHHHHHHHHhcCCCC
Q 006908          479 AHVKGLYRRGMAYMA-LGE---------------FEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       479 ~~~ka~~~~g~a~~~-lg~---------------~~eA~~~~~kAl~l~P~~  514 (626)
                      .++.-.|..|....+ .++               -..|++.+.+|.+.||.-
T Consensus       328 kSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV  379 (539)
T PF04184_consen  328 KSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV  379 (539)
T ss_pred             chHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence            566555655543322 111               134788999999999864

The molecular function of this protein is uncertain.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=91.94  E-value=0.83  Score=45.80  Aligned_cols=71  Identities=18%  Similarity=0.163  Sum_probs=60.5

Q ss_pred             hHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006908          437 EEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMM  507 (626)
Q Consensus       437 ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kA  507 (626)
                      .+.+-+..+...++.-.|..|++.+.|.+|+..|++++.++|-+-..+.-+-+.+..+|+--.|...|++.
T Consensus       269 dererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         269 DERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            34445556666777778999999999999999999999999999999999999999999987787777654

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=91.83  E-value=4.6  Score=41.15  Aligned_cols=88  Identities=18%  Similarity=0.309  Sum_probs=68.1

Q ss_pred             hhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh----CC---C
Q 006908          408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-ECRKSIEACNKVLDA----NP---A  479 (626)
Q Consensus       408 ~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~-~~~~A~~~~~~aL~~----dp---~  479 (626)
                      ..++|+++.|..+|.|+-..+....|..       ....+..++|.|...++.+ +|..|....++|+++    ..   .
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~-------~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~   75 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDM-------AEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKL   75 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHH-------HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhcccc
Confidence            4678999999999999988665444433       3345778999999999999 999999999999887    21   1


Q ss_pred             -------CHHHHHHHHHHHHHcCCHHHHHH
Q 006908          480 -------HVKGLYRRGMAYMALGEFEEAQR  502 (626)
Q Consensus       480 -------~~ka~~~~g~a~~~lg~~~eA~~  502 (626)
                             ..+.+..++++|...+.++...+
T Consensus        76 ~~~~~elr~~iL~~La~~~l~~~~~~~~~k  105 (278)
T PF08631_consen   76 SPDGSELRLSILRLLANAYLEWDTYESVEK  105 (278)
T ss_pred             CCcHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence                   14567788999999888764433

It is also involved in sporulation [].

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.80  E-value=0.65  Score=48.57  Aligned_cols=97  Identities=14%  Similarity=0.175  Sum_probs=77.0

Q ss_pred             HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Q 006908          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN--  477 (626)
Q Consensus       400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d--  477 (626)
                      .+.+.|..|...|++..|+++|.++-.++.+            .+..+..+.|+-.+-+-+++|.....+..+|...-  
T Consensus       152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs------------~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~  219 (466)
T KOG0686|consen  152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTS------------AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDA  219 (466)
T ss_pred             HHHHHHHHHHHhccHHHHHhhhhhhhhhhcc------------hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchh
Confidence            4557888888999999999999998876553            23345678888888899999999999888887651  


Q ss_pred             ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908          478 ------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMM  508 (626)
Q Consensus       478 ------p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl  508 (626)
                            .-.++.....|.|++.+++|..|.+.|-.+.
T Consensus       220 ~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  220 NENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             hhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence                  1235677788999999999999999886553

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=91.79  E-value=2.1  Score=43.37  Aligned_cols=71  Identities=18%  Similarity=0.238  Sum_probs=65.4

Q ss_pred             HHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908          440 KVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (626)
Q Consensus       440 ~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l  510 (626)
                      ..+.+....++.-++..+...++++.++...++.+.++|-+-++|.++-.+|+..|+...|+..|++.-++
T Consensus       146 ~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         146 RALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            34566778899999999999999999999999999999999999999999999999999999999987663

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=91.78  E-value=3.2  Score=37.48  Aligned_cols=73  Identities=23%  Similarity=0.278  Sum_probs=51.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCC--------C--------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908          453 VAACLLKLGECRKSIEACNKVLDANP--------A--------------HVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (626)
Q Consensus       453 la~~~~kl~~~~~A~~~~~~aL~~dp--------~--------------~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l  510 (626)
                      .|......++...++..+.+++.+-.        .              ...++.+++.++...|++++|+..+++++.+
T Consensus        12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~   91 (146)
T PF03704_consen   12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL   91 (146)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence            45555667788888888888886641        1              1457777888899999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 006908          511 DKSSEPDATAALSKLK  526 (626)
Q Consensus       511 ~P~~~~~~~~~l~~l~  526 (626)
                      +|-++ .+...+-.+.
T Consensus        92 dP~~E-~~~~~lm~~~  106 (146)
T PF03704_consen   92 DPYDE-EAYRLLMRAL  106 (146)
T ss_dssp             STT-H-HHHHHHHHHH
T ss_pred             CCCCH-HHHHHHHHHH
Confidence            99984 4555544443

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=91.36  E-value=1.9  Score=35.98  Aligned_cols=55  Identities=18%  Similarity=0.312  Sum_probs=46.1

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006908          457 LLKLGECRKSIEACNKVLDANPA---------HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (626)
Q Consensus       457 ~~kl~~~~~A~~~~~~aL~~dp~---------~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~  511 (626)
                      .++.++|..|++.+.+.+.....         ..-|+.++|..+...|++++|+..++.|+.+-
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            46789999999988888765321         14688999999999999999999999999984

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=91.09  E-value=2  Score=50.04  Aligned_cols=77  Identities=12%  Similarity=-0.008  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006908          449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (626)
Q Consensus       449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~  528 (626)
                      .|..+..++.+.|++++|.+.+.+. ...| +...|..+..++...|+++.|...++++++++|++ ......|..+...
T Consensus       464 ~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~-~~~y~~L~~~y~~  540 (697)
T PLN03081        464 HYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK-LNNYVVLLNLYNS  540 (697)
T ss_pred             chHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC-CcchHHHHHHHHh
Confidence            5677888888899999998877654 2233 56678888889999999999999999999999976 3344444444433

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=90.99  E-value=3.2  Score=44.44  Aligned_cols=138  Identities=19%  Similarity=0.246  Sum_probs=80.3

Q ss_pred             ccccHHHHHHHHHHHHHhcccCCCCChhHHHHH----------hhhhhHHHHHHHHH------------HHHcCCHHHHH
Q 006908          410 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVF----------VGKRNLLHLNVAAC------------LLKLGECRKSI  467 (626)
Q Consensus       410 ~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~----------~~~~~~~~~Nla~~------------~~kl~~~~~A~  467 (626)
                      ...+.+.+.+.|+.+|.++++..-.-..-+.+.          ...+..+-+.+|.|            -+++++|+.|.
T Consensus       378 e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcR  457 (677)
T KOG1915|consen  378 EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCR  457 (677)
T ss_pred             HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHH
Confidence            356788899999999995443221111101000          00011111222222            35577888888


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHccccC
Q 006908          468 EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP-DATAALSKLKKQRQEVESKARKQFKGLFDK  546 (626)
Q Consensus       468 ~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~-~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  546 (626)
                      ..|.+-|+..|.|.-+|...|..-..||+.+.|.+.|.-|+....-+.+ -+++..-...-.. ..-++.|+.|..+++.
T Consensus       458 kLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~-~E~ekaR~LYerlL~r  536 (677)
T KOG1915|consen  458 KLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEE-GEFEKARALYERLLDR  536 (677)
T ss_pred             HHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhc-chHHHHHHHHHHHHHh
Confidence            8888888888888888888888888889998888888888765321111 1222211111111 1234567788777665


Q ss_pred             CC
Q 006908          547 KP  548 (626)
Q Consensus       547 ~~  548 (626)
                      .+
T Consensus       537 t~  538 (677)
T KOG1915|consen  537 TQ  538 (677)
T ss_pred             cc
Confidence            43

>PRK10941 hypothetical protein; Provisional

Probab=90.98  E-value=1.6  Score=44.13  Aligned_cols=79  Identities=16%  Similarity=0.160  Sum_probs=65.0

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      ..-+.+.=..+.+.++|+.|+++-...+.    +.|+++.+           +--+|.+|.+++.+..|+.+++.-++..
T Consensus       181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~----l~P~dp~e-----------~RDRGll~~qL~c~~~A~~DL~~fl~~~  245 (269)
T PRK10941        181 RKLLDTLKAALMEEKQMELALRASEALLQ----FDPEDPYE-----------IRDRGLIYAQLDCEHVALSDLSYFVEQC  245 (269)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHH----hCCCCHHH-----------HHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence            33445566678899999999999999999    78887543           3348999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHH
Q 006908          478 PAHVKGLYRRGMAY  491 (626)
Q Consensus       478 p~~~ka~~~~g~a~  491 (626)
                      |+.+.+..-+.+..
T Consensus       246 P~dp~a~~ik~ql~  259 (269)
T PRK10941        246 PEDPISEMIRAQIH  259 (269)
T ss_pred             CCchhHHHHHHHHH
Confidence            99988776665544

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.96  E-value=2.1  Score=40.57  Aligned_cols=105  Identities=15%  Similarity=0.251  Sum_probs=73.3

Q ss_pred             hhhchhhcccc---HHHHHHHHHHHHHhcccCCCCChhHHHHHhhhh-h-----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006908          403 VTGNRLFKEGK---FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKR-N-----LLHLNVAACLLKLGECRKSIEACNKV  473 (626)
Q Consensus       403 ~~Gn~~f~~g~---~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~-~-----~~~~Nla~~~~kl~~~~~A~~~~~~a  473 (626)
                      --|..+++..+   ...|...|.+++..+..-.|.....-+.+..-. .     ..-+-+|..+...+++++|+..+..+
T Consensus        36 lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~  115 (207)
T COG2976          36 LFGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQA  115 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            34556665554   447889999999876555553333223332222 1     23456788899999999999999999


Q ss_pred             HHhCC-CCHH--HHHHHHHHHHHcCCHHHHHHHHHHH
Q 006908          474 LDANP-AHVK--GLYRRGMAYMALGEFEEAQRDFEMM  507 (626)
Q Consensus       474 L~~dp-~~~k--a~~~~g~a~~~lg~~~eA~~~~~kA  507 (626)
                      |..-. .+.+  +-.|+|+++..++.+++|+..+...
T Consensus       116 l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~  152 (207)
T COG2976         116 LAQTKDENLKALAALRLARVQLQQKKADAALKTLDTI  152 (207)
T ss_pred             HccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence            96543 3455  4578999999999999999987754

>PLN03077 Protein ECB2; Provisional

Probab=90.57  E-value=2.4  Score=50.73  Aligned_cols=123  Identities=15%  Similarity=0.086  Sum_probs=70.5

Q ss_pred             HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCCh---------------hH-HHHHhhh--------hhHHHHHHHH
Q 006908          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDD---------------EE-GKVFVGK--------RNLLHLNVAA  455 (626)
Q Consensus       400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~---------------ee-~~~~~~~--------~~~~~~Nla~  455 (626)
                      .+....+.+.+.|+.++|+..|++....  .+.|+..               ++ ...+..+        ....|..+..
T Consensus       556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~--g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~  633 (857)
T PLN03077        556 SWNILLTGYVAHGKGSMAVELFNRMVES--GVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD  633 (857)
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence            3555667788889999999999887651  2333321               11 0111111        1124566666


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006908          456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (626)
Q Consensus       456 ~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~  527 (626)
                      ++.+.|++++|...+++. .+.| ++..|-.+-.++...++.+.|....+++++++|++ ......|..+..
T Consensus       634 ~l~r~G~~~eA~~~~~~m-~~~p-d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~-~~~y~ll~n~ya  702 (857)
T PLN03077        634 LLGRAGKLTEAYNFINKM-PITP-DPAVWGALLNACRIHRHVELGELAAQHIFELDPNS-VGYYILLCNLYA  702 (857)
T ss_pred             HHHhCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-cchHHHHHHHHH
Confidence            666777777776666553 2334 34445555555666667777777777777777775 344445554443

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=90.52  E-value=1.1  Score=37.39  Aligned_cols=64  Identities=13%  Similarity=0.195  Sum_probs=47.3

Q ss_pred             hhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       408 ~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      ..+.++|..|++.+.+..+..........      ......+.+|+|.++...|++++|+..+++|+.+-
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSS------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchh------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            45789999999999988875332211110      11234568899999999999999999999998764

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=90.27  E-value=3.4  Score=40.56  Aligned_cols=119  Identities=13%  Similarity=0.113  Sum_probs=70.2

Q ss_pred             hhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCH-HHHH-HHHHHHHH-hC-CCCHHH
Q 006908          408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC-RKSI-EACNKVLD-AN-PAHVKG  483 (626)
Q Consensus       408 ~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~-~~A~-~~~~~aL~-~d-p~~~ka  483 (626)
                      +|..|+|+.|+....-||..=- ..|+.-  ...+-.+.+.-.++-|...++.|.. +-+. ..+..+.. .+ |+-+.|
T Consensus        93 ~~D~Gd~~~AL~ia~yAI~~~l-~~Pd~f--~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrA  169 (230)
T PHA02537         93 RFDIGDFDGALEIAEYALEHGL-TMPDQF--RRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRA  169 (230)
T ss_pred             eeeccCHHHHHHHHHHHHHcCC-CCCccc--cCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHH
Confidence            4678899999999999998411 122210  0011122233345566666777752 2221 11222211 11 444555


Q ss_pred             --HHHHHHHHH---------HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 006908          484 --LYRRGMAYM---------ALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQE  531 (626)
Q Consensus       484 --~~~~g~a~~---------~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~  531 (626)
                        |--.|.++.         ..++...|+..|++|+.++|+  .-++..++++.+.++.
T Consensus       170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k--~GVK~~i~~l~~~lr~  226 (230)
T PHA02537        170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK--CGVKKDIERLERRLKA  226 (230)
T ss_pred             HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC--CChHHHHHHHHHHHhh
Confidence              444455552         456788999999999999987  4688888888877763

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=89.90  E-value=2.8  Score=44.49  Aligned_cols=103  Identities=12%  Similarity=0.138  Sum_probs=75.8

Q ss_pred             cccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH---------Hh-----
Q 006908          411 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL---------DA-----  476 (626)
Q Consensus       411 ~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL---------~~-----  476 (626)
                      ...|.++-..|..++...   +|..--.--...+..+..++.++.++..+|++..|.+.+++||         ..     
T Consensus         7 s~~Y~~~q~~F~~~v~~~---Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~   83 (360)
T PF04910_consen    7 SKAYQEAQEQFYAAVQSH---DPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRS   83 (360)
T ss_pred             CHHHHHHHHHHHHHHHcc---CHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            456788888888887721   1111000111233456788899999999999999999999987         11     


Q ss_pred             CC------------CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Q 006908          477 NP------------AH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP  516 (626)
Q Consensus       477 dp------------~~---~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~  516 (626)
                      ++            .|   ..|+||..+++.+.|-+.-|+++++-.+.+||.+++
T Consensus        84 ~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP  138 (360)
T PF04910_consen   84 NLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDP  138 (360)
T ss_pred             ccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc
Confidence            21            22   569999999999999999999999999999999543

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=89.53  E-value=0.63  Score=45.07  Aligned_cols=60  Identities=23%  Similarity=0.306  Sum_probs=52.0

Q ss_pred             chhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 006908          406 NRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (626)
Q Consensus       406 n~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~  480 (626)
                      ..+++.++++.|.+.|.+|+.    +.|..           ..-|+.+|....|.|++..|.+.+.++|++||.+
T Consensus         3 ~~~~~~~D~~aaaely~qal~----lap~w-----------~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALE----LAPEW-----------AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             chhcccCChHHHHHHHHHHhh----cCchh-----------hhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            456788999999999999999    55543           4578889999999999999999999999999865

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.48  E-value=3.1  Score=46.02  Aligned_cols=68  Identities=22%  Similarity=0.213  Sum_probs=60.7

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA------HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       447 ~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~------~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      .+++-|-|.-++++++|..+++.|...|..-|.      .+|....++.||..+.++|.|+++++.|-+.+|.+
T Consensus       354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~  427 (872)
T KOG4814|consen  354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQS  427 (872)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccc
Confidence            356678899999999999999999999976553      37888889999999999999999999999999987

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.28  E-value=5.4  Score=39.24  Aligned_cols=102  Identities=13%  Similarity=0.100  Sum_probs=60.6

Q ss_pred             HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Q 006908          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN--  477 (626)
Q Consensus       400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d--  477 (626)
                      .+-..++.+-..++|++|..+..+|....+.-...       +  ..+..|-..|+...++..|.++...+++|..+-  
T Consensus        33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrsl-------f--hAAKayEqaamLake~~klsEvvdl~eKAs~lY~E  103 (308)
T KOG1585|consen   33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSL-------F--HAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVE  103 (308)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccH-------H--HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            33334444556678888888888888643321110       1  123445556666667777888888888876653  


Q ss_pred             ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908          478 ---PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (626)
Q Consensus       478 ---p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l  510 (626)
                         |+.+-.-.-++--....-+.++|+..|++++.+
T Consensus       104 ~GspdtAAmaleKAak~lenv~Pd~AlqlYqralav  139 (308)
T KOG1585|consen  104 CGSPDTAAMALEKAAKALENVKPDDALQLYQRALAV  139 (308)
T ss_pred             hCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence               333333333333344556677888888887776

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.16  E-value=1.6  Score=44.71  Aligned_cols=82  Identities=17%  Similarity=0.192  Sum_probs=54.0

Q ss_pred             ccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHH
Q 006908          412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH----VKGLYRR  487 (626)
Q Consensus       412 g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~----~ka~~~~  487 (626)
                      |-|.+|.+.-.+|++    +++.+           +-+....|.++-..+++.++.+...+.-..-...    .--|..-
T Consensus       189 g~y~dAEk~A~ralq----iN~~D-----------~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~  253 (491)
T KOG2610|consen  189 GIYDDAEKQADRALQ----INRFD-----------CWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHT  253 (491)
T ss_pred             ccchhHHHHHHhhcc----CCCcc-----------hHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHH
Confidence            345555555555555    44444           2234456777777899999998877653222111    2346667


Q ss_pred             HHHHHHcCCHHHHHHHHHHHH
Q 006908          488 GMAYMALGEFEEAQRDFEMMM  508 (626)
Q Consensus       488 g~a~~~lg~~~eA~~~~~kAl  508 (626)
                      |.+|..-++|+.|+..|.+-+
T Consensus       254 Al~~iE~aeye~aleIyD~ei  274 (491)
T KOG2610|consen  254 ALFHIEGAEYEKALEIYDREI  274 (491)
T ss_pred             HHhhhcccchhHHHHHHHHHH
Confidence            889999999999999998754

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=88.54  E-value=1.5  Score=46.76  Aligned_cols=70  Identities=11%  Similarity=0.023  Sum_probs=46.1

Q ss_pred             hhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCC
Q 006908          444 GKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA-LGEFEEAQRDFEMMMKVDKS  513 (626)
Q Consensus       444 ~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~-lg~~~eA~~~~~kAl~l~P~  513 (626)
                      ...+++++.+|-||+.+++|.+|+..+..+|..-...-..+..+..-+-. .+..|+....+--++.+.|.
T Consensus       161 ~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~  231 (404)
T PF10255_consen  161 ACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQ  231 (404)
T ss_pred             chheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence            34567889999999999999999999999985421111111222212211 34556677777777888885

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=88.32  E-value=2.3  Score=37.87  Aligned_cols=39  Identities=21%  Similarity=0.280  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 006908          449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRR  487 (626)
Q Consensus       449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~  487 (626)
                      +.+-+|..|+++++|.+++.+++..|+.+|+|..|.-..
T Consensus        73 ~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk  111 (149)
T KOG3364|consen   73 CLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK  111 (149)
T ss_pred             hhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            556699999999999999999999999999998775443

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.25  E-value=6  Score=42.59  Aligned_cols=99  Identities=21%  Similarity=0.290  Sum_probs=74.5

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD-  475 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~-  475 (626)
                      .+....-.|-....-+.|+.|...|..|.+....            ..+.+.+-.|+|..|++.++-+.    +.++++ 
T Consensus       366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~------------~dl~a~~nlnlAi~YL~~~~~ed----~y~~ld~  429 (629)
T KOG2300|consen  366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES------------IDLQAFCNLNLAISYLRIGDAED----LYKALDL  429 (629)
T ss_pred             HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH------------HHHHHHHHHhHHHHHHHhccHHH----HHHHHHh
Confidence            4555666777777788899999999999984321            33567788999999999776443    333333 


Q ss_pred             hCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006908          476 ANPAH----------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (626)
Q Consensus       476 ~dp~~----------~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~  511 (626)
                      +.|.|          +.++|-.|.-.+..+++.||+..+.+.|++.
T Consensus       430 i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  430 IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence            34543          4578889999999999999999999998875

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=88.21  E-value=4.5  Score=37.29  Aligned_cols=82  Identities=16%  Similarity=0.088  Sum_probs=61.2

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (626)
Q Consensus       447 ~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~  526 (626)
                      ...+..+..+-++.++..++...+.-+-.+.|+++..-.--|..|+..|+|.+|+..|+.+..-.|.+ +-++..+..+-
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~-p~~kALlA~CL   88 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGF-PYAKALLALCL   88 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC-hHHHHHHHHHH
Confidence            34556667777778888888887777777888888888888888888888888888888877766665 66666666665


Q ss_pred             HHH
Q 006908          527 KQR  529 (626)
Q Consensus       527 ~~~  529 (626)
                      ..+
T Consensus        89 ~~~   91 (160)
T PF09613_consen   89 YAL   91 (160)
T ss_pred             HHc
Confidence            433

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=88.15  E-value=5.8  Score=43.75  Aligned_cols=67  Identities=18%  Similarity=0.206  Sum_probs=56.8

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA----HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (626)
Q Consensus       447 ~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~----~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~  513 (626)
                      .-.++..|..+...|+.++|+..+++++.....    ..-++|.+|.+++.+.+|++|..+|.+.++.+.-
T Consensus       267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W  337 (468)
T PF10300_consen  267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW  337 (468)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc
Confidence            446788999999999999999999999854332    2457999999999999999999999999987644

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=88.09  E-value=3.9  Score=39.95  Aligned_cols=88  Identities=15%  Similarity=0.100  Sum_probs=56.4

Q ss_pred             HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (626)
Q Consensus       395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL  474 (626)
                      +..|-.++..++......-+..|+..|.+|+..-..  |....       -...+.+-+|..+.++|++++|+..+.+++
T Consensus       122 LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~--~~~~~-------~~~~l~YLigeL~rrlg~~~eA~~~fs~vi  192 (214)
T PF09986_consen  122 LRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDF--PIEGM-------DEATLLYLIGELNRRLGNYDEAKRWFSRVI  192 (214)
T ss_pred             HHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcC--CCCCc-------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            334455556666555555577788888888763221  11110       113467779999999999999999999999


Q ss_pred             HhCCCCH-HHHHHHHHHH
Q 006908          475 DANPAHV-KGLYRRGMAY  491 (626)
Q Consensus       475 ~~dp~~~-ka~~~~g~a~  491 (626)
                      .....+. ..+.++|+-+
T Consensus       193 ~~~~~s~~~~l~~~AR~~  210 (214)
T PF09986_consen  193 GSKKASKEPKLKDMARDQ  210 (214)
T ss_pred             cCCCCCCcHHHHHHHHHH
Confidence            7653332 3555555533

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=87.55  E-value=0.75  Score=28.34  Aligned_cols=24  Identities=25%  Similarity=0.307  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH
Q 006908          482 KGLYRRGMAYMALGEFEEAQRDFE  505 (626)
Q Consensus       482 ka~~~~g~a~~~lg~~~eA~~~~~  505 (626)
                      .+++.+|.++..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            356666777777777777766554

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=87.25  E-value=12  Score=38.93  Aligned_cols=119  Identities=18%  Similarity=0.149  Sum_probs=84.9

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~  476 (626)
                      .+..+...+..+.+.|+|..|.....++..........           ...+.+-.|..+...|+..+|+......+..
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~-----------~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~  213 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL-----------LPRVFLEYAKLLWAQGEQEEAIQKLRELLKC  213 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC-----------CcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            45667788888999999999999999888733211111           1234555677777788888888887777661


Q ss_pred             --C--------------------------------CCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCCHH
Q 006908          477 --N--------------------------------PAHVKGLYRRGMAYMAL------GEFEEAQRDFEMMMKVDKSSEP  516 (626)
Q Consensus       477 --d--------------------------------p~~~ka~~~~g~a~~~l------g~~~eA~~~~~kAl~l~P~~~~  516 (626)
                        .                                ...+++++.+|.-...+      +.+++++..|+.|++++|.+. 
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-  292 (352)
T PF02259_consen  214 RLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE-  292 (352)
T ss_pred             HhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH-
Confidence              0                                01257888888888888      889999999999999999874 


Q ss_pred             HHHHHHHHHHH
Q 006908          517 DATAALSKLKK  527 (626)
Q Consensus       517 ~~~~~l~~l~~  527 (626)
                      .+...++....
T Consensus       293 k~~~~~a~~~~  303 (352)
T PF02259_consen  293 KAWHSWALFND  303 (352)
T ss_pred             HHHHHHHHHHH
Confidence            35555554443

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.15  E-value=7.1  Score=38.84  Aligned_cols=110  Identities=15%  Similarity=0.234  Sum_probs=78.6

Q ss_pred             hhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hC-
Q 006908          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD----AN-  477 (626)
Q Consensus       403 ~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~----~d-  477 (626)
                      ...+.+.-.|.|.-.+..|.+.++..+   +.+           ..+...++...++.|+.+.|..+++++-.    ++ 
T Consensus       182 ~~~~~llG~kEy~iS~d~~~~vi~~~~---e~~-----------p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~  247 (366)
T KOG2796|consen  182 SMANCLLGMKEYVLSVDAYHSVIKYYP---EQE-----------PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDG  247 (366)
T ss_pred             HHHHHHhcchhhhhhHHHHHHHHHhCC---ccc-----------HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhc
Confidence            345566666777777777777777211   211           34667789999999999999999995532    33 


Q ss_pred             -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006908          478 -PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (626)
Q Consensus       478 -p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~  527 (626)
                       ..+.-.+.+.+..|...++|-+|...|.+.+..||.+ +.+.++-+.+..
T Consensus       248 ~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~-~~a~NnKALcll  297 (366)
T KOG2796|consen  248 LQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRN-AVANNNKALCLL  297 (366)
T ss_pred             cchhHHHHhhhhhheecccchHHHHHHHhhccccCCCc-hhhhchHHHHHH
Confidence             2345567778888888899999999999999999987 455555444443

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=86.63  E-value=1  Score=31.85  Aligned_cols=25  Identities=24%  Similarity=0.469  Sum_probs=20.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHh
Q 006908          485 YRRGMAYMALGEFEEAQRDFEMMMK  509 (626)
Q Consensus       485 ~~~g~a~~~lg~~~eA~~~~~kAl~  509 (626)
                      +.+|.+|..+|+++.|+..++..+.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            6778888888888888888888884

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=86.50  E-value=1.6  Score=44.24  Aligned_cols=78  Identities=13%  Similarity=0.155  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYR-RGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (626)
Q Consensus       448 ~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~-~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~  526 (626)
                      .+|..-+.-..+.+.|.+.-..|.++|...|.|+.-|.. .+.-+...++++.|++.|.++|.++|.+ +.++.+.-+++
T Consensus       108 k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~-p~iw~eyfr~E  186 (435)
T COG5191         108 KIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS-PRIWIEYFRME  186 (435)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC-chHHHHHHHHH
Confidence            456666666677889999999999999999999998876 5667788899999999999999999998 67777665543

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=86.48  E-value=4.1  Score=35.44  Aligned_cols=73  Identities=16%  Similarity=0.158  Sum_probs=54.0

Q ss_pred             HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (626)
Q Consensus       400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~  476 (626)
                      -+--....+...|+|++++..-.+||.+++....-++++.    ++-+.+-+|+|.++--+|+.++|+..+..+-++
T Consensus        57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeG----klWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEG----KLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHH----HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccc----hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            3444566677889999999999999999886544443433    344667889999999999999999999988653

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=86.46  E-value=2.1  Score=28.83  Aligned_cols=32  Identities=22%  Similarity=0.420  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHH--HHHHHhcCCC
Q 006908          482 KGLYRRGMAYMALGEFEEAQRD--FEMMMKVDKS  513 (626)
Q Consensus       482 ka~~~~g~a~~~lg~~~eA~~~--~~kAl~l~P~  513 (626)
                      +.+|-+|-.+...|++++|+..  |.-+..++|.
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence            4566677777777777777777  4366666654

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=86.31  E-value=7.9  Score=46.84  Aligned_cols=76  Identities=18%  Similarity=0.208  Sum_probs=54.2

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 006908          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA--HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS  523 (626)
Q Consensus       447 ~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~--~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~  523 (626)
                      ..+|...|..+++.++-++|.....+||..-|.  +....-.-|+.-++.|+-+.++..|+-.|.-.|.- .++|..+.
T Consensus      1564 ~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKR-tDlW~VYi 1641 (1710)
T KOG1070|consen 1564 RKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKR-TDLWSVYI 1641 (1710)
T ss_pred             hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccc-hhHHHHHH
Confidence            346677777777777777777777777777776  66677777777777787777777777777777764 45554443

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.29  E-value=3.7  Score=47.06  Aligned_cols=120  Identities=17%  Similarity=0.196  Sum_probs=75.6

Q ss_pred             HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHH-----cC--CHHHHH
Q 006908          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK-----LG--ECRKSI  467 (626)
Q Consensus       395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~k-----l~--~~~~A~  467 (626)
                      +.......+.|-.++..|+|.+|+++|+.+|-.+.-+.-++.++.....++...+.--+......     ++  ....++
T Consensus       988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ 1067 (1202)
T KOG0292|consen  988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQL 1067 (1202)
T ss_pred             HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHH
Confidence            56677778899999999999999999999987544333344444444444444332112111111     21  233331


Q ss_pred             H--HHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          468 E--ACNKVLDANPAH-VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       468 ~--~~~~aL~~dp~~-~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      +  .|=.-..+.|-+ .-|+...-++++++++|..|.....+.|++.|..
T Consensus      1068 ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~ 1117 (1202)
T KOG0292|consen 1068 ELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSP 1117 (1202)
T ss_pred             HHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC
Confidence            1  111112344543 4455556678999999999999999999999975

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=86.20  E-value=28  Score=32.18  Aligned_cols=111  Identities=16%  Similarity=0.134  Sum_probs=78.0

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      ...+.+......+.++...+...+.. ++.   +.|...           .+-.--|..++..++|.+|+..++.+.+-.
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~A-Lrv---LRP~~~-----------e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~   74 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDA-LRV---LRPEFP-----------ELDLFDGWLHIVRGDWDDALRLLRELEERA   74 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHH-HHH---hCCCch-----------HHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence            44555666666677788887777653 433   556553           245557888999999999999999998888


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (626)
Q Consensus       478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~  526 (626)
                      |..+-+--.++.|+..+++.+-=. +-..+++..++  +++......+.
T Consensus        75 ~~~p~~kALlA~CL~~~~D~~Wr~-~A~evle~~~d--~~a~~Lv~~Ll  120 (160)
T PF09613_consen   75 PGFPYAKALLALCLYALGDPSWRR-YADEVLESGAD--PDARALVRALL  120 (160)
T ss_pred             CCChHHHHHHHHHHHHcCChHHHH-HHHHHHhcCCC--hHHHHHHHHHH
Confidence            988877777889999999876422 34556776665  45555555443

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.17  E-value=2.5  Score=33.92  Aligned_cols=35  Identities=20%  Similarity=0.219  Sum_probs=30.3

Q ss_pred             HHHHHHHhhhchhhccccHHHHHHHHHHHHHhccc
Q 006908          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  430 (626)
Q Consensus       396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~  430 (626)
                      ..|..+..+|..+=+.|+|.+|+.+|..||..|..
T Consensus         4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~   38 (77)
T cd02683           4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQ   38 (77)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            45677788889999999999999999999997654

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.96  E-value=2.1  Score=34.06  Aligned_cols=37  Identities=24%  Similarity=0.325  Sum_probs=31.5

Q ss_pred             HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccC
Q 006908          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV  431 (626)
Q Consensus       395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~  431 (626)
                      .+.|..+..+|..+=+.|+|.+|+.+|++|+..|..+
T Consensus         3 ~~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~   39 (75)
T cd02682           3 EEMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQI   39 (75)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            3467788889999999999999999999999876543

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.95  E-value=14  Score=40.79  Aligned_cols=113  Identities=19%  Similarity=0.303  Sum_probs=66.0

Q ss_pred             cchhhHHHHhhcCCCCCEEEEEecCCCccccCCCCCCCCCCcceeeeeeecccccCCCCCCCChhhHHHHHHHHHhhhch
Q 006908          328 LVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNR  407 (626)
Q Consensus       328 ~v~~gle~~l~~M~~GE~~~~~i~~~~ayg~~~~~~~ip~~~~l~~~vel~~~~~~~~~~~~~~~e~~~~a~~~k~~Gn~  407 (626)
                      +.-..|..++..|-++.+..+.+..-|                                   -.+..++.|...+.+|..
T Consensus       256 qaq~~F~~av~~~d~n~v~~lL~ssPY-----------------------------------HvdsLLqva~~~r~qgD~  300 (665)
T KOG2422|consen  256 QAQRDFYLAVIVHDPNNVLILLISSPY-----------------------------------HVDSLLQVADIFRFQGDR  300 (665)
T ss_pred             HHHHHHHHHHhhcCCcceeeeeccCCc-----------------------------------chhHHHHHHHHHHHhcch
Confidence            456678888888888888877763211                                   224456667766666665


Q ss_pred             hhccccHHHHHHHHHHHHHhcccC------CCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006908          408 LFKEGKFELAKAKYEKVLRDFNHV------NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (626)
Q Consensus       408 ~f~~g~~~~A~~~y~~al~~l~~~------~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~  479 (626)
                      -...+-.++|+-.+.+|+.-.-..      .|....+...+-    .+++.--.-.-+.|.|.-|.+.|.-+|.++|.
T Consensus       301 e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~Fy----L~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~  374 (665)
T KOG2422|consen  301 EMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFY----LALFRYMQSLAQRGCWRTALEWCKLLLSLDPS  374 (665)
T ss_pred             hhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHH----HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCc
Confidence            555555555665666655411000      011111122211    12222223344689999999999999999987

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=85.78  E-value=10  Score=46.01  Aligned_cols=67  Identities=15%  Similarity=0.012  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       448 ~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      ++|..|+-.|.+-+.+++|.+.++..++---+..+.|.+.|..++...+-++|...+++||+.-|..
T Consensus      1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~ 1597 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ 1597 (1710)
T ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh
Confidence            4677788889999999999999999998877889999999999999999999999999999999873

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=85.68  E-value=8.9  Score=40.27  Aligned_cols=108  Identities=15%  Similarity=0.110  Sum_probs=76.0

Q ss_pred             hhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 006908          408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRR  487 (626)
Q Consensus       408 ~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~  487 (626)
                      ....|+|+.|+++......... +.++      .....++.++...|+..+ --+...|..+..+++++.|+.+.+-.--
T Consensus       198 r~~~gdWd~AlkLvd~~~~~~v-ie~~------~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvPaav~A  269 (531)
T COG3898         198 RCAAGDWDGALKLVDAQRAAKV-IEKD------VAERSRAVLLTAKAMSLL-DADPASARDDALEANKLAPDLVPAAVVA  269 (531)
T ss_pred             HHhcCChHHHHHHHHHHHHHHh-hchh------hHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCccchHHHHH
Confidence            4456777777777766554211 1111      122233444444444333 3468999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006908          488 GMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (626)
Q Consensus       488 g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l  525 (626)
                      +.+++..|+..++-..++.+-+.+|.  +++......+
T Consensus       270 Aralf~d~~~rKg~~ilE~aWK~ePH--P~ia~lY~~a  305 (531)
T COG3898         270 ARALFRDGNLRKGSKILETAWKAEPH--PDIALLYVRA  305 (531)
T ss_pred             HHHHHhccchhhhhhHHHHHHhcCCC--hHHHHHHHHh
Confidence            99999999999999999999999997  4555554443

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.68  E-value=2.1  Score=34.22  Aligned_cols=36  Identities=19%  Similarity=0.194  Sum_probs=31.5

Q ss_pred             HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhccc
Q 006908          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  430 (626)
Q Consensus       395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~  430 (626)
                      ++.|..+..+|...=..|+|++|+.+|..||..|..
T Consensus         3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~   38 (75)
T cd02684           3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVP   38 (75)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            567788888999999999999999999999997654

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.48  E-value=2.4  Score=33.83  Aligned_cols=36  Identities=17%  Similarity=0.156  Sum_probs=31.2

Q ss_pred             HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhccc
Q 006908          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  430 (626)
Q Consensus       395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~  430 (626)
                      +..|..+..+|...=+.|+|.+|..+|..+++.|..
T Consensus         3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~   38 (75)
T cd02677           3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLK   38 (75)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            456777888888888999999999999999998765

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=84.65  E-value=11  Score=43.16  Aligned_cols=133  Identities=17%  Similarity=0.171  Sum_probs=92.4

Q ss_pred             CChhhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCC---CCCh--------hHHHHHhhhhhHHHHHHHHHH
Q 006908          389 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN---PQDD--------EEGKVFVGKRNLLHLNVAACL  457 (626)
Q Consensus       389 ~~~~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~---p~~~--------ee~~~~~~~~~~~~~Nla~~~  457 (626)
                      ++.++..-.+-  .--|-.....+..++|.+++.++++.+....   +...        +.......+...++..++.|.
T Consensus       294 l~~~~l~~L~y--~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~  371 (608)
T PF10345_consen  294 LPKEELYALVY--FLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCN  371 (608)
T ss_pred             cCHHHHHHHHH--HHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            45555544433  3346666677777799999999998776654   1111        112234456677888899999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHhcCCCCHHHHHH
Q 006908          458 LKLGECRKSIEACNKVLDANP---------AHVKGLYRRGMAYMALGEFEEAQRDFE--------MMMKVDKSSEPDATA  520 (626)
Q Consensus       458 ~kl~~~~~A~~~~~~aL~~dp---------~~~ka~~~~g~a~~~lg~~~eA~~~~~--------kAl~l~P~~~~~~~~  520 (626)
                      +-+++|..|......+.....         -.+..+|-.|..+...|+.+.|+..|.        .+....+.++-.+-.
T Consensus       372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila  451 (608)
T PF10345_consen  372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA  451 (608)
T ss_pred             HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence            999999999999888776532         247789999999999999999999998        555556655333333


Q ss_pred             HHH
Q 006908          521 ALS  523 (626)
Q Consensus       521 ~l~  523 (626)
                      .|.
T Consensus       452 ~LN  454 (608)
T PF10345_consen  452 ALN  454 (608)
T ss_pred             HHH
Confidence            333

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=84.43  E-value=4.1  Score=32.64  Aligned_cols=35  Identities=14%  Similarity=0.111  Sum_probs=30.4

Q ss_pred             HHHHHHHhhhchhhccccHHHHHHHHHHHHHhccc
Q 006908          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  430 (626)
Q Consensus       396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~  430 (626)
                      ..|..+..+|..+=+.|+|.+|+.+|..|+.+|..
T Consensus         4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~   38 (76)
T cd02681           4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY   38 (76)
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            45777888899999999999999999999997653

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=83.95  E-value=12  Score=41.33  Aligned_cols=103  Identities=22%  Similarity=0.090  Sum_probs=74.1

Q ss_pred             hhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhCCCCHHHHH
Q 006908          407 RLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS-IEACNKVLDANPAHVKGLY  485 (626)
Q Consensus       407 ~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A-~~~~~~aL~~dp~~~ka~~  485 (626)
                      .++..+....|+.....++.    .+|.+           +.++.|+|.+....+..-.+ ...+..++...|+|...+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~l~----~~~~~-----------~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~  140 (620)
T COG3914          76 LLAPLADSTLAFLAKRIPLS----VNPEN-----------CPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLG  140 (620)
T ss_pred             hccccccchhHHHHHhhhHh----cCccc-----------chHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHh
Confidence            33444455555555555555    44443           67899999998887765554 4555568999999988777


Q ss_pred             HH------HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006908          486 RR------GMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (626)
Q Consensus       486 ~~------g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l  525 (626)
                      .+      ++.+..+++..+|..++.++..+.|.+ +.+...+...
T Consensus       141 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~-~~~~~~~~~~  185 (620)
T COG3914         141 HLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKY-PRVLGALMTA  185 (620)
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhh-hhhHhHHHHH
Confidence            76      888889999999999999999999997 4444444333

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=83.51  E-value=8.5  Score=43.42  Aligned_cols=91  Identities=15%  Similarity=0.160  Sum_probs=72.6

Q ss_pred             hhhchhhccc-----cHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcC---CHHHHHHHHHHHH
Q 006908          403 VTGNRLFKEG-----KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG---ECRKSIEACNKVL  474 (626)
Q Consensus       403 ~~Gn~~f~~g-----~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~---~~~~A~~~~~~aL  474 (626)
                      ..|..|++..     ++..|+.+|.+|..    ....             .+.+++|.|+..-.   ++..|..++..|.
T Consensus       293 ~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~----~g~~-------------~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa  355 (552)
T KOG1550|consen  293 GLGRLYLQGLGVEKIDYEKALKLYTKAAE----LGNP-------------DAQYLLGVLYETGTKERDYRRAFEYYSLAA  355 (552)
T ss_pred             HHHHHHhcCCCCccccHHHHHHHHHHHHh----cCCc-------------hHHHHHHHHHHcCCccccHHHHHHHHHHHH
Confidence            4666666532     78899999999988    3322             26778999988766   6789999999886


Q ss_pred             HhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Q 006908          475 DANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVDK  512 (626)
Q Consensus       475 ~~dp~~~ka~~~~g~a~~~----lg~~~eA~~~~~kAl~l~P  512 (626)
                      ..  .+..|.|++|.||..    ..+...|..+|++|.+.++
T Consensus       356 ~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~  395 (552)
T KOG1550|consen  356 KA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN  395 (552)
T ss_pred             Hc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC
Confidence            54  689999999999986    3678999999999999884

>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=83.04  E-value=3.7  Score=32.64  Aligned_cols=36  Identities=17%  Similarity=0.274  Sum_probs=30.3

Q ss_pred             HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhccc
Q 006908          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  430 (626)
Q Consensus       395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~  430 (626)
                      ++.|..+...|...=+.|+|++|+.+|..|+..|..
T Consensus         3 ~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~   38 (75)
T cd02656           3 LQQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQ   38 (75)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            456777778888888899999999999999987654

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=82.71  E-value=2  Score=45.90  Aligned_cols=59  Identities=22%  Similarity=0.472  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006908          450 HLNVAACLLKLGECRKSIEACNKVLDAN---------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK  509 (626)
Q Consensus       450 ~~Nla~~~~kl~~~~~A~~~~~~aL~~d---------p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~  509 (626)
                      ..-+..++.-+|+|..|++..+.+ .++         +.++..+|..|-||+++++|.+|++.|...|-
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677788899999999976653 222         35678899999999999999999999998774

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.70  E-value=3.7  Score=32.72  Aligned_cols=37  Identities=22%  Similarity=0.282  Sum_probs=32.2

Q ss_pred             HHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhccc
Q 006908          394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  430 (626)
Q Consensus       394 ~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~  430 (626)
                      .++.|..+..+|...=..|+|++|+.+|.+|+..|..
T Consensus         2 ~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~   38 (75)
T cd02678           2 FLQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMH   38 (75)
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            3567888889999999999999999999999997654

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=82.62  E-value=14  Score=38.03  Aligned_cols=119  Identities=14%  Similarity=0.136  Sum_probs=82.9

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHH--HHHHHHHHHH
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRK--SIEACNKVLD  475 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~--A~~~~~~aL~  475 (626)
                      |..=.+-|-.+....+|..|..+|-.|.+-+..+...-       ..+  +.+--+-.|...++..++  ++-....+++
T Consensus       209 a~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v-------~A~--~sLKYMlLcKIMln~~ddv~~lls~K~~l~  279 (411)
T KOG1463|consen  209 ATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDV-------KAL--TSLKYMLLCKIMLNLPDDVAALLSAKLALK  279 (411)
T ss_pred             HHHHHhccceeecccccchHHHHHHHHHccccccCCcH-------HHH--HHHHHHHHHHHHhcCHHHHHHHHhhHHHHh
Confidence            44445677777888899999999999998776554321       111  122224456666666655  4555667888


Q ss_pred             hCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 006908          476 ANPAHVKGLYRRGMAYMA--LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (626)
Q Consensus       476 ~dp~~~ka~~~~g~a~~~--lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~  529 (626)
                      ++.....|+--.+.|+.+  +.+|+.|++.|++=|.-||    -++.++..+...+
T Consensus       280 y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~----ivr~Hl~~Lyd~l  331 (411)
T KOG1463|consen  280 YAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP----IVRSHLQSLYDNL  331 (411)
T ss_pred             ccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh----HHHHHHHHHHHHH
Confidence            888899999999999875  6889999999999888764    4666666655433

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=82.45  E-value=2.6  Score=28.81  Aligned_cols=30  Identities=17%  Similarity=0.111  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          448 LLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       448 ~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      .+|..+|-+.+..++|..|+.++.++|++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            378889999999999999999999999864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=82.18  E-value=5  Score=40.16  Aligned_cols=65  Identities=12%  Similarity=0.214  Sum_probs=50.5

Q ss_pred             HHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (626)
Q Consensus       401 ~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL  474 (626)
                      ..+.|.++|+.|+|++|+.+|+.++..+..-         -...+...++..+..|+.++++.+..+..|-+.+
T Consensus       181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e---------gW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  181 SLEMAEEYFRLGDYDKALKLLEPAASSYRRE---------GWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL  245 (247)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC---------CcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            3478999999999999999999997643311         1234556688889999999999999988887765

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=81.95  E-value=13  Score=30.86  Aligned_cols=48  Identities=21%  Similarity=0.290  Sum_probs=36.6

Q ss_pred             HHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 006908          418 KAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (626)
Q Consensus       418 ~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~  480 (626)
                      +...++++.    .+|.+           ..+.+.+|.+++..|+|+.|++.+-.++..++.+
T Consensus         8 ~~al~~~~a----~~P~D-----------~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    8 IAALEAALA----ANPDD-----------LDARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHH----HSTT------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             HHHHHHHHH----cCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            445566666    56766           3477889999999999999999999999998865

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.53  E-value=9.8  Score=43.67  Aligned_cols=33  Identities=27%  Similarity=0.409  Sum_probs=28.6

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcc
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFN  429 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~  429 (626)
                      .++.++..|+.+|++|+|++|...|-+++..++
T Consensus       367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le  399 (933)
T KOG2114|consen  367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE  399 (933)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC
Confidence            356678899999999999999999999987543

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=81.26  E-value=13  Score=44.25  Aligned_cols=104  Identities=14%  Similarity=0.271  Sum_probs=70.8

Q ss_pred             hhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHh
Q 006908          404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL----G---ECRKSIEACNKVLDA  476 (626)
Q Consensus       404 ~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl----~---~~~~A~~~~~~aL~~  476 (626)
                      -.+.+...+.|++|+..|++.-.    ..|.-.|-.        .+.+.+|.+.+..    +   .|.+|+.-+++. .-
T Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  547 (932)
T PRK13184        481 VPDAFLAEKLYDQALIFYRRIRE----SFPGRKEGY--------EAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HG  547 (932)
T ss_pred             CcHHHHhhHHHHHHHHHHHHHhh----cCCCcccch--------HHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cC
Confidence            34455667789999999999887    344432211        1334455554432    2   467777777663 33


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 006908          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAA  521 (626)
Q Consensus       477 dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~  521 (626)
                      -|.-+--|.-.|.+|..+++|++-+++|.-|++--|.+ +.+-..
T Consensus       548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  591 (932)
T PRK13184        548 GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQH-PEISRL  591 (932)
T ss_pred             CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCC-CccHHH
Confidence            45667778889999999999999999999999998876 443333

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=80.63  E-value=17  Score=38.92  Aligned_cols=66  Identities=17%  Similarity=0.172  Sum_probs=46.0

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHH--cCCHHHHHHHHHHHH
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK--LGECRKSIEACNKVL  474 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~k--l~~~~~A~~~~~~aL  474 (626)
                      .+.....++..+|+.++|..|.+.+...+.-    -|....         ...+.+++.+|..  .-+|.+|...++..+
T Consensus       130 ~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~r----l~~~~~---------~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~  196 (379)
T PF09670_consen  130 FGDREWRRAKELFNRYDYGAAARILEELLRR----LPGREE---------YQRYKDLCEGYDAWDRFDHKEALEYLEKLL  196 (379)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCchhh---------HHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            3456667888999999999999999998872    222211         2455666666654  556788888777665


Q ss_pred             H
Q 006908          475 D  475 (626)
Q Consensus       475 ~  475 (626)
                      .
T Consensus       197 ~  197 (379)
T PF09670_consen  197 K  197 (379)
T ss_pred             H
Confidence            4

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=80.60  E-value=4  Score=31.84  Aligned_cols=35  Identities=17%  Similarity=0.236  Sum_probs=30.1

Q ss_pred             HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcc
Q 006908          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFN  429 (626)
Q Consensus       395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~  429 (626)
                      ++.|..+..+|..+=+.|+|.+|+.+|.+|+..|.
T Consensus         2 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~   36 (69)
T PF04212_consen    2 LDKAIELIKKAVEADEAGNYEEALELYKEAIEYLM   36 (69)
T ss_dssp             HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            45677788888888899999999999999998664

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.54  E-value=15  Score=39.65  Aligned_cols=100  Identities=17%  Similarity=0.078  Sum_probs=79.2

Q ss_pred             HHHHHHhhhchhh-ccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 006908          397 EAEKIRVTGNRLF-KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-ECRKSIEACNKVL  474 (626)
Q Consensus       397 ~a~~~k~~Gn~~f-~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~-~~~~A~~~~~~aL  474 (626)
                      +|....+.|..+| -..+++.|..+.++|......+...        ...+...+.-+|.||.... .+..|.....+|+
T Consensus        45 eart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~f--------ydvKf~a~SlLa~lh~~~~~s~~~~KalLrkai  116 (629)
T KOG2300|consen   45 EARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSF--------YDVKFQAASLLAHLHHQLAQSFPPAKALLRKAI  116 (629)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccH--------HhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence            4566667776655 6889999999999999876654332        2344567778999999988 8999999999999


Q ss_pred             HhCCCC----HHHHHHHHHHHHHcCCHHHHHHHH
Q 006908          475 DANPAH----VKGLYRRGMAYMALGEFEEAQRDF  504 (626)
Q Consensus       475 ~~dp~~----~ka~~~~g~a~~~lg~~~eA~~~~  504 (626)
                      ++..++    .|-++.+++.+.-..+|.-|++.+
T Consensus       117 elsq~~p~wsckllfQLaql~~idkD~~sA~elL  150 (629)
T KOG2300|consen  117 ELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELL  150 (629)
T ss_pred             HHhcCCchhhHHHHHHHHHHHhhhccchhHHHHH
Confidence            997554    477889999999999999998874

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=80.42  E-value=16  Score=37.05  Aligned_cols=54  Identities=19%  Similarity=0.204  Sum_probs=48.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006908          453 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEM  506 (626)
Q Consensus       453 la~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~k  506 (626)
                      -+.-....+++..|...+..++..+|.+..+..-++.|+...|+.+.|...|..
T Consensus       140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~  193 (304)
T COG3118         140 EAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA  193 (304)
T ss_pred             HhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence            455567789999999999999999999999999999999999999988876654

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=80.24  E-value=4.5  Score=48.59  Aligned_cols=107  Identities=18%  Similarity=0.148  Sum_probs=86.1

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +..++..+..+.+.+++++|+..-.+|..+.......+..       .....|.|++...+..++...|+..+.+++.+.
T Consensus       973 ~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~-------~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~ 1045 (1236)
T KOG1839|consen  973 ASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSP-------NTKLAYGNLALYEFAVKNLSGALKSLNRALKLK 1045 (1236)
T ss_pred             HHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCH-------HHHHHhhHHHHHHHhccCccchhhhHHHHHHhh
Confidence            5567788888999999999999999988765555444322       235678999999999999999999999998764


Q ss_pred             --------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006908          478 --------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (626)
Q Consensus       478 --------p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~  511 (626)
                              |.-+-..-+++..+..+++++.|+.+++.|++++
T Consensus      1046 ~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1046 LLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred             ccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence                    4445566788888999999999999999999863

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=80.21  E-value=6.5  Score=39.67  Aligned_cols=62  Identities=16%  Similarity=0.095  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006908          466 SIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (626)
Q Consensus       466 A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~  528 (626)
                      |+.+|.+|+.+.|.+-..|..+|..+...++.-+|+-+|-|++-..-.+ +.++.+|..+-.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf-~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPF-PSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB---HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHH
Confidence            6789999999999999999999999999999999999999999876555 5677777776544

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	626
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		1e-29
3jym_A	377	Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk		3e-29
3jym_A	377	Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk		6e-10
3jxv_A	356	Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk		4e-29
3jxv_A	356	Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk		5e-10
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		5e-29
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		1e-25
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		7e-24
2if4_A	338	Crystal Structure Of A Multi-Domain Immunophilin Fr		2e-21
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		2e-11
3o5d_A	264	Crystal Structure Of A Fragment Of Fkbp51 Comprisin		4e-11
3o5d_A	264	Crystal Structure Of A Fragment Of Fkbp51 Comprisin		5e-09
4apo_A	165	Aip Tpr Domain In Complex With Human Tomm20 Peptide		2e-09
3o5e_A	144	Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144		3e-09
4drh_A	144	Co-crystal Structure Of The Ppiase Domain Of Fkbp51		3e-09
3o5l_A	128	Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Le		3e-09
1a17_A	166	Tetratricopeptide Repeats Of Protein Phosphatase 5		3e-09
3o5g_A	128	Fk1 Domain Of Fkbp51, Crystal Form I Length = 128		3e-09
2fbn_A	198	Plasmodium Falciparum Putative Fk506-Binding Protei		1e-08
1wao_1	477	Pp5 Structure Length = 477		2e-08
1n1a_A	140	Crystal Structure Of The N-Terminal Domain Of Human		2e-08
1rot_A	149	Structure Of Fkbp59-I, The N-Terminal Domain Of A 5		2e-08
4drj_A	144	O-crystal Structure Of The Ppiase Domain Of Fkbp52,		3e-08
1q1c_A	280	Crystal Structure Of N(1-260) Of Human Fkbp52 Lengt		3e-08
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		5e-08
1r9h_A	135	Structural Genomics Of C.Elegans: Fkbp-Type Peptidy		5e-08
2bug_A	140	Solution Structure Of The Tpr Domain From Protein P		7e-08
1c9h_A	107	Crystal Structure Of Fkbp12.6 In Complex With Rapam		8e-08
3uqi_A	108	Crystallographic Structure Of Fkbp12 From Aedes Aeg		1e-07
2dg4_A	107	Fk506-Binding Protein Mutant Wf59 Complexed With Ra		5e-07
4aif_A	144	Aip Tpr Domain In Complex With Human Hsp90 Peptide		6e-07
1fkk_A	107	Atomic Structure Of Fkbp12, An Immunophilin Binding		1e-06
3h9r_B	109	Crystal Structure Of The Kinase Domain Of Type I Ac		2e-06
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		2e-06
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		2e-06
1fkb_A	107	Atomic Structure Of The Rapamycin Human Immunophili		2e-06
2fap_A	107	The Structure Of The Immunophilin-Immunosuppressant		2e-06
2dg9_A	107	Fk506-Binding Protein Mutant Wl59 Complexed With Ra		2e-06
1tco_C	107	Ternary Complex Of A Calcineurin A Fragment, Calcin		3e-06
1bkf_A	107	Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX		3e-06
2ppp_A	107	Crystal Structure Of E60q Mutant Of Fkbp12 Length =		4e-06
2ki3_A	126	Structural And Biochemical Characterization Of Fk50		8e-06
2ppo_A	107	Crystal Structure Of E60a Mutant Of Fkbp12 Length =		8e-06
3rkv_A	162	C-Terminal Domain Of Protein C56c10.10, A Putative		8e-06
1bl4_A	107	Fkbp Mutant F36v Complexed With Remodeled Synthetic		9e-06
1eym_A	107	Fk506 Binding Protein Mutant, Homodimeric Complex L		1e-05
2lgo_A	130	Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prol		2e-05
2lgo_A	130	Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prol		3e-05
3lca_A	533	Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term		3e-05
3fp2_A	537	Crystal Structure Of Tom71 Complexed With Hsp82 C-T		3e-05
1yat_A	113	Improved Calcineurin Inhibition By Yeast Fkbp12-Dru		4e-05
3uqa_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		4e-05
3uf8_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		1e-04
3uqb_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		1e-04
2vn1_A	129	Crystal Structure Of The Fk506-Binding Domain Of Pl		1e-04
2ofn_A	135	Solution Structure Of Fk506-Binding Domain (Fkbd)of		1e-04
4ggq_C	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		1e-04
3vaw_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		2e-04
2f4e_A	180	N-Terminal Domain Of Fkbp42 From Arabidopsis Thalia		2e-04
2pbc_A	102	Fk506-Binding Protein 2 Length = 102		2e-04
1pbk_A	116	Homologous Domain Of Human Fkbp25 Length = 116		5e-04
3kz7_A	119	C-Terminal Domain Of Murine Fkbp25 Rapamycin Comple		6e-04
3b7x_A	134	Crystal Structure Of Human Fk506-Binding Protein 6		7e-04
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		7e-04

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score =  127 bits (320), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 111/404 (27%), Positives = 183/404 (45%), Gaps = 27/404 (6%)
Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLI-LSHREGEPYFFTFGKSEVPKG 210
           D GV+K V   G G ETP    +V      K  +GK    SH   EP+ F+ GK +V K 
Sbjct: 30  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 89
Query: 211 LEMGIGTMTREEKAVIYVTSQYLTPS----PLMPVVEGCXXXXXXXXXXXXIQVRDMLGD 266
            ++G+ TM R E   +    +Y   S    P +P                  +  D+  D
Sbjct: 90  WDIGVATMKRGEICHLLCKPEYAYGSAGSLPKIP----SNATLFFEIELLDFKGEDLFED 145
Query: 267 GRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGE 326
           G +I+R  R G+G      P   + + +H +G          +D R       + F+ GE
Sbjct: 146 GGIIRRTKRKGEG---YSNPNEGATVEIHLEGRCGGR----MFDCR------DVAFTVGE 192
Query: 327 GL---VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEK 382
           G    +P G +  +  M   E  ++   P Y + +  +P   +   A + +E+ L  FEK
Sbjct: 193 GEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEK 252
Query: 383 PKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVF 442
            K+   +     +++A  ++  G   FK GK+  A  +Y K++          ++E K  
Sbjct: 253 AKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKAS 312
Query: 443 VGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQR 502
                   LN+A C LKL E  K++E C+K L  + A+ KGLYRRG A + + EFE A+ 
Sbjct: 313 ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKG 372
Query: 503 DFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDK 546
           DFE +++V+  ++  A   +S  +K+ +E   + R+ +  +F K
Sbjct: 373 DFEKVLEVNPQNKA-ARLQISMCQKKAKEHNERDRRIYANMFKK 415

>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 377

Iteration: 1
 Score =  127 bits (318), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 100/344 (29%), Positives = 166/344 (48%), Gaps = 25/344 (7%)
Query: 50  QVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKM 109
           +V  H T   LDG   +S+R     +    +  LG+ +++ G  +GI TM KGE ++F +
Sbjct: 48  EVEVHYTGTLLDGKKFDSSRD----RDDTFKFKLGQGQVIKGWDQGIKTMKKGENALFTI 103
Query: 110 KPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETP 169
            P++ YGE      +P T P +  L F++E++ +   + IA D G+ KK++ EG  WE P
Sbjct: 104 PPELAYGES----GSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDKWENP 159
Query: 170 RAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT 229
           + P EV     A+  DG  ++S  EG    FT     +   L   + TM + EK ++ V 
Sbjct: 160 KDPDEVFVKYEARLEDG-TVVSKSEG--VEFTVKDGHLCPALAKAVKTMKKGEKVLLAVK 216
Query: 230 SQYLTPSPLMPVVEGCXXXXXXXXXXXXIQ------VRDMLGDGRLIKRRIRDGKGEFPM 283
            QY       P                 ++      V ++  D +++K+ +++ +G    
Sbjct: 217 PQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEG---Y 273
Query: 284 DCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPG 343
           + P   +++ V   G L  ++  VF     D   +P EF + E  V EG +  V  M  G
Sbjct: 274 ERPNEGAVVTVKITGKL--QDGTVFLKKGHDEQ-EPFEFKTDEEAVIEGLDRAVLNMKKG 330
Query: 344 EIALVTCPPDYAY--DKFLRPANVPEGAHIQWEIELLGFEKPKD 385
           E+ALVT PP+YAY   +  + A VP  + + +E+EL+ F K K+
Sbjct: 331 EVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVKDKE 374

>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 377

Iteration: 1
 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 284 DCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPG 343
           D P     + VHY G LL+ +K   +D+  D D    +F  G+G V +G++  ++ M  G
Sbjct: 41  DTPEVGDEVEVHYTGTLLDGKK---FDSSRDRD-DTFKFKLGQGQVIKGWDQGIKTMKKG 96
Query: 344 EIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWT--GLSFDGIMDEAEK 400
           E AL T PP+ AY +   P  +P  A +Q+++ELL +   +D    G  F  I+ E +K
Sbjct: 97  ENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDK 155

>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 356

Iteration: 1
 Score =  126 bits (316), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 99/341 (29%), Positives = 164/341 (48%), Gaps = 25/341 (7%)
Query: 50  QVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKM 109
           +V  H T   LDG   +S+R     +    +  LG+ +++ G  +GI TM KGE ++F +
Sbjct: 32  EVEVHYTGTLLDGKKFDSSRD----RDDTFKFKLGQGQVIKGWDQGIKTMKKGENALFTI 87
Query: 110 KPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETP 169
            P++ YGE      +P T P +  L F++E++ +   + IA D G+ KK++ EG  WE P
Sbjct: 88  PPELAYGES----GSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDKWENP 143
Query: 170 RAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT 229
           + P EV     A+  DG  ++S  EG    FT     +   L   + TM + EK ++ V 
Sbjct: 144 KDPDEVFVKYEARLEDG-TVVSKSEG--VEFTVKDGHLCPALAKAVKTMKKGEKVLLAVK 200
Query: 230 SQYLTPSPLMPVVEGCXXXXXXXXXXXXIQ------VRDMLGDGRLIKRRIRDGKGEFPM 283
            QY       P                 ++      V ++  D +++K+ +++ +G    
Sbjct: 201 PQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEG---Y 257
Query: 284 DCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPG 343
           + P   +++ V   G L  ++  VF     D   +P EF + E  V EG +  V  M  G
Sbjct: 258 ERPNEGAVVTVKITGKL--QDGTVFLKKGHDEQ-EPFEFKTDEEAVIEGLDRAVLNMKKG 314
Query: 344 EIALVTCPPDYAY--DKFLRPANVPEGAHIQWEIELLGFEK 382
           E+ALVT PP+YAY   +  + A VP  + + +E+EL+ F K
Sbjct: 315 EVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVK 355

>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 356

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 6/119 (5%)
Query: 284 DCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPG 343
           D P     + VHY G LL+ +K   +D+  D D    +F  G+G V +G++  ++ M  G
Sbjct: 25  DTPEVGDEVEVHYTGTLLDGKK---FDSSRDRD-DTFKFKLGQGQVIKGWDQGIKTMKKG 80
Query: 344 EIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWT--GLSFDGIMDEAEK 400
           E AL T PP+ AY +   P  +P  A +Q+++ELL +   +D    G  F  I+ E +K
Sbjct: 81  ENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDK 139

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score =  125 bits (315), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 110/404 (27%), Positives = 185/404 (45%), Gaps = 27/404 (6%)
Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLI-LSHREGEPYFFTFGKSEVPKG 210
           D GV+K V   G G ETP     V    + K  +GK    SH   EP+ F+ GK +V K 
Sbjct: 30  DRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKA 89
Query: 211 LEMGIGTMTREEKAVIYVTSQYLTPS----PLMPVVEGCXXXXXXXXXXXXIQVRDMLGD 266
            ++G+ TM + E   +    +Y   +    P +P                  +  D+L D
Sbjct: 90  WDIGVATMKKGEICHLLCKPEYAYGATGSLPKIP----SNATLFFEVELLDFKGEDLLED 145
Query: 267 GRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGE 326
           G +I+R  R G+G      P   + + +H +G       +VF       D + + F+ GE
Sbjct: 146 GGIIRRTKRRGEG---YSNPNEGARVQIHLEGRCGG---RVF-------DCRDVAFTVGE 192
Query: 327 GL---VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEK 382
           G    +P G +  +  M   E  ++   P Y + +  +P   +   A + +E+ L  FEK
Sbjct: 193 GEDHDIPIGIDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEK 252
Query: 383 PKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVF 442
            K+   +     +++A  ++  G   FK GK+  A  +Y K++          ++E K  
Sbjct: 253 AKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKAS 312
Query: 443 VGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQR 502
                   LN+A C LKL E  K++E C+K L  + A+ KGLYRRG A + + EFE A+ 
Sbjct: 313 ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKG 372
Query: 503 DFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDK 546
           DFE +++V+  ++  A   +   +K+ +E   + R+ +  +F K
Sbjct: 373 DFEKVLEVNPQNKA-ARLQIFMCQKKAKEHNERDRRTYANMFKK 415

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/324 (27%), Positives = 165/324 (50%), Gaps = 40/324 (12%)
Query: 263 MLGDGRLIKRRIRDGKGEF-PMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
           M  DG +I+R    G+G   P +  + +  L  +YK  L               D + L 
Sbjct: 21  MEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLF--------------DQRELR 66
Query: 322 FSSGEGL---VPEGFEMCVRLMLPGEIALVTCPPDYAY-----DKFLRPANVPEGAHIQW 373
           F  GEG    +P G E  ++ M  GE ++V   P YA+     +KF     +P  A +++
Sbjct: 67  FEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKF----QIPPNAELKY 122
Query: 374 EIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNP 433
           E+ L  FEK K+   ++ +  ++++  ++  G   FKEGK++ A  +Y+K++    + + 
Sbjct: 123 ELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS 182
Query: 434 QDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA 493
             +EE +     R   HLN+A C LKL     +IE+CNK L+ +  + KGL+RRG A++A
Sbjct: 183 FSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLA 242
Query: 494 LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVE---SKARKQFKGLFDKKPGE 550
           + +FE A+ DF+ ++++     P+  AA ++L   +Q +    ++ +K +  +F++   E
Sbjct: 243 VNDFELARADFQKVLQLY----PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEE 298
Query: 551 ISEVGIENQGEDQAAGKNENDDSE 574
                 EN+ + +A+  +   D+E
Sbjct: 299 ------ENKAKAEASSGDHPTDTE 316

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score =  108 bits (271), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 162/324 (50%), Gaps = 40/324 (12%)
Query: 263 MLGDGRLIKRRIRDGKGEF-PMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
           M  DG +I+R    G+G   P +  + +  L  +YK  L               D + L 
Sbjct: 21  MEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLF--------------DQRELR 66
Query: 322 FSSGEGL---VPEGFEMCVRLMLPGEIALVTCPPDYAY-----DKFLRPANVPEGAHIQW 373
           F  GEG    +P G E  ++    GE ++V   P YA+     +KF     +P  A +++
Sbjct: 67  FEIGEGENLDLPYGLERAIQRXEKGEHSIVYLKPSYAFGSVGKEKF----QIPPNAELKY 122
Query: 374 EIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNP 433
           E+ L  FEK K+    + +  ++++  ++  G   FKEGK++ A  +Y+K++    + + 
Sbjct: 123 ELHLKSFEKAKESWEXNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS 182
Query: 434 QDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA 493
             +EE +     R   HLN+A C LKL     +IE+CNK L+ +  + KGL RRG A++A
Sbjct: 183 FSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLA 242
Query: 494 LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVE---SKARKQFKGLFDKKPGE 550
           + +FE A+ DF+ ++++     P+  AA ++L   +Q +    ++ +K +  +F++   E
Sbjct: 243 VNDFELARADFQKVLQLY----PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEE 298
Query: 551 ISEVGIENQGEDQAAGKNENDDSE 574
                 EN+ + +A+  +   D+E
Sbjct: 299 ------ENKAKAEASSGDHPTDTE 316

>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From Arabidopsis Thaliana Length = 338

Iteration: 1
 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 98/300 (32%), Positives = 147/300 (49%), Gaps = 36/300 (12%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           D ++ K+ I++G G  P       S   +HY+    N + K F DT   ++ QP+E   G
Sbjct: 48  DEKVSKQIIKEGHGSKPSKY----STCFLHYRAWTKNSQHK-FEDTW--HEQQPIELVLG 100
Query: 326 -EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDK---FLRPANVPEGAHIQWEIELLGFE 381
            E     G  + V  M  GE ALV    + AY K   F  P NVP  A + +E+E++GF+
Sbjct: 101 KEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFP-NVPPMADLLYEVEVIGFD 159
Query: 382 KPKDWTGLSFDGIMDE----AEKIRVTGNRLFKEGKFELAKAKYEKVLR----DFN---H 430
           + K+    S D  ++E    A++ ++ GN LFKE K E A  +YE  +     DF    +
Sbjct: 160 ETKEGKARS-DMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLY 218
Query: 431 VNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA 490
              QD     + +  +N  HLN+AACL+KL    ++I  CN VL     + K L+RRG A
Sbjct: 219 GKYQD-----MALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKA 273
Query: 491 YMALGEFEEAQRDFEMMMKVDKSSEPDATA---ALSKLKKQRQEVESKARKQFKGLFDKK 547
              LG+ + A+ DF    K      PD  A    L  L +Q + +  K ++ +KG+F  K
Sbjct: 274 KAELGQMDSARDDFRKAQKY----APDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGK 329

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 83/154 (53%), Gaps = 6/154 (3%)
Query: 392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLR--DFNHVNPQDDEEGKVFVGKRNLL 449
           D I+  +E ++  GN  FK   +E+A  KY KVLR  + +    +D +  K+     + +
Sbjct: 217 DKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCV 276
Query: 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509
            LN+ AC LK+ + + ++++C + L+ +P++ K LYRR   +  L E+++A  D +   +
Sbjct: 277 -LNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335
Query: 510 V---DKSSEPDATAALSKLKKQRQEVESKARKQF 540
           +   DK+ + +      K+K Q+ + ++   K F
Sbjct: 336 IAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMF 369

>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The Fk1 And Fk2 Domains Length = 264

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 79/158 (50%), Gaps = 13/158 (8%)
Query: 78  PIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFE 137
           P    LGK +++     G+ TM KGE+     KP+  YG       +    P +  L FE
Sbjct: 80  PFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYG----SAGSLPKIPSNATLFFE 135
Query: 138 IEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEP 197
           IE++DF K + + +D G++++   +G+G+  P     V+  +  + G G++     +   
Sbjct: 136 IELLDF-KGEDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRCG-GRMF----DCRD 189
Query: 198 YFFTFGKSE---VPKGLEMGIGTMTREEKAVIYVTSQY 232
             FT G+ E   +P G++  +  M REE+ ++Y+  +Y
Sbjct: 190 VAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRY 227

>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The Fk1 And Fk2 Domains Length = 264

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 101/245 (41%), Gaps = 27/245 (11%)
Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLI-LSHREGEPYFFTFGKSEVPKG 210
           D GV+K V   G G ETP    +V      K  +GK    SH   EP+ F+ GK +V K 
Sbjct: 34  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKA 93
Query: 211 LEMGIGTMTREEKAVIYVTSQYLTPS----PLMPVVEGCXXXXXXXXXXXXIQVRDMLGD 266
            ++G+ TM + E   +    +Y   S    P +P                  +  D+  D
Sbjct: 94  WDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIP----SNATLFFEIELLDFKGEDLFED 149
Query: 267 GRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGE 326
           G +I+R  R G+G      P   + + +H +G          +D R       + F+ GE
Sbjct: 150 GGIIRRTKRKGEG---YSNPNEGATVEIHLEGRCGGR----MFDCR------DVAFTVGE 196
Query: 327 GL---VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEK 382
           G    +P G +  +  M   E  ++   P Y + +  +P   +   A + +E+ L  FEK
Sbjct: 197 GEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEK 256
Query: 383 PKD-W 386
            K+ W
Sbjct: 257 AKESW 261

>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide Length = 165

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/147 (25%), Positives = 77/147 (52%), Gaps = 3/147 (2%)
Query: 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVG---KRNLLHLNVAACL 457
           I   GNRL++EG  + A AKY   +    ++  ++      ++    +   L LN   C 
Sbjct: 17  IHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLLLNYCQCK 76
Query: 458 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPD 517
           L + E  + ++ C+ +L+    +VK  ++RG A+ A+   +EAQ DF  ++++D +  P 
Sbjct: 77  LVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDPALAPV 136
Query: 518 ATAALSKLKKQRQEVESKARKQFKGLF 544
            +  L  L+ + ++ + + + +F+G+F
Sbjct: 137 VSRELQALEARIRQKDEEDKARFRGIF 163

>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           D  ++K   R G GE   + P+    + VHYKG L N +K   +D+  D + +P  FS G
Sbjct: 34  DRGVLKIVKRVGNGE---ETPMIGDKVYVHYKGKLSNGKK---FDSSHDRN-EPFVFSLG 86
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           +G V + +++ V  M  GEI  + C P+YAY        +P  A + +EIELL F+
Sbjct: 87  KGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK 142

>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51, Rapamycin And The Frb Fragment Of Mtor At Low Ph Length = 144

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           D  ++K   R G GE   + P+    + VHYKG L N +K   +D+  D + +P  FS G
Sbjct: 34  DRGVLKIVKRVGNGE---ETPMIGDKVYVHYKGKLSNGKK---FDSSHDRN-EPFVFSLG 86
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           +G V + +++ V  M  GEI  + C P+YAY        +P  A + +EIELL F+
Sbjct: 87  KGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK 142

>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           D  ++K   R G GE   + P+    + VHYKG L N +K   +D+  D + +P  FS G
Sbjct: 18  DRGVLKIVKRVGNGE---ETPMIGDKVYVHYKGKLSNGKK---FDSSHDRN-EPFVFSLG 70
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           +G V + +++ V  M  GEI  + C P+YAY        +P  A + +EIELL F+
Sbjct: 71  KGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK 126

>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 15/119 (12%)
Query: 392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHL 451
           DG +  AE+++   N  FK   +E A   Y + +     +NP +     ++ G R+L +L
Sbjct: 7   DGALKRAEELKTQANDYFKAKDYENAIKFYSQAI----ELNPSN----AIYYGNRSLAYL 58
Query: 452 NVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510
                   LG+  ++IE   K       ++KG YRR  + MALG+F  A RD+E ++KV
Sbjct: 59  RTECYGYALGDATRAIELDKK-------YIKGYYRRAASNMALGKFRAALRDYETVVKV 110

>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           D  ++K   R G GE   + P+    + VHYKG L N +K   +D+  D + +P  FS G
Sbjct: 18  DRGVLKIVKRVGNGE---ETPMIGDKVYVHYKGKLSNGKK---FDSSHDRN-EPFVFSLG 70
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           +G V + +++ V  M  GEI  + C P+YAY        +P  A + +EIELL F+
Sbjct: 71  KGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK 126

>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein Pfl2275c, C-Terminal Tpr-Containing Domain Length = 198

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 78/154 (50%), Gaps = 12/154 (7%)
Query: 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNL---LHLNVAACL 457
           I+  GN  FK+ +   A  KY++ L  F H    DD+   +   K+N+    +LN+A C 
Sbjct: 41  IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ--ILLDKKKNIEISCNLNLATCY 98
Query: 458 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS--- 514
            K  +  K+I+  +KVL  +  +VK LY+ G+A M  G  EEA+ +      ++ ++   
Sbjct: 99  NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 158
Query: 515 EPDATAALSKLKKQRQEVESKARKQFKGLFDKKP 548
                  ++KLK+ R+    K +  F G+FDK P
Sbjct: 159 RNSYELCVNKLKEARK----KDKLTFGGMFDKGP 188

>pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 20/175 (11%)
Query: 393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLN 452
           G +  AE+++   N  FK   +E A   Y + +     +NP +     ++ G R+L +L 
Sbjct: 1   GALKRAEELKTQANDYFKAKDYENAIKFYSQAIE----LNPSN----AIYYGNRSLAYLR 52
Query: 453 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 512
                  LG+  ++IE   K       ++KG YRR  + MALG+F  A RD+E ++KV  
Sbjct: 53  TECYGYALGDATRAIELDKK-------YIKGYYRRAASNMALGKFRAALRDYETVVKV-- 103
Query: 513 SSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGIENQG-EDQAAG 566
             +P    A  K ++  + V+ KA ++     + K   +  + IE+   ED+ +G
Sbjct: 104 --KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSG 156

>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52 Length = 140

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 7/116 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           D  ++K   R+G G    + P+    + VHY G LL+  K   +D+ +D   +   F  G
Sbjct: 30  DEGVLKVIKREGTG---TEMPMIGDRVFVHYTGWLLDGTK---FDSSLDRKDK-FSFDLG 82
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           +G V + +++ +  M  GE+  +TC P+YAY     P  +P  A + +E+EL  F+
Sbjct: 83  KGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK 138

>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda Fk506-Binding Protein, Nmr, Minimized Average Structure Length = 149

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 7/116 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           D  ++K   R+G G    + P+    + VHY G LL+  K   +D+ +D   +   F  G
Sbjct: 29  DEGVLKVIKREGTG---TETPMIGDRVFVHYTGWLLDGTK---FDSSLDRKDK-FSFDLG 81
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           +G V + +++ V  M  GE+  +TC P+YAY     P  +P  A + +E+EL  F+
Sbjct: 82  KGEVIKAWDIAVATMKVGELCRITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK 137

>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52, Rapamycin And The Frb Fragment Of Mtor Length = 144

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 7/116 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           D  ++K   R+G G    + P+    + VHY G LL+  K   +D+ +D   +   F  G
Sbjct: 34  DEGVLKVIKREGTG---TEMPMIGDRVFVHYTGWLLDGTK---FDSSLDRKDK-FSFDLG 86
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           +G V + +++ +  M  GE+  +TC P+YAY     P  +P  A + +E+EL  F+
Sbjct: 87  KGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK 142

>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52 Length = 280

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 96/243 (39%), Gaps = 24/243 (9%)
Query: 152 DFGVVKKVINEGQGWETP----RAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEV 207
           D GV+K +  EG G E P    R       W+   T   K   S    + + F  GK EV
Sbjct: 50  DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGT---KFDSSLDRKDKFSFDLGKGEV 106
Query: 208 PKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCXXXXXXXXXXXXIQVRDMLG-- 265
            K  ++ I TM   E   I    +Y   S   P                  +  D+    
Sbjct: 107 IKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKGEDLTEEE 166
Query: 266 DGRLIKRRIRDGKGEF-PMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSS 324
           DG +I+R    G+G   P +  + +  L  +YK  L ++ +  F            E   
Sbjct: 167 DGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRF------------EIGE 214
Query: 325 GEGL-VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEK 382
           GE L +P G E  ++ M  GE ++V   P YA+    +    +P  A +++E+ L  FEK
Sbjct: 215 GENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEK 274
Query: 383 PKD 385
            K+
Sbjct: 275 AKE 277

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 15/118 (12%)
Query: 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACL 457
           A++ +  GN  FK+G        Y   +R +N    +D E          +L+ N AACL
Sbjct: 13  AQEEKNKGNEYFKKGD-------YPTAMRHYNEAVKRDPENA--------ILYSNRAACL 57
Query: 458 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
            KL E +++++ C+  +  +   +KG  R+    +A+ E+ +AQR +E  ++VD S+E
Sbjct: 58  TKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115

>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl Isomerase Length = 135

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           DG ++K   ++G+G   +  P   + + VHY G L N  K   +D+  D  G    F+ G
Sbjct: 13  DGGVLKLIKKEGQG---VVKPTTGTTVKVHYVGTLENGTK---FDSSRDR-GDQFSFNLG 65
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELL 378
            G V +G+++ V  M  GE+A  T   DY Y     P  +P GA + +E+EL 
Sbjct: 66  RGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELF 118

>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin Length = 107

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
           P       VHY GML N +K   +D+  D + +P +F  G+  V +GFE     M  G+ 
Sbjct: 16  PKKGQTCVVHYTGMLQNGKK---FDSSRDRN-KPFKFRIGKQEVIKGFEEGAAQMSLGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           A +TC PD AY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTCTPDVAYGATGHPGVIPPNATLIFDVELLNLE 107

>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti Length = 108

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
           P    +  VHY G L   + KVF  +R    G+P  F+ G G V  G++  V  M  G+ 
Sbjct: 17  PKAGQVAVVHYTGTL--ADGKVFDSSRTR--GKPFRFTVGRGEVIRGWDEGVAQMSVGQR 72
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           A + C PDYAY     P  +P  A + +++ELL  E
Sbjct: 73  AKLVCSPDYAYGSRGHPGVIPPNATLTFDVELLRVE 108

>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin Length = 107

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
           P       VHY GML  E+ K F  +R  N  +P +F  G+  V  GFE  V  M  G+ 
Sbjct: 16  PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGFEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide Length = 144

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 66/131 (50%), Gaps = 3/131 (2%)
Query: 401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVG---KRNLLHLNVAACL 457
           I   GNRL++EG  + A AKY   +    ++  ++      ++    +   L LN   C 
Sbjct: 11  IHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLLLNYCQCK 70
Query: 458 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPD 517
           L + E  + ++ C+ +L+    +VK  ++RG A+ A+   +EAQ DF  ++++D +  P 
Sbjct: 71  LVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDPALAPV 130
Query: 518 ATAALSKLKKQ 528
            +  L  L+ +
Sbjct: 131 VSRELQALEAR 141

>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding Protein Length = 107

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
           P       VHY GML  E+ K F  +R  N  +P +F  G+  V  G+E  V  M  G+ 
Sbjct: 16  PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFVLGKQEVIRGWEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTISPDYAYGATGHPGIIPPNATLIFDVELLKLE 107

>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin Length = 109

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
           P       VHY GML  E+ K F  +R  N  +P +F  G+  V  G+E  V  M  G+ 
Sbjct: 18  PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGWEEGVAQMSVGQR 73
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 74  AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 109

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 12/117 (10%)
Query: 399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLL 458
           E++R  GN LFK G +  A A Y + L       PQD          + +LH N AAC L
Sbjct: 29  EQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQD----------QAVLHRNRAACHL 76
Query: 459 KLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
           KL +  K+    +K ++ +   VK LYRR  A   LG  ++A  D +  + ++  ++
Sbjct: 77  KLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNK 133

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 22/142 (15%)
Query: 393 GIMD---EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLL 449
           G MD    AE  +  GN  +K+G ++ A   Y+K L     ++P +              
Sbjct: 1   GAMDPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALE----LDPNNASA----------- 45
Query: 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509
             N+     K G+ +K+IE   K L+ +P + K  YRRG AY   G++++A  D++  ++
Sbjct: 46  WYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALE 105
Query: 510 VDKSSEPDATAALSKLKKQRQE 531
           +D    P+   A   L   +Q+
Sbjct: 106 LD----PNNAKAKQNLGNAKQK 123

>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp- 12 Complex Length = 107

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
           P       VHY GML  E+ K F  +R  N  +P +F  G+  V  G+E  V  M  G+ 
Sbjct: 16  PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGWEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With Huma Length = 107

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
           P       VHY GML  E+ K F  +R  N  +P +F  G+  V  G+E  V  M  G+ 
Sbjct: 16  PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGWEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin Length = 107

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
           P       VHY GML  E+ K F  +R  N  +P +F  G+  V  G E  V  M  G+ 
Sbjct: 16  PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGLEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin B, Fkbp12 And The Immunosuppressant Drug Fk506 (tacrolimus) Length = 107

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
           P       VHY GML  E+ K F  +R  N  +P +F  G+  V  G+E  V  M  G+ 
Sbjct: 16  PKAGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGWEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH Immunosuppressant Fk506 Length = 107

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
           P       VHY GML  E+ K F  +R  N  +P +F  G+  V  G+E  V  M  G+ 
Sbjct: 16  PKRGQTCVVHYTGML--EDGKKFDSSRDKN--KPFKFMLGKQEVIRGWEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTISPDYAYGATGVPGIIPPHATLVFDVELLKLE 107

>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12 Length = 107

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
           P       VHY GML  E+ K F  +R  N  +P +F  G+  V  G++  V  M  G+ 
Sbjct: 16  PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGWQEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506 Binding Domain From Plasmodium Vivax Length = 126

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           DG ++K  +R G+G    + P   + + VHY G L     KVF  +R  N   P +F  G
Sbjct: 14  DGGVVKTILRKGEGG-EENAPKKGNEVTVHYVGKL-ESSGKVFDSSRERN--VPFKFHLG 69
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 380
           +G V +G+++CV  M   E   V     Y Y +     ++P  + + +EIEL+ F
Sbjct: 70  QGEVIKGWDICVASMTKNEKCSVRLDSKYGYGEEGCGESIPGNSVLIFEIELISF 124

>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12 Length = 107

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
           P       VHY GML  E+ K F  +R  N  +P +F  G+  V  G+   V  M  G+ 
Sbjct: 16  PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGWAEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative Peptidylprolyl Isomerase, From Caenorhabditis Elegans Length = 162

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 82/160 (51%), Gaps = 11/160 (6%)
Query: 392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDD--EEGKVFVGKRNL- 448
           D  +   E +R  GN LF +  ++ A   Y   L   + +  ++   E   V + ++N+ 
Sbjct: 5   DDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIP 64
Query: 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508
           L+ N++ C L +G+  ++ E  ++VL     + K L+RR  A +A  + +EA+ D ++++
Sbjct: 65  LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124
Query: 509 KVDKSSEPDATAALSK----LKKQRQEVESKARKQFKGLF 544
           +    + P A + +++    + ++R E ++ +R  +  +F
Sbjct: 125 R----NHPAAASVVAREMKIVTERRAEKKADSRVTYSKMF 160

>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand Length = 107

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
           P       VHY GML  + KKV  D+  D + +P +F  G+  V  G+E  V  M  G+ 
Sbjct: 16  PKRGQTCVVHYTGML-EDGKKV--DSSRDRN-KPFKFMLGKQEVIRGWEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex Length = 107

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 286 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 345
           P       VHY GML + +K    D+  D + +P +F  G+  V  G+E  V  M  G+ 
Sbjct: 16  PKRGQTCVVHYTGMLEDGKK---MDSSRDRN-KPFKFMLGKQEVIRGWEEGVAQMSVGQR 71
Query: 346 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 72  AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl Cis-Trans Isomerase From Giardia Lamblia, Seattle Structural Genomics Center For Infectious Disease Target Gilaa.00840.A Length = 130

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 157 KKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGI 215
           KKV+  G G   P+A  +V      +  DGK   S R  G+P+ FT G  EV KG + G+
Sbjct: 28  KKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGV 87
Query: 216 GTMTREEKAVIYVTSQ 231
            TMT  EKA+  +  Q
Sbjct: 88  ATMTLGEKALFTIPYQ 103

>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl Cis-Trans Isomerase From Giardia Lamblia, Seattle Structural Genomics Center For Infectious Disease Target Gilaa.00840.A Length = 130

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 292 LCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCP 351
           + VHY G     + K F  +R  + G+P +F+ G G V +G++  V  M  GE AL T P
Sbjct: 46  VTVHYDGRF--PDGKQFDSSR--SRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFTIP 101
Query: 352 PDYAYDKFLRPANVPEGAHIQWEIELL 378
              AY +   P  +P  A + +E+ELL
Sbjct: 102 YQLAYGERGYPPVIPPKATLVFEVELL 128

>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMM 507
           + + N++AC +  G+  K IE   K L+  P H K L RR  A  +LG F +A  D  ++
Sbjct: 56  VFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL 115

>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMM 507
           + + N++AC +  G+  K IE   K L+  P H K L RR  A  +LG F +A  D  ++
Sbjct: 60  VFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL 119

>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug Complexes. Crystallographic And Functional Analysis Length = 113

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           +G +   RI  G G      P    L+ +HY G L N +K   +D+ VD  G P + + G
Sbjct: 5   EGNVKIDRISPGDGA---TFPKTGDLVTIHYTGTLENGQK---FDSSVDR-GSPFQCNIG 57
Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELL 378
            G V +G+++ +  +  GE A +T P  YAY     P  +P  + + +++ELL
Sbjct: 58  VGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELL 110

>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation A54e From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 292 LCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCP 351
           + VHY G L + +K   +D+  D +  P EF  G G+V +G++  V+ M  G +  +T P
Sbjct: 125 VSVHYTGWLTDGQK---FDSSKDRN-DPFEFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 352 PDYAYDKFLRPANVPEGAHIQWEIELL 378
           P   Y        +P  A + +E+ELL
Sbjct: 181 PQLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With A G95a Surface Mutation From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 292 LCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCP 351
           + VHY G L + +K   +D+  D +  P  F  G G+V +G++  V+ M  G +  +T P
Sbjct: 125 VSVHYTGWLTDGQK---FDSSKDRN-DPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 352 PDYAYDKFLRPANVPEGAHIQWEIELL 378
           P   Y        +P  A + +E+ELL
Sbjct: 181 PQLGYGARGAAGVIPPNATLVFEVELL 207

>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation D44g From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 292 LCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCP 351
           + VHY G L + +K  F  ++  ND  P  F  G G+V +G++  V+ M  G +  +T P
Sbjct: 125 VSVHYTGWLTDGQK--FGSSKDRND--PFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 352 PDYAYDKFLRPANVPEGAHIQWEIELL 378
           P   Y        +P  A + +E+ELL
Sbjct: 181 PQLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Plasmodium Falciparum Fkbp35 In Complex With Fk506 Length = 129

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 4/119 (3%)
Query: 262 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
           ++  DG +IK  ++ G  E   + P   + + VHY G L  E     +D+  D +  P +
Sbjct: 11  ELTADGGVIKTILKKGD-EGEENIPKKGNEVTVHYVGKL--ESTGKVFDSSFDRN-VPFK 66
Query: 322 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 380
           F   +G V +G+++CV  M   E  LV     Y Y       ++P  + + +EIELL F
Sbjct: 67  FHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125

>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35 From Plasmodium Falciparum Length = 135

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 4/119 (3%)
Query: 262 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
           ++  DG +IK  ++ G  E   + P   + + VHY G L  E     +D+  D +  P +
Sbjct: 11  ELTADGGVIKTILKKGD-EGEENIPKKGNEVTVHYVGKL--ESTGKVFDSSFDRN-VPFK 66
Query: 322 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 380
           F   +G V +G+++CV  M   E  LV     Y Y       ++P  + + +EIELL F
Sbjct: 67  FHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125

>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed With Cj40 Length = 209

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 292 LCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCP 351
           + VHY G L + +K   +D+  D +  P  F  G G+V +G++  V+ M  G +  +T P
Sbjct: 125 VSVHYTGWLTDGQK---FDSSKDRN-DPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 352 PDYAYDKFLRPANVPEGAHIQWEIELL 378
           P   Y        +P  A + +E+ELL
Sbjct: 181 PQLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation V3i From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 292 LCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCP 351
           + VHY G L + +K   +D+  D +  P  F  G G+V +G++  V+ M  G +  +T P
Sbjct: 125 VSVHYTGWLTDGQK---FDSSKDRN-DPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 352 PDYAYDKFLRPANVPEGAHIQWEIELL 378
           P   Y        +P  A + +E+ELL
Sbjct: 181 PQLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|2F4E|A Chain A, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana Length = 180

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 62/124 (50%), Gaps = 12/124 (9%)
Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           D ++ K+ I++G G  P       S   +HY+    N + K F DT   ++ QP+E   G
Sbjct: 48  DEKVSKQIIKEGHGSKPSKY----STCFLHYRAWTKNSQHK-FEDTW--HEQQPIELVLG 100
Query: 326 -EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDK---FLRPANVPEGAHIQWEIELLGFE 381
            E     G  + V  M  GE ALV    + AY K   F  P NVP  A + +E+E++GF+
Sbjct: 101 KEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFP-NVPPMADLLYEVEVIGFD 159
Query: 382 KPKD 385
           + K+
Sbjct: 160 ETKE 163

>pdb|2PBC|A Chain A, Fk506-Binding Protein 2 Length = 102

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 291 LLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTC 350
           +L +HY G L   E    +D+ +  + QP  FS G G V +G++  +  M  GE   +  
Sbjct: 11  VLHMHYTGKL---EDGTEFDSSLPQN-QPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVI 66
Query: 351 PPDYAYDKFLRPANVPEGAHIQWEIELLGFEK 382
           P +  Y +   P  +P GA + +E+ELL  E+
Sbjct: 67  PSELGYGERGAPPKIPGGATLVFEVELLKIER 98

>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25 Length = 116

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 54  HC--TVRTLDGVIVES---TRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFK 108
           HC  T    DG + ++   T ++      P+   +G  K++ G  E + TM KGE +  +
Sbjct: 24  HCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLE 83
Query: 109 MKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143
           ++P+  YG+   P A     P + +L FE+E++D 
Sbjct: 84  IEPEWAYGKKGQPDAK---IPPNAKLTFEVELVDI 115

>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex Length = 119

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 54  HC--TVRTLDGVIVES---TRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFK 108
           HC  T    DG + ++   T S+      P+   +G  K++ G  E + TM KGE +  +
Sbjct: 27  HCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLE 86
Query: 109 MKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143
           ++P+  YG+   P A     P + +L FE+E++D 
Sbjct: 87  IEPEWAYGKKGQPDAK---IPPNTKLIFEVELVDI 118

>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6 Length = 134

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 7/122 (5%)
Query: 259 QVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQ 318
           ++ D+ GD  ++K  IR+G G    D    D+ + V Y G L + ++   +D+       
Sbjct: 18  RMLDISGDRGVLKDVIREGAG----DLVAPDASVLVKYSGYLEHMDRP--FDSNYFRK-T 70
Query: 319 PLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELL 378
           P     GE +   G E+ +  M  GE+A     P+YAY     P  +P    + +EIELL
Sbjct: 71  PRLMKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLFEIELL 130
Query: 379 GF 380
            F
Sbjct: 131 DF 132

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 15/123 (12%)
Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           D A  ++  GN  F++G +  A   Y + ++     NP+D +           L+ N AA
Sbjct: 14  DLALMVKNKGNECFQKGDYPQAMKHYTEAIKR----NPKDAK-----------LYSNRAA 58
Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
           C  KL E + +++ C + +   P  +KG  R+  A  A+ ++ +A   ++  + +D S +
Sbjct: 59  CYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK 118
Query: 516 PDA 518
             A
Sbjct: 119 EAA 121

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	626
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	5e-99
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	1e-25
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	3e-85
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	3e-17
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	7e-13
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	1e-76
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	8e-12
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	7e-11
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	1e-69
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	1e-11
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	1e-10
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	3e-47
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	6e-44
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	3e-35
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	2e-31
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	2e-27
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	4e-15
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	3e-28
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	6e-26
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	1e-24
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	2e-24
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	6e-24
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	6e-24
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	1e-23
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	9e-16
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	2e-11
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	4e-23
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	4e-23
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	5e-22
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	2e-21
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	6e-21
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	2e-14
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	4e-10
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-20
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-15
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-14
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	7e-07
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	4e-20
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	4e-20
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	7e-20
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-17
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-14
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-09
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	1e-19
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	2e-15
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	8e-09
2l6j_A	111	TPR repeat-containing protein associated with HSP;	5e-18
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	1e-17
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	3e-17
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	3e-14
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	3e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-16
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-12
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-09
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-16
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-06
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	2e-16
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	8e-15
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	7e-10
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	3e-16
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	6e-15
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	2e-08
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	4e-16
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	1e-13
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	4e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-16
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-12
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-09
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-04
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	1e-15
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	1e-11
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	4e-07
2ppn_A	107	FK506-binding protein 1A; high resolution protein	1e-15
2ppn_A	107	FK506-binding protein 1A; high resolution protein	8e-14
2ppn_A	107	FK506-binding protein 1A; high resolution protein	3e-08
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	3e-15
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	5e-14
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	6e-09
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	3e-15
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	6e-14
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	7e-09
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	4e-15
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	5e-09
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	4e-04
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	4e-15
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	7e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-14
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	2e-14
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	3e-13
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	3e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-13
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	5e-13
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	2e-13
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	4e-13
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	4e-08
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	6e-13
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	1e-06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	6e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-11
3u4t_A	272	TPR repeat-containing protein; structural genomics	9e-09
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-08
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-08
3u4t_A	272	TPR repeat-containing protein; structural genomics	8e-06
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	4e-11
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	1e-07
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	6e-04
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	5e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-06
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	6e-11
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	1e-07
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	5e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	7e-11
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	7e-09
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	9e-11
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-10
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-09
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-10
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-10
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-08
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-10
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-10
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	7e-10
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	8e-10
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	9e-07
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-10
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	7e-09
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-06
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-10
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	5e-10
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-09
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-05
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	8e-10
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	8e-05
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	2e-09
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	5e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-09
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-09
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	5e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	8e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	9e-05
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-09
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-09
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	8e-09
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	5e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	7e-04
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	2e-09
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	1e-06
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	2e-09
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	7e-07
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-09
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	6e-08
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-09
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-08
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	9e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	5e-09
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-06
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	6e-09
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	6e-06
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	7e-09
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-06
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-06
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	8e-09
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	1e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-08
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	2e-05
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	4e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-08
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	4e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-06
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	4e-08
3k9i_A	117	BH0479 protein; putative protein binding protein,	1e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	4e-08
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	7e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-07
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-06
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	3e-04
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	2e-07
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	5e-04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	1e-06
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	2e-04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	3e-06
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	1e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	8e-04
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	9e-06
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	1e-05
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	1e-05
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	9e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-05
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	3e-05
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	5e-05
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	5e-04
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	6e-05
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	3e-04
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	8e-04
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	4e-04
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	7e-04
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	4e-04
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	4e-04
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	5e-04
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	6e-04

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  309 bits (792), Expect = 5e-99
 Identities = 112/475 (23%), Positives = 202/475 (42%), Gaps = 27/475 (5%)

Query: 124 APSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKT 183
                 K+ E      + +  +      D GV+K V   G G ETP    +V      K 
Sbjct: 2   TTDEGAKNNEESPTATVAEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKL 61

Query: 184 GDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLT-PSPLMPV 241
            +GK   S  +  EP+ F+ GK +V K  ++G+ TM R E   +    +Y    +  +P 
Sbjct: 62  SNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICHLLCKPEYAYGSAGSLPK 121

Query: 242 VEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLL 301
           +     + FE+EL+           G + + + +      P +     + + +H +G   
Sbjct: 122 IPSNATLFFEIELLDFKGEDLFEDGGIIRRTKRKGEGYSNPNEG----ATVEIHLEGRC- 176

Query: 302 NEEKKVFYDTRVDNDGQPLEFSSGEGL---VPEGFEMCVRLMLPGEIALVTCPPDYAY-D 357
               ++F       D + + F+ GEG    +P G +  +  M   E  ++   P Y + +
Sbjct: 177 --GGRMF-------DCRDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGE 227

Query: 358 KFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELA 417
                  +   A + +E+ L  FEK K+   +     +++A  ++  G   FK GK+  A
Sbjct: 228 AGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQA 287

Query: 418 KAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 477
             +Y K++          ++E K          LN+A C LKL E  K++E C+K L  +
Sbjct: 288 VIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347

Query: 478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKAR 537
            A+ KGLYRRG A + + EFE A+ DFE +++V+  ++  A   +S  +K+ +E   + R
Sbjct: 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK-AARLQISMCQKKAKEHNERDR 406

Query: 538 KQFKGLFDKKPGEISEVGIENQGEDQAAGKNENDDSEQESDGDEAQEFHEAAAEA 592
           + +  +F K   + ++       E   A   +  +      G ++Q   E   E 
Sbjct: 407 RIYANMFKKFAEQDAKE------EANKAMGKKTSEGVTNEKGTDSQAMEEEKPEG 455

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  109 bits (273), Expect = 1e-25
 Identities = 62/266 (23%), Positives = 117/266 (43%), Gaps = 21/266 (7%)

Query: 2   AVEDEDINPQKKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLD 61
             ++ + +P    A   +D    K     ++K V R G G+ TP  GD+V  H   +  +
Sbjct: 6   GAKNNEESPTATVAEQGEDITSKK--DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSN 63

Query: 62  GVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCP 121
           G   +S+      +  P    LGK +++     G+ TM +GE+     KP+  YG     
Sbjct: 64  GKKFDSSHD----RNEPFVFSLGKGQVIKAWDIGVATMKRGEICHLLCKPEYAYGSAGS- 118

Query: 122 VAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISA 181
                  P +  L FEIE++DF K + + +D G++++   +G+G+  P     V+  +  
Sbjct: 119 ---LPKIPSNATLFFEIELLDF-KGEDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEG 174

Query: 182 KTGDGKLILSHREGEPYFFTFGK---SEVPKGLEMGIGTMTREEKAVIYVTSQYL--TPS 236
           + G         +     FT G+    ++P G++  +  M REE+ ++Y+  +Y      
Sbjct: 175 RCGGRMF-----DCRDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAG 229

Query: 237 PLMPVVEGCEEVHFEVELVHLIQVRD 262
                +E   E+ +EV L    + ++
Sbjct: 230 KPKFGIEPNAELIYEVTLKSFEKAKE 255

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score =  269 bits (690), Expect = 3e-85
 Identities = 107/367 (29%), Positives = 176/367 (47%), Gaps = 25/367 (6%)

Query: 24  MKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVL 83
            +I    L K +++ G G  TP  GD+V  H T   LDG   +S+R     +    +  L
Sbjct: 6   NEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRD----RDDTFKFKL 61

Query: 84  GKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143
           G+ +++ G  +GI TM KGE ++F + P++ YGE   P     T P +  L F++E++ +
Sbjct: 62  GQGQVIKGWDQGIKTMKKGENALFTIPPELAYGESGSPP----TIPANATLQFDVELLSW 117

Query: 144 AKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFG 203
              + IA D G+ KK++ EG  WE P+ P EV     A+  DG ++          FT  
Sbjct: 118 TSVRDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSE---GVEFTVK 174

Query: 204 KSEVPKGLEMGIGTMTREEKAVIYVTSQY------LTPSPLMPVVEGCEEVHFEVELVHL 257
              +   L   + TM + EK ++ V  QY         +     V     +  ++ELV  
Sbjct: 175 DGHLCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSW 234

Query: 258 IQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDG 317
             V ++  D +++K+ +++ +     + P   +++ V   G L +    VF     D + 
Sbjct: 235 KTVTEIGDDKKILKKVLKEXE---GYERPNEGAVVTVKITGKLQD--GTVFLKKGHD-EQ 288

Query: 318 QPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDK--FLRPANVPEGAHIQWEI 375
           +P EF + E  V EG +  V  M  GE+ALVT PP+YAY      + A VP  + + +E+
Sbjct: 289 EPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEV 348

Query: 376 ELLGFEK 382
           EL+ F K
Sbjct: 349 ELVSFVK 355

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score = 82.9 bits (205), Expect = 3e-17
 Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 12/164 (7%)

Query: 264 LGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFS 323
           +G   L K+ +++G+G    D P     + VHY G LL+   K F  +R  +     +F 
Sbjct: 8   IGKQGLKKKLLKEGEGW---DTPEVGDEVEVHYTGTLLD--GKKFDSSR--DRDDTFKFK 60

Query: 324 SGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKP 383
            G+G V +G++  ++ M  GE AL T PP+ AY +   P  +P  A +Q+++ELL +   
Sbjct: 61  LGQGQVIKGWDQGIKTMKKGENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSV 120

Query: 384 KDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRD 427
           +D             +KI   G++       +    KYE  L D
Sbjct: 121 RDI-----AKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLED 159

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score = 69.5 bits (170), Expect = 7e-13
 Identities = 27/129 (20%), Positives = 52/129 (40%), Gaps = 7/129 (5%)

Query: 18  EDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDG-VIVESTRSEYGGKG 76
                        ++K V++   G   P++G  V    T +  DG V ++    E     
Sbjct: 233 SWKTVTEIGDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDE----Q 288

Query: 77  IPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHF 136
            P      +  ++ GL   +  M KGEV++  + P+  YG  +      +  P +  + +
Sbjct: 289 EPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESK--QDAIVPPNSTVIY 346

Query: 137 EIEMIDFAK 145
           E+E++ F K
Sbjct: 347 EVELVSFVK 355

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  246 bits (630), Expect = 1e-76
 Identities = 85/331 (25%), Positives = 165/331 (49%), Gaps = 18/331 (5%)

Query: 262 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
            M  DG +I+R    G+G      P   +++ V  +G   ++   +F       D + L 
Sbjct: 20  HMEEDGGIIRRIQTRGEGY---AKPNEGAIVEVALEGYYKDK---LF-------DQRELR 66

Query: 322 FSSGEGL---VPEGFEMCVRLMLPGEIALVTCPPDYAYDKF-LRPANVPEGAHIQWEIEL 377
           F  GEG    +P G E  ++ M  GE ++V   P YA+         +P  A +++E+ L
Sbjct: 67  FEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHL 126

Query: 378 LGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE 437
             FEK K+   ++ +  ++++  ++  G   FKEGK++ A  +Y+K++    + +   +E
Sbjct: 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNE 186

Query: 438 EGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF 497
           E +     R   HLN+A C LKL     +IE+CNK L+ +  + KGL RRG A++A+ +F
Sbjct: 187 EAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDF 246

Query: 498 EEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGIE 557
           E A+ DF+ ++++  ++   A   L+  +++ +   ++ +K +  +F++   E ++   E
Sbjct: 247 ELARADFQKVLQLYPNN-KAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAE 305

Query: 558 NQGEDQAAGKNENDDSEQESDGDEAQEFHEA 588
               D        ++ +  + G ++Q   EA
Sbjct: 306 ASSGDHPTDTEMKEEQKSNTAGSQSQVETEA 336

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 66.1 bits (161), Expect = 8e-12
 Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 16/122 (13%)

Query: 29  GSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLG---K 85
           G +++ +   G G + P++G  V         D +  +            +R  +G    
Sbjct: 25  GGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQR----------ELRFEIGEGEN 74

Query: 86  SKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAK 145
             +  GL   I  M KGE S+  +KP   +G            P + EL +E+ +  F K
Sbjct: 75  LDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKE---KFQIPPNAELKYELHLKSFEK 131

Query: 146 AK 147
           AK
Sbjct: 132 AK 133

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 63.0 bits (153), Expect = 7e-11
 Identities = 22/129 (17%), Positives = 48/129 (37%), Gaps = 16/129 (12%)

Query: 139 EMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPY 198
                     + +D G+++++   G+G+  P     V+  +     D        +    
Sbjct: 17  RGSH------MEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLF-----DQREL 65

Query: 199 FFTFG---KSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMP--VVEGCEEVHFEVE 253
            F  G     ++P GLE  I  M + E +++Y+   Y   S       +    E+ +E+ 
Sbjct: 66  RFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELH 125

Query: 254 LVHLIQVRD 262
           L    + ++
Sbjct: 126 LKSFEKAKE 134

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  228 bits (582), Expect = 1e-69
 Identities = 92/340 (27%), Positives = 153/340 (45%), Gaps = 26/340 (7%)

Query: 217 TMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRD 276
           T T ++++ I      +  S          +V  E E+           D ++ K+ I++
Sbjct: 9   TQTHDQESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEV----------LDEKVSKQIIKE 58

Query: 277 GKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG-EGLVPEGFEM 335
           G G  P       S   +HY+    N +   F DT   ++ QP+E   G E     G  +
Sbjct: 59  GHGSKPSKY----STCFLHYRAWTKNSQH-KFEDTW--HEQQPIELVLGKEKKELAGLAI 111

Query: 336 CVRLMLPGEIALVTCPPDYAYDKFLRPA--NVPEGAHIQWEIELLGFEKPK---DWTGLS 390
            V  M  GE ALV    + AY K    +  NVP  A + +E+E++GF++ K     + ++
Sbjct: 112 GVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMT 171

Query: 391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLR--DFNHVNPQDDEEGKVFVGKRNL 448
            +  +  A++ ++ GN LFKE K E A  +YE  +     + +     +   + +  +N 
Sbjct: 172 VEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNP 231

Query: 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508
            HLN+AACL+KL    ++I  CN VL     + K L+RRG A   LG+ + A+ DF    
Sbjct: 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQ 291

Query: 509 KVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKP 548
           K            L  L +Q + +  K ++ +KG+F  K 
Sbjct: 292 KYAPDD-KAIRRELRALAEQEKALYQKQKEMYKGIFKGKD 330

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 65.8 bits (160), Expect = 1e-11
 Identities = 30/156 (19%), Positives = 59/156 (37%), Gaps = 9/156 (5%)

Query: 107 FKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGW 166
            + + Q H  E +      +    +     E  +     ++    D  V K++I EG G 
Sbjct: 5   LEHQTQTHDQESEIVTEGSAVVHSEPS--QEGNVPPKVDSEAEVLDEKVSKQIIKEGHG- 61

Query: 167 ETPRAPYEVKAWISAKTGDGKLIL--SHREGEPYFFTFGKS-EVPKGLEMGIGTMTREEK 223
             P           A T + +     +  E +P     GK  +   GL +G+ +M   E+
Sbjct: 62  SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGER 121

Query: 224 AVIYVTSQYL---TPSPLMPVVEGCEEVHFEVELVH 256
           A+++V  +       +   P V    ++ +EVE++ 
Sbjct: 122 ALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIG 157

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 62.7 bits (152), Expect = 1e-10
 Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 9/147 (6%)

Query: 9   NPQKKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDG-VIVES 67
            P ++           +++   + K +++ G G   PS       H    T +     E 
Sbjct: 29  EPSQEGNVPPKVDSEAEVLDEKVSKQIIKEGHGS-KPSKYSTCFLHYRAWTKNSQHKFED 87

Query: 68  TRSEYGGKGIPIRHVLGKS-KILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPS 126
           T  E      PI  VLGK  K L GL  G+ +M  GE ++  +  ++ YG++     +  
Sbjct: 88  TWHE----QQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNF--SFP 141

Query: 127 TFPKDEELHFEIEMIDFAKAKIIADDF 153
             P   +L +E+E+I F + K      
Sbjct: 142 NVPPMADLLYEVEVIGFDETKEGKARS 168

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score =  164 bits (416), Expect = 3e-47
 Identities = 48/175 (27%), Positives = 79/175 (45%), Gaps = 3/175 (1%)

Query: 376 ELLGFEKPKDWTG-LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQ 434
           E L F+  K      + +  +  A  I+  GN  FK+ +   A  KY++ L  F H    
Sbjct: 15  ENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW 74

Query: 435 DDEEGKVFVGK-RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA 493
           DD+             +LN+A C  K  +  K+I+  +KVL  +  +VK LY+ G+A M 
Sbjct: 75  DDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMY 134

Query: 494 LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKP 548
            G  EEA+ +      ++ ++  D   +      + +E   K +  F G+FDK P
Sbjct: 135 FGFLEEAKENLYKAASLNPNN-LDIRNSYELCVNKLKEARKKDKLTFGGMFDKGP 188

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score =  153 bits (388), Expect = 6e-44
 Identities = 33/158 (20%), Positives = 73/158 (46%), Gaps = 3/158 (1%)

Query: 390 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNP---QDDEEGKVFVGKR 446
           + D  +   E +R  GN LF +  ++ A   Y   L   + +       + E      K 
Sbjct: 3   AEDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKN 62

Query: 447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEM 506
             L+ N++ C L +G+  ++ E  ++VL     + K L+RR  A +A  + +EA+ D ++
Sbjct: 63  IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKL 122

Query: 507 MMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLF 544
           +++   ++       +  + ++R E ++ +R  +  +F
Sbjct: 123 LLRNHPAAASVVAREMKIVTERRAEKKADSRVTYSKMF 160

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  135 bits (342), Expect = 3e-35
 Identities = 40/156 (25%), Positives = 76/156 (48%), Gaps = 2/156 (1%)

Query: 390 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE-GKVFVGKRNL 448
             D I+  +E ++  GN  FK   +E+A  KY KVLR         ++  G         
Sbjct: 215 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALS 274

Query: 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508
             LN+ AC LK+ + + ++++C + L+ +P++ K LYRR   +  L E+++A  D +   
Sbjct: 275 CVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQ 334

Query: 509 KVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLF 544
           ++         A L K+K++ +  + K +  +  +F
Sbjct: 335 EIAPED-KAIQAELLKVKQKIKAQKDKEKAAYAKMF 369

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score =  122 bits (308), Expect = 2e-31
 Identities = 67/267 (25%), Positives = 102/267 (38%), Gaps = 27/267 (10%)

Query: 130 KDEELHFEIEMIDFAKAKI-IADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKL 188
           K  E   +   +      I    D GV+K +  EG G E P     V    +    DG  
Sbjct: 27  KATESGAQSAPLPMEGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTK 86

Query: 189 ILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEG 244
             S  +  + + F  GK EV K  ++ I TM   E   I    +Y      SP  P +  
Sbjct: 87  FDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSP--PKIPP 144

Query: 245 CEEVHFEVELVHLIQVRD--MLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLN 302
              + FEVEL              G + + + R      P +     +++ V  +G   +
Sbjct: 145 NATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKPNE----GAIVEVALEGYYKD 200

Query: 303 EEKKVFYDTRVDNDGQPLEFSSGEGLV---PEGFEMCVRLMLPGEIALVTCPPDYAY-DK 358
              K+F       D + L F  GEG     P G E  ++ M  GE ++V   P YA+   
Sbjct: 201 ---KLF-------DQRELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSV 250

Query: 359 FLRPANVPEGAHIQWEIELLGFEKPKD 385
                 +P  A +++E+ L  FEK K+
Sbjct: 251 GKEKFQIPPNAELKYELHLKSFEKAKE 277

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score =  111 bits (279), Expect = 2e-27
 Identities = 59/270 (21%), Positives = 104/270 (38%), Gaps = 22/270 (8%)

Query: 1   MAVEDEDINPQKKKAPSEDDKRRMKIV-PGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRT 59
            A E +      + AP   +   +       ++K + R G G   P  GD+V  H T   
Sbjct: 22  TAEEMKATESGAQSAPLPMEGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWL 81

Query: 60  LDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDD 119
           LDG   +S+      +       LGK +++      I TM  GEV     KP+  YG   
Sbjct: 82  LDGTKFDSSLD----RKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAG 137

Query: 120 CPVAAPSTFPKDEELHFEIEMID-FAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAW 178
               +P   P +  L FE+E+ +   +     +D G+++++   G+G+  P     V+  
Sbjct: 138 ----SPPKIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVA 193

Query: 179 ISAKTGDGKLILSHREGEPYFFTFGKSEV---PKGLEMGIGTMTREEKAVIYVTSQYL-- 233
           +     D        +     F  G+ E    P GLE  I  M + E +++Y+   Y   
Sbjct: 194 LEGYYKDKLF-----DQRELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFG 248

Query: 234 -TPSPLMPVVEGCEEVHFEVELVHLIQVRD 262
                    +    E+ +E+ L    + ++
Sbjct: 249 SVGKEKF-QIPPNAELKYELHLKSFEKAKE 277

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score = 74.9 bits (184), Expect = 4e-15
 Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 7/136 (5%)

Query: 265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSS 324
            D  ++K   R+G G    + P+    + VHY G LL+     F  +   +      F  
Sbjct: 49  QDEGVLKVIKREGTGT---EMPMIGDRVFVHYTGWLLD--GTKFDSSL--DRKDKFSFDL 101

Query: 325 GEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPK 384
           G+G V + +++ +  M  GE+  +TC P+YAY     P  +P  A + +E+EL  F+   
Sbjct: 102 GKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKGED 161

Query: 385 DWTGLSFDGIMDEAEK 400
                    I     +
Sbjct: 162 LTEEEDGGIIRRIQTR 177

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  109 bits (275), Expect = 3e-28
 Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 13/133 (9%)

Query: 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVA 454
               E++R  GN LFK G +  A A Y + L     ++    ++          LH N A
Sbjct: 25  ASSVEQLRKEGNELFKCGDYGGALAAYTQALG----LDATPQDQAV--------LHRNRA 72

Query: 455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514
           AC LKL +  K+    +K ++ +   VK LYRR  A   LG  ++A  D +  + ++  +
Sbjct: 73  ACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN 132

Query: 515 EPDATAALSKLKK 527
           +     AL  +  
Sbjct: 133 K-VFQEALRNISG 144

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score =  102 bits (256), Expect = 6e-26
 Identities = 32/146 (21%), Positives = 60/146 (41%), Gaps = 19/146 (13%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
             A++++  GNRLF   K+  A A Y + +      NP              + + N A 
Sbjct: 7   PSAQELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLVA-----------VYYTNRAL 51

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
           C LK+ +  +++  C + L+ +   VK  +  G   + +  ++EA  + +    + K   
Sbjct: 52  CYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 111

Query: 516 P----DATAALSKLKKQRQEVESKAR 537
                D  +AL   KK+R     + R
Sbjct: 112 LNFGDDIPSALRIAKKKRWNSIEERR 137

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 98.4 bits (246), Expect = 1e-24
 Identities = 30/134 (22%), Positives = 61/134 (45%), Gaps = 16/134 (11%)

Query: 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVA 454
           M++  +++  GN+    G  + A   Y + ++    ++P +           ++L+ N +
Sbjct: 1   MEQVNELKEKGNKALSVGNIDDALQCYSEAIK----LDPHN-----------HVLYSNRS 45

Query: 455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514
           A   K G+ +K+ E   K +D  P   KG  R+  A   L  FEEA+R +E  +K + ++
Sbjct: 46  AAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105

Query: 515 EPDATAALSKLKKQ 528
                  L  ++ +
Sbjct: 106 P-QLKEGLQNMEAR 118

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 97.7 bits (244), Expect = 2e-24
 Identities = 28/139 (20%), Positives = 58/139 (41%), Gaps = 17/139 (12%)

Query: 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC 456
           +AE+ R+ G   F +  +  A   Y ++++      P+D              + N AA 
Sbjct: 3   KAEEARLEGKEYFTKSDWPNAVKAYTEMIK----RAPED-----------ARGYSNRAAA 47

Query: 457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP 516
           L KL    ++I  CNK ++ +P  V+   R+  A +A+ E+  A    +     D   E 
Sbjct: 48  LAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDA--EV 105

Query: 517 DATAALSKLKKQRQEVESK 535
           +  ++  ++ +   +   +
Sbjct: 106 NNGSSAREIDQLYYKASQQ 124

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score =  101 bits (252), Expect = 6e-24
 Identities = 40/223 (17%), Positives = 80/223 (35%), Gaps = 24/223 (10%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
             A++++  GNRLF   K+  A A Y + +      NP              + + N A 
Sbjct: 2   PSAQELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLVA-----------VYYTNRAL 46

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK--- 512
           C LK+ +  +++  C + L+ +   VK  +  G   + +  ++EA  + +    + K   
Sbjct: 47  CYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106

Query: 513 -SSEPDATAALSKLKKQRQEVESKARKQFKG-----LFDKKPGEISEVGIENQGEDQAAG 566
            +   D  +AL   KK+R     + R   +      L      E      E Q   +   
Sbjct: 107 LNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHE 166

Query: 567 KNENDDSEQESDGDEAQEFHEAAAEAPRKGCSTAFGLPVEDYF 609
            + +  ++Q     +  ++     E   +         + DY 
Sbjct: 167 DDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKKRDIPDYL 209

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 96.5 bits (241), Expect = 6e-24
 Identities = 33/132 (25%), Positives = 68/132 (51%), Gaps = 16/132 (12%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           + A++ +  GN  FK+G +  A   Y + ++     +P++            +L+ N AA
Sbjct: 11  ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK----RDPEN-----------AILYSNRAA 55

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
           CL KL E +++++ C+  +  +   +KG  R+    +A+ E+ +AQR +E  ++VD S+E
Sbjct: 56  CLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115

Query: 516 PDATAALSKLKK 527
            +A   +    +
Sbjct: 116 -EAREGVRNCLR 126

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135

 Score = 95.5 bits (238), Expect = 1e-23
 Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 11/130 (8%)

Query: 262 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
           D+LG+G L K+ +  G        P+   ++ VH +  L N        TRV      L 
Sbjct: 12  DILGNGLLRKKTLVPGPP--GSSRPVKGQVVTVHLQTSLEN-------GTRVQE-EPELV 61

Query: 322 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAY-DKFLRPANVPEGAHIQWEIELLGF 380
           F+ G+  V +  ++ V LM  GE A+VT    Y Y  +  R   +P  A +  E+ L   
Sbjct: 62  FTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTA 121

Query: 381 EKPKDWTGLS 390
               D     
Sbjct: 122 VDRPDLEMSG 131

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135

 Score = 73.5 bits (181), Expect = 9e-16
 Identities = 27/140 (19%), Positives = 43/140 (30%), Gaps = 13/140 (9%)

Query: 15  APSEDDKRRMKIVP-GSLMKAVMRPG-GGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEY 72
           +     +  + I+  G L K  + PG  G S P  G  V  H      +G  V+      
Sbjct: 2   SSGSSGEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEP--- 58

Query: 73  GGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDE 132
                 +   LG   ++  L   +P M  GE +M     +  YG            P   
Sbjct: 59  -----ELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSR---SPYIPPHA 110

Query: 133 ELHFEIEMIDFAKAKIIADD 152
            L  E+ +        +   
Sbjct: 111 ALCLEVTLKTAVDRPDLEMS 130

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 23/126 (18%), Positives = 41/126 (32%), Gaps = 14/126 (11%)

Query: 149 IADDFGVVKKVINEGQG-WETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEV 207
           I  +  + KK +  G      P     V   +     +G  +          FT G  +V
Sbjct: 13  ILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQE---EPELVFTLGDCDV 69

Query: 208 PKGLEMGIGTMTREEKAVIYVTSQY------LTPSPLMPVVEGCEEVHFEVELVHLIQVR 261
            + L++ +  M   E A++   S+Y             P +     +  EV L   +   
Sbjct: 70  IQALDLSVPLMDVGETAMVTADSKYCYGPQGSRS----PYIPPHAALCLEVTLKTAVDRP 125

Query: 262 DMLGDG 267
           D+   G
Sbjct: 126 DLEMSG 131

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 95.5 bits (238), Expect = 4e-23
 Identities = 31/142 (21%), Positives = 62/142 (43%), Gaps = 16/142 (11%)

Query: 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVA 454
           +  AE+++   N  FK   +E A   Y + +     +NP +            + + N +
Sbjct: 10  LKRAEELKTQANDYFKAKDYENAIKFYSQAIE----LNPSNA-----------IYYGNRS 54

Query: 455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514
              L+      ++    + ++ +  ++KG YRR  + MALG+F  A RD+E ++KV    
Sbjct: 55  LAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 114

Query: 515 EPDATAALSKLKKQRQEVESKA 536
           + DA     +  K  ++   + 
Sbjct: 115 K-DAKMKYQECNKIVKQKAFER 135

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 94.2 bits (235), Expect = 4e-23
 Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 16/134 (11%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           D A  ++  GN  F++G +  A   Y + ++     NP+D             L+ N AA
Sbjct: 14  DLALMVKNKGNECFQKGDYPQAMKHYTEAIK----RNPKD-----------AKLYSNRAA 58

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
           C  KL E + +++ C + +   P  +KG  R+  A  A+ ++ +A   ++  + +D S +
Sbjct: 59  CYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK 118

Query: 516 PDATAALSKLKKQR 529
            +A     +    +
Sbjct: 119 -EAADGYQRCMMAQ 131

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 91.1 bits (227), Expect = 5e-22
 Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 23/143 (16%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
            EAE+++  GN   K   FE A   Y K +     +NP +                N AA
Sbjct: 10  AEAERLKTEGNEQMKVENFEAAVHFYGKAIE----LNPANAV-----------YFCNRAA 54

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
              KLG    +++ C + +  +PA+ K   R G+A  +L +  EA   ++  +++D  +E
Sbjct: 55  AYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNE 114

Query: 516 PDATAALSKLKKQRQEVESKARK 538
                     K   +  E K R+
Sbjct: 115 --------TYKSNLKIAELKLRE 129

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 90.6 bits (225), Expect = 2e-21
 Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 16/145 (11%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
            E++K++  GN      ++  A   Y + L     + P +            +   N AA
Sbjct: 9   PESDKLKSEGNAAMARKEYSKAIDLYTQALS----IAPAN-----------PIYLSNRAA 53

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
                G+  K+ E        +P + K   R G+A   + +++ A+  +E  ++ + +  
Sbjct: 54  AYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGG 113

Query: 516 PDAT-AALSKLKKQRQEVESKARKQ 539
            DA    L   K++ +E    A   
Sbjct: 114 SDAMKRGLETTKRKIEEANRGAEPP 138

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118

 Score = 87.3 bits (217), Expect = 6e-21
 Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 10/120 (8%)

Query: 262 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
           D+LG+G L K+ +  G        P+   ++ VH +  L N        TRV  +   L 
Sbjct: 8   DILGNGLLRKKTLVPGPP--GSSRPVKGQVVTVHLQTSLEN-------GTRVQ-EEPELV 57

Query: 322 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           F+ G+  V +  ++ V LM  GE A+VT    Y Y    R   +P  A +  E+ L    
Sbjct: 58  FTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGRSPYIPPHAALCLEVTLKTAV 117

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118

 Score = 69.2 bits (170), Expect = 2e-14
 Identities = 26/116 (22%), Positives = 37/116 (31%), Gaps = 13/116 (11%)

Query: 29  GSLMKAVMRPG-GGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSK 87
           G L K  + PG  G S P  G  V  H      +G  V+            +   LG   
Sbjct: 13  GLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEP--------ELVFTLGDCD 64

Query: 88  ILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143
           ++  L   +P M  GE +M     +  YG            P    L  E+ +   
Sbjct: 65  VIQALDLSVPLMDVGETAMVTADSKYCYGPQ----GRSPYIPPHAALCLEVTLKTA 116

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118

 Score = 56.5 bits (137), Expect = 4e-10
 Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 9/111 (8%)

Query: 149 IADDFGVVKKVINEGQG-WETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEV 207
           I  +  + KK +  G      P     V   +     +G  +          FT G  +V
Sbjct: 9   ILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQE---EPELVFTLGDCDV 65

Query: 208 PKGLEMGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEGCEEVHFEVELV 255
            + L++ +  M   E A++   S+Y          P +     +  EV L 
Sbjct: 66  IQALDLSVPLMDVGETAMVTADSKYCYGPQGRS--PYIPPHAALCLEVTLK 114

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 93.1 bits (232), Expect = 1e-20
 Identities = 30/155 (19%), Positives = 61/155 (39%), Gaps = 20/155 (12%)

Query: 382 KPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKV 441
                   +    + +  K+  +   L ++G++  A +KYE V++      P   E    
Sbjct: 218 DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK----TEPSVAEY--- 270

Query: 442 FVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQ 501
                      +  C  K  +  ++I  C++VL   P +V  L  R  AY+    ++EA 
Sbjct: 271 ----TVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAI 326

Query: 502 RDFEMMMKVDKSSEPDATA------ALSKLKKQRQ 530
           +D+E   + +++   D         A   LK+ ++
Sbjct: 327 QDYEAAQEHNEN---DQQIREGLEKAQRLLKQSQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 78.1 bits (193), Expect = 1e-15
 Identities = 25/141 (17%), Positives = 56/141 (39%), Gaps = 16/141 (11%)

Query: 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC 456
           + EK    G +L   G+   A +++   +      +P +              +   A  
Sbjct: 2   DVEKHLELGKKLLAAGQLADALSQFHAAVD----GDPDNYI-----------AYYRRATV 46

Query: 457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP 516
            L +G+ + ++    KV+           +RG   +  G+ +EA+ DF+ ++K + S   
Sbjct: 47  FLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE-Q 105

Query: 517 DATAALSKLKKQRQEVESKAR 537
           +   A S+L K  +    +++
Sbjct: 106 EEKEAESQLVKADEMQRLRSQ 126

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 73.1 bits (180), Expect = 4e-14
 Identities = 30/159 (18%), Positives = 52/159 (32%), Gaps = 22/159 (13%)

Query: 382 KPKD---WTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE 438
            P +       S     DE +++R      F    +  A    +K+L     V   D E 
Sbjct: 101 NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE----VCVWDAE- 155

Query: 439 GKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFE 498
                     L    A C +K GE RK+I            + +  Y+    Y  LG+ E
Sbjct: 156 ----------LRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHE 205

Query: 499 EAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKAR 537
            +  +    +K+D     D     +  K+ ++  +    
Sbjct: 206 LSLSEVRECLKLD----QDHKRCFAHYKQVKKLNKLIES 240

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 50.7 bits (122), Expect = 7e-07
 Identities = 18/137 (13%), Positives = 41/137 (29%), Gaps = 31/137 (22%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
                KEG+   A +  +   +    +   + E               ++    +LG+  
Sbjct: 161 AECFIKEGEPRKAISDLKAASK----LKSDNTE-----------AFYKISTLYYQLGDHE 205

Query: 465 KSIEACNKVLDANPAH------------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 512
            S+    + L  +  H            +  L       +  G + +A   +E +MK + 
Sbjct: 206 LSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE- 264

Query: 513 SSEPDATAALSKLKKQR 529
              P       + K++ 
Sbjct: 265 ---PSVAEYTVRSKERI 278

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 85.8 bits (213), Expect = 4e-20
 Identities = 25/139 (17%), Positives = 51/139 (36%), Gaps = 24/139 (17%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           D A   +  GN  +K+  FE A   Y+K +     ++P +              + N AA
Sbjct: 6   DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIE----LDPSNIT-----------FYNNKAA 50

Query: 456 CLLKLGECRKSIEACNKVLDANPAH-------VKGLYRRGMAYMALGEFEEAQRDFEMMM 508
              +  +  + ++ C K ++             K + R G A+    +   A + F   +
Sbjct: 51  VYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSL 110

Query: 509 KVDKSSEPDATAALSKLKK 527
              +   P+    + +L+K
Sbjct: 111 SEFRD--PELVKKVKELEK 127

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 85.8 bits (213), Expect = 4e-20
 Identities = 28/144 (19%), Positives = 54/144 (37%), Gaps = 24/144 (16%)

Query: 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC 456
           +A K +  GN  +K+  F+ A   Y+K       ++P +                N AA 
Sbjct: 3   QALKEKELGNDAYKKKDFDTALKHYDKAKE----LDPTN-----------MTYITNQAAV 47

Query: 457 LLKLGECRKSIEACNKVLDANPAH-------VKGLYRRGMAYMALGEFEEAQRDFEMMMK 509
             + G+  K  E C K ++    +        K   R G +Y    ++++A   +   + 
Sbjct: 48  YFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA 107

Query: 510 VDKSSEPDATAALSKLKKQRQEVE 533
             ++  PD      + +K  +E E
Sbjct: 108 EHRT--PDVLKKCQQAEKILKEQE 129

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 91.7 bits (228), Expect = 7e-20
 Identities = 29/151 (19%), Positives = 64/151 (42%), Gaps = 12/151 (7%)

Query: 393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLN 452
             + +  K+  +   L ++G++  A +KYE V++      P   E               
Sbjct: 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMK----TEPSIAEY-------TVRSKER 300

Query: 453 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 512
           +  C  K  +  ++I  C++VL   P +V  L  R  AY+    ++EA +D+E   + ++
Sbjct: 301 ICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE 360

Query: 513 SSEPDATAALSKLKKQRQEVESKARKQFKGL 543
           +        L K ++  ++ + +   +  G+
Sbjct: 361 ND-QQIREGLEKAQRLLKQSQKRDYYKILGV 390

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 82.8 bits (205), Expect = 5e-17
 Identities = 26/140 (18%), Positives = 55/140 (39%), Gaps = 16/140 (11%)

Query: 391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLH 450
           +   M + EK    G +L   G+   A +++   +      +P +              +
Sbjct: 19  YFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVD----GDPDNYI-----------AY 63

Query: 451 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510
              A   L +G+ + ++    KV+           +RG   +  G+ +EA+ DF+ ++K 
Sbjct: 64  YRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS 123

Query: 511 DKSSEPDATAALSKLKKQRQ 530
           + S   +   A S+L K  +
Sbjct: 124 NPSE-NEEKEAQSQLIKSDE 142

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 75.1 bits (185), Expect = 2e-14
 Identities = 31/155 (20%), Positives = 54/155 (34%), Gaps = 19/155 (12%)

Query: 383 PKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVF 442
            ++    S     DE +++R      F  G +  A A  +K+L     V   D E     
Sbjct: 128 NEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILE----VCVWDAE----- 178

Query: 443 VGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQR 502
                 L    A C +K GE RK+I            + +  Y+    Y  LG+ E +  
Sbjct: 179 ------LRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLS 232

Query: 503 DFEMMMKVDKSSEPDATAALSKLKKQRQEVESKAR 537
           +    +K+D     D     +  K+ ++  +    
Sbjct: 233 EVRECLKLD----QDHKRCFAHYKQVKKLNKLIES 263

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 58.2 bits (141), Expect = 4e-09
 Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 30/121 (24%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G  L  E  +  + A  EK                          HL +   LL  G+  
Sbjct: 10  GVDLGTENLYFQSMADVEK--------------------------HLELGKKLLAAGQLA 43

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
            ++   +  +D +P +    YRR   ++A+G+ + A  D   ++++      D TAA  +
Sbjct: 44  DALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK----MDFTAARLQ 99

Query: 525 L 525
            
Sbjct: 100 R 100

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157

 Score = 85.2 bits (211), Expect = 1e-19
 Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 12/127 (9%)

Query: 262 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
           D+LG+G L K+ +  G        P+   ++ VH +  L N        TRV      L 
Sbjct: 38  DILGNGLLRKKTLVPGPP--GSSRPVKGQVVTVHLQTSLEN-------GTRVQE-EPELV 87

Query: 322 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAY-DKFLRPANVPEGAHIQWEIELLGF 380
           F+ G+  V +  ++ V LM  GE A+VT    Y Y  +  R   +P  A +  E+ L   
Sbjct: 88  FTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTA 147

Query: 381 -EKPKDW 386
            +     
Sbjct: 148 VDLEHHH 154

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157

 Score = 73.3 bits (180), Expect = 2e-15
 Identities = 28/148 (18%), Positives = 46/148 (31%), Gaps = 12/148 (8%)

Query: 1   MAVEDEDINPQKKKAPSEDDKRRMKIVPGSLMKAVMRPG-GGDSTPSDGDQVAYHCTVRT 59
           +A E       +       ++    +  G L K  + PG  G S P  G  V  H     
Sbjct: 15  LAREFLAAMEPEPAPAPAPEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSL 74

Query: 60  LDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDD 119
            +G  V+            +   LG   ++  L   +P M  GE +M     +  YG   
Sbjct: 75  ENGTRVQEEP--------ELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQG 126

Query: 120 CPVAAPSTFPKDEELHFEIEMIDFAKAK 147
              +     P    L  E+ +      +
Sbjct: 127 ---SRSPYIPPHAALCLEVTLKTAVDLE 151

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157

 Score = 54.0 bits (130), Expect = 8e-09
 Identities = 21/114 (18%), Positives = 37/114 (32%), Gaps = 14/114 (12%)

Query: 149 IADDFGVVKKVINEGQG-WETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEV 207
           I  +  + KK +  G      P     V   +     +G  +          FT G  +V
Sbjct: 39  ILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQE---EPELVFTLGDCDV 95

Query: 208 PKGLEMGIGTMTREEKAVIYVTSQY------LTPSPLMPVVEGCEEVHFEVELV 255
            + L++ +  M   E A++   S+Y             P +     +  EV L 
Sbjct: 96  IQALDLSVPLMDVGETAMVTADSKYCYGPQGSRS----PYIPPHAALCLEVTLK 145

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 78.9 bits (195), Expect = 5e-18
 Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 21/126 (16%)

Query: 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVA 454
           M + EK +  GN LFK+G +  A   Y++++       PQ+            + + N A
Sbjct: 1   MSQFEKQKEQGNSLFKQGLYREAVHCYDQLIT----AQPQN-----------PVGYSNKA 45

Query: 455 ACLLKLGECRKSIEACNKVLDANPAHVKGL------YRRGMAYMALGEFEEAQRDFEMMM 508
             L+KLGE  ++I+ C + L                YR  +A  A+G  +    + + + 
Sbjct: 46  MALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELP 105

Query: 509 KVDKSS 514
           +    S
Sbjct: 106 EGYDRS 111

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 84.7 bits (210), Expect = 1e-17
 Identities = 43/191 (22%), Positives = 82/191 (42%), Gaps = 20/191 (10%)

Query: 395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVA 454
           +  AE+++   N  FK   +E A   Y + +     +NP +            + + N +
Sbjct: 3   LKRAEELKTQANDYFKAKDYENAIKFYSQAIE----LNPSN-----------AIYYGNRS 47

Query: 455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 514
              L+      ++    + ++ +  ++KG YRR  + MALG+F  A RD+E ++KV    
Sbjct: 48  LAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK--- 104

Query: 515 EPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGIENQG-EDQAAGKNENDDS 573
            P    A  K ++  + V+ KA ++     + K   +  + IE+   ED+ +G    D  
Sbjct: 105 -PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGK 163

Query: 574 EQESDGDEAQE 584
              S   E  +
Sbjct: 164 VTISFMKELMQ 174

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134

 Score = 77.7 bits (192), Expect = 3e-17
 Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 7/119 (5%)

Query: 262 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
           D+ GD  ++K  IR+G G+        D+ + V Y G L + ++   +D+       P  
Sbjct: 21  DISGDRGVLKDVIREGAGDLVAP----DASVLVKYSGYLEHMDRP--FDSNYF-RKTPRL 73

Query: 322 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 380
              GE +   G E+ +  M  GE+A     P+YAY     P  +P    + +EIELL F
Sbjct: 74  MKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLFEIELLDF 132

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134

 Score = 69.2 bits (170), Expect = 3e-14
 Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 12/138 (8%)

Query: 9   NPQKKKAPSEDDKRRMKIV--PGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLD-GVIV 65
           +    ++  E   +RM  +     ++K V+R G GD   +    V    +          
Sbjct: 4   DDAPGQSLYERLSQRMLDISGDRGVLKDVIREGAGD-LVAPDASVLVKYSGYLEHMDRPF 62

Query: 66  ESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAP 125
           +S       +  P    LG+   L G+  G+ +M +GE++ F  KP   YG   C    P
Sbjct: 63  DSNYF----RKTPRLMKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGC----P 114

Query: 126 STFPKDEELHFEIEMIDF 143
              P +  + FEIE++DF
Sbjct: 115 PLIPPNTTVLFEIELLDF 132

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 8/117 (6%)

Query: 144 AKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGD-GKLILSHRE-GEPYFFT 201
            +   I+ D GV+K VI EG G +       V    S       +   S+     P    
Sbjct: 17  QRMLDISGDRGVLKDVIREGAG-DLVAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMK 75

Query: 202 FGKSEVPKGLEMGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEGCEEVHFEVELV 255
            G+     G+E+G+ +M R E A       Y       P  P++     V FE+EL+
Sbjct: 76  LGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGCP--PLIPPNTTVLFEIELL 130

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 79.1 bits (196), Expect = 1e-16
 Identities = 28/138 (20%), Positives = 58/138 (42%), Gaps = 18/138 (13%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           ++AE+ R+ G   F +  +  A   Y ++++      P+D              + N AA
Sbjct: 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIK----RAPEDAR-----------GYSNRAA 181

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
            L KL    ++I  CNK ++ +P  V+   R+  A +A+ E+  A    +     D    
Sbjct: 182 ALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEV- 240

Query: 516 PDATA--ALSKLKKQRQE 531
            + ++   + +L  +  +
Sbjct: 241 NNGSSAREIDQLYYKASQ 258

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 67.2 bits (165), Expect = 1e-12
 Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 18/109 (16%)

Query: 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC 456
           + EK    GN+ +K  +F+ A   Y K       ++                   N AA 
Sbjct: 6   DKEKAE--GNKFYKARQFDEAIEHYNKAWE----LHKDIT------------YLNNRAAA 47

Query: 457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
             + GE   +I   N  ++              ++  +G       D +
Sbjct: 48  EYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLK 96

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 60.6 bits (148), Expect = 2e-10
 Identities = 21/102 (20%), Positives = 31/102 (30%), Gaps = 15/102 (14%)

Query: 404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC 463
           T + L K    E    K E        VNP+  EE                       + 
Sbjct: 111 TADILTKLRNAEKELKKAEAEAY----VNPEKAEE-----------ARLEGKEYFTKSDW 155

Query: 464 RKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
             +++A  +++   P   +G   R  A   L  F EA  D  
Sbjct: 156 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 197

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 57.9 bits (141), Expect = 2e-09
 Identities = 9/101 (8%), Positives = 30/101 (29%), Gaps = 16/101 (15%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
               +++G++E A +     +        +   +           +  ++    ++G   
Sbjct: 45  AAAEYEKGEYETAISTLNDAVE----QGREMRAD-----------YKVISKSFARIGNAY 89

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
             +    K ++     +   +R       L   E+  +  E
Sbjct: 90  HKLGDLKKTIEYYQKSLT-EHRTADILTKLRNAEKELKKAE 129

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 55.3 bits (134), Expect = 1e-08
 Identities = 21/130 (16%), Positives = 35/130 (26%), Gaps = 27/130 (20%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
                + G         +K +        +   E               A  L KL    
Sbjct: 79  SKSFARIGNAYHKLGDLKKTIEY----YQKSLTE------------HRTADILTKLRNAE 122

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPD-ATA--- 520
           K ++        NP   +     G  Y    ++  A + +  M+K      P+ A     
Sbjct: 123 KELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA----PEDARGYSN 178

Query: 521 ---ALSKLKK 527
              AL+KL  
Sbjct: 179 RAAALAKLMS 188

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 82.1 bits (203), Expect = 2e-16
 Identities = 34/192 (17%), Positives = 60/192 (31%), Gaps = 25/192 (13%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           GN  F    F  A   Y+  +     ++P +              + N++AC +  G+  
Sbjct: 32  GNHFFTAKNFNEAIKYYQYAIE----LDPNEPV-----------FYSNISACYISTGDLE 76

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
           K IE   K L+  P H K L RR  A  +LG F +A  D  ++              L +
Sbjct: 77  KVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLER 136

Query: 525 LKK----QRQEVESKARKQFKGLFDKKPGEISEVGIENQGEDQAAGKNENDDSEQESDGD 580
                  +         +            ++       G   +  +  + +    S+ D
Sbjct: 137 NLNKQAMKVLNENLSKDEGRGSQVLPSNTSLA----SFFGIFDSHLEVSSVN--TSSNYD 190

Query: 581 EAQEFHEAAAEA 592
            A      A + 
Sbjct: 191 TAYALLSDALQR 202

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 65.9 bits (161), Expect = 2e-11
 Identities = 18/101 (17%), Positives = 39/101 (38%), Gaps = 16/101 (15%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G   F +     A+   ++ +     ++P  +             ++ +A  L      +
Sbjct: 250 GIFHFLKNNLLDAQVLLQESIN----LHPTPN------------SYIFLALTLADKENSQ 293

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           +  +   K +D NP +    Y RG  Y  L +++ A+ DF+
Sbjct: 294 EFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 63.6 bits (155), Expect = 8e-11
 Identities = 18/138 (13%), Positives = 46/138 (33%), Gaps = 12/138 (8%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE----EGKVFVGKRNL-LHLNVAACLLK 459
              L   G F+ A  +Y+   R    +    ++     G +      L    +     L 
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKR----LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLD 440

Query: 460 LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDAT 519
             +   +I+   K  + +P   +         + + + +EA   FE    + + +  +  
Sbjct: 441 EEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR-TMDEKL 499

Query: 520 AALS--KLKKQRQEVESK 535
            A +  +  K ++ + + 
Sbjct: 500 QATTFAEAAKIQKRLRAD 517

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 60.9 bits (148), Expect = 7e-10
 Identities = 19/149 (12%), Positives = 48/149 (32%), Gaps = 19/149 (12%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G   F    ++ AK  ++K       +NP++              ++ +A  L K G+  
Sbjct: 317 GQMYFILQDYKNAKEDFQKAQS----LNPENVY-----------PYIQLACLLYKQGKFT 361

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
           +S    N+     P   +            G+F+ A + +++  +++             
Sbjct: 362 ESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE----EVQEKIHVG 417

Query: 525 LKKQRQEVESKARKQFKGLFDKKPGEISE 553
           +     +    AR+  +        + + 
Sbjct: 418 IGPLIGKATILARQSSQDPTQLDEEKFNA 446

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 58.6 bits (142), Expect = 3e-09
 Identities = 14/101 (13%), Positives = 31/101 (30%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
              L  +   +     ++K +     +NP+               + +       L + +
Sbjct: 283 ALTLADKENSQEFFKFFQKAVD----LNPEYPP-----------TYYHRGQMYFILQDYK 327

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            + E   K    NP +V    +        G+F E++  F 
Sbjct: 328 NAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFN 368

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 22/185 (11%), Positives = 53/185 (28%), Gaps = 19/185 (10%)

Query: 412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN 471
           G     +    ++      ++P   +          +   N            ++I+   
Sbjct: 1   GSHMNGEPDIAQLKG----LSPSQRQA-------YAVQLKNRGNHFFTAKNFNEAIKYYQ 49

Query: 472 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK----LKK 527
             ++ +P            Y++ G+ E+        +++     PD + AL +     + 
Sbjct: 50  YAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK----PDHSKALLRRASANES 105

Query: 528 QRQEVESKARKQFKGLFDKKPGEISEVGIENQGEDQAAGKNENDDSEQESDGDEAQEFHE 587
                ++        L     G   E  +E     QA      + S+ E  G +    + 
Sbjct: 106 LGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT 165

Query: 588 AAAEA 592
           + A  
Sbjct: 166 SLASF 170

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 11/128 (8%), Positives = 28/128 (21%), Gaps = 23/128 (17%)

Query: 406 NRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRK 465
           + +     ++ A A     L+       +        + K                    
Sbjct: 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTK-------------STDMYHS 227

Query: 466 SIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATA----- 520
            + A              L   G+ +       +AQ   +  + +     P   +     
Sbjct: 228 LLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH----PTPNSYIFLA 283

Query: 521 -ALSKLKK 527
             L+  + 
Sbjct: 284 LTLADKEN 291

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135

 Score = 75.0 bits (185), Expect = 2e-16
 Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 8/131 (6%)

Query: 265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSS 324
            DG ++K   ++G+G      P   + + VHY G L N     F D+  D  G    F+ 
Sbjct: 12  KDGGVLKLIKKEGQGV---VKPTTGTTVKVHYVGTLEN--GTKF-DSSRDR-GDQFSFNL 64

Query: 325 GEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPK 384
           G G V +G+++ V  M  GE+A  T   DY Y     P  +P GA + +E+EL  +   +
Sbjct: 65  GRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEW-SAE 123

Query: 385 DWTGLSFDGIM 395
           D +      I+
Sbjct: 124 DISPDRDGTIL 134

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135

 Score = 70.8 bits (174), Expect = 8e-15
 Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 8/131 (6%)

Query: 28  PGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSK 87
            G ++K + + G G   P+ G  V  H      +G   +S+R     +G      LG+  
Sbjct: 13  DGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRD----RGDQFSFNLGRGN 68

Query: 88  ILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAK 147
           ++ G   G+ TM KGEV+ F ++    YG+      +P   P    L FE+E+ +++   
Sbjct: 69  VIKGWDLGVATMTKGEVAEFTIRSDYGYGDA----GSPPKIPGGATLIFEVELFEWSAED 124

Query: 148 IIADDFGVVKK 158
           I  D  G + +
Sbjct: 125 ISPDRDGTILR 135

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135

 Score = 56.5 bits (137), Expect = 7e-10
 Identities = 40/126 (31%), Positives = 58/126 (46%), Gaps = 9/126 (7%)

Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKG 210
           D GV+K +  EGQG   P     VK        +G    S R+ G+ + F  G+  V KG
Sbjct: 13  DGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKG 72

Query: 211 LEMGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEGCEEVHFEVELVHLIQVRDMLG-- 265
            ++G+ TMT+ E A   + S Y      SP  P + G   + FEVEL       D+    
Sbjct: 73  WDLGVATMTKGEVAEFTIRSDYGYGDAGSP--PKIPGGATLIFEVELFE-WSAEDISPDR 129

Query: 266 DGRLIK 271
           DG +++
Sbjct: 130 DGTILR 135

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128

 Score = 74.6 bits (184), Expect = 3e-16
 Identities = 42/118 (35%), Positives = 60/118 (50%), Gaps = 7/118 (5%)

Query: 265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSS 324
            D  ++K   R G GE   + P+    + VHYKG L N   K F D+  D   +P  FS 
Sbjct: 17  KDRGVLKIVKRVGNGE---ETPMIGDKVYVHYKGKLSN--GKKF-DSSHD-RNEPFVFSL 69

Query: 325 GEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEK 382
           G+G V + +++ V  M  GEI  + C P+YAY        +P  A + +EIELL F+ 
Sbjct: 70  GKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKG 127

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128

 Score = 70.7 bits (174), Expect = 6e-15
 Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 8/134 (5%)

Query: 12  KKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSE 71
                +E  +         ++K V R G G+ TP  GD+V  H   +  +G   +S+   
Sbjct: 2   APATVTEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHD- 60

Query: 72  YGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKD 131
              +  P    LGK +++     G+ TM KGE+     KP+  YG       +    P +
Sbjct: 61  ---RNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSA----GSLPKIPSN 113

Query: 132 EELHFEIEMIDFAK 145
             L FEIE++DF  
Sbjct: 114 ATLFFEIELLDFKG 127

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 6/116 (5%)

Query: 144 AKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTF 202
            +      D GV+K V   G G ETP    +V      K  +GK   S  +  EP+ F+ 
Sbjct: 10  GEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSL 69

Query: 203 GKSEVPKGLEMGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEGCEEVHFEVELV 255
           GK +V K  ++G+ TM + E   +    +Y      S   P +     + FE+EL+
Sbjct: 70  GKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSL--PKIPSNATLFFEIELL 123

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180

 Score = 75.7 bits (186), Expect = 4e-16
 Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 13/140 (9%)

Query: 265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSS 324
            D ++ K+ I++G G  P       S   +HY+    N + K  ++       QP+E   
Sbjct: 47  LDEKVSKQIIKEGHGSKPSK----YSTCFLHYRAWTKNSQHK--FEDTWHE-QQPIELVL 99

Query: 325 G-EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDK--FLRPANVPEGAHIQWEIELLGFE 381
           G E     G  + V  M  GE ALV    + AY K       NVP  A + +E+E++GF+
Sbjct: 100 GKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFD 159

Query: 382 KPKDWTGLSFDGIMDEAEKI 401
           + K+         M   E+I
Sbjct: 160 ETKE---GKARSDMTVEERI 176

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180

 Score = 68.7 bits (168), Expect = 1e-13
 Identities = 33/141 (23%), Positives = 59/141 (41%), Gaps = 9/141 (6%)

Query: 9   NPQKKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIV-ES 67
            P ++           +++   + K +++ G G   PS       H    T +     E 
Sbjct: 29  EPSQEGNVPPKVDSEAEVLDEKVSKQIIKEGHGS-KPSKYSTCFLHYRAWTKNSQHKFED 87

Query: 68  TRSEYGGKGIPIRHVLGKSKILL-GLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPS 126
           T      +  PI  VLGK K  L GL  G+ +M  GE ++  +  ++ YG++     +  
Sbjct: 88  TWH----EQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNF--SFP 141

Query: 127 TFPKDEELHFEIEMIDFAKAK 147
             P   +L +E+E+I F + K
Sbjct: 142 NVPPMADLLYEVEVIGFDETK 162

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180

 Score = 49.8 bits (119), Expect = 4e-07
 Identities = 30/162 (18%), Positives = 65/162 (40%), Gaps = 9/162 (5%)

Query: 107 FKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGW 166
            + + Q H  E +      +    +      +     ++A+++  D  V K++I EG G 
Sbjct: 5   LEHQTQTHDQESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVL--DEKVSKQIIKEGHG- 61

Query: 167 ETPRAPYEVKAWISAKTGDGKLIL--SHREGEPYFFTFGKS-EVPKGLEMGIGTMTREEK 223
             P           A T + +     +  E +P     GK  +   GL +G+ +M   E+
Sbjct: 62  SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGER 121

Query: 224 AVIYVTSQY---LTPSPLMPVVEGCEEVHFEVELVHLIQVRD 262
           A+++V  +       +   P V    ++ +EVE++   + ++
Sbjct: 122 ALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKE 163

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 79.8 bits (197), Expect = 6e-16
 Identities = 30/145 (20%), Positives = 53/145 (36%), Gaps = 17/145 (11%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           GN+ F+  K++ A   Y   L     +                  + N++AC + +G+ +
Sbjct: 13  GNQFFRNKKYDDAIKYYNWALE----LKEDPV------------FYSNLSACYVSVGDLK 56

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
           K +E   K L+  P + K L RR  A   LG+F +A  D  ++      ++      L +
Sbjct: 57  KVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLER 116

Query: 525 -LKKQRQEVESKARKQFKGLFDKKP 548
            L KQ      +             
Sbjct: 117 NLNKQAMSKLKEKFGDIDTATATPT 141

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 67.5 bits (165), Expect = 5e-12
 Identities = 15/109 (13%), Positives = 37/109 (33%), Gaps = 18/109 (16%)

Query: 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC 456
            + +    G   F +     A    +K +     + P+ +             ++ +A  
Sbjct: 238 ISLEHT--GIFKFLKNDPLGAHEDIKKAIE----LFPRVN------------SYIYMALI 279

Query: 457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           +    +  +     +K L  +  +    Y RG     L  +++A +DF+
Sbjct: 280 MADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFD 328

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 17/141 (12%), Positives = 46/141 (32%), Gaps = 27/141 (19%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK----- 459
              L  +  F+ A  +Y+  +     +  + D            +++ +A  + K     
Sbjct: 379 AEILTDKNDFDKALKQYDLAIE----LENKLDG-----------IYVGIAPLVGKATLLT 423

Query: 460 ----LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
               +    ++     K    +P   +         +   + +EA   FE    + + + 
Sbjct: 424 RNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR-TM 482

Query: 516 PDATAALS--KLKKQRQEVES 534
            +   A++  +  K +Q + S
Sbjct: 483 EEKLQAITFAEAAKVQQRIRS 503

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 64.0 bits (156), Expect = 7e-11
 Identities = 11/142 (7%), Positives = 41/142 (28%), Gaps = 19/142 (13%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G   F    ++ A   ++K       ++P++              ++ +A    +  +  
Sbjct: 311 GQMNFILQNYDQAGKDFDKAKE----LDPENIFP-----------YIQLACLAYRENKFD 355

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
                 ++     P   +             +F++A + +++ ++++             
Sbjct: 356 DCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE----NKLDGIYVG 411

Query: 525 LKKQRQEVESKARKQFKGLFDK 546
           +     +     R      F +
Sbjct: 412 IAPLVGKATLLTRNPTVENFIE 433

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 59.0 bits (143), Expect = 2e-09
 Identities = 7/107 (6%), Positives = 31/107 (28%), Gaps = 15/107 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
              +            ++K L+    ++  +             ++ +       L    
Sbjct: 277 ALIMADRNDSTEYYNYFDKALK----LDSNNSS-----------VYYHRGQMNFILQNYD 321

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511
           ++ +  +K  + +P ++    +         +F++ +  F    +  
Sbjct: 322 QAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF 368

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 15/102 (14%), Positives = 34/102 (33%), Gaps = 2/102 (1%)

Query: 410 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEA 469
               ++ A   + K  R F     +++E+ K+   K  +   +         +   + E 
Sbjct: 201 SPESYDKADESFTKAARLFEEQLDKNNEDEKLK-EKLAISLEHTGIFKFLKNDPLGAHED 259

Query: 470 CNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511
             K ++  P  V       +      +  E    F+  +K+D
Sbjct: 260 IKKAIELFP-RVNSYIYMALIMADRNDSTEYYNYFDKALKLD 300

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 16/141 (11%), Positives = 33/141 (23%), Gaps = 14/141 (9%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
               F   K EL  A Y++       +        K              +         
Sbjct: 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPES---YDKADESFTKAARLFE 220

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATA---- 520
           + ++  N+           L   G+      +   A  D +  +++     P   +    
Sbjct: 221 EQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF----PRVNSYIYM 276

Query: 521 ALSKLKKQRQEVESKARKQFK 541
           AL    +       +    F 
Sbjct: 277 ALIMADRNDST---EYYNYFD 294

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 6/56 (10%), Positives = 18/56 (32%), Gaps = 1/56 (1%)

Query: 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
             +      +  +   +I+  N  L+     V         Y+++G+ ++      
Sbjct: 9   LKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMST 63

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129

 Score = 73.1 bits (180), Expect = 1e-15
 Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 4/123 (3%)

Query: 262 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
           ++  DG +IK  ++ G      + P   + + VHY G L +  K   +D+  D    P +
Sbjct: 11  ELTADGGVIKTILKKGDEG-EENIPKKGNEVTVHYVGKLESTGKV--FDSSFD-RNVPFK 66

Query: 322 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           F   +G V +G+++CV  M   E  LV     Y Y       ++P  + + +EIELL F 
Sbjct: 67  FHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSFR 126

Query: 382 KPK 384
           + +
Sbjct: 127 ELE 129

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129

 Score = 61.2 bits (149), Expect = 1e-11
 Identities = 24/123 (19%), Positives = 56/123 (45%), Gaps = 11/123 (8%)

Query: 28  PGSLMKAVMRPGGGDS--TPSDGDQVAYHCTVRTLD-GVIVESTRSEYGGKGIPIRHVLG 84
            G ++K +++ G       P  G++V  H   +    G + +S+      + +P +  L 
Sbjct: 15  DGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSF----DRNVPFKFHLE 70

Query: 85  KSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA 144
           + +++ G    + +M K E  + +++    YG++        + P +  L FEIE++ F 
Sbjct: 71  QGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDE----GCGESIPGNSVLLFEIELLSFR 126

Query: 145 KAK 147
           + +
Sbjct: 127 ELE 129

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129

 Score = 48.4 bits (116), Expect = 4e-07
 Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 29/119 (24%)

Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGD-------GKLIL-------SHREGEPYF 199
           GV+K ++ +G   E              K G+       GKL         S     P+ 
Sbjct: 17  GVIKTILKKGDEGEEN----------IPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFK 66

Query: 200 FTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEGCEEVHFEVELV 255
           F   + EV KG ++ + +M + EK ++ + S Y            + G   + FE+EL+
Sbjct: 67  FHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCG--ESIPGNSVLLFEIELL 123

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107

 Score = 71.8 bits (177), Expect = 1e-15
 Identities = 37/113 (32%), Positives = 51/113 (45%), Gaps = 7/113 (6%)

Query: 269 LIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL 328
           +    I  G G      P       VHY GML +   K F D+  D   +P +F  G+  
Sbjct: 2   VQVETISPGDGR---TFPKRGQTCVVHYTGMLED--GKKF-DSSRDR-NKPFKFMLGKQE 54

Query: 329 VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           V  G+E  V  M  G+ A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 55  VIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107

 Score = 66.8 bits (164), Expect = 8e-14
 Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 8/113 (7%)

Query: 31  LMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILL 90
           +    + PG G + P  G     H T    DG   +S+R     +  P + +LGK +++ 
Sbjct: 2   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRD----RNKPFKFMLGKQEVIR 57

Query: 91  GLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143
           G  EG+  M  G+ +   + P   YG        P   P    L F++E++  
Sbjct: 58  GWEEGVAQMSVGQRAKLTISPDYAYGAT----GHPGIIPPHATLVFDVELLKL 106

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107

 Score = 51.0 bits (123), Expect = 3e-08
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 6/106 (5%)

Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLE 212
           GV  + I+ G G   P+         +    DGK   S R+  +P+ F  GK EV +G E
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60

Query: 213 MGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEGCEEVHFEVELV 255
            G+  M+  ++A + ++  Y    T  P   ++     + F+VEL+
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGATGHP--GIIPPHATLVFDVELL 104

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119

 Score = 71.6 bits (176), Expect = 3e-15
 Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 7/121 (5%)

Query: 265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEK---KVFYDTRVDNDGQPLE 321
           G  +  K  ++ G      + P    ++   Y G L +       +   ++   + +PL 
Sbjct: 2   GPPKYTKSILKKGDKT---NFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLS 58

Query: 322 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANV-PEGAHIQWEIELLGF 380
           F  G G V  G++  +  M  GE A +   P++AY K  +P    P    + +E+EL+  
Sbjct: 59  FKVGVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDI 118

Query: 381 E 381
           +
Sbjct: 119 D 119

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119

 Score = 67.7 bits (166), Expect = 5e-14
 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 6/119 (5%)

Query: 28  PGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVES---TRSEYGGKGIPIRHVLG 84
           P    K++++ G   + P  GD V    T    DG + ++   T S+      P+   +G
Sbjct: 3   PPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVG 62

Query: 85  KSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143
             K++ G  E + TM KGE +  +++P+  YG+   P A     P + +L FE+E++D 
Sbjct: 63  VGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDA---KIPPNTKLIFEVELVDI 118

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119

 Score = 53.5 bits (129), Expect = 6e-09
 Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 16/115 (13%)

Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGK--------LILSHREGEPYFFTFGKS 205
              K ++ +G     P+    V  W +    DG              +  +P  F  G  
Sbjct: 5   KYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVG 64

Query: 206 EVPKGLEMGIGTMTREEKAVIYVTSQYL-----TPSPLMPVVEGCEEVHFEVELV 255
           +V +G +  + TM++ EKA + +  ++       P   +P      ++ FEVELV
Sbjct: 65  KVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIP---PNTKLIFEVELV 116

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144

 Score = 72.0 bits (177), Expect = 3e-15
 Identities = 42/118 (35%), Positives = 60/118 (50%), Gaps = 7/118 (5%)

Query: 265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSS 324
            D  ++K   R G GE   + P+    + VHYKG L N   K F D+  D   +P  FS 
Sbjct: 33  KDRGVLKIVKRVGNGE---ETPMIGDKVYVHYKGKLSN--GKKF-DSSHDR-NEPFVFSL 85

Query: 325 GEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEK 382
           G+G V + +++ V  M  GEI  + C P+YAY        +P  A + +EIELL F+ 
Sbjct: 86  GKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKG 143

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144

 Score = 68.5 bits (168), Expect = 6e-14
 Identities = 38/146 (26%), Positives = 60/146 (41%), Gaps = 9/146 (6%)

Query: 1   MAVEDEDINPQKKKAPSEDDKRRMKIV-PGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRT 59
              E    N +   A   +    +       ++K V R G G+ TP  GD+V  H   + 
Sbjct: 6   TTDEGAKNNEESPTATVAEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKL 65

Query: 60  LDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDD 119
            +G   +S+      +  P    LGK +++     G+ TM KGE+     KP+  YG   
Sbjct: 66  SNGKKFDSSHD----RNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAG 121

Query: 120 CPVAAPSTFPKDEELHFEIEMIDFAK 145
               +    P +  L FEIE++DF  
Sbjct: 122 ----SLPKIPSNATLFFEIELLDFKG 143

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144

 Score = 53.9 bits (130), Expect = 7e-09
 Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 6/116 (5%)

Query: 144 AKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTF 202
            +      D GV+K V   G G ETP    +V      K  +GK   S  +  EP+ F+ 
Sbjct: 26  GEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSL 85

Query: 203 GKSEVPKGLEMGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEGCEEVHFEVELV 255
           GK +V K  ++G+ TM + E   +    +Y      S   P +     + FE+EL+
Sbjct: 86  GKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSL--PKIPSNATLFFEIELL 139

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102

 Score = 70.7 bits (174), Expect = 4e-15
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 4/92 (4%)

Query: 294 VHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPD 353
           +HY G L +     F D+ +    QP  FS G G V +G++  +  M  GE   +  P +
Sbjct: 14  MHYTGKLED--GTEF-DSSLPQ-NQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSE 69

Query: 354 YAYDKFLRPANVPEGAHIQWEIELLGFEKPKD 385
             Y +   P  +P GA + +E+ELL  E+  +
Sbjct: 70  LGYGERGAPPKIPGGATLVFEVELLKIERRTE 101

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102

 Score = 52.9 bits (128), Expect = 5e-09
 Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 9/109 (8%)

Query: 39  GGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPT 98
           G        GD +  H T +  DG   +S+      +  P    LG  +++ G  +G+  
Sbjct: 1   GSPI-KSRKGDVLHMHYTGKLEDGTEFDSSLP----QNQPFVFSLGTGQVIKGWDQGLLG 55

Query: 99  MLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAK 147
           M +GE     +  ++ YGE      AP   P    L FE+E++   +  
Sbjct: 56  MCEGEKRKLVIPSELGYGER----GAPPKIPGGATLVFEVELLKIERRT 100

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102

 Score = 39.1 bits (92), Expect = 4e-04
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 5/76 (6%)

Query: 191 SHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEGCEE 247
           S  + +P+ F+ G  +V KG + G+  M   EK  + + S+       +P  P + G   
Sbjct: 29  SLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAP--PKIPGGAT 86

Query: 248 VHFEVELVHLIQVRDM 263
           + FEVEL+ + +  ++
Sbjct: 87  LVFEVELLKIERRTEL 102

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 71.7 bits (176), Expect = 4e-15
 Identities = 19/142 (13%), Positives = 51/142 (35%), Gaps = 21/142 (14%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           D  E++   G   ++ GK++ A+  ++ +      ++  D               L + A
Sbjct: 16  DTLEQLYALGFNQYQAGKWDDAQKIFQALCM----LDHYDAR-----------YFLGLGA 60

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
           C   LG   +++++ +     +    +  +     ++ LG+ + A+  F     +  +  
Sbjct: 61  CRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP 120

Query: 516 PD------ATAALSKLKKQRQE 531
                   A A L  +  ++  
Sbjct: 121 AHEALAARAGAMLEAVTARKDR 142

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 8/40 (20%), Positives = 20/40 (50%)

Query: 472 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511
            +   +   ++ LY  G      G++++AQ+ F+ +  +D
Sbjct: 9   MLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD 48

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 70.6 bits (173), Expect = 1e-14
 Identities = 14/133 (10%), Positives = 44/133 (33%), Gaps = 17/133 (12%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           D  + I       + +G+ E A+  +  +       +  + +             + +AA
Sbjct: 34  DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI----YDFYNVD-----------YIMGLAA 78

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
                 + +++ +               ++  G   + L    +A+  FE++++     +
Sbjct: 79  IYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138

Query: 516 --PDATAALSKLK 526
               A + L  ++
Sbjct: 139 LKIKAQSYLDAIQ 151

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113

 Score = 68.8 bits (169), Expect = 2e-14
 Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 7/114 (6%)

Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           +G +   RI  G G      P    L+ +HY G L N   + F D+ VD  G P + + G
Sbjct: 5   EGNVKIDRISPGDGA---TFPKTGDLVTIHYTGTLEN--GQKF-DSSVDR-GSPFQCNIG 57

Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLG 379
            G V +G+++ +  +  GE A +T P  YAY     P  +P  + + +++ELL 
Sbjct: 58  VGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELLK 111

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113

 Score = 65.3 bits (160), Expect = 3e-13
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 8/118 (6%)

Query: 25  KIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLG 84
           +++ G++    + PG G + P  GD V  H T    +G   +S+      +G P +  +G
Sbjct: 2   EVIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVD----RGSPFQCNIG 57

Query: 85  KSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMID 142
             +++ G   GIP +  GE +   +     YG        P   P +  L F++E++ 
Sbjct: 58  VGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPR----GFPGLIPPNSTLVFDVELLK 111

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113

 Score = 51.0 bits (123), Expect = 3e-08
 Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 6/106 (5%)

Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLE 212
            V    I+ G G   P+    V    +    +G+   S  + G P+    G  +V KG +
Sbjct: 7   NVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWD 66

Query: 213 MGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEGCEEVHFEVELV 255
           +GI  ++  EKA + +   Y       P   ++     + F+VEL+
Sbjct: 67  VGIPKLSVGEKARLTIPGPYAYGPRGFP--GLIPPNSTLVFDVELL 110

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 69.0 bits (169), Expect = 1e-13
 Identities = 19/138 (13%), Positives = 46/138 (33%), Gaps = 2/138 (1%)

Query: 405 GNRLFKEGKFELAKAKYEKVLR-DFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC 463
            +   + G+   A + + + +  + +                 + L   +A    K    
Sbjct: 11  VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNY 70

Query: 464 RKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS 523
            K+     ++L   P +V  L       +  G+ ++A R +E +++++  +   A   L 
Sbjct: 71  DKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN-LAANIFLG 129

Query: 524 KLKKQRQEVESKARKQFK 541
                  E E K  +   
Sbjct: 130 NYYYLTAEQEKKKLETDY 147

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 67.5 bits (165), Expect = 5e-13
 Identities = 23/130 (17%), Positives = 48/130 (36%), Gaps = 18/130 (13%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE-C 463
                  G+ + A   YEK+L+    +   +              ++ +        E  
Sbjct: 95  AEMQVCRGQEKDALRMYEKILQ----LEADNLA-----------ANIFLGNYYYLTAEQE 139

Query: 464 RKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS 523
           +K +E   K L +        YR G++ +    +E+A+   + ++    S+E  A   L 
Sbjct: 140 KKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE--AQKTLD 197

Query: 524 KLKKQRQEVE 533
           K+ +  +EV 
Sbjct: 198 KILRIEKEVN 207

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130

 Score = 66.5 bits (163), Expect = 2e-13
 Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 7/114 (6%)

Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
             +L K+ +  G G      P     + VHY G   +   K F D+     G+P +F+ G
Sbjct: 23  SAQLEKKVLTPGDGV---TKPQAGKKVTVHYDGRFPD--GKQF-DSSRSR-GKPFQFTLG 75

Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLG 379
            G V +G++  V  M  GE AL T P   AY +   P  +P  A + +E+ELL 
Sbjct: 76  AGEVIKGWDQGVATMTLGEKALFTIPYQLAYGERGYPPVIPPKATLVFEVELLA 129

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130

 Score = 65.7 bits (161), Expect = 4e-13
 Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 8/134 (5%)

Query: 9   NPQKKKAPSEDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVEST 68
           +        E   +    +   L K V+ PG G + P  G +V  H   R  DG   +S+
Sbjct: 4   HHHHHMGTLEAQTQGPGSMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSS 63

Query: 69  RSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTF 128
           RS    +G P +  LG  +++ G  +G+ TM  GE ++F +  Q+ YGE       P   
Sbjct: 64  RS----RGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFTIPYQLAYGER----GYPPVI 115

Query: 129 PKDEELHFEIEMID 142
           P    L FE+E++ 
Sbjct: 116 PPKATLVFEVELLA 129

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130

 Score = 51.5 bits (124), Expect = 4e-08
 Identities = 39/128 (30%), Positives = 57/128 (44%), Gaps = 6/128 (4%)

Query: 132 EELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILS 191
              H  +  ++       +    + KKV+  G G   P+A  +V      +  DGK   S
Sbjct: 3   HHHHHHMGTLEAQTQGPGSMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDS 62

Query: 192 HRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEGCEE 247
            R  G+P+ FT G  EV KG + G+ TMT  EKA+  +  Q        P  PV+     
Sbjct: 63  SRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFTIPYQLAYGERGYP--PVIPPKAT 120

Query: 248 VHFEVELV 255
           + FEVEL+
Sbjct: 121 LVFEVELL 128

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Length = 125

 Score = 65.0 bits (159), Expect = 6e-13
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 294 VHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPD 353
           VHY+G L  +    F+ T   N+GQP+ F+ G     +G++  ++ M  GE   +  PP 
Sbjct: 37  VHYEGYLEKDGSL-FHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKRKLIIPPA 95

Query: 354 YAYDKFLRPANVPEGAHIQWEIELLGFEKP 383
             Y K      +P  + + + I+LL     
Sbjct: 96  LGYGK-EGKGKIPPESTLIFNIDLLEIRNG 124

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Length = 125

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 8/111 (7%)

Query: 37  RPGGGDSTPSDGDQVAYHCTVR-TLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEG 95
           +P         GD +  H       DG +  ST     G+  PI   LG  + L G  +G
Sbjct: 21  KPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQ--PIWFTLGILEALKGWDQG 78

Query: 96  IPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKA 146
           +  M  GE     + P + YG+           P +  L F I++++    
Sbjct: 79  LKGMCVGEKRKLIIPPALGYGK-----EGKGKIPPESTLIFNIDLLEIRNG 124

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 62.6 bits (152), Expect = 6e-12
 Identities = 17/144 (11%), Positives = 50/144 (34%), Gaps = 16/144 (11%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           D  E++       ++ G +E A   ++ +      ++  D               L + A
Sbjct: 19  DTLEQLYSLAFNQYQSGXYEDAHXVFQALCV----LDHYDSR-----------FFLGLGA 63

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
           C   +G+   +I + +     +    +  +      +  GE  EA+    +  ++   + 
Sbjct: 64  CRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA-NX 122

Query: 516 PDATAALSKLKKQRQEVESKARKQ 539
           P+     +++    + ++ K   +
Sbjct: 123 PEFXELSTRVSSMLEAIKLKKEMK 146

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 63.8 bits (156), Expect = 2e-11
 Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G  L K+G+  LA  +Y+  +      +    +           ++  + +     G   
Sbjct: 81  GKILMKKGQDSLAIQQYQAAVD----RDTTRLD-----------MYGQIGSYFYNKGNFP 125

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            +I+   K +       K  Y  G AY    E+ +A   F 
Sbjct: 126 LAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFV 166

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 55.7 bits (135), Expect = 9e-09
 Identities = 21/104 (20%), Positives = 34/104 (32%), Gaps = 18/104 (17%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G+  + +G F LA    EK +R        D +           +   +        E  
Sbjct: 115 GSYFYNKGNFPLAIQYMEKQIR----PTTTDPK-----------VFYELGQAYYYNKEYV 159

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALG---EFEEAQRDFE 505
           K+  +  KVL+  P    G   R  A  A     +   A+  +E
Sbjct: 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYE 203

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 55.7 bits (135), Expect = 1e-08
 Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 6/84 (7%)

Query: 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509
               A  L K     ++IE  NK+            RR + Y  L +++ AQ+D E    
Sbjct: 6   EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS 65

Query: 510 VDKSSEPDATA------ALSKLKK 527
              +++  +         L K  +
Sbjct: 66  KVNATKAKSADFEYYGKILMKKGQ 89

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 14/104 (13%), Positives = 30/104 (28%), Gaps = 18/104 (17%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
            + LFK   +  A   + K+                        ++   A C  +L +  
Sbjct: 10  ADFLFKNNNYAEAIEVFNKLEA----KKYNSPY-----------IYNRRAVCYYELAKYD 54

Query: 465 KSIEACN---KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            + +        ++A  A        G   M  G+   A + ++
Sbjct: 55  LAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQ 98

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 46.9 bits (112), Expect = 8e-06
 Identities = 16/141 (11%), Positives = 37/141 (26%), Gaps = 34/141 (24%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G   +   ++  A + + KVL     + P                +L  A          
Sbjct: 149 GQAYYYNKEYVKADSSFVKVLE----LKPNIYI-----------GYLWRARANAAQDPDT 193

Query: 465 K---SIEACNKVL--------DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513
           K   +     K++              ++        Y    +  +A   ++ ++ +D  
Sbjct: 194 KQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD-- 251

Query: 514 SEPDATAALSK----LKKQRQ 530
             P    A+      L+    
Sbjct: 252 --PTNKKAIDGLKMKLEHHHH 270

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133

 Score = 59.9 bits (146), Expect = 4e-11
 Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 269 LIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL 328
           L    + +G G            + VHY G L +   + F D+  D    P  F  G G+
Sbjct: 30  LKYEDLTEGSGAEARA----GQTVSVHYTGWLTD--GQKF-DSSKDR-NDPFAFVLGGGM 81

Query: 329 VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLG 379
           V +G++  V+ M  G +  +T PP   Y        +P  A + +E+ELL 
Sbjct: 82  VIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLD 132

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133

 Score = 49.9 bits (120), Expect = 1e-07
 Identities = 33/136 (24%), Positives = 51/136 (37%), Gaps = 11/136 (8%)

Query: 9   NPQKKKAPSEDDKRRMKIV--PGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVE 66
           +     +        M +V     L    +  G G      G  V+ H T    DG   +
Sbjct: 6   HHHHHSSGLVPRGSHMTVVTTESGLKYEDLTEGSGA-EARAGQTVSVHYTGWLTDGQKFD 64

Query: 67  STRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPS 126
           S++     +  P   VLG   ++ G  EG+  M  G V    + PQ+ YG       A  
Sbjct: 65  SSKD----RNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGAR----GAGG 116

Query: 127 TFPKDEELHFEIEMID 142
             P +  L FE+E++D
Sbjct: 117 VIPPNATLVFEVELLD 132

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133

 Score = 39.5 bits (93), Expect = 6e-04
 Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 7/116 (6%)

Query: 144 AKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTF 202
           +   ++  + G+  + + EG G    RA   V    +    DG+   S ++  +P+ F  
Sbjct: 19  SHMTVVTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVL 77

Query: 203 GKSEVPKGLEMGIGTMTREEKAVIYVTSQY---LTPSPLMPVVEGCEEVHFEVELV 255
           G   V KG + G+  M       + +  Q       +    V+     + FEVEL+
Sbjct: 78  GGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAG--GVIPPNATLVFEVELL 131

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 60.7 bits (146), Expect = 5e-11
 Identities = 27/152 (17%), Positives = 54/152 (35%), Gaps = 17/152 (11%)

Query: 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC 456
            A        R    G+++ A A   + + + +H  P   EE     G     H  +A  
Sbjct: 10  GAYLALSDAQRQLVAGEYDEAAANCRRAM-EISHTMP--PEEAFDHAGFDAFCHAGLAEA 66

Query: 457 LLKLGECRKSIEACNKVL-----------DANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           L  L    +++ + +K L           D     +  +Y R +A   LG   EA  +F+
Sbjct: 67  LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFK 126

Query: 506 MMMKVD---KSSEPDATAALSKLKKQRQEVES 534
            ++++    K   P     +     +  ++ +
Sbjct: 127 KVVEMIEERKGETPGKERMMEVAIDRIAQLGA 158

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 63.7 bits (156), Expect = 5e-11
 Identities = 20/101 (19%), Positives = 29/101 (28%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
              L   G  E A   Y   L+     NP               +  ++   L  LG   
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQ----YNPDLYC-----------VRSDLGNLLKALGRLE 152

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           ++     K ++  P         G  + A GE   A   FE
Sbjct: 153 EAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFE 193

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 63.7 bits (156), Expect = 6e-11
 Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
            +R ++ G FE A+    ++ R      P +             + L +++   +     
Sbjct: 6   AHREYQAGDFEAAERHCMQLWR----QEPDNTG-----------VLLLLSSIHFQCRRLD 50

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           +S       +  NP   +     G  Y   G+ +EA   + 
Sbjct: 51  RSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYR 91

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 62.9 bits (154), Expect = 1e-10
 Identities = 16/101 (15%), Positives = 35/101 (34%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
            +  F+  + + +       ++     NP   E            + N+     + G+ +
Sbjct: 40  SSIHFQCRRLDRSAHFSTLAIK----QNPLLAE-----------AYSNLGNVYKERGQLQ 84

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           ++IE     L   P  + G      A +A G+ E A + + 
Sbjct: 85  EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 62.6 bits (153), Expect = 1e-10
 Identities = 20/101 (19%), Positives = 29/101 (28%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           GN L   G+ E AKA Y K +       P                  N+       GE  
Sbjct: 142 GNLLKALGRLEEAKACYLKAIE----TQPNFAV-----------AWSNLGCVFNAQGEIW 186

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            +I    K +  +P  +      G        F+ A   + 
Sbjct: 187 LAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYL 227

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 62.6 bits (153), Expect = 1e-10
 Identities = 25/121 (20%), Positives = 43/121 (35%), Gaps = 19/121 (15%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
               +++G  +LA   Y + +     + P   +            + N+A  L + G   
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIE----LQPHFPD-----------AYCNLANALKEKGSVA 288

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
           ++ +  N  L   P H   L          G  EEA R +   ++V     P+  AA S 
Sbjct: 289 EAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF----PEFAAAHSN 344

Query: 525 L 525
           L
Sbjct: 345 L 345

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 62.2 bits (152), Expect = 2e-10
 Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G     +G+  LA   +EK +     ++P   +            ++N+   L +     
Sbjct: 176 GCVFNAQGEIWLAIHHFEKAVT----LDPNFLD-----------AYINLGNVLKEARIFD 220

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           +++ A  + L  +P H          Y   G  + A   + 
Sbjct: 221 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR 261

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 61.4 bits (150), Expect = 3e-10
 Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           GN   + G+ + A   Y   LR    + P   +            ++N+AA L+  G+  
Sbjct: 74  GNVYKERGQLQEAIEHYRHALR----LKPDFID-----------GYINLAAALVAAGDME 118

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            +++A    L  NP         G    ALG  EEA+  + 
Sbjct: 119 GAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL 159

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 60.2 bits (147), Expect = 7e-10
 Identities = 20/121 (16%), Positives = 39/121 (32%), Gaps = 19/121 (15%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
            N L ++G    A+  Y   LR    + P   +              N+A    + G   
Sbjct: 278 ANALKEKGSVAEAEDCYNTALR----LCPTHAD-----------SLNNLANIKREQGNIE 322

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
           +++    K L+  P                G+ +EA   ++  +++     P    A S 
Sbjct: 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS----PTFADAYSN 378

Query: 525 L 525
           +
Sbjct: 379 M 379

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 58.7 bits (143), Expect = 2e-09
 Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           GN L +   F+ A A Y + L     ++P               +H N+A    + G   
Sbjct: 210 GNVLKEARIFDRAVAAYLRALS----LSPNHAV-----------VHGNLACVYYEQGLID 254

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            +I+   + ++  P           A    G   EA+  + 
Sbjct: 255 LAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYN 295

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 51.4 bits (124), Expect = 5e-07
 Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 15/92 (16%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
            N   ++G  E A   Y K L     V P+               H N+A+ L + G+ +
Sbjct: 312 ANIKREQGNIEEAVRLYRKALE----VFPEFAA-----------AHSNLASVLQQQGKLQ 356

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGE 496
           +++    + +  +P         G     + +
Sbjct: 357 EALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 50.2 bits (121), Expect = 1e-06
 Identities = 5/55 (9%), Positives = 16/55 (29%)

Query: 451 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           + +A    + G+   +   C ++    P +   L      +      + +     
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFST 57

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209

 Score = 61.4 bits (149), Expect = 6e-11
 Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 269 LIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL 328
           L    + +G G            + VHY G L +   + F D+  D    P  F  G G+
Sbjct: 106 LKYEDLTEGSGAEARA----GQTVSVHYTGWLTD--GQKF-DSSKDR-NDPFAFVLGGGM 157

Query: 329 VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLG 379
           V +G++  V+ M  G +  +T PP   Y        +P  A + +E+ELL 
Sbjct: 158 VIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAAGVIPPNATLVFEVELLD 208

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 35/143 (24%), Positives = 53/143 (37%), Gaps = 11/143 (7%)

Query: 2   AVEDEDINPQKKKAPSEDDKRRMKIV--PGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRT 59
             ED D+          +      +V     L    +  G G      G  V+ H T   
Sbjct: 75  TPEDLDMEDNDIIEAHREQIGGSTVVTTESGLKYEDLTEGSGA-EARAGQTVSVHYTGWL 133

Query: 60  LDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDD 119
            DG   +S++     +  P   VLG   ++ G  EG+  M  G V    + PQ+ YG   
Sbjct: 134 TDGQKFDSSKD----RNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGAR- 188

Query: 120 CPVAAPSTFPKDEELHFEIEMID 142
               A    P +  L FE+E++D
Sbjct: 189 ---GAAGVIPPNATLVFEVELLD 208

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 27/151 (17%), Positives = 51/151 (33%), Gaps = 5/151 (3%)

Query: 83  LGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMID 142
           + K+  L  L+E        E+   +       G        P     ++    E     
Sbjct: 37  IKKTTPLRRLMEAFAKRQGKEMDSLRFLYD---GIRIQADQTPEDLDMEDNDIIEAHREQ 93

Query: 143 FAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFT 201
              + ++  + G+  + + EG G    RA   V    +    DG+   S ++  +P+ F 
Sbjct: 94  IGGSTVVTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFV 152

Query: 202 FGKSEVPKGLEMGIGTMTREEKAVIYVTSQY 232
            G   V KG + G+  M       + +  Q 
Sbjct: 153 LGGGMVIKGWDEGVQGMKVGGVRRLTIPPQL 183

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 63.1 bits (154), Expect = 7e-11
 Identities = 21/123 (17%), Positives = 45/123 (36%), Gaps = 10/123 (8%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G   F+ G+++ A+  +   L     +  +   +      K   L  N+     KL +  
Sbjct: 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVD------KWEPLLNNLGHVCRKLKKYA 253

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
           ++++   + L   P +       G  +  +G FE A   F   + +      D T +++ 
Sbjct: 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR----RDDTFSVTM 309

Query: 525 LKK 527
           L  
Sbjct: 310 LGH 312

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 56.9 bits (138), Expect = 7e-09
 Identities = 12/96 (12%), Positives = 26/96 (27%), Gaps = 15/96 (15%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G+   K  K+  A   + + L     + PQ+              +  +      +G   
Sbjct: 243 GHVCRKLKKYAEALDYHRQALV----LIPQNAS-----------TYSAIGYIHSLMGNFE 287

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEA 500
            +++  +  L         +   G          EA
Sbjct: 288 NAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEA 323

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 56.5 bits (137), Expect = 1e-08
 Identities = 16/116 (13%), Positives = 36/116 (31%), Gaps = 17/116 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLR-DFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC 463
           G+    E + + A A Y    +       P                 L +          
Sbjct: 132 GHSFAVESEHDQAMAAYFTAAQLMKGCHLP----------------MLYIGLEYGLTNNS 175

Query: 464 RKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDAT 519
           + +    ++ L   P     ++  G+     GE++ A++ F   ++  K+   + T
Sbjct: 176 KLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT 231

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 15/102 (14%), Positives = 33/102 (32%), Gaps = 16/102 (15%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
             R +    F++       V+      +P                       L++L +  
Sbjct: 29  AERHYYNCDFKMCYKLTSVVME----KDPFHAS-----------CLPVHIGTLVELNKAN 73

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGE-FEEAQRDFE 505
           +     +K++D  P++    +  G  Y+ +G   E A+R   
Sbjct: 74  ELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLS 115

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 12/102 (11%), Positives = 22/102 (21%), Gaps = 16/102 (15%)

Query: 405 GNRLFKEGK-FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC 463
           G      G   E A+    K       +                   +          E 
Sbjct: 97  GCYYLMVGHKNEHARRYLSKATT----LEKTYGP-----------AWIAYGHSFAVESEH 141

Query: 464 RKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            +++ A              +   G+ Y      + A+R F 
Sbjct: 142 DQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFS 183

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 13/94 (13%), Positives = 34/94 (36%), Gaps = 3/94 (3%)

Query: 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508
           + +++A       + +   +  + V++ +P H   L       + L +  E       ++
Sbjct: 24  VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLV 83

Query: 509 KVDKSSEPDATAAL-SKLKKQRQEVESKARKQFK 541
            +  S+ P +  A+         + E  AR+   
Sbjct: 84  DLYPSN-PVSWFAVGCYYLMVGHKNE-HARRYLS 115

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 60.2 bits (147), Expect = 9e-11
 Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 19/123 (15%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G    +  K++LA     KV       NP +             +   +   L  LG   
Sbjct: 83  GLTYVQVQKYDLAVPLLIKVAE----ANPINFN-----------VRFRLGVALDNLGRFD 127

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
           ++I++    L   P   K       +Y  +G  EEA   F+   ++D      A+  L+ 
Sbjct: 128 EAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD----EGASVELAL 183

Query: 525 LKK 527
           + +
Sbjct: 184 VPR 186

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 59.0 bits (144), Expect = 3e-10
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G    K G++  A    E+V       +  D +           + L++    +K G   
Sbjct: 15  GISHAKAGRYSQAVMLLEQVYD----ADAFDVD-----------VALHLGIAYVKTGAVD 59

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           +  E   + L   P +VK     G+ Y+ + +++ A     
Sbjct: 60  RGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLI 100

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 55.9 bits (136), Expect = 3e-09
 Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G    K G  +      E+ L       P + +           +   +    +++ +  
Sbjct: 49  GIAYVKTGAVDRGTELLERSLA----DAPDNVK-----------VATVLGLTYVQVQKYD 93

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            ++    KV +ANP +    +R G+A   LG F+EA   F+
Sbjct: 94  LAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFK 134

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 45.5 bits (109), Expect = 1e-05
 Identities = 11/56 (19%), Positives = 21/56 (37%)

Query: 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           + +      K G   +++    +V DA+   V      G+AY+  G  +      E
Sbjct: 11  YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLE 66

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G      G   LA+  + + L     + P   E           +   +   L + G   
Sbjct: 50  GVLYDSLGLRALARNDFSQALA----IRPDMPE-----------VFNYLGIYLTQAGNFD 94

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            + EA + VL+ +P +      RG+A    G  + AQ D  
Sbjct: 95  AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLL 135

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 15/101 (14%), Positives = 30/101 (29%), Gaps = 11/101 (10%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
              L    + E+  A+ E++L      + +  +           L          LG   
Sbjct: 12  AVPLQPTLQQEVILARMEQILASRALTDDERAQ-----------LLYERGVLYDSLGLRA 60

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            +    ++ L   P   +     G+     G F+ A   F+
Sbjct: 61  LARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD 101

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 21/137 (15%), Positives = 39/137 (28%), Gaps = 15/137 (10%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G  L + G F+ A   ++ VL     ++P  +             HLN    L   G  +
Sbjct: 84  GIYLTQAGNFDAAYEAFDSVLE----LDPTYNY-----------AHLNRGIALYYGGRDK 128

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
            + +        +P          +A   L E +  +   +   K DK            
Sbjct: 129 LAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYL 188

Query: 525 LKKQRQEVESKARKQFK 541
                Q +  + +    
Sbjct: 189 GNISEQTLMERLKADAT 205

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 10/99 (10%), Positives = 26/99 (26%), Gaps = 15/99 (15%)

Query: 407 RLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS 466
            + ++   E  KA           +     E            +  +    L LG+   +
Sbjct: 190 NISEQTLMERLKADATDNTS----LAEHLSE-----------TNFYLGKYYLSLGDLDSA 234

Query: 467 IEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
                  +  N  +        +    LG+ ++   + +
Sbjct: 235 TALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESD 273

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 60.2 bits (147), Expect = 2e-10
 Identities = 19/101 (18%), Positives = 39/101 (38%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           GN    +  ++ AK  +EK LR       ++ +           L   +   L+KL + +
Sbjct: 98  GNVYVVKEMYKEAKDMFEKALR----AGMENGD-----------LFYMLGTVLVKLEQPK 142

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            ++    + ++ N    +  ++ GM     G  +EA   F 
Sbjct: 143 LALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFA 183

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 60.2 bits (147), Expect = 2e-10
 Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
             R  + G +E A   + K +      N +D              ++N A  L  + E  
Sbjct: 30  MGRGSEFGDYEKAAEAFTKAIE----ENKEDAI-----------PYINFANLLSSVNELE 74

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           +++   +K L+ + +     Y  G  Y+    ++EA+  FE
Sbjct: 75  RALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFE 115

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 59.1 bits (144), Expect = 7e-10
 Identities = 15/101 (14%), Positives = 30/101 (29%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
            N L    + E A A Y+K L     ++                 +       +     +
Sbjct: 64  ANLLSSVNELERALAFYDKALE----LDSSAAT-----------AYYGAGNVYVVKEMYK 108

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           ++ +   K L A   +    Y  G   + L + + A    +
Sbjct: 109 EAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQ 149

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 58.7 bits (143), Expect = 8e-10
 Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G  L K  + +LA    ++ +     +N  D E                  CL   G   
Sbjct: 132 GTVLVKLEQPKLALPYLQRAVE----LNENDTE-----------ARFQFGMCLANEGMLD 176

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           +++     V + +P H    Y  G+ Y      E+A    +
Sbjct: 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLD 217

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 49.4 bits (119), Expect = 9e-07
 Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 15/92 (16%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G  L  EG  + A +++  V       +P   +              N            
Sbjct: 166 GMCLANEGMLDEALSQFAAVTE----QDPGHAD-----------AFYNAGVTYAYKENRE 210

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGE 496
           K++E  +K +D  P H+  L+ + +       
Sbjct: 211 KALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 48.7 bits (117), Expect = 2e-06
 Identities = 10/89 (11%), Positives = 24/89 (26%), Gaps = 11/89 (12%)

Query: 417 AKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476
           +   +           P+            ++          + G+  K+ EA  K ++ 
Sbjct: 4   SHHHHHHSSGLV----PRGSHM-------ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE 52

Query: 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           N               ++ E E A   ++
Sbjct: 53  NKEDAIPYINFANLLSSVNELERALAFYD 81

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 18/142 (12%), Positives = 51/142 (35%), Gaps = 20/142 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G  L+++ ++E A  +  +  +D   + P+              +  N+    L++ +  
Sbjct: 112 GGFLYEQKRYEEAYQRLLEASQDT--LYPERSR-----------VFENLGLVSLQMKKPA 158

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDA---TAA 521
           ++ E   K L  N                  E+  A++ +++  +    +   +      
Sbjct: 159 QAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN-ARSLLLGIR 217

Query: 522 LSKLKKQRQEVES---KARKQF 540
           L+K+ + R    S   + ++ +
Sbjct: 218 LAKVFEDRDTAASYGLQLKRLY 239

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 55.7 bits (135), Expect = 7e-09
 Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G    + G  E AK    K L     ++P   +            H  +A       E +
Sbjct: 44  GLGYLQRGNTEQAKVPLRKALE----IDPSSAD-----------AHAALAVVFQTEMEPK 88

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            + E   K L ++  + + L   G        +EEA +   
Sbjct: 89  LADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLL 129

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 10/101 (9%), Positives = 29/101 (28%), Gaps = 16/101 (15%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
            + L   G     +    K  +       +  +            ++ +    L+ G   
Sbjct: 11  SSGLVPRGSHMGDQN-PLKTDKG----RDEARD-----------AYIQLGLGYLQRGNTE 54

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           ++     K L+ +P+         + +    E + A  ++ 
Sbjct: 55  QAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYR 95

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 61.4 bits (149), Expect = 4e-10
 Identities = 15/121 (12%), Positives = 32/121 (26%), Gaps = 19/121 (15%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
            +     G     +   ++ L     ++P   E               +           
Sbjct: 30  ADAELGMGDTTAGEMAVQRGLA----LHPGHPE-----------AVARLGRVRWTQQRHA 74

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
           ++     +  DA P H       G A    G+ E A   +    ++     P+     ++
Sbjct: 75  EAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL----PEEPYITAQ 130

Query: 525 L 525
           L
Sbjct: 131 L 131

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 52.2 bits (125), Expect = 4e-07
 Identities = 18/114 (15%), Positives = 29/114 (25%), Gaps = 19/114 (16%)

Query: 412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN 471
                   +    +R      PQD               L +A   L +G+      A  
Sbjct: 3   ADGPRELLQLRAAVR----HRPQDFV-----------AWLMLADAELGMGDTTAGEMAVQ 47

Query: 472 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525
           + L  +P H + + R G          EA    +          P+       L
Sbjct: 48  RGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA----PEHPGIALWL 97

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 61.4 bits (149), Expect = 4e-10
 Identities = 17/123 (13%), Positives = 33/123 (26%), Gaps = 12/123 (9%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G   F +   + A   ++  L         +                N+     KL    
Sbjct: 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEK--------PWAATWANLGHAYRKLKMYD 533

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
            +I+A N+ L  +           + Y+       A       + +     P+   A   
Sbjct: 534 AAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS----PNEIMASDL 589

Query: 525 LKK 527
           LK+
Sbjct: 590 LKR 592

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 58.3 bits (141), Expect = 4e-09
 Identities = 13/108 (12%), Positives = 23/108 (21%), Gaps = 22/108 (20%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G +  + G   LA    +        +   D             L   +        + +
Sbjct: 448 GMQHMQLGNILLANEYLQSSYA----LFQYDPL-----------LLNELGVVAFNKSDMQ 492

Query: 465 KSIEACNKVLDA-------NPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            +I      L                    G AY  L  ++ A     
Sbjct: 493 TAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 57.5 bits (139), Expect = 7e-09
 Identities = 18/124 (14%), Positives = 38/124 (30%), Gaps = 18/124 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
            +    EG+ + A + Y    R    +                  +L +    ++LG   
Sbjct: 414 AHSFAIEGEHDQAISAYTTAAR----LFQGTHL-----------PYLFLGMQHMQLGNIL 458

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE---MMMKVDKSSEPDATAA 521
            + E               L   G+      + + A   F+   +++K  +S+E    A 
Sbjct: 459 LANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT 518

Query: 522 LSKL 525
            + L
Sbjct: 519 WANL 522

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 57.5 bits (139), Expect = 8e-09
 Identities = 17/101 (16%), Positives = 26/101 (25%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G       K   A+  + K       ++PQ                +  A      GE  
Sbjct: 380 GIYYLCVNKISEARRYFSKSST----MDPQFGP-----------AWIGFAHSFAIEGEHD 424

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           ++I A                  GM +M LG    A    +
Sbjct: 425 QAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQ 465

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 18/124 (14%), Positives = 38/124 (30%), Gaps = 27/124 (21%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE----EGKVFV--GKRNLL--------- 449
            + LF   +F    A   K+L     ++P + +            G++N L         
Sbjct: 312 ADTLFVRSRFIDVLAITTKILE----IDPYNLDVYPLHLASLHESGEKNKLYLISNDLVD 367

Query: 450 --------HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQ 501
                    L V    L + +  ++    +K    +P           ++   GE ++A 
Sbjct: 368 RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAI 427

Query: 502 RDFE 505
             + 
Sbjct: 428 SAYT 431

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 21/154 (13%), Positives = 41/154 (26%), Gaps = 26/154 (16%)

Query: 394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNV 453
             ++A  +R        +   E    + E  L   N    +  +           L L  
Sbjct: 264 SKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING-LEKSSD-----------LLLCK 311

Query: 454 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513
           A  L         +    K+L+ +P ++        +    GE  +       ++     
Sbjct: 312 ADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE 371

Query: 514 SEPDATA------ALSKLKKQRQEVESKARKQFK 541
               A            + K      S+AR+ F 
Sbjct: 372 K---AVTWLAVGIYYLCVNKI-----SEARRYFS 397

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 12/87 (13%), Positives = 25/87 (28%), Gaps = 15/87 (17%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G+   K   ++ A     + L     ++  D             +H  +A   L      
Sbjct: 523 GHAYRKLKMYDAAIDALNQGLL----LSTNDAN-----------VHTAIALVYLHKKIPG 567

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAY 491
            +I   ++ L  +P  +        A 
Sbjct: 568 LAITHLHESLAISPNEIMASDLLKRAL 594

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 60.4 bits (147), Expect = 5e-10
 Identities = 12/101 (11%), Positives = 27/101 (26%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G  + K      A   +E V +      P+ +E              ++     +  +  
Sbjct: 28  GLSMLKLANLAEAALAFEAVCQ----AAPEREE-----------AWRSLGLTQAENEKDG 72

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            +I A N     +P  +       +++        A     
Sbjct: 73  LAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLR 113

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 18/101 (17%), Positives = 41/101 (40%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G        ++ A A   + +     + P D +           L   + A L      +
Sbjct: 179 GVLYNLSNNYDSAAANLRRAVE----LRPDDAQ-----------LWNKLGATLANGNRPQ 223

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           ++++A N+ LD NP +V+ +Y   ++Y  + +++ A +   
Sbjct: 224 EALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLV 264

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 16/105 (15%), Positives = 29/105 (27%), Gaps = 8/105 (7%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE----EGKVFVGKRNLLHLNVAACLLKL 460
                 E     A A     L       PQ ++      +  V   +L   +        
Sbjct: 96  AVSHTNEHNANAALASLRAWLL----SQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAP 151

Query: 461 GECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            E R+     +  L+ NP   +     G+ Y     ++ A  +  
Sbjct: 152 NEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLR 196

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 10/96 (10%), Positives = 24/96 (25%), Gaps = 15/96 (15%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
                   ++   +      L     +NP D +           LH ++           
Sbjct: 145 DFFFAAPNEYRECRTLLHAALE----MNPNDAQ-----------LHASLGVLYNLSNNYD 189

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEA 500
            +     + ++  P   +   + G         +EA
Sbjct: 190 SAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEA 225

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 13/116 (11%), Positives = 28/116 (24%), Gaps = 30/116 (25%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G    +  K  LA             ++P+D             +H  +A          
Sbjct: 62  GLTQAENEKDGLAIIALNHARM----LDPKDIA-----------VHAALAVSHTNEHNAN 106

Query: 465 KSIEACNKVLDANPAHV---------------KGLYRRGMAYMALGEFEEAQRDFE 505
            ++ +    L + P +                  +      + A  E+ E +    
Sbjct: 107 AALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLH 162

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 15/94 (15%), Positives = 22/94 (23%), Gaps = 15/94 (15%)

Query: 412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN 471
           G        Y      F   NP    E            +     +LKL    ++  A  
Sbjct: 1   GHMLQNNTDYP-----FEANNPYMYHEN----------PMEEGLSMLKLANLAEAALAFE 45

Query: 472 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            V  A P   +     G+      +   A     
Sbjct: 46  AVCQAAPEREEAWRSLGLTQAENEKDGLAIIALN 79

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 58.2 bits (141), Expect = 8e-10
 Identities = 14/101 (13%), Positives = 34/101 (33%), Gaps = 18/101 (17%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G     +  ++ A       L  F+ V                 +  N+      L    
Sbjct: 13  GVLAADKKDWKGA-------LDAFSAVQDPHSR-----------ICFNIGCMYTILKNMT 54

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           ++ +A  + ++ +       ++RGM Y    +++ A +D +
Sbjct: 55  EAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLK 95

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 43.2 bits (102), Expect = 8e-05
 Identities = 12/143 (8%), Positives = 34/143 (23%), Gaps = 32/143 (22%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G           A+  + + +      +                 +        +  +  
Sbjct: 44  GCMYTILKNMTEAEKAFTRSIN----RDKHLAV-----------AYFQRGMLYYQTEKYD 88

Query: 465 KSIEACNKVLDANPA----------------HVKGLYRRGMAYMALGEFEEAQRDFEMMM 508
            +I+   + L                       + LY     Y    E+++A+    +  
Sbjct: 89  LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148

Query: 509 KVD-KSSEPDATAALSKLKKQRQ 530
            +  +        A+  + KQ+ 
Sbjct: 149 SMKSEPRHSKIDKAMECVWKQKL 171

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 54.8 bits (133), Expect = 2e-09
 Identities = 13/103 (12%), Positives = 34/103 (33%), Gaps = 17/103 (16%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G   +  G +  +   +EK ++    ++P++ +             L     L  L    
Sbjct: 13  GVLQYDAGNYTESIDLFEKAIQ----LDPEESK-----------YWLMKGKALYNLERYE 57

Query: 465 KSIEACNKVLD--ANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           ++++  N V++   +  +      +  A   +   E      E
Sbjct: 58  EAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAE 100

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 50.5 bits (122), Expect = 5e-08
 Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 7/91 (7%)

Query: 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509
           +          G   +SI+   K +  +P   K    +G A   L  +EEA   +  ++ 
Sbjct: 9   YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVIN 68

Query: 510 VDKSSEPDATA------ALSKLKKQRQEVES 534
           V +    +         AL  ++ +  E E 
Sbjct: 69  VIEDEY-NKDVWAAKADALRYIEGKEVEAEI 98

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 16/101 (15%), Positives = 33/101 (32%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G +  KEG   +     E  +      +P D E               +     +    +
Sbjct: 72  GLKRLKEGDLPVTILFMEAAIL----QDPGDAE-----------AWQFLGITQAENENEQ 116

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            +I A  + L+  P ++K L    ++Y      ++A    +
Sbjct: 117 AAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALK 157

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G      G+F  A   +   L     V P+D             L   + A L       
Sbjct: 220 GVLFHLSGEFNRAIDAFNAALT----VRPEDYS-----------LWNRLGATLANGDRSE 264

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           +++EA  + L+  P  ++  Y  G++ + LG + EA  +F 
Sbjct: 265 EAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFL 305

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 51.2 bits (123), Expect = 5e-07
 Identities = 11/109 (10%), Positives = 32/109 (29%), Gaps = 15/109 (13%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G    +    + A    ++ L     + P + +             + +A         +
Sbjct: 106 GITQAENENEQAAIVALQRCLE----LQPNNLK-----------ALMALAVSYTNTSHQQ 150

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 513
            + EA    +  NP +   +  +  +        ++  D  ++  V + 
Sbjct: 151 DACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKEL 199

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 17/108 (15%), Positives = 31/108 (28%), Gaps = 11/108 (10%)

Query: 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACL 457
            E  R       +E + ++  +  EK    F+  NP  D  G                  
Sbjct: 27  EEMARRNWISENQEAQNQVTVSASEKGYY-FHTENPFKDWPG----------AFEEGLKR 75

Query: 458 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           LK G+   +I      +  +P   +     G+        + A    +
Sbjct: 76  LKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQ 123

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 17/102 (16%), Positives = 25/102 (24%), Gaps = 15/102 (14%)

Query: 405 GNRLFKEGKFELAKA---KYEKVLRDFN---HVNPQDDEEGKVFVGKRNLLHLNVAACLL 458
                   +   +       E V   +    H N    +           L   +     
Sbjct: 174 KGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPD---------LQTGLGVLFH 224

Query: 459 KLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEA 500
             GE  ++I+A N  L   P       R G         EEA
Sbjct: 225 LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEA 266

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 44.3 bits (105), Expect = 9e-05
 Identities = 13/113 (11%), Positives = 27/113 (23%), Gaps = 27/113 (23%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
                     + A    +  ++     NP+              L  N            
Sbjct: 140 AVSYTNTSHQQDACEALKNWIK----QNPKYKY-----------LVKNKKGSPGLTRRMS 184

Query: 465 KSIEACNKVLDANPAHVKGLYR------------RGMAYMALGEFEEAQRDFE 505
           KS    + +      +++  ++             G+ +   GEF  A   F 
Sbjct: 185 KSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFN 237

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 58.2 bits (140), Expect = 2e-09
 Identities = 24/143 (16%), Positives = 46/143 (32%), Gaps = 18/143 (12%)

Query: 408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR--K 465
           L K  + +LA+ + +K+       +               L  L  A   L  G  +   
Sbjct: 140 LLKLDRLDLARKELKKMQD----QDEDAT-----------LTQLATAWVSLAAGGEKLQD 184

Query: 466 SIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525
           +     ++ D     +  L  +   +MA G +E A+   +  +  D S  P+    L  L
Sbjct: 185 AYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVL 243

Query: 526 KKQRQEVESKARKQFKGLFDKKP 548
            +   +      +    L D   
Sbjct: 244 SQHLGKPPEVTNRYLSQLKDAHR 266

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 14/101 (13%), Positives = 31/101 (30%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G R  +EG    A   +E  ++     +P+  E               +     +  +  
Sbjct: 71  GLRRLQEGDLPNAVLLFEAAVQ----QDPKHME-----------AWQYLGTTQAENEQEL 115

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            +I A  + L+  P +   L    +++       +A     
Sbjct: 116 LAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILR 156

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 57.0 bits (138), Expect = 8e-09
 Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G      G+++ A   +   L     V P D             L   + A L    +  
Sbjct: 224 GVLFNLSGEYDKAVDCFTAALS----VRPNDYL-----------LWNKLGATLANGNQSE 268

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           +++ A  + L+  P +++  Y  G++ + LG   EA   F 
Sbjct: 269 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFL 309

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 15/107 (14%), Positives = 26/107 (24%), Gaps = 10/107 (9%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE----EGKVFVGKRNLLHLNVAACLLKL 460
                 E     A       LR      P          +   G        +   LL  
Sbjct: 139 AVSFTNESLQRQACEILRDWLR----YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194

Query: 461 GECRKSIEACNKVLDANPAHV--KGLYRRGMAYMALGEFEEAQRDFE 505
               +  E     +  +P  +        G+ +   GE+++A   F 
Sbjct: 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFT 241

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 14/97 (14%), Positives = 27/97 (27%), Gaps = 11/97 (11%)

Query: 409 FKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIE 468
           +     +L  A Y+K  + F   NP  D                     L+ G+   ++ 
Sbjct: 37  WLSDYDDLTSATYDKGYQ-FEEENPLRDHPQ----------PFEEGLRRLQEGDLPNAVL 85

Query: 469 ACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
                +  +P H++     G       +   A     
Sbjct: 86  LFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALR 122

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 14/96 (14%), Positives = 27/96 (28%), Gaps = 13/96 (13%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
              L  +  F   K  +   +R    ++P   +           +   +       GE  
Sbjct: 188 LGSLLSDSLFLEVKELFLAAVR----LDPTSIDPD---------VQCGLGVLFNLSGEYD 234

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEA 500
           K+++     L   P       + G       + EEA
Sbjct: 235 KAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEA 270

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 17/108 (15%), Positives = 30/108 (27%), Gaps = 26/108 (24%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G  L    + E A A Y + L     + P                  N+    + LG  R
Sbjct: 258 GATLANGNQSEEAVAAYRRALE----LQPGYIR-----------SRYNLGISCINLGAHR 302

Query: 465 KSIEACNKVLDANPAHVKGLYRR-----------GMAYMALGEFEEAQ 501
           +++E   + L+                        +A   LG+ +   
Sbjct: 303 EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 15/116 (12%), Positives = 30/116 (25%), Gaps = 30/116 (25%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G    +  +  LA +   + L     + P +               + +A         R
Sbjct: 105 GTTQAENEQELLAISALRRCLE----LKPDNQT-----------ALMALAVSFTNESLQR 149

Query: 465 KSIEACNKVLDANPAHVK---------------GLYRRGMAYMALGEFEEAQRDFE 505
           ++ E     L   PA+                    R   + ++   F E +  F 
Sbjct: 150 QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFL 205

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 19/122 (15%)

Query: 269 LIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL 328
           L       G G   +       L+  HY G L N   KVF D+  +  G+PL F  G G 
Sbjct: 14  LAFCDKVVGYGPEAV----KGQLIKAHYVGKLEN--GKVF-DSSYNR-GKPLTFRIGVGE 65

Query: 329 VPEGFEMCV------RLMLPGEIALVTCPPDYAY-----DKFLRPANVPEGAHIQWEIEL 377
           V +G++  +        ML G    +  PP+ AY             +P  + + ++IE 
Sbjct: 66  VIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEY 125

Query: 378 LG 379
           +G
Sbjct: 126 IG 127

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 12/134 (8%)

Query: 18  EDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGI 77
           E       + P  L       G G      G  +  H   +  +G + +S+ +    +G 
Sbjct: 1   ETTSCEFSVSPSGLAFCDKVVGYGP-EAVKGQLIKAHYVGKLENGKVFDSSYN----RGK 55

Query: 78  PIRHVLGKSKILLGLLEGI------PTMLKGEVSMFKMKPQMHYGEDDC-PVAAPSTFPK 130
           P+   +G  +++ G  +GI      P ML G     ++ P++ YG+            P 
Sbjct: 56  PLTFRIGVGEVIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPP 115

Query: 131 DEELHFEIEMIDFA 144
              L F+IE I  A
Sbjct: 116 ASVLLFDIEYIGKA 129

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Length = 167

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 9/118 (7%)

Query: 269 LIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL 328
           L+ +RI  G G+     P  D    VHY G L +    VF D+  +  G+P  F   E  
Sbjct: 39  LVFQRIARGSGK---RAPAIDDKCEVHYTGRLRD--GTVF-DSSRER-GKPTTFRPNE-- 89

Query: 329 VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDW 386
           V +G+   ++LM  G+   +  P D AY        +P  + +++++EL+  +     
Sbjct: 90  VIKGWTEALQLMREGDRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELISIKDGGKG 147

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Length = 167

 Score = 48.5 bits (116), Expect = 7e-07
 Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 10/117 (8%)

Query: 31  LMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILL 90
           L+   +  G G   P+  D+   H T R  DG + +S+R     +G P        +++ 
Sbjct: 39  LVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRE----RGKPTTFRPN--EVIK 92

Query: 91  GLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAK 147
           G  E +  M +G+     +   + YG            P    L F++E+I      
Sbjct: 93  GWTEALQLMREGDRWRLFIPYDLAYGVTG----GGGMIPPYSPLEFDVELISIKDGG 145

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 55.1 bits (134), Expect = 2e-09
 Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           GN  +K+G ++ A   Y+K L     ++P+  E              N+     K G+  
Sbjct: 8   GNAYYKQGDYDEAIEYYQKALE----LDPRSAE-----------AWYNLGNAYYKQGDYD 52

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           ++IE   K L+ +P   +  Y  G AY   G+++EA   ++
Sbjct: 53  EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 93

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 50.9 bits (123), Expect = 6e-08
 Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           GN  +K+G ++ A   Y+K L     ++P+  E              N+     K G+  
Sbjct: 42  GNAYYKQGDYDEAIEYYQKALE----LDPRSAE-----------AWYNLGNAYYKQGDYD 86

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           ++IE   K L+ +P   +  Y  G AY   G+++EA   ++
Sbjct: 87  EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 41.6 bits (99), Expect = 1e-04
 Identities = 15/56 (26%), Positives = 27/56 (48%)

Query: 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
             N+     K G+  ++IE   K L+ +P   +  Y  G AY   G+++EA   ++
Sbjct: 4   WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 59

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 58.2 bits (141), Expect = 5e-09
 Identities = 13/130 (10%), Positives = 28/130 (21%), Gaps = 18/130 (13%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           ++   I   G         +       +       + P+                 +   
Sbjct: 376 EQVVAIASNGGGKQALETVQRLLPVLCQAHG----LTPEQVVA-----------IASHDG 420

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
               L   ++ +    +     P  V  +   G    AL          +       +  
Sbjct: 421 GKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPD---PALAALT 477

Query: 516 PDATAALSKL 525
            D   AL+ L
Sbjct: 478 NDHLVALACL 487

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 57.5 bits (139), Expect = 7e-09
 Identities = 8/116 (6%), Positives = 20/116 (17%), Gaps = 15/116 (12%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
            +   I             +       +       + P+                 +   
Sbjct: 104 QQVVAIASHDGGKQALETVQRLLPVLCQAHG----LTPEQVV-----------AIASHDG 148

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511
               L   +  +    +     P  V  +   G    AL   +           + 
Sbjct: 149 GKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 204

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 10/128 (7%), Positives = 25/128 (19%), Gaps = 19/128 (14%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
            +   I             +       +       + PQ                 +   
Sbjct: 274 QQVVAIASNSGGKQALETVQRLLPVLCQAHG----LTPQQVVA-----------IASNGG 318

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
               L   ++ +    +     P  V  +        AL   +           +     
Sbjct: 319 GKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLT---- 374

Query: 516 PDATAALS 523
           P+   A++
Sbjct: 375 PEQVVAIA 382

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 7/110 (6%), Positives = 19/110 (17%), Gaps = 15/110 (13%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
            +   I             +       +       + P+                 +   
Sbjct: 342 QQVVAIASHDGGKQALETVQRLLPVLCQAHG----LTPEQVV-----------AIASNGG 386

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
               L   ++ +    +     P  V  +        AL   +       
Sbjct: 387 GKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLC 436

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 54.0 bits (130), Expect = 9e-08
 Identities = 12/129 (9%), Positives = 27/129 (20%), Gaps = 19/129 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G         +       +       + PQ                 +       L   +
Sbjct: 215 GGGKQALETVQRLLPVLCQAHG----LTPQQVV-----------AIASNGGGKQALETVQ 259

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
           + +    +     P  V  +        AL   +           +     P    A++ 
Sbjct: 260 RLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLT----PQQVVAIAS 315

Query: 525 LKKQRQEVE 533
               +Q +E
Sbjct: 316 NGGGKQALE 324

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 10/110 (9%), Positives = 22/110 (20%), Gaps = 15/110 (13%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           ++   I   G         +       +       + PQ                 +   
Sbjct: 172 EQVVAIASNGGGKQALETVQRLLPVLCQAHG----LTPQQVV-----------AIASNGG 216

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
               L   ++ +    +     P  V  +   G    AL   +       
Sbjct: 217 GKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLC 266

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 8/96 (8%), Positives = 19/96 (19%), Gaps = 12/96 (12%)

Query: 411 EGKFELAKAKYEKVLRDF-NHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEA 469
                 A   +   L     ++ P+                 +       L   ++ +  
Sbjct: 46  GVTAVEAVHAWRNALTGAPLNLTPEQVVA-----------IASHDGGKQALETVQRLLPV 94

Query: 470 CNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
             +     P  V  +        AL   +       
Sbjct: 95  LCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLC 130

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 58.3 bits (140), Expect = 5e-09
 Identities = 22/128 (17%), Positives = 47/128 (36%), Gaps = 19/128 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
            + L ++GK + A   Y++ +R    ++P   +            + N+   L ++ + +
Sbjct: 50  ASVLQQQGKLQEALMHYKEAIR----ISPTFAD-----------AYSNMGNTLKEMQDVQ 94

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
            +++   + +  NPA           +   G   EA   +   +K+     PD   A   
Sbjct: 95  GALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK----PDFPDAYCN 150

Query: 525 LKKQRQEV 532
           L    Q V
Sbjct: 151 LAHCLQIV 158

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 55.2 bits (132), Expect = 5e-08
 Identities = 21/121 (17%), Positives = 44/121 (36%), Gaps = 19/121 (15%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
            N   ++G  E A   Y K L     V P+               H N+A+ L + G+ +
Sbjct: 16  ANIKREQGNIEEAVRLYRKALE----VFPEFAA-----------AHSNLASVLQQQGKLQ 60

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
           +++    + +  +P         G     + + + A + +   ++++    P    A S 
Sbjct: 61  EALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN----PAFADAHSN 116

Query: 525 L 525
           L
Sbjct: 117 L 117

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 47.9 bits (113), Expect = 9e-06
 Identities = 15/110 (13%), Positives = 33/110 (30%), Gaps = 15/110 (13%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
             A+     GN L +    + A   Y + ++    +NP   +            H N+A+
Sbjct: 75  TFADAYSNMGNTLKEMQDVQGALQCYTRAIQ----INPAFAD-----------AHSNLAS 119

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
                G   ++I +    L   P               + ++ +     +
Sbjct: 120 IHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMK 169

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 53.6 bits (129), Expect = 5e-09
 Identities = 12/101 (11%), Positives = 27/101 (26%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G  + K      A   +E V +      P+ +E              ++     +  +  
Sbjct: 24  GLSMLKLANLAEAALAFEAVCQ----KEPEREE-----------AWRSLGLTQAENEKDG 68

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            +I A N     +P  +       +++        A     
Sbjct: 69  LAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLR 109

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 16/98 (16%), Positives = 25/98 (25%), Gaps = 14/98 (14%)

Query: 428 FNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRR 487
           F   NP    E            +     +LKL    ++  A   V    P   +     
Sbjct: 8   FEANNPYMYHEN----------PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSL 57

Query: 488 GMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 525
           G+      +   A         +D    P   A  + L
Sbjct: 58  GLTQAENEKDGLAIIALNHARMLD----PKDIAVHAAL 91

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Length = 213

 Score = 55.4 bits (134), Expect = 6e-09
 Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 10/110 (9%)

Query: 274 IRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGF 333
           I  G G  P         + V Y G L++    VF D+     G+P  F   +  V  G+
Sbjct: 113 INSGNGVKPGK----SDTVTVEYTGRLID--GTVF-DSTEKT-GKPATFQVSQ--VIPGW 162

Query: 334 EMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKP 383
              ++LM  G    +  P   AY        +     + ++I L+  +K 
Sbjct: 163 TEALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLISVKKS 212

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Length = 213

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 11/112 (9%)

Query: 35  VMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLE 94
           V+  G G   P   D V    T R +DG + +ST       G P    + +  ++ G  E
Sbjct: 112 VINSGNGVK-PGKSDTVTVEYTGRLIDGTVFDSTEK----TGKPATFQVSQ--VIPGWTE 164

Query: 95  GIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKA 146
            +  M  G      +   + YG              +E L F+I +I   K+
Sbjct: 165 ALQLMPAGSTWEIYVPSGLAYGPRS----VGGPIGPNETLIFKIHLISVKKS 212

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 55.7 bits (135), Expect = 7e-09
 Identities = 22/138 (15%), Positives = 38/138 (27%), Gaps = 17/138 (12%)

Query: 405 GNRLFKE-GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC 463
           G  L     +   + A ++K L D     P                +LN   C  K G+ 
Sbjct: 83  GWFLCGRLNRPAESMAYFDKALAD--PTYPTPYI-----------ANLNKGICSAKQGQF 129

Query: 464 RKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDA---TA 520
             +     + L A P             M  G+  +A   F+      +  + D      
Sbjct: 130 GLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGW 189

Query: 521 ALSKLKKQRQEVESKARK 538
            ++K     Q       +
Sbjct: 190 KIAKALGNAQAAYEYEAQ 207

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 16/102 (15%), Positives = 29/102 (28%), Gaps = 16/102 (15%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
                +   +  A A  E  L+     +P+++              L  A     L    
Sbjct: 15  AMEYMRGQDYRQATASIEDALK----SDPKNEL-----------AWLVRAEIYQYLKVND 59

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMA-LGEFEEAQRDFE 505
           K+ E+  + L   P   +     G      L    E+   F+
Sbjct: 60  KAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFD 101

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 10/57 (17%), Positives = 23/57 (40%)

Query: 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           +   +A   ++  + R++  +    L ++P +      R   Y  L   ++AQ  F 
Sbjct: 10  IKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFR 66

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} Length = 219

 Score = 55.5 bits (134), Expect = 8e-09
 Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 13/109 (11%)

Query: 274 IRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGF 333
           +  G G  P      +  + V Y G L +   K+F     D   QP  F     ++  G+
Sbjct: 124 LTPGTGPKPDA----NGRVEVRYVGRLPD--GKIF-----DQSTQPQWFRLD-SVIS-GW 170

Query: 334 EMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEK 382
              ++ M  G    +  P D AY        +     + +EIEL+   +
Sbjct: 171 TSALQNMPTGAKWRLVIPSDQAYGAEGAGDLIDPFTPLVFEIELIAVSQ 219

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} Length = 219

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 23/111 (20%), Positives = 35/111 (31%), Gaps = 14/111 (12%)

Query: 35  VMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLE 94
            + PG G   P    +V      R  DG I + +         P    L    ++ G   
Sbjct: 123 ELTPGTGPK-PDANGRVEVRYVGRLPDGKIFDQS-------TQPQWFRLD--SVISGWTS 172

Query: 95  GIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAK 145
            +  M  G      +     YG +     A         L FEIE+I  ++
Sbjct: 173 ALQNMPTGAKWRLVIPSDQAYGAEG----AGDLIDPFTPLVFEIELIAVSQ 219

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 52.4 bits (127), Expect = 1e-08
 Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 15/101 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           GN  +K+G ++ A   Y+K L     ++P + E              N+     K G+  
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALE----LDPNNAE-----------AWYNLGNAYYKQGDYD 60

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           ++IE   K L+ +P + +  Y  G AY   G+++EA   ++
Sbjct: 61  EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 101

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 43.5 bits (104), Expect = 2e-05
 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 10/74 (13%)

Query: 432 NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAY 491
           +P +  E             N+     K G+  ++IE   K L+ +P + +  Y  G AY
Sbjct: 4   DPGNSAEA----------WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 53

Query: 492 MALGEFEEAQRDFE 505
              G+++EA   ++
Sbjct: 54  YKQGDYDEAIEYYQ 67

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 42.8 bits (102), Expect = 4e-05
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 15/91 (16%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           GN  +K+G ++ A   Y+K L     ++P + E              N+     K G+  
Sbjct: 50  GNAYYKQGDYDEAIEYYQKALE----LDPNNAE-----------AWYNLGNAYYKQGDYD 94

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALG 495
           ++IE   K L+ +P + +     G A    G
Sbjct: 95  EAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 53.7 bits (130), Expect = 3e-08
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 16/102 (15%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G      G+ + A+A  ++ L     +    +            +   +A   L +G   
Sbjct: 125 GLVYALLGERDKAEASLKQALA----LEDTPE------------IRSALAELYLSMGRLD 168

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEM 506
           +++    K L+  P  +    R   A +  G+ EEA R   +
Sbjct: 169 EALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 26/112 (23%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G +L+  G+++ A   +E+ L+     NPQD E               +A   LKLG   
Sbjct: 12  GVQLYALGRYDAALTLFERALK----ENPQDPE-----------ALYWLARTQLKLGLVN 56

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMAL-----------GEFEEAQRDFE 505
            ++E    ++   P ++ G      AY+AL           G  E+A    +
Sbjct: 57  PALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLK 108

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 50.2 bits (121), Expect = 4e-07
 Identities = 16/133 (12%), Positives = 38/133 (28%), Gaps = 22/133 (16%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE----EGKVFVGKRNLLHLNVAACLLKL 460
                K G    A    + ++       P+         + +V     L+          
Sbjct: 46  ARTQLKLGLVNPALENGKTLVA----RTPRYLGGYMVLSEAYVA----LYRQAEDRERGK 97

Query: 461 GECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATA 520
           G   +++         NP +     +RG+ Y  LGE ++A+   +  + ++         
Sbjct: 98  GYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE----DTPEI 153

Query: 521 ------ALSKLKK 527
                     + +
Sbjct: 154 RSALAELYLSMGR 166

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 48.7 bits (117), Expect = 1e-06
 Identities = 21/108 (19%), Positives = 35/108 (32%), Gaps = 16/108 (14%)

Query: 398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACL 457
               R   +R   +G  E A +  +   R    VNP+              LHL      
Sbjct: 84  VALYRQAEDRERGKGYLEQALSVLKDAER----VNPRYAP-----------LHLQRGLVY 128

Query: 458 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
             LGE  K+  +  + L       +        Y+++G  +EA   + 
Sbjct: 129 ALLGERDKAEASLKQALALED-TPEIRSALAELYLSMGRLDEALAQYA 175

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 44.4 bits (106), Expect = 3e-05
 Identities = 12/56 (21%), Positives = 20/56 (35%)

Query: 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            L +   L  LG    ++    + L  NP   + LY      + LG    A  + +
Sbjct: 8   PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGK 63

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 51.3 bits (123), Expect = 4e-08
 Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 12/94 (12%)

Query: 412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN 471
           G    A   YEK +   + +  +D  E           +L + +    LGE RK+     
Sbjct: 4   GLEAQAVPYYEKAIA--SGLQGKDLAEC----------YLGLGSTFRTLGEYRKAEAVLA 51

Query: 472 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
             +   P H        M    LG +E+      
Sbjct: 52  NGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLL 85

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 16/90 (17%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G+     G++  A+A     ++ F    P               L +  A  L  LG   
Sbjct: 34  GSTFRTLGEYRKAEAVLANGVKQF----PNHQA-----------LRVFYAMVLYNLGRYE 78

Query: 465 KSIEACNKVLDANPAHVK-GLYRRGMAYMA 493
           + +E   K++           Y++ + + A
Sbjct: 79  QGVELLLKIIAETSDDETIQSYKQAILFYA 108

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 52.6 bits (126), Expect = 4e-08
 Identities = 16/136 (11%), Positives = 44/136 (32%), Gaps = 22/136 (16%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE-- 462
           G     +  +  +   Y + L+    +  ++ E           L+  +A  L       
Sbjct: 51  GEYYLWQNDYSNSLLAYRQALQ----LRGENAE-----------LYAALATVLYYQASQH 95

Query: 463 -CRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATA- 520
              ++    +K L  +   +  L            + +A   ++ +M ++          
Sbjct: 96  MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV 155

Query: 521 ---ALSKLKKQRQEVE 533
               ++KL ++R ++E
Sbjct: 156 ESINMAKLLQRRSDLE 171

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 40.2 bits (94), Expect = 7e-04
 Identities = 11/100 (11%), Positives = 30/100 (30%), Gaps = 9/100 (9%)

Query: 457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP 516
                     ++A    + ANP + +     G  Y+   ++  +   +   +++      
Sbjct: 20  FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR----G 75

Query: 517 DATAALSKL-----KKQRQEVESKARKQFKGLFDKKPGEI 551
           +     + L      +  Q + ++ R            EI
Sbjct: 76  ENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEI 115

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 54.3 bits (130), Expect = 1e-07
 Identities = 13/138 (9%), Positives = 29/138 (21%), Gaps = 19/138 (13%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           D+   I             +       +       + P                  +   
Sbjct: 258 DQVVAIASNIGGKQALETVQRLLPVLCQAHG----LTPDQVVA-----------IASHGG 302

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
               L   ++ +    +     P  V  +        AL   +           +     
Sbjct: 303 GKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLT---- 358

Query: 516 PDATAALSKLKKQRQEVE 533
           PD   A++     +Q +E
Sbjct: 359 PDQVVAIASNGGGKQALE 376

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.5 bits (128), Expect = 2e-07
 Identities = 11/138 (7%), Positives = 27/138 (19%), Gaps = 19/138 (13%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
            +   I             +       +         P                  +   
Sbjct: 597 VQVVAIASNIGGKQALETVQRLLPVLCQAHGL----TPAQVV-----------AIASHDG 641

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
               L   ++ +    +     P  V  +   G    AL   +           +     
Sbjct: 642 GKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT---- 697

Query: 516 PDATAALSKLKKQRQEVE 533
            +   A++     +Q +E
Sbjct: 698 QEQVVAIASNNGGKQALE 715

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.0 bits (124), Expect = 5e-07
 Identities = 12/138 (8%), Positives = 28/138 (20%), Gaps = 19/138 (13%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
            +   I             +       +       + P                  +   
Sbjct: 190 AQVVAIASNNGGKQALETVQRLLPVLCQAHG----LTPAQVVA-----------IASHDG 234

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
               L   ++ +    +     P  V  +        AL   +           +     
Sbjct: 235 GKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLT---- 290

Query: 516 PDATAALSKLKKQRQEVE 533
           PD   A++     +Q +E
Sbjct: 291 PDQVVAIASHGGGKQALE 308

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 51.6 bits (123), Expect = 8e-07
 Identities = 13/128 (10%), Positives = 27/128 (21%), Gaps = 19/128 (14%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           D+   I   G         +       +       + P                  +   
Sbjct: 292 DQVVAIASHGGGKQALETVQRLLPVLCQAHG----LTPDQVV-----------AIASHDG 336

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
               L   ++ +    +     P  V  +   G    AL   +           +     
Sbjct: 337 GKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT---- 392

Query: 516 PDATAALS 523
           PD   A++
Sbjct: 393 PDQVVAIA 400

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 51.2 bits (122), Expect = 1e-06
 Identities = 8/110 (7%), Positives = 19/110 (17%), Gaps = 15/110 (13%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           D+   I   G         +       +       + P                  +   
Sbjct: 529 DQVVAIASNGGGKQALETVQRLLPVLCQAHG----LTPDQVVA-----------IASNGG 573

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
               L   ++ +    +        V  +        AL   +       
Sbjct: 574 GKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLC 623

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.4 bits (120), Expect = 1e-06
 Identities = 11/138 (7%), Positives = 27/138 (19%), Gaps = 19/138 (13%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
            +   I             +       +       + P                  +   
Sbjct: 631 AQVVAIASHDGGKQALETVQRLLPVLCQAHG----LTPDQVVA-----------IASNGG 675

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
               L   ++ +    +        V  +        AL   +           +     
Sbjct: 676 GKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLT---- 731

Query: 516 PDATAALSKLKKQRQEVE 533
           PD   A++     +Q +E
Sbjct: 732 PDQVVAIASNGGGKQALE 749

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.4 bits (107), Expect = 6e-05
 Identities = 14/142 (9%), Positives = 32/142 (22%), Gaps = 19/142 (13%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           D+   I   G         +       +       +  +                 +   
Sbjct: 665 DQVVAIASNGGGKQALETVQRLLPVLCQAHG----LTQEQVVA-----------IASNNG 709

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
               L   ++ +    +     P  V  +   G    AL   +           +     
Sbjct: 710 GKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT---- 765

Query: 516 PDATAALSKLKKQRQEVESKAR 537
           P    A++     +Q +E+  R
Sbjct: 766 PAQVVAIASNIGGKQALETVQR 787

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 44.6 bits (105), Expect = 1e-04
 Identities = 11/130 (8%), Positives = 25/130 (19%), Gaps = 20/130 (15%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           D+   I   G         +       +       + P                  +   
Sbjct: 360 DQVVAIASNGGGKQALETVQRLLPVLCQAHG----LTPDQVV-----------AIASNGG 404

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
               L   ++ +    +     P  V  +        AL   +           +     
Sbjct: 405 -KQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLT---- 459

Query: 516 PDATAALSKL 525
           P    A++  
Sbjct: 460 PAQVVAIASH 469

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 42.7 bits (100), Expect = 4e-04
 Identities = 7/110 (6%), Positives = 17/110 (15%), Gaps = 15/110 (13%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
            +   I             +       +                            +   
Sbjct: 461 AQVVAIASHDGGKQALETVQQLLPVLCQAHG-LTPDQVV--------------AIASNIG 505

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
               L   ++ +    +     P  V  +   G    AL   +       
Sbjct: 506 GKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLC 555

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 53.1 bits (127), Expect = 2e-07
 Identities = 16/138 (11%), Positives = 34/138 (24%), Gaps = 23/138 (16%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLH-LNVAACLLKLGEC 463
           G   +K+G    A   +   L                      +L  L   +        
Sbjct: 144 GEVYWKKGDVTSAHTCFSGALTH----CKNKV----SLQNLSMVLRQLQTDSGDEHSRHV 195

Query: 464 RKSIEACNKVLDANPAHVKGLYRRGMAYMA--------LGEFEEAQRDFEMMMKVDKSSE 515
             S+      +  +    +  Y  G AY++            ++A   +    KVD+ + 
Sbjct: 196 MDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255

Query: 516 PDATA------ALSKLKK 527
            +              + 
Sbjct: 256 SNPDLHLNRATLHKYEES 273

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 50.0 bits (119), Expect = 2e-06
 Identities = 13/96 (13%), Positives = 28/96 (29%), Gaps = 16/96 (16%)

Query: 411 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE-CRKSIEA 469
           + + E    + E+VL         + +             +     L    +   ++   
Sbjct: 81  QEEMEKTLQQMEEVLGS----AQVEAQ-----------ALMLKGKALNVTPDYSPEAEVL 125

Query: 470 CNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
            +K +   P  V+   + G  Y   G+   A   F 
Sbjct: 126 LSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 42.7 bits (100), Expect = 3e-04
 Identities = 13/100 (13%), Positives = 27/100 (27%), Gaps = 12/100 (12%)

Query: 406 NRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRK 465
           N        + A + Y +  +  +     + +           LHLN A          +
Sbjct: 229 NTGQNPKISQQALSAYAQAEK-VDRKASSNPD-----------LHLNRATLHKYEESYGE 276

Query: 466 SIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
           ++E  ++    +PA  +   R       L           
Sbjct: 277 ALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Length = 224

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 13/109 (11%)

Query: 274 IRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGF 333
           +  GKGE P D       + V+YKG L++   K F D      G+PL F      V  G+
Sbjct: 128 VEAGKGEAPKD----SDTVVVNYKGTLID--GKEF-DNSYTR-GEPLSFRLDG--VIPGW 177

Query: 334 EMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFE 381
              ++ +  G    +  PP+ AY K       +P  + + +++ELL  +
Sbjct: 178 TEGLKNIKKGGKIKLVIPPELAYGK--AGVPGIPPNSTLVFDVELLDVK 224

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Length = 224

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 12/108 (11%)

Query: 35  VMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLE 94
           V+  G G++ P D D V  +     +DG   +++ +    +G P+   L    ++ G  E
Sbjct: 127 VVEAGKGEA-PKDSDTVVVNYKGTLIDGKEFDNSYT----RGEPLSFRLD--GVIPGWTE 179

Query: 95  GIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMID 142
           G+  + KG      + P++ YG+   P       P +  L F++E++D
Sbjct: 180 GLKNIKKGGKIKLVIPPELAYGKAGVP-----GIPPNSTLVFDVELLD 222

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 13/117 (11%), Positives = 33/117 (28%), Gaps = 20/117 (17%)

Query: 417 AKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 476
              + E +L         +             L   +     +  +   ++      LD 
Sbjct: 4   ITERLEAMLA----QGTDNML-----------LRFTLGKTYAEHEQFDAALPHLRAALDF 48

Query: 477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV-----DKSSEPDATAALSKLKKQ 528
           +P +       G      G+   A++ +E  +       D+    +    L +L ++
Sbjct: 49  DPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLARE 105

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 5e-07
 Identities = 72/466 (15%), Positives = 129/466 (27%), Gaps = 151/466 (32%)

Query: 253 ELVHLIQVRDMLGDGRLIKRRIRDGKGE-----FPMDCPLHD------SLLCVHYKGMLL 301
           E+ H+I  +D +     +   +   K E     F ++  L        S +    +   +
Sbjct: 50  EIDHIIMSKDAVSGTLRLFWTLLS-KQEEMVQKF-VEEVLRINYKFLMSPIKTEQRQPSM 107

Query: 302 NEEKKVFYDTRVDNDGQP-------------------LEFSSGEGLVPEG---------- 332
                +    R+ ND Q                    LE    + ++ +G          
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167

Query: 333 FEMC----VRLMLPGEI-----ALVTCPPD---------YAYDKFL-----RPANVPEGA 369
            ++C    V+  +  +I          P           Y  D          +N+    
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227

Query: 370 H-IQWEIELLGFEKP-----------KDWTGL-SFD------------GIMDEAEKIRVT 404
           H IQ E+  L   KP           ++     +F+             + D       T
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDD-EEGKVFVGKRNLLHLNVAACLLKLGEC 463
              L       L   + + +L  +    PQD   E        N   L++ A  ++ G  
Sbjct: 288 HISL-DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL----TTNPRRLSIIAESIRDGLA 342

Query: 464 R-------------KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510
                           IE+   VL+  PA  + ++        L  F        +   +
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLE--PAEYRKMFD------RLSVFPP---SAHIPTIL 391

Query: 511 DKSSEPDATAALSKL--KKQRQEVESKARK-QFKGLFDKKPGEISEVGIENQGEDQAAGK 567
                      LS +     + +V     K     L +K+P E S + I +   +    K
Sbjct: 392 -----------LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE-STISIPSIYLELKV-K 438

Query: 568 NENDDSEQESDGDEAQEFHEAAAEA---PRKGCSTAFGLPVED-YF 609
            EN+              H +  +    P+   S     P  D YF
Sbjct: 439 LENE-----------YALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 11/65 (16%), Positives = 27/65 (41%)

Query: 448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMM 507
                +A   LK     +++    ++++ +P +V   Y  G  Y  L   ++A   +   
Sbjct: 8   FTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67

Query: 508 MKVDK 512
           ++V +
Sbjct: 68  IEVAR 72

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 9/100 (9%), Positives = 25/100 (25%), Gaps = 17/100 (17%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
                K      A A +E+++      +P                + ++     +L    
Sbjct: 14  AQEHLKHDNASRALALFEELVE----TDPDYVG-----------TYYHLGKLYERLDRTD 58

Query: 465 KSIEACNKVLDANPAHVKGLYRRGM--AYMALGEFEEAQR 502
            +I+   + ++             +  A +     E    
Sbjct: 59  DAIDTYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHHH 98

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 16/78 (20%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLY-RRGMAYMALGEFEEAQRDFEMMM 508
            L     L+  G+   +++A  + L   P      Y   G AY  LG++++A  +++  +
Sbjct: 3   QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62

Query: 509 KVDKSSEPDATAALSKLK 526
           +++    PD+ A  ++  
Sbjct: 63  ELN----PDSPALQARKM 76

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 14/75 (18%)

Query: 404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC 463
           T   L  +G  E A    E+ L+      P   +E           +  +     KLG+ 
Sbjct: 6   TIKELINQGDIENALQALEEFLQ----TEPVGKDE----------AYYLMGNAYRKLGDW 51

Query: 464 RKSIEACNKVLDANP 478
           +K++      ++ NP
Sbjct: 52  QKALNNYQSAIELNP 66

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 48.8 bits (116), Expect = 3e-06
 Identities = 18/147 (12%), Positives = 42/147 (28%), Gaps = 14/147 (9%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE----GKVFVGKRNLLHLNVAACLLKL 460
                ++ + + A    +K L       P +       G  +  K   +       +   
Sbjct: 254 AKFYRRKDEPDKAIELLKKALE----YIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGK 309

Query: 461 GEC----RKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP 516
            +       ++    K  +AN    +        +    ++EEA+  F+     + +   
Sbjct: 310 RKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA 369

Query: 517 DATAALS--KLKKQRQEVESKARKQFK 541
                L     +  + + E KA   F 
Sbjct: 370 KQLLHLRYGNFQLYQMKCEDKAIHHFI 396

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 41.1 bits (96), Expect = 8e-04
 Identities = 22/140 (15%), Positives = 47/140 (33%), Gaps = 24/140 (17%)

Query: 409 FKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL---GECRK 465
               + E AK  +EK L       P++ E               +A    +L      + 
Sbjct: 149 CGGNQNERAKVCFEKALE----KKPKNPE-----------FTSGLAIASYRLDNWPPSQN 193

Query: 466 SIEACNKVLDANPAHVKGLYRRGMAYMAL----GEFEEAQRDFEMMMKVDKSSEPDATAA 521
           +I+   + +  NP +        +    +     E  E ++  E  ++       D   +
Sbjct: 194 AIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRS 252

Query: 522 LSKLKKQRQEVESKARKQFK 541
            +K  +++ E + KA +  K
Sbjct: 253 AAKFYRRKDEPD-KAIELLK 271

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 46.8 bits (111), Expect = 9e-06
 Identities = 29/206 (14%), Positives = 62/206 (30%), Gaps = 27/206 (13%)

Query: 393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLN 452
           G  D A        +L +      A   Y++    F      ++EE      +   L   
Sbjct: 110 GTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVF------ENEERLRQAAE---LIGK 160

Query: 453 VAACLLKLGECRKSIEACNKVLDAN------PAHVKGLYRRGMAYMALGEFEEAQRDFEM 506
            +  L++  +  ++  +  K           P   K    + +  +   ++  AQ+    
Sbjct: 161 ASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220

Query: 507 MMKVDKSSEPDATAALSKL----KKQRQEVESKARKQFKGLFDKKPGEISE------VGI 556
              +   S  +  AAL  L     +Q +E   +  +    L      + ++      V  
Sbjct: 221 SYSIPGFSGSEDCAALEDLLQAYDEQDEEQLLRVCRS--PLVTYMDNDYAKLAISLKVPG 278

Query: 557 ENQGEDQAAGKNENDDSEQESDGDEA 582
              G+ + +        E+E D    
Sbjct: 279 GGGGKKKPSASASAQPQEEEDDEYAG 304

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 16/125 (12%)

Query: 408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI 467
             K GK++ A     ++   F  + P                   +          + + 
Sbjct: 12  ALKNGKYDDA----SQLFLSFLELYPNGVYTPNA--------LYWLGESYYATRNFQLAE 59

Query: 468 EACNKVLDANPAHVK---GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
                ++   P H K   GL + G++    G+  EAQ+  + +      S+  A  A  +
Sbjct: 60  AQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDA-ARVAQER 118

Query: 525 LKKQR 529
           L+  R
Sbjct: 119 LQSIR 123

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 42.8 bits (102), Expect = 1e-05
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 15/91 (16%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           GN  +K+G ++ A   Y+K L     ++P + E              N+     K G+  
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALE----LDPNNAE-----------AWYNLGNAYYKQGDYD 60

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALG 495
           ++IE   K L+ +P + +     G A    G
Sbjct: 61  EAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 40.5 bits (96), Expect = 9e-05
 Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 10/74 (13%)

Query: 432 NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAY 491
           +P +  E             N+     K G+  ++IE   K L+ +P + +  Y  G AY
Sbjct: 4   DPGNSAEA----------WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 53

Query: 492 MALGEFEEAQRDFE 505
              G+++EA   ++
Sbjct: 54  YKQGDYDEAIEYYQ 67

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 25/200 (12%), Positives = 57/200 (28%), Gaps = 34/200 (17%)

Query: 412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN 471
           G        ++   +  +  +               L        L   G+CR  +    
Sbjct: 22  GSGGGGTNSHDGNSQQGSGSDGGSSM---------CLELALEGERLCNAGDCRAGVAFFQ 72

Query: 472 KVL----DANPAHVKGLYRRGMAYMALGEFEEA----QRDFEMMMKV-DKSSEPDATA-- 520
             +    +          + G AY  LG++ +A    + D  +   + D+  E  A +  
Sbjct: 73  AAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE--AKSSG 130

Query: 521 ----ALSKLKKQRQEVES--KARKQFKGLFDKKPGE---ISEVGI--ENQGEDQAAGKNE 569
                L  + +  +      +     + L D+   E   +  +G     +G+        
Sbjct: 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDR-LSEGRALYNLGNVYHAKGKHLGQRNPG 189

Query: 570 NDDSEQESDGDEAQEFHEAA 589
               + +     A EF++  
Sbjct: 190 KFGDDVKEALTRAVEFYQEN 209

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori} Length = 151

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 23/137 (16%)

Query: 294 VHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPD 353
           + Y+     +   +  D+ +    +PLEF  G   +  G E  V     GE   V   P+
Sbjct: 15  IEYEVRE--QGSSIVLDSNIS--KEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPE 70

Query: 354 YAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGK 413
            AY  +   + +        E+    FE  +   G+S  G  ++ + I+           
Sbjct: 71  EAYGVY-ESSYL-------QEVPRDQFEGIELEKGMSVFGQTEDNQTIQAI--------- 113

Query: 414 FELAKAKYEKVLRDFNH 430
             +       V+ D+NH
Sbjct: 114 --IKDFSATHVMVDYNH 128

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Length = 169

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 289 DSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALV 348
           +S + VH+   L  ++      TR  N+G+P  F  G+  + EG E  +  +  G+    
Sbjct: 28  NSAVLVHFTLKL--DDGTTAESTR--NNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTF 83

Query: 349 TCPPDYAY 356
           +  PD A+
Sbjct: 84  SLEPDAAF 91

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Length = 169

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 16/104 (15%)

Query: 46  SDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVS 105
                V  H T++  DG   ESTR+       P    LG + +  GL + +  +  G+ +
Sbjct: 26  QSNSAVLVHFTLKLDDGTTAESTRNNGK----PALFRLGDASLSEGLEQHLLGLKVGDKT 81

Query: 106 MFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKII 149
            F ++P   +G                +L       +F  A   
Sbjct: 82  TFSLEPDAAFGV------------PSPDLIQYFSRREFMDAGEP 113

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 18/116 (15%), Positives = 35/116 (30%), Gaps = 17/116 (14%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
               ++ + G RL K G      + +E  ++        +D +         +    +  
Sbjct: 7   ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-----TEDLK-----TLSAIYS-QLGN 55

Query: 456 CLLKLGECRKSIEACNKVLDA------NPAHVKGLYRRGMAYMALGEFEEAQRDFE 505
               L +  K++E  +  L             K     G     LG F+EA    +
Sbjct: 56  AYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQ 111

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1 Length = 151

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 9/77 (11%)

Query: 289 DSLLCVHYKGMLLN---------EEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRL 339
              + V Y G L +         E  K       D + +PLEF  GEG + +GFE  V  
Sbjct: 5   GVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLD 64

Query: 340 MLPGEIALVTCPPDYAY 356
           M  G+   V  P + AY
Sbjct: 65  MEVGDEKTVKIPAEKAY 81

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1 Length = 151

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 18/112 (16%), Positives = 40/112 (35%), Gaps = 21/112 (18%)

Query: 46  SDGDQVAYHCTVRTLDGVIVESTRSEYGGK---------GIPIRHVLGKSKILLGLLEGI 96
             G ++      +   G + +++  E   +           P+  V+G+ +++ G  E +
Sbjct: 3   DKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAV 62

Query: 97  PTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKI 148
             M  G+    K+  +  YG             ++E L  +I    F +A  
Sbjct: 63  LDMEVGDEKTVKIPAEKAYGN------------RNEMLIQKIPRDAFKEADF 102

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 15/89 (16%), Positives = 32/89 (35%)

Query: 451 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 510
           L   + LL+ GE  +++     + D   +       +    +   +FE AQ     +   
Sbjct: 10  LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE 69

Query: 511 DKSSEPDATAALSKLKKQRQEVESKARKQ 539
            + +   +  A  +L +Q  E     R +
Sbjct: 70  YQDNSYKSLIAKLELHQQAAESPELKRLE 98

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 40.0 bits (93), Expect = 7e-04
 Identities = 20/170 (11%), Positives = 52/170 (30%), Gaps = 40/170 (23%)

Query: 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC 456
             E++    + L ++G+   A    + +  +         +           + L  A C
Sbjct: 5   PDEQLLKQVSELLQQGEHAQALNVIQTLSDE----LQSRGD-----------VKLAKADC 49

Query: 457 LLKLGECRKSIEACNKVLDANPAHVKGL-YRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
           LL+  +     E   ++L   P   +   Y+  +A + L +      + + + +   ++ 
Sbjct: 50  LLETKQ----FELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANP 105

Query: 516 PDATAA--------------------LSKLKKQRQEVESKARKQFKGLFD 545
            +   A                     + LK      + + +K F  +  
Sbjct: 106 DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILS 155

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 22/139 (15%), Positives = 42/139 (30%), Gaps = 23/139 (16%)

Query: 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC 456
              ++ + G RL K G      + +E  ++                     +    +   
Sbjct: 4   SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLK----------TLSAIYS-QLGNA 52

Query: 457 LLKLGECRKSIEACNKVLDA------NPAHVKGLYRRGMAYMALGEFEEA----QRDFEM 506
              L +  K++E  +  L             K     G     LG F+EA    QR  ++
Sbjct: 53  YFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI 112

Query: 507 MMKVDKSSEPDATAALSKL 525
             +++   +     AL  L
Sbjct: 113 SRELND--KVGEARALYNL 129

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282

 Score = 41.6 bits (97), Expect = 4e-04
 Identities = 19/105 (18%), Positives = 30/105 (28%), Gaps = 7/105 (6%)

Query: 420 KYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLL-KLGECRKSIEACNKVLDANP 478
           ++  V+          D+    F+     +   VAA  L    E  + +   N       
Sbjct: 150 RWTDVIDQVKSAGKWPDK----FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEA 205

Query: 479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS 523
                 +   MA  + G    A    E +       EP   AAL 
Sbjct: 206 CARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAALK 248

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} Length = 171

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 289 DSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALV 348
           D ++ + Y+     E+  +  ++       PL++  G G +  G E  +     G+   V
Sbjct: 6   DLVVSLAYQVRT--EDGVLVDESP---VSAPLDYLHGHGSLISGLETALEGHEVGDKFDV 60

Query: 349 TCPPDYAY 356
               + AY
Sbjct: 61  AVGANDAY 68

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Length = 196

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 288 HDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIAL 347
            D ++ + Y+    +    +  ++       PL++  G G +  G E  +     G+   
Sbjct: 5   KDLVVSLAYQVRTEDGV--LVDESP---VSAPLDYLHGHGSLISGLETALEGHEVGDKFD 59

Query: 348 VTCPPDYAY 356
           V    + AY
Sbjct: 60  VAVGANDAY 68

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	626
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	100.0
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	100.0
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	100.0
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	100.0
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	100.0
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	100.0
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	100.0
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	100.0
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.92
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	99.89
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.89
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.88
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	99.88
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.88
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	99.88
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	99.87
2ppn_A	107	FK506-binding protein 1A; high resolution protein	99.87
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	99.86
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	99.86
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	99.86
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	99.86
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	99.86
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	99.86
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	99.86
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	99.86
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	99.85
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	99.85
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	99.85
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	99.85
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	99.85
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	99.85
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	99.85
2lkn_A	165	AH receptor-interacting protein; FKBP-type domain,	99.85
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.85
2lkn_A	165	AH receptor-interacting protein; FKBP-type domain,	99.84
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.84
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.83
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	99.83
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	99.83
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	99.83
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	99.82
2ppn_A	107	FK506-binding protein 1A; high resolution protein	99.82
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	99.82
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	99.81
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	99.8
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	99.8
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	99.8
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	99.79
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	99.79
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	99.79
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	99.79
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.78
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	99.78
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	99.78
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	99.78
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.77
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	99.77
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	99.76
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.75
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.75
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	99.74
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.68
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.64
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	99.6
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.59
3pr9_A	157	FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB	99.59
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.59
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	99.58
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	99.54
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.53
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.53
1hxv_A	113	Trigger factor; FKBP fold, ppiase, chaperone; NMR	99.53
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	99.53
3prb_A	231	FKBP-type peptidyl-prolyl CIS-trans isomerase; cha	99.53
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.52
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	99.52
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	99.51
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.5
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	99.5
1hxv_A	113	Trigger factor; FKBP fold, ppiase, chaperone; NMR	99.49
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	99.47
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	99.46
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.45
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.44
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.43
3pr9_A	157	FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB	99.42
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.42
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	99.42
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.42
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.41
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.41
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.4
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.4
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.39
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.38
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.38
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	99.36
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.35
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.34
3prb_A	231	FKBP-type peptidyl-prolyl CIS-trans isomerase; cha	99.34
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.34
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	99.34
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.32
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.31
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.29
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.29
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.28
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.28
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.28
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.27
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.26
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.25
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.21
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.21
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.2
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.18
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.18
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.17
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.17
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.14
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.14
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.13
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.12
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.11
1w26_A	432	Trigger factor, TF; chaperone, protein folding, ri	99.11
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.1
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.09
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.08
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.08
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.08
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.07
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.07
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.07
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.07
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.06
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.05
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.03
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.03
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.03
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.02
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.01
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.01
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.01
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.0
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.0
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.0
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.0
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.0
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.0
1w26_A	432	Trigger factor, TF; chaperone, protein folding, ri	99.0
1t11_A	392	Trigger factor, TF; helix-turn-helix, four-helix-b	98.99
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.98
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.98
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.98
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.98
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.98
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.97
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.96
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.96
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.95
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.95
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.94
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	98.94
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.94
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	98.94
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.94
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.94
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.93
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.93
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.93
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.92
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.92
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.91
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.91
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.9
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.9
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.9
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.9
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.9
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.89
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.89
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.88
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.88
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.86
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.86
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.85
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.84
1t11_A	392	Trigger factor, TF; helix-turn-helix, four-helix-b	98.82
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.81
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.81
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.8
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.8
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.8
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.78
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.78
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.78
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.78
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.74
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.74
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.73
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.73
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.73
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.72
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.72
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.71
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.71
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.71
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.7
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.69
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.68
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.67
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.66
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.66
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.66
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.66
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.64
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.64
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.64
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.64
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.63
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.63
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.6
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.59
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.59
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.58
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.56
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.55
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.55
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.55
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.52
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.52
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.52
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.51
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.5
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.5
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.49
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.49
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.47
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.45
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.44
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.44
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.42
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.42
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.41
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.4
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.39
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.38
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.38
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.36
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.35
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.34
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.33
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.32
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.3
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.3
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.29
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.27
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.25
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.2
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.18
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.17
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.13
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.12
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.1
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.09
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.0
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	97.92
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	97.9
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.85
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.82
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.78
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.76
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.74
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.74
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.72
3gty_X	433	Trigger factor, TF; chaperone-client complex, cell	97.67
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	97.64
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.64
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.63
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.62
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.54
3gty_X	433	Trigger factor, TF; chaperone-client complex, cell	97.53
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.51
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.5
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.45
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.45
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.4
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.3
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.12
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.1
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.85
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	96.82
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.54
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.29
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.23
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	96.16
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	95.94
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.89
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.86
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	94.56
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	94.38
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	93.91
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	93.82
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	93.7
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	93.29
3mkr_B	320	Coatomer subunit alpha; tetratricopeptide repeats	92.78
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	92.55
3mv2_A	325	Coatomer subunit alpha; vesicular membrane coat CO	92.17
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	91.62
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	90.65
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	88.7
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	88.13
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	87.5
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	86.92
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	85.4
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	85.19
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	84.29
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	81.16
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	80.52

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=100.00  E-value=1.6e-62  Score=516.89  Aligned_cols=343  Identities=32%  Similarity=0.531  Sum_probs=212.4

Q ss_pred             CceecCCceEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCCC
Q 006908           23 RMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKG  102 (626)
Q Consensus        23 ~~~~~~~gv~~~i~~~G~G~~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~G  102 (626)
                      .+.++++||+|+++++|+|..+|..||.|+|||++++.||++|+||+.    .+.|+.|.+|.+++++||+++|.+|++|
T Consensus         5 ~~~~~~~Gl~~~i~~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~----~~~p~~~~lG~g~~i~g~e~~l~gm~~G   80 (356)
T 3jxv_A            5 ENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRD----RDDTFKFKLGQGQVIKGWDQGIKTMKKG   80 (356)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cceECCCCeEEEEEEeecCCccCCCCCEEEEEEEEEECCCCEEEEccc----CCCcEEEEeCCCccchHHHHHHhcCCCC
Confidence            456899999999999999976699999999999999999999999986    6689999999999999999999999999


Q ss_pred             cEEEEEeeccccccCCCCCCCCCCCCCCCceEEEEEEeeeecccccccccccEEEEEeecCCCcCCCCCCCeEEEEEEEE
Q 006908          103 EVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAK  182 (626)
Q Consensus       103 e~~~~~ip~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~~~~~~v~~D~~v~~~i~~~G~g~~~~~~g~~V~v~y~~~  182 (626)
                      ++++|+|||+++||..+.+    +.|||+++|+|+|+|++|.+..++..|.++.++++++|.|+.+|..|+.|+|||+++
T Consensus        81 e~~~~~ip~~~aYG~~g~~----~~Ip~~~~l~f~vel~~~~~~~di~~D~~~~k~i~~~G~g~~~p~~g~~V~v~y~g~  156 (356)
T 3jxv_A           81 ENALFTIPPELAYGESGSP----PTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEAR  156 (356)
T ss_dssp             -----------------------------------------CCEEETTSSSSEEEEEEECCBSSCCCCTTCEEEEEEEEE
T ss_pred             CEEEEEEChHHhCCCCCCC----CCcCCCCEEEEEeeEEeeecccccccCceeEEEEEecCcccCCCCCCCEEEEEEEEE
Confidence            9999999999999999885    689999999999999999988889999999999999999999999999999999999


Q ss_pred             eCCCcEEEecCCCccEEEEcCCCCccchHHHhhccCCCCcEEEEEEeCCccCCCCCCC------CCCCcceEEEEEEEee
Q 006908          183 TGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMP------VVEGCEEVHFEVELVH  256 (626)
Q Consensus       183 ~~~g~~~~s~~~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~~~~~~g~~~~~------~ip~~~~l~~~v~l~~  256 (626)
                      +.||++|+++   .++.|.+|.+++|+||+.||.+|++||+++|+|||+++||+.+.+      .||++++|+|+|+|++
T Consensus       157 l~dgt~~~~~---~~~~f~~g~~~v~~gl~~~l~~m~~GE~~~~~v~p~~~yg~~G~~~~~~~~~ip~~~~l~~~vel~~  233 (356)
T 3jxv_A          157 LEDGTVVSKS---EGVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVS  233 (356)
T ss_dssp             ETTSCEEEEE---EEEEEEGGGCSSSHHHHHHHTTCCBTCEEEEEECGGGTTTTTCBCCCC--CCBCTTCCEEEEEEEEE
T ss_pred             ECCCCEEecc---CCEEEEeCCCCcchHHHHHHhhCCCCCEEEEEEChHhhcCCCCCCcccccccCCCCcEEEEEEEEEE
Confidence            9999999987   489999999999999999999999999999999999999976543      5999999999999999


Q ss_pred             EEeeeeecCCCcEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeeccCCCCCCEEEEcCCCcchhhHHHH
Q 006908          257 LIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMC  336 (626)
Q Consensus       257 ~~~~~d~~~dg~v~k~il~~G~G~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~dt~~~~~~~p~~f~lG~~~v~~gle~~  336 (626)
                      |.++.|++.|++++++++++|.|..   .|..|+.|+|||+|++.|  |++|+++... +++|+.|.+|.+++++||+.+
T Consensus       234 ~~~v~dv~~d~~~~~~i~~~g~g~~---~~~~gd~V~v~y~g~l~d--G~~fd~~~~~-~~~p~~f~~G~g~~i~G~e~~  307 (356)
T 3jxv_A          234 WKTVTEIGDDKKILKKVLKEXEGYE---RPNEGAVVTVKITGKLQD--GTVFLKKGHD-EQEPFEFKTDEEAVIEGLDRA  307 (356)
T ss_dssp             EECEEEESTTCCEEEEEEECCBSSC---CCCTTCEEEEEEEEEESS--SCEEEEESCT-TSCCCEEETTTTSSCHHHHHH
T ss_pred             EecccccccccceeEEeeecccccC---CCCCCCEEEEEEEEEECC--CCEEeecccc-CCcCEEEEECCCccchHHHHH
Confidence            9999999999999999999999953   368999999999999976  8999666444 578999999999999999999


Q ss_pred             hhcCCCCCEEEEEecCCCccccCCC--CCCCCCCcceeeeeeeccccc
Q 006908          337 VRLMLPGEIALVTCPPDYAYDKFLR--PANVPEGAHIQWEIELLGFEK  382 (626)
Q Consensus       337 l~~M~~GE~~~~~i~~~~ayg~~~~--~~~ip~~~~l~~~vel~~~~~  382 (626)
                      |.+|++||++.|+|||.+|||..+.  ...||++++++|+|+|++|..
T Consensus       308 l~gm~~Ge~~~v~ip~~~aYG~~~~~~~~~Ip~~~~l~f~vel~~~~~  355 (356)
T 3jxv_A          308 VLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSFVK  355 (356)
T ss_dssp             HTTCCBTCEEEEEECGGGTTTTSCEESSSEECTTCCEEEEEEEEEEEC
T ss_pred             HhCCCCCCEEEEEEChHHccCCCCcCCCCcCCcCCeEEEEEEEEEEEc
Confidence            9999999999999999999998873  356999999999999998864

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=100.00  E-value=1.1e-54  Score=474.94  Aligned_cols=388  Identities=29%  Similarity=0.480  Sum_probs=322.8

Q ss_pred             ccccEEEEEeecCCCcCCCCCCCeEEEEEEEEeCCCcEEEecC-CCccEEEEcCCCCccchHHHhhccCCCCcEEEEEEe
Q 006908          151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT  229 (626)
Q Consensus       151 ~D~~v~~~i~~~G~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~  229 (626)
                      .|+|+.++++++|.|...|..||.|+|||++++.+|++|+|+. .+.|+.|.+|.|++|+||+++|.+|++||+++|+||
T Consensus        29 ~~~g~~~~~~~~G~g~~~~~~gd~v~v~y~~~~~~g~~~dss~~~~~p~~~~~g~~~~i~g~~~~l~~m~~Ge~~~~~i~  108 (457)
T 1kt0_A           29 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICHLLCK  108 (457)
T ss_dssp             ----CEEEC--------CCCBTCEEEEEEEEEC-----CBC------CEEEETTSTTSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             CCCcEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCEEeccCCCCCCeEEEeCCcchhhHHHHHHhhCCCCCEEEEEEC
Confidence            6889999999999996669999999999999988999999885 568999999999999999999999999999999999


Q ss_pred             CCccCCCCC-CCCCCCcceEEEEEEEeeEEeeeeecCCCcEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEE
Q 006908          230 SQYLTPSPL-MPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVF  308 (626)
Q Consensus       230 ~~~~~g~~~-~~~ip~~~~l~~~v~l~~~~~~~d~~~dg~v~k~il~~G~G~~~~~~p~~~~~V~v~y~~~~~~~~g~~~  308 (626)
                      |+++||..+ ++.||++++++|+|+|++|... +++.||+++++++++|.|..   +|..|+.|+|||+|++ +  |.+|
T Consensus       109 ~~~~yg~~g~~~~i~~~~~l~~~v~l~~~~~~-~~~~dg~~~k~i~~~g~~~~---~p~~g~~V~v~y~g~~-~--g~~f  181 (457)
T 1kt0_A          109 PEYAYGSAGSLPKIPSNATLFFEIELLDFKGE-DLFEDGGIIRRTKRKGEGYS---NPNEGATVEIHLEGRC-G--GRMF  181 (457)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEECE-ETTSSSSEEEEEEECCBCSC---CCCTTCEEEEEEEEEE-T--TEEE
T ss_pred             hHHhccccCCCCCCCCCCcEEEEEeeceeecc-cccCCcceEEEEEecCCCCC---CCCCCCEEEEEEEEEe-C--CeEE
Confidence            999999764 3679999999999999999764 78899999999999998863   4789999999999998 4  7777


Q ss_pred             EeeccCCCCCCEEEEcCCCc---chhhHHHHhhcCCCCCEEEEEecCCCccccCCCCC-CCCCCcceeeeeeecccccCC
Q 006908          309 YDTRVDNDGQPLEFSSGEGL---VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEKPK  384 (626)
Q Consensus       309 ~dt~~~~~~~p~~f~lG~~~---v~~gle~~l~~M~~GE~~~~~i~~~~ayg~~~~~~-~ip~~~~l~~~vel~~~~~~~  384 (626)
                       ++      +++.|.+|+|.   ++++|+.|+..|+.||++.|.++|.++|+..|.+. .||+++.+.|.+.|.++....
T Consensus       182 -~~------~~~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~i~P~~ay~~~g~~~~~ip~~~~l~y~~~l~~~~~A~  254 (457)
T 1kt0_A          182 -DC------RDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAK  254 (457)
T ss_dssp             -EE------EEEEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCBGGGTBCTTCCEEEEEEEEEEECCC
T ss_pred             -ec------CceEEEeCCCccccCChHHHHHHHhCCCCCEEEEEECcccccCCCCCcccCCCCCCEEEEEhhhhhcccCc
Confidence             44      25899999774   89999999999999999999999999999998654 599999999999999999988


Q ss_pred             CCCCCChhhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHH
Q 006908          385 DWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR  464 (626)
Q Consensus       385 ~~~~~~~~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~  464 (626)
                      ..+.+..+.....+..++.+|+.+|+.|+|.+|+..|++|+.+.+......+++......+...+|+|+|.||+++++|.
T Consensus       255 ~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~  334 (457)
T 1kt0_A          255 ESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYT  334 (457)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             chhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            88888999999999999999999999999999999999999965543333345556677778899999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 006908          465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLF  544 (626)
Q Consensus       465 ~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  544 (626)
                      +|+.+|.+||+++|+++++||++|.+|..+|+|++|+.+|++|++++|++ ..+...|..+...+.+..++++..|++||
T Consensus       335 ~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~-~~a~~~l~~~~~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          335 KAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN-KAARLQISMCQKKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999997 68999999999999999999999999999


Q ss_pred             cCCCCCccc
Q 006908          545 DKKPGEISE  553 (626)
Q Consensus       545 ~~~~~~~~~  553 (626)
                      .+.......
T Consensus       414 ~k~~~~d~~  422 (457)
T 1kt0_A          414 KKFAEQDAK  422 (457)
T ss_dssp             ---------
T ss_pred             hhhhhcccc
Confidence            887655443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=100.00  E-value=2.1e-42  Score=377.81  Aligned_cols=378  Identities=21%  Similarity=0.319  Sum_probs=271.2

Q ss_pred             cCcee--cCCceEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCC
Q 006908           22 RRMKI--VPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTM   99 (626)
Q Consensus        22 ~~~~~--~~~gv~~~i~~~G~G~~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m   99 (626)
                      ..+++  +++||.|+|+++|+|..+|..||.|+|||++++.||++|+||+.    .+.|+.|.+|.+++++||+++|.+|
T Consensus        22 ~~~~~~~~~~g~~~~~~~~G~g~~~~~~gd~v~v~y~~~~~~g~~~dss~~----~~~p~~~~~g~~~~i~g~~~~l~~m   97 (457)
T 1kt0_A           22 GEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHD----RNEPFVFSLGKGQVIKAWDIGVATM   97 (457)
T ss_dssp             -----------CEEEC--------CCCBTCEEEEEEEEEC-----CBC----------CEEEETTSTTSCHHHHHHHTTC
T ss_pred             cccccCCCCCcEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCEEeccCC----CCCCeEEEeCCcchhhHHHHHHhhC
Confidence            34566  89999999999999987799999999999999889999999986    6789999999999999999999999


Q ss_pred             CCCcEEEEEeeccccccCCCCCCCCCCCCCCCceEEEEEEeeeecccccccccccEEEEEeecCCCcCCCCCCCeEEEEE
Q 006908          100 LKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWI  179 (626)
Q Consensus       100 ~~Ge~~~~~ip~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~~~~~~v~~D~~v~~~i~~~G~g~~~~~~g~~V~v~y  179 (626)
                      ++|++++|+|||+++||..|++    +.||++++++|+|+|++|... ++..|.+++++++++|.|+..|..|+.|+|||
T Consensus        98 ~~Ge~~~~~i~~~~~yg~~g~~----~~i~~~~~l~~~v~l~~~~~~-~~~~dg~~~k~i~~~g~~~~~p~~g~~V~v~y  172 (457)
T 1kt0_A           98 KRGEICHLLCKPEYAYGSAGSL----PKIPSNATLFFEIELLDFKGE-DLFEDGGIIRRTKRKGEGYSNPNEGATVEIHL  172 (457)
T ss_dssp             CTTCEEEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEECE-ETTSSSSEEEEEEECCBCSCCCCTTCEEEEEE
T ss_pred             CCCCEEEEEEChHHhccccCCC----CCCCCCCcEEEEEeeceeecc-cccCCcceEEEEEecCCCCCCCCCCCEEEEEE
Confidence            9999999999999999998875    789999999999999999754 45678899999999999999999999999999


Q ss_pred             EEEeCCCcEEEecCCCccEEEEcCCC---CccchHHHhhccCCCCcEEEEEEeCCccCCCCCCC--CCCCcceEEEEEEE
Q 006908          180 SAKTGDGKLILSHREGEPYFFTFGKS---EVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMP--VVEGCEEVHFEVEL  254 (626)
Q Consensus       180 ~~~~~~g~~~~s~~~~~p~~~~~g~g---~~~~gle~~l~~mk~Ge~~~~~v~~~~~~g~~~~~--~ip~~~~l~~~v~l  254 (626)
                      ++++ +|++|++.    ++.|.+|.|   .++++|+.||..|++|+.+.|.++|.++|+..+..  .||++..+.|.+.+
T Consensus       173 ~g~~-~g~~f~~~----~~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~i~P~~ay~~~g~~~~~ip~~~~l~y~~~l  247 (457)
T 1kt0_A          173 EGRC-GGRMFDCR----DVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTL  247 (457)
T ss_dssp             EEEE-TTEEEEEE----EEEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCBGGGTBCTTCCEEEEEEE
T ss_pred             EEEe-CCeEEecC----ceEEEeCCCccccCChHHHHHHHhCCCCCEEEEEECcccccCCCCCcccCCCCCCEEEEEhhh
Confidence            9988 89999973    699999977   48999999999999999999999999999987653  58899999999999


Q ss_pred             eeEEeeeeecCCCcEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeeccCCCCCCEEEEcCC-CcchhhH
Q 006908          255 VHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGE-GLVPEGF  333 (626)
Q Consensus       255 ~~~~~~~d~~~dg~v~k~il~~G~G~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~dt~~~~~~~p~~f~lG~-~~v~~gl  333 (626)
                      .++.+..+.+.-.      +.    ..    |.   ....      ...-|...             |..|+ ..-+..+
T Consensus       248 ~~~~~A~~~~~~~------~~----~~----~~---~a~~------~~~~G~~~-------------~~~g~~~~A~~~y  291 (457)
T 1kt0_A          248 KSFEKAKESWEMD------TK----EK----LE---QAAI------VKEKGTVY-------------FKGGKYMQAVIQY  291 (457)
T ss_dssp             EEEECCCCGGGSC------HH----HH----HH---HHHH------HHHHHHHH-------------HHTTCHHHHHHHH
T ss_pred             hhcccCcchhhcC------HH----HH----HH---HHHH------HHHHHHHH-------------HhCCCHHHHHHHH
Confidence            9986543221000      00    00    00   0000      00000000             01111 0122233


Q ss_pred             HHHhhcCCCCCEEEEEecCCCccccCCCCCCCCCCcceeeeeeecccccCCCCCCCChhhHHHHHHHHHhhhchhhcccc
Q 006908          334 EMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGK  413 (626)
Q Consensus       334 e~~l~~M~~GE~~~~~i~~~~ayg~~~~~~~ip~~~~l~~~vel~~~~~~~~~~~~~~~e~~~~a~~~k~~Gn~~f~~g~  413 (626)
                      +.++....           ..              ..+  .            .....+.....+..+.++|..+++.|+
T Consensus       292 ~~Al~~~p-----------~~--------------~~~--~------------~~~~~~~~~~~~~~~~nla~~~~~~g~  332 (457)
T 1kt0_A          292 GKIVSWLE-----------ME--------------YGL--S------------EKESKASESFLLAAFLNLAMCYLKLRE  332 (457)
T ss_dssp             HHHHHHHT-----------TC--------------CSC--C------------HHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhc-----------cc--------------ccC--C------------hHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            33332110           00              000  0            000001112246788899999999999


Q ss_pred             HHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 006908          414 FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA  493 (626)
Q Consensus       414 ~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~  493 (626)
                      |++|+..|++||.    +.|.+           ..+|+|+|.||+++++|.+|+.+|.+||+++|++..+++.++.++..
T Consensus       333 ~~~A~~~~~~al~----~~p~~-----------~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~  397 (457)
T 1kt0_A          333 YTKAVECCDKALG----LDSAN-----------EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKK  397 (457)
T ss_dssp             HHHHHHHHHHHHH----HSTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh----cCCcc-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999999999999    56665           56899999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHH
Q 006908          494 LGEFEEAQRD  503 (626)
Q Consensus       494 lg~~~eA~~~  503 (626)
                      ++++++|.+.
T Consensus       398 ~~~~~~a~~~  407 (457)
T 1kt0_A          398 AKEHNERDRR  407 (457)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988754

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=100.00  E-value=4.7e-40  Score=332.45  Aligned_cols=228  Identities=25%  Similarity=0.418  Sum_probs=208.2

Q ss_pred             cCcee--cCCceEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCC
Q 006908           22 RRMKI--VPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTM   99 (626)
Q Consensus        22 ~~~~~--~~~gv~~~i~~~G~G~~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m   99 (626)
                      +.+++  +++||+|+++++|+|..+|..||.|+|||++++.||++|++|+.    .+.|+.|.+|.+++++||+++|.+|
T Consensus        42 ~~di~~~~~~gl~~~vl~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~----~~~p~~f~lG~g~vi~G~e~aL~gm  117 (280)
T 1q1c_A           42 GVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLD----RKDKFSFDLGKGEVIKAWDIAIATM  117 (280)
T ss_dssp             CEECCSSCSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTT----SSSCEEEETTTTSSCHHHHHHHTTC
T ss_pred             ccccccCCCCceEEEEEeCCCCCcCCCCCCEEEEEEEEEECCCCEEEeccc----CCCCEEEEECCcChhHHHHHHHhcC
Confidence            44666  79999999999999987799999999999999889999999986    5689999999999999999999999


Q ss_pred             CCCcEEEEEeeccccccCCCCCCCCCCCCCCCceEEEEEEeeeeccccccc--ccccEEEEEeecCCCcCCCCCCCeEEE
Q 006908          100 LKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIA--DDFGVVKKVINEGQGWETPRAPYEVKA  177 (626)
Q Consensus       100 ~~Ge~~~~~ip~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~~~~~~v~--~D~~v~~~i~~~G~g~~~~~~g~~V~v  177 (626)
                      ++|++++|+|||+++||..+.+    +.||++++++|+|+|+++... ++.  .|.++.++++++|.|+..|+.||.|+|
T Consensus       118 ~~Ge~~~v~ipp~~aYG~~g~~----~~Ip~~~~lvf~Vel~~i~~~-~~~~~~d~gl~~~il~~G~G~~~~~~gd~V~i  192 (280)
T 1q1c_A          118 KVGEVCHITCKPEYAYGSAGSP----PKIPPNATLVFEVELFEFKGE-DLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEV  192 (280)
T ss_dssp             CTTCEEEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEECE-ECCTTCSSSEEEEEEECCSCSCCCCTTCEEEE
T ss_pred             CCCCEEEEEECcHHhCCCcCcc----CCCCCCCcEEEEEEeeeeccc-ccccccccceeEEeeecccccccccCCceEEE
Confidence            9999999999999999998875    789999999999999999754 344  788999999999999778999999999


Q ss_pred             EEEEEeCCCcEEEecCCCccEEEEcCCCC---ccchHHHhhccCCCCcEEEEEEeCCccCCCCCCC--CCCCcceEEEEE
Q 006908          178 WISAKTGDGKLILSHREGEPYFFTFGKSE---VPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMP--VVEGCEEVHFEV  252 (626)
Q Consensus       178 ~y~~~~~~g~~~~s~~~~~p~~~~~g~g~---~~~gle~~l~~mk~Ge~~~~~v~~~~~~g~~~~~--~ip~~~~l~~~v  252 (626)
                      ||+++. +|++|++    .|+.|.+|.|+   +|+||+++|.+|++||+++|.|||+++||..+.+  .||++++++|+|
T Consensus       193 ~y~g~~-dG~~fd~----~~~~f~lG~g~~~~~i~G~e~~l~gmk~Ge~~~v~ip~~~~yG~~~~~~~~IP~~~~l~f~V  267 (280)
T 1q1c_A          193 ALEGYY-KDKLFDQ----RELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYEL  267 (280)
T ss_dssp             EEEEEE-TTEEEEE----EEEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBGGGTBCTTCCEEEEE
T ss_pred             EEEEEe-CCEEEec----CCeEEEecCCcccccchhHHHHHhCCCCCcEEEEEEChhHcCCcCCCccCccCCCCeEEEEE
Confidence            999987 9999997    48999999997   5999999999999999999999999999987643  499999999999


Q ss_pred             EEeeEEeeeee
Q 006908          253 ELVHLIQVRDM  263 (626)
Q Consensus       253 ~l~~~~~~~d~  263 (626)
                      +|+++.+.+|.
T Consensus       268 ~L~~i~~~~~~  278 (280)
T 1q1c_A          268 HLKSFEKAKES  278 (280)
T ss_dssp             EEEEEECCCC-
T ss_pred             EEEEEeCCCCC
Confidence            99999877654

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=100.00  E-value=4.7e-38  Score=330.50  Aligned_cols=227  Identities=27%  Similarity=0.452  Sum_probs=210.0

Q ss_pred             ceecCCceEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCCCc
Q 006908           24 MKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGE  103 (626)
Q Consensus        24 ~~~~~~gv~~~i~~~G~G~~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge  103 (626)
                      ++..+.++.++++++|.|..+|..||.|.|||++++.||++|+++.        ++.|.+|.+++++||+.+|.+|++||
T Consensus       122 di~~D~~~~k~i~~~G~g~~~p~~g~~V~v~y~g~l~dgt~~~~~~--------~~~f~~g~~~v~~gl~~~l~~m~~GE  193 (356)
T 3jxv_A          122 DIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSE--------GVEFTVKDGHLCPALAKAVKTMKKGE  193 (356)
T ss_dssp             ETTSSSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEEE--------EEEEEGGGCSSSHHHHHHHTTCCBTC
T ss_pred             ccccCceeEEEEEecCcccCCCCCCCEEEEEEEEEECCCCEEeccC--------CEEEEeCCCCcchHHHHHHhhCCCCC
Confidence            4567899999999999998889999999999999999999999774        68999999999999999999999999


Q ss_pred             EEEEEeeccccccCCCCCCCCC-CCCCCCceEEEEEEeeeecccccccccccEEEEEeecCCCcCCCCCCCeEEEEEEEE
Q 006908          104 VSMFKMKPQMHYGEDDCPVAAP-STFPKDEELHFEIEMIDFAKAKIIADDFGVVKKVINEGQGWETPRAPYEVKAWISAK  182 (626)
Q Consensus       104 ~~~~~ip~~~~~g~~~~~~~~~-~~i~~~~~lv~~v~l~~~~~~~~v~~D~~v~~~i~~~G~g~~~~~~g~~V~v~y~~~  182 (626)
                      ++.|+|||+++||..|++...+ ..||++++|+|+|+|++|....++..|.+++++++++|.|+..|+.||.|+|||+++
T Consensus       194 ~~~~~v~p~~~yg~~G~~~~~~~~~ip~~~~l~~~vel~~~~~v~dv~~d~~~~~~i~~~g~g~~~~~~gd~V~v~y~g~  273 (356)
T 3jxv_A          194 KVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEGYERPNEGAVVTVKITGK  273 (356)
T ss_dssp             EEEEEECGGGTTTTTCBCCCC--CCBCTTCCEEEEEEEEEEECEEEESTTCCEEEEEEECCBSSCCCCTTCEEEEEEEEE
T ss_pred             EEEEEEChHhhcCCCCCCcccccccCCCCcEEEEEEEEEEEecccccccccceeEEeeecccccCCCCCCCEEEEEEEEE
Confidence            9999999999999998863221 369999999999999999988888899999999999999999999999999999999


Q ss_pred             eCCCcEEEecC--CCccEEEEcCCCCccchHHHhhccCCCCcEEEEEEeCCccCCCCCC---CCCCCcceEEEEEEEeeE
Q 006908          183 TGDGKLILSHR--EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLM---PVVEGCEEVHFEVELVHL  257 (626)
Q Consensus       183 ~~~g~~~~s~~--~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~~~~~~g~~~~---~~ip~~~~l~~~v~l~~~  257 (626)
                      +.||++|+++.  ++.|+.|.+|.|++|+||+++|.+|++||+++|+|||+++||..+.   ..||++++|+|+|+|++|
T Consensus       274 l~dG~~fd~~~~~~~~p~~f~~G~g~~i~G~e~~l~gm~~Ge~~~v~ip~~~aYG~~~~~~~~~Ip~~~~l~f~vel~~~  353 (356)
T 3jxv_A          274 LQDGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSF  353 (356)
T ss_dssp             ESSSCEEEEESCTTSCCCEEETTTTSSCHHHHHHHTTCCBTCEEEEEECGGGTTTTSCEESSSEECTTCCEEEEEEEEEE
T ss_pred             ECCCCEEeeccccCCcCEEEEECCCccchHHHHHHhCCCCCCEEEEEEChHHccCCCCcCCCCcCCcCCeEEEEEEEEEE
Confidence            99999999873  5799999999999999999999999999999999999999997643   568999999999999998


Q ss_pred             E
Q 006908          258 I  258 (626)
Q Consensus       258 ~  258 (626)
                      .
T Consensus       354 ~  354 (356)
T 3jxv_A          354 V  354 (356)
T ss_dssp             E
T ss_pred             E
Confidence            5

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=100.00  E-value=2.3e-37  Score=312.81  Aligned_cols=223  Identities=30%  Similarity=0.436  Sum_probs=201.4

Q ss_pred             ccccEEEEEeecCCCcCCCCCCCeEEEEEEEEeCCCcEEEecC-CCccEEEEcCCCCccchHHHhhccCCCCcEEEEEEe
Q 006908          151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT  229 (626)
Q Consensus       151 ~D~~v~~~i~~~G~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~  229 (626)
                      .++++.++++++|.|...|+.||.|+|||++++.||++|+++. ++.|+.|.+|.+++++||++||.+|++|++++|+||
T Consensus        49 ~~~gl~~~vl~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~v~ip  128 (280)
T 1q1c_A           49 QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCK  128 (280)
T ss_dssp             CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTTSSSCEEEETTTTSSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             CCCceEEEEEeCCCCCcCCCCCCEEEEEEEEEECCCCEEEecccCCCCEEEEECCcChhHHHHHHHhcCCCCCEEEEEEC
Confidence            6889999999999997669999999999999999999999886 468999999999999999999999999999999999


Q ss_pred             CCccCCCCC-CCCCCCcceEEEEEEEeeEEeeeeec--CCCcEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCc
Q 006908          230 SQYLTPSPL-MPVVEGCEEVHFEVELVHLIQVRDML--GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKK  306 (626)
Q Consensus       230 ~~~~~g~~~-~~~ip~~~~l~~~v~l~~~~~~~d~~--~dg~v~k~il~~G~G~~~~~~p~~~~~V~v~y~~~~~~~~g~  306 (626)
                      |+++||..+ ++.||++++|+|+|+|+++.. .++.  .|++++++++++|.|..+   |..|+.|+|||++++ +  |+
T Consensus       129 p~~aYG~~g~~~~Ip~~~~lvf~Vel~~i~~-~~~~~~~d~gl~~~il~~G~G~~~---~~~gd~V~i~y~g~~-d--G~  201 (280)
T 1q1c_A          129 PEYAYGSAGSPPKIPPNATLVFEVELFEFKG-EDLTEEEDGGIIRRIQTRGEGYAK---PNEGAIVEVALEGYY-K--DK  201 (280)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC-EECCTTCSSSEEEEEEECCSCSCC---CCTTCEEEEEEEEEE-T--TE
T ss_pred             cHHhCCCcCccCCCCCCCcEEEEEEeeeecc-cccccccccceeEEeeeccccccc---ccCCceEEEEEEEEe-C--CE
Confidence            999999754 467999999999999999976 4777  889999999999999742   678999999999997 4  88


Q ss_pred             EEEeeccCCCCCCEEEEcCCCc---chhhHHHHhhcCCCCCEEEEEecCCCccccCCCCC-CCCCCcceeeeeeeccccc
Q 006908          307 VFYDTRVDNDGQPLEFSSGEGL---VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEK  382 (626)
Q Consensus       307 ~~~dt~~~~~~~p~~f~lG~~~---v~~gle~~l~~M~~GE~~~~~i~~~~ayg~~~~~~-~ip~~~~l~~~vel~~~~~  382 (626)
                      +|+ +      +|+.|.+|.+.   +++||+.+|.+|++||++.|+|||+|+||..+.+. .||++++++|+|+|++|..
T Consensus       202 ~fd-~------~~~~f~lG~g~~~~~i~G~e~~l~gmk~Ge~~~v~ip~~~~yG~~~~~~~~IP~~~~l~f~V~L~~i~~  274 (280)
T 1q1c_A          202 LFD-Q------RELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEK  274 (280)
T ss_dssp             EEE-E------EEEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEEEC
T ss_pred             EEe-c------CCeEEEecCCcccccchhHHHHHhCCCCCcEEEEEEChhHcCCcCCCccCccCCCCeEEEEEEEEEEeC
Confidence            884 3      37999999998   59999999999999999999999999999988665 5999999999999999998


Q ss_pred             CCCCC
Q 006908          383 PKDWT  387 (626)
Q Consensus       383 ~~~~~  387 (626)
                      +++.|
T Consensus       275 ~~~~W  279 (280)
T 1q1c_A          275 AKESW  279 (280)
T ss_dssp             CCC--
T ss_pred             CCCCC
Confidence            87654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=100.00  E-value=9.3e-38  Score=327.56  Aligned_cols=277  Identities=30%  Similarity=0.466  Sum_probs=205.5

Q ss_pred             CCcEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeeccCCCCCCEEEEcCCC-cchhhHHHHhhcCCCCC
Q 006908          266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEG-LVPEGFEMCVRLMLPGE  344 (626)
Q Consensus       266 dg~v~k~il~~G~G~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~dt~~~~~~~p~~f~lG~~-~v~~gle~~l~~M~~GE  344 (626)
                      +++|.++++++|.|..    |..|+.|+|||+|++.+ +|++|++|. . +++|+.|.+|.+ .+++||+.+|.+|++||
T Consensus        48 ~~~~~~~~~~~g~g~~----~~~gd~v~v~y~g~~~~-~g~~fd~~~-~-~~~~~~~~lg~~~~~i~g~e~~l~~m~~Ge  120 (338)
T 2if4_A           48 DEKVSKQIIKEGHGSK----PSKYSTCFLHYRAWTKN-SQHKFEDTW-H-EQQPIELVLGKEKKELAGLAIGVASMKSGE  120 (338)
T ss_dssp             ETTEEEEEEECCBSCC----CCTTCEEEEEEEEEETT-TCCCCEEHH-H-HTCCEEEETTSCCGGGHHHHHHHHHCCBTC
T ss_pred             CCCeEEEEEeCCCCCC----CCCCCEEEEEEEEEEcC-CCcEeeccc-C-CCCCeEEEcCCCCcccHHHHHHHhcCCCCC
Confidence            4679999999999975    57899999999999875 488885543 3 468999999999 89999999999999999


Q ss_pred             EEEEEecCCCccccCCC--CCCCCCCcceeeeeeecccccCCC---CCCCChhhHHHHHHHHHhhhchhhccccHHHHHH
Q 006908          345 IALVTCPPDYAYDKFLR--PANVPEGAHIQWEIELLGFEKPKD---WTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKA  419 (626)
Q Consensus       345 ~~~~~i~~~~ayg~~~~--~~~ip~~~~l~~~vel~~~~~~~~---~~~~~~~e~~~~a~~~k~~Gn~~f~~g~~~~A~~  419 (626)
                      ++.|+||+.++||..+.  .+.||+++++.|.|+|+++.....   .+.++.++++..+..++..|+.+|+.|+|.+|+.
T Consensus       121 ~~~~~i~~~~~yg~~~~~~~~~ip~~~~l~f~v~L~~~~~~~e~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~  200 (338)
T 2if4_A          121 RALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQ  200 (338)
T ss_dssp             EEEEEECGGGSSCSSCCCSSSCCCTTCCEEEEEEEEEEECCCCCBTTTBCCHHHHHHHHHHHHHHHHHTCSSSCCHHHHH
T ss_pred             eEEEEECHHHhcCCCCCCCCCCCCCCCcEEEEEEEEEecCCccccccccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            99999999999999987  367999999999999999877543   5678899999999999999999999999999999


Q ss_pred             HHHHHHHhcccCC--CCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 006908          420 KYEKVLRDFNHVN--PQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF  497 (626)
Q Consensus       420 ~y~~al~~l~~~~--p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~  497 (626)
                      +|++|+...+...  .......+....+...+|+|+|.||+++++|.+|+.+|.++|+++|+++++||++|.+|..+|+|
T Consensus       201 ~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~  280 (338)
T 2if4_A          201 QYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQM  280 (338)
T ss_dssp             HHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred             HHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence            9999998432210  00011122233445569999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCC
Q 006908          498 EEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGE  550 (626)
Q Consensus       498 ~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~  550 (626)
                      ++|+.+|++|++++|++ ..++..|..+....+...++.+..|++||...+..
T Consensus       281 ~~A~~~l~~al~l~p~~-~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~  332 (338)
T 2if4_A          281 DSARDDFRKAQKYAPDD-KAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEG  332 (338)
T ss_dssp             HHHHHHHHHTTC-----------------------------------------
T ss_pred             HHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence            99999999999999997 78999999998888888888889999999876544

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=100.00  E-value=2.4e-34  Score=301.39  Aligned_cols=276  Identities=29%  Similarity=0.485  Sum_probs=244.7

Q ss_pred             eeeecCCCcEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeeccCCCCCCEEEEcCCCc---chhhHHHH
Q 006908          260 VRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL---VPEGFEMC  336 (626)
Q Consensus       260 ~~d~~~dg~v~k~il~~G~G~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~dt~~~~~~~p~~f~lG~~~---v~~gle~~  336 (626)
                      +.+++.|++|+|+|+++|.|..   +|..|++|+|||+|++ +  |++|+ ++      |+.|.+|.|.   ++++|+.|
T Consensus        18 ~~~~~~~~~~~~~~~~~g~g~~---~p~~~~~v~v~y~g~~-~--g~~fd-~~------~~~f~lG~g~~~~~~~~~e~a   84 (336)
T 1p5q_A           18 GSHMEEDGGIIRRIQTRGEGYA---KPNEGAIVEVALEGYY-K--DKLFD-QR------ELRFEIGEGENLDLPYGLERA   84 (336)
T ss_dssp             ----CCTTSEEEEEEECCCCSC---CCCTTCEEEEEEEEEE-T--TEEEE-EE------EEEEETTCGGGGTCCHHHHHH
T ss_pred             ceeecCCCcEEEEEEeCCCCCC---CCCCCCeEEEEEEEEE-C--CEEEe-cC------CeEEEeCCCCccccchHHHHH
Confidence            3577899999999999999973   3688999999999998 4  88884 32      7999999987   58999999


Q ss_pred             hhcCCCCCEEEEEecCCCccccCCCCC-CCCCCcceeeeeeecccccCCCCCCCChhhHHHHHHHHHhhhchhhccccHH
Q 006908          337 VRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFE  415 (626)
Q Consensus       337 l~~M~~GE~~~~~i~~~~ayg~~~~~~-~ip~~~~l~~~vel~~~~~~~~~~~~~~~e~~~~a~~~k~~Gn~~f~~g~~~  415 (626)
                      |..|++||++.|.|+|+++||..|.+. .||+++.+.|++.|.++......+.+..+.....+..+...|+.+++.|+|+
T Consensus        85 l~~~~~Ge~~~l~i~p~~ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~  164 (336)
T 1p5q_A           85 IQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYK  164 (336)
T ss_dssp             HTTCCTTCEEEEEECTTTTTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HhcCCCCCeEEEEECCccccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence            999999999999999999999999766 5999999999999999999888888888888899999999999999999999


Q ss_pred             HHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 006908          416 LAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG  495 (626)
Q Consensus       416 ~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg  495 (626)
                      +|+..|++|+...+.......+.......+...+|+|+|.||+++++|.+|+.+|.+||+++|+++++|+++|.+|..+|
T Consensus       165 ~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  244 (336)
T 1p5q_A          165 QALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVN  244 (336)
T ss_dssp             HHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence            99999999999654332223344555667778999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCC
Q 006908          496 EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPG  549 (626)
Q Consensus       496 ~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~  549 (626)
                      ++++|+.+|++|++++|++ ..+...|..+...+.+..++++..|++||.+...
T Consensus       245 ~~~~A~~~~~~al~l~P~~-~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  297 (336)
T 1p5q_A          245 DFELARADFQKVLQLYPNN-KAAKTQLAVCQQRIRRQLAREKKLYANMFERLAE  297 (336)
T ss_dssp             CHHHHHHHHHHHHHHCSSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999998 6899999999999999999999999999977543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.92  E-value=5.3e-25  Score=230.50  Aligned_cols=272  Identities=15%  Similarity=0.162  Sum_probs=161.8

Q ss_pred             ccccEEEEEeecCCCcCCCCCCCeEEEEEEEEeCC-CcEEEecC-CCccEEEEcCCC-CccchHHHhhccCCCCcEEEEE
Q 006908          151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGD-GKLILSHR-EGEPYFFTFGKS-EVPKGLEMGIGTMTREEKAVIY  227 (626)
Q Consensus       151 ~D~~v~~~i~~~G~g~~~~~~g~~V~v~y~~~~~~-g~~~~s~~-~~~p~~~~~g~g-~~~~gle~~l~~mk~Ge~~~~~  227 (626)
                      .+.++.+.++++|.| ..|..||.|+|||++++.+ |++|+++. .+.|+.|.+|.| ++|+||+++|.+|++||+++|.
T Consensus        47 ~~~~~~~~~~~~g~g-~~~~~gd~v~v~y~g~~~~~g~~fd~~~~~~~~~~~~lg~~~~~i~g~e~~l~~m~~Ge~~~~~  125 (338)
T 2if4_A           47 LDEKVSKQIIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVH  125 (338)
T ss_dssp             EETTEEEEEEECCBS-CCCCTTCEEEEEEEEEETTTCCCCEEHHHHTCCEEEETTSCCGGGHHHHHHHHHCCBTCEEEEE
T ss_pred             CCCCeEEEEEeCCCC-CCCCCCCEEEEEEEEEEcCCCcEeecccCCCCCeEEEcCCCCcccHHHHHHHhcCCCCCeEEEE
Confidence            456899999999999 6899999999999999875 99999874 578999999999 9999999999999999999999


Q ss_pred             EeCCccCCCCCC---CCCCCcceEEEEEEEeeEEeeeeecCCCcEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEec--
Q 006908          228 VTSQYLTPSPLM---PVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLN--  302 (626)
Q Consensus       228 v~~~~~~g~~~~---~~ip~~~~l~~~v~l~~~~~~~d~~~dg~v~k~il~~G~G~~~~~~p~~~~~V~v~y~~~~~~--  302 (626)
                      |||.++||..+.   +.||++.+++|+|+|.++....+                +.....   .  .    ..-....  
T Consensus       126 i~~~~~yg~~~~~~~~~ip~~~~l~f~v~L~~~~~~~e----------------~~~~~~---~--~----~~~~~~~a~  180 (338)
T 2if4_A          126 VGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKE----------------GKARSD---M--T----VEERIGAAD  180 (338)
T ss_dssp             ECGGGSSCSSCCCSSSCCCTTCCEEEEEEEEEEECCCC----------------CBTTTB---C--C----HHHHHHHHH
T ss_pred             ECHHHhcCCCCCCCCCCCCCCCcEEEEEEEEEecCCcc----------------cccccc---C--C----HHHHHHHHH
Confidence            999999998664   77999999999999998854221                000000   0  0    0000000  


Q ss_pred             ---CCCcEEEeeccCCCCCCEEEEcCCC-cchhhHHHHhhcCCCCCEEEEEecCCCccccCCCCCCCCCCcceeeeeeec
Q 006908          303 ---EEKKVFYDTRVDNDGQPLEFSSGEG-LVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELL  378 (626)
Q Consensus       303 ---~~g~~~~dt~~~~~~~p~~f~lG~~-~v~~gle~~l~~M~~GE~~~~~i~~~~ayg~~~~~~~ip~~~~l~~~vel~  378 (626)
                         ..|..+             +..|+- .-+..++.++....                         .+.  .|.    
T Consensus       181 ~~~~~g~~~-------------~~~g~~~~A~~~y~~Al~~~p-------------------------~~~--~~~----  216 (338)
T 2if4_A          181 RRKMDGNSL-------------FKEEKLEEAMQQYEMAIAYMG-------------------------DDF--MFQ----  216 (338)
T ss_dssp             HHHHHHHHT-------------CSSSCCHHHHHHHHHHHHHSC-------------------------HHH--HHT----
T ss_pred             HHHHHHHHH-------------HhcCCHHHHHHHHHHHHHHhc-------------------------cch--hhh----
Confidence               000000             000100 01122222222110                         000  000    


Q ss_pred             ccccCCCCCCCChhhHHH--HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHH
Q 006908          379 GFEKPKDWTGLSFDGIMD--EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC  456 (626)
Q Consensus       379 ~~~~~~~~~~~~~~e~~~--~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~  456 (626)
                         .    . -...+...  ....+.+.|..+++.|+|++|+..|++||.    +.|.+           ..+|+|+|.|
T Consensus       217 ---~----~-~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~a  273 (338)
T 2if4_A          217 ---L----Y-GKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT----EEEKN-----------PKALFRRGKA  273 (338)
T ss_dssp             ---C----C-HHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHH
T ss_pred             ---h----c-ccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHH
Confidence               0    0 00011111  123677899999999999999999999999    56655           5689999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCCH
Q 006908          457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA-YMALGEFEEAQRDFEMMMKVDKSSE  515 (626)
Q Consensus       457 ~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a-~~~lg~~~eA~~~~~kAl~l~P~~~  515 (626)
                      |+.+++|++|+.++.++++++|++..++..++.+ ....+.++.|.+.|.+++.+.|.+.
T Consensus       274 ~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~  333 (338)
T 2if4_A          274 KAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGG  333 (338)
T ss_dssp             HHTTTCHHHHHHHHHHTTC-----------------------------------------
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence            9999999999999999999999999999999998 4456778889999999999999863

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1

Probab=99.89  E-value=5.2e-23  Score=185.01  Aligned_cols=128  Identities=26%  Similarity=0.490  Sum_probs=107.5

Q ss_pred             cCcee--cCCceEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCC
Q 006908           22 RRMKI--VPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTM   99 (626)
Q Consensus        22 ~~~~~--~~~gv~~~i~~~G~G~~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m   99 (626)
                      +.+++  +++||+|+++++|+|...|+.||.|+|||++++.||++|++|+.    .+.|+.|.+|.+++++||+++|.+|
T Consensus         5 ~~dv~~~~~~gl~~~~l~~G~g~~~~~~gd~V~v~Y~g~~~dG~~fdss~~----~~~p~~f~lG~~~vi~G~e~~l~gm   80 (135)
T 1r9h_A            5 KIDITPKKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRD----RGDQFSFNLGRGNVIKGWDLGVATM   80 (135)
T ss_dssp             CEECSTTCCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHH----HTSCEEEETTTTSSCHHHHHHHTTC
T ss_pred             ceecccCCCCcEEEEEEEccCCCcCCCCCCEEEEEEEEEECCCCEEEecCc----CCCCEEEEeCCCCccHHHHHHHhcC
Confidence            34566  89999999999999985699999999999999889999999985    5679999999999999999999999


Q ss_pred             CCCcEEEEEeeccccccCCCCCCCCCCCCCCCceEEEEEEeeeeccccccc-ccccEEE
Q 006908          100 LKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIA-DDFGVVK  157 (626)
Q Consensus       100 ~~Ge~~~~~ip~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~~~~~~v~-~D~~v~~  157 (626)
                      ++|++++|+|||+++||..+.+    +.||++++++|+|+|+++....... .|++++|
T Consensus        81 ~~Ge~~~v~ip~~~aYG~~g~~----~~Ip~~~~l~f~v~l~~i~~~~l~~~~d~~v~k  135 (135)
T 1r9h_A           81 TKGEVAEFTIRSDYGYGDAGSP----PKIPGGATLIFEVELFEWSAEDISPDRDGTILR  135 (135)
T ss_dssp             CBTCEEEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEEC-------------
T ss_pred             CCCCEEEEEEChHHcCCCCCCC----CCcCcCCcEEEEEEEEEeecCCcCcCCCCcccC
Confidence            9999999999999999998875    7899999999999999997653222 5555543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.89  E-value=2.9e-22  Score=209.47  Aligned_cols=267  Identities=15%  Similarity=0.196  Sum_probs=193.9

Q ss_pred             cccccccEEEEEeecCCCcCCCCCCCeEEEEEEEEeCCCcEEEecCCCccEEEEcCCCC---ccchHHHhhccCCCCcEE
Q 006908          148 IIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSE---VPKGLEMGIGTMTREEKA  224 (626)
Q Consensus       148 ~v~~D~~v~~~i~~~G~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~g~---~~~gle~~l~~mk~Ge~~  224 (626)
                      .++.|++++++|+++|.|...|..|+.|+|||++++ +|++|+++    |+.|.+|.|.   ++++|++||.+|++|+++
T Consensus        20 ~~~~~~~~~~~~~~~g~g~~~p~~~~~v~v~y~g~~-~g~~fd~~----~~~f~lG~g~~~~~~~~~e~al~~~~~Ge~~   94 (336)
T 1p5q_A           20 HMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-KDKLFDQR----ELRFEIGEGENLDLPYGLERAIQRMEKGEHS   94 (336)
T ss_dssp             --CCTTSEEEEEEECCCCSCCCCTTCEEEEEEEEEE-TTEEEEEE----EEEEETTCGGGGTCCHHHHHHHTTCCTTCEE
T ss_pred             eecCCCcEEEEEEeCCCCCCCCCCCCeEEEEEEEEE-CCEEEecC----CeEEEeCCCCccccchHHHHHHhcCCCCCeE
Confidence            345788999999999999778999999999999988 99999986    8999999886   599999999999999999


Q ss_pred             EEEEeCCccCCCCCCC--CCCCcceEEEEEEEeeEEeeeeecCCCcEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEec
Q 006908          225 VIYVTSQYLTPSPLMP--VVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLN  302 (626)
Q Consensus       225 ~~~v~~~~~~g~~~~~--~ip~~~~l~~~v~l~~~~~~~d~~~dg~v~k~il~~G~G~~~~~~p~~~~~V~v~y~~~~~~  302 (626)
                      .|.|+|+++||..+.+  .||++..+.|++.|.++....+...-      .+.    ..|    ..   ...+      .
T Consensus        95 ~l~i~p~~ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~------a~~----~~p----~~---a~~~------~  151 (336)
T 1p5q_A           95 IVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEM------NSE----EKL----EQ---STIV------K  151 (336)
T ss_dssp             EEEECTTTTTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGC------CHH----HHH----HH---HHHH------H
T ss_pred             EEEECCccccCcCCCCccCCCCCCeEEEEEEEeecccccchhcC------CHH----HHH----HH---HHHH------H
Confidence            9999999999987654  58999999999999998643322100      000    000    00   0000      0


Q ss_pred             CCCcEEEeeccCCCCCCEEEEcCC-CcchhhHHHHhhcCCCCCEEEEEecCCCccccCCCCCCCCCCcceeeeeeecccc
Q 006908          303 EEKKVFYDTRVDNDGQPLEFSSGE-GLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE  381 (626)
Q Consensus       303 ~~g~~~~dt~~~~~~~p~~f~lG~-~~v~~gle~~l~~M~~GE~~~~~i~~~~ayg~~~~~~~ip~~~~l~~~vel~~~~  381 (626)
                      .-|...             +..|+ ..-+..++.++....           ..              ..  +.       
T Consensus       152 ~~g~~~-------------~~~g~~~~A~~~y~~Al~~~p-----------~~--------------~~--~~-------  184 (336)
T 1p5q_A          152 ERGTVY-------------FKEGKYKQALLQYKKIVSWLE-----------YE--------------SS--FS-------  184 (336)
T ss_dssp             HHHHHH-------------HHHTCHHHHHHHHHHHHHHTT-----------TC--------------CC--CC-------
T ss_pred             HHHHHH-------------HHCCCHHHHHHHHHHHHHHhh-----------cc--------------cc--CC-------
Confidence            000000             01111 012233344443211           00              00  00       


Q ss_pred             cCCCCCCCChhhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcC
Q 006908          382 KPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG  461 (626)
Q Consensus       382 ~~~~~~~~~~~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~  461 (626)
                           .....+.....+..+.+.|..+++.|+|++|+..|++|+.    +.|.+           ..+|+++|.||+.++
T Consensus       185 -----~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~~~~~~g  244 (336)
T 1p5q_A          185 -----NEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE----LDSNN-----------EKGLSRRGEAHLAVN  244 (336)
T ss_dssp             -----SHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTT
T ss_pred             -----hHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHCC
Confidence                 0000111122467888999999999999999999999999    56665           568999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHh
Q 006908          462 ECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEA-QRDFEMMMK  509 (626)
Q Consensus       462 ~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA-~~~~~kAl~  509 (626)
                      +|++|+.++.++|+++|++..+++++|.++..++++++| ...|++++.
T Consensus       245 ~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          245 DFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE  293 (336)
T ss_dssp             CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998 445555543

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A

Probab=99.88  E-value=1.1e-22  Score=184.99  Aligned_cols=115  Identities=30%  Similarity=0.501  Sum_probs=107.1

Q ss_pred             cCcee--cCCceEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCC
Q 006908           22 RRMKI--VPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTM   99 (626)
Q Consensus        22 ~~~~~--~~~gv~~~i~~~G~G~~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m   99 (626)
                      ..++.  .++||+|+++++|+|..+|..||.|.|||++++.||++|++|+.    .+.|+.|.+|.+++++||+++|.+|
T Consensus        26 ~~di~~~~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~----~~~p~~f~lG~g~~i~G~e~~l~gm  101 (144)
T 3o5e_A           26 GEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHD----RNEPFVFSLGKGQVIKAWDIGVATM  101 (144)
T ss_dssp             CEECCSSCSSSEEEEEEECCBSSCCCCTTCEEEEEEEEECTTSCEEEESGG----GTSCEEEETTSSSSCHHHHHHHTTC
T ss_pred             cccccccCCCeEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEeecc----cCCCeEEEeCCCcccHHHHHHHhCC
Confidence            34455  79999999999999986699999999999999889999999987    6789999999999999999999999


Q ss_pred             CCCcEEEEEeeccccccCCCCCCCCCCCCCCCceEEEEEEeeeec
Q 006908          100 LKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA  144 (626)
Q Consensus       100 ~~Ge~~~~~ip~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~~  144 (626)
                      ++|+++.|+|||+++||..+.+    +.|||+++|+|+|+|++|+
T Consensus       102 ~~Ge~~~v~ipp~~aYG~~g~~----~~Ipp~~~L~f~VeL~~ik  142 (144)
T 3o5e_A          102 KKGEICHLLCKPEYAYGSAGSL----PKIPSNATLFFEIELLDFK  142 (144)
T ss_dssp             CBTCEEEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEE
T ss_pred             CCCCEEEEEEChHHCcCCCCCC----CCcCCCCeEEEEEEEEEec
Confidence            9999999999999999999885    7899999999999999985

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*

Probab=99.88  E-value=2.5e-22  Score=176.96  Aligned_cols=114  Identities=26%  Similarity=0.492  Sum_probs=102.2

Q ss_pred             cCCceEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEeeccCC---CCCCcceEEEeCCCccchhHHhhcCCCCCCc
Q 006908           27 VPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEY---GGKGIPIRHVLGKSKILLGLLEGIPTMLKGE  103 (626)
Q Consensus        27 ~~~gv~~~i~~~G~G~~~p~~gd~V~v~y~~~~~dG~~~~st~~~~---~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge  103 (626)
                      .|+||+|+++++|+|...|+.||.|+|||++++.||++|++|+...   ...+.|+.|.+|.+++++||+++|.+|++|+
T Consensus         2 ~p~g~~~~il~~G~g~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge   81 (119)
T 3kz7_A            2 GPPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGE   81 (119)
T ss_dssp             CSCSEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCCSSSTTTTCCCEEEETTSSSSCHHHHHHHTTCCTTC
T ss_pred             CCCccEEEEEEcCCCCCcCCCCCEEEEEEEEEECCCCEEEeccccccccccCCCCEEEEECCCChhHHHHHHHhCCCCCC
Confidence            5899999999999997669999999999999988999999997410   0124799999999999999999999999999


Q ss_pred             EEEEEeeccccccCCCCCCCCCCCCCCCceEEEEEEeeee
Q 006908          104 VSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF  143 (626)
Q Consensus       104 ~~~~~ip~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~  143 (626)
                      +++|+|||+++||..+.+   +..|||+++|+|+|+|+++
T Consensus        82 ~~~v~ip~~~aYG~~g~~---~~~Ip~~~~l~f~veL~~i  118 (119)
T 3kz7_A           82 KARLEIEPEWAYGKKGQP---DAKIPPNTKLIFEVELVDI  118 (119)
T ss_dssp             EEEEEECGGGTTCTTCBG---GGTBCTTCCEEEEEEEEEE
T ss_pred             EEEEEECcHHhcCCCCCC---CCccCcCCeEEEEEEEEEe
Confidence            999999999999999874   2379999999999999986

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A

Probab=99.88  E-value=2.2e-22  Score=179.31  Aligned_cols=111  Identities=32%  Similarity=0.532  Sum_probs=104.8

Q ss_pred             ecCCceEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCCCcEE
Q 006908           26 IVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVS  105 (626)
Q Consensus        26 ~~~~gv~~~i~~~G~G~~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge~~  105 (626)
                      .+++||+|+++++|+|..+|+.||.|+|||++++.||++|++|+.    .+.|+.|.+|.+++++||+++|.+|++|+++
T Consensus        16 ~~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~----~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~   91 (128)
T 3o5q_A           16 KKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHD----RNEPFVFSLGKGQVIKAWDIGVATMKKGEIC   91 (128)
T ss_dssp             SCSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEEHHH----HTSCEEEETTSSSSCHHHHHHHTTCCTTCEE
T ss_pred             cCCCCEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEecCC----CCCCEEEEECCCCccHHHHHHHhcCCCCCEE
Confidence            378999999999999986699999999999999999999999986    5789999999999999999999999999999


Q ss_pred             EEEeeccccccCCCCCCCCCCCCCCCceEEEEEEeeeec
Q 006908          106 MFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA  144 (626)
Q Consensus       106 ~~~ip~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~~  144 (626)
                      +|.|||+++||..+.+    +.|||+++|+|+|+|+++.
T Consensus        92 ~v~ip~~~aYG~~g~~----~~Ip~~~~l~f~vel~~i~  126 (128)
T 3o5q_A           92 HLLCKPEYAYGSAGSL----PKIPSNATLFFEIELLDFK  126 (128)
T ss_dssp             EEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEE
T ss_pred             EEEEChHHcCCCCCCC----CCcCCCCEEEEEEEEEEec
Confidence            9999999999999875    7899999999999999985

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1

Probab=99.88  E-value=3.7e-22  Score=174.09  Aligned_cols=111  Identities=25%  Similarity=0.514  Sum_probs=103.5

Q ss_pred             ecCCceEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCCCcEE
Q 006908           26 IVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVS  105 (626)
Q Consensus        26 ~~~~gv~~~i~~~G~G~~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge~~  105 (626)
                      ++++|+.|+++++|+|...|+.||.|++||++++.||++|++++.    .+.|+.|.+|.+++++||+++|.+|++|+++
T Consensus         3 ~~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~----~~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~   78 (113)
T 1yat_A            3 VIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVD----RGSPFQCNIGVGQVIKGWDVGIPKLSVGEKA   78 (113)
T ss_dssp             ECGGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEESTT----TTCCEEEETTSSSSCHHHHHHGGGCCTTCEE
T ss_pred             CCCCCeEEEEEECCCCcccCCCCCEEEEEEEEEECCCCEEEecCC----CCCcEEEEeCCCCccHHHHHHHhCCCCCCEE
Confidence            578999999999999987689999999999999889999999986    5679999999999999999999999999999


Q ss_pred             EEEeeccccccCCCCCCCCCCCCCCCceEEEEEEeeeec
Q 006908          106 MFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA  144 (626)
Q Consensus       106 ~~~ip~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~~  144 (626)
                      +|.|||+++||..+.+    +.|||+++++|+|+|++++
T Consensus        79 ~v~ip~~~ayG~~~~~----~~Ip~~~~l~f~vel~~ik  113 (113)
T 1yat_A           79 RLTIPGPYAYGPRGFP----GLIPPNSTLVFDVELLKVN  113 (113)
T ss_dssp             EEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEC
T ss_pred             EEEECHHHCcCCCCCC----CCcCCCCeEEEEEEEEEeC
Confidence            9999999999998874    6799999999999999873

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*

Probab=99.87  E-value=9.8e-22  Score=175.87  Aligned_cols=113  Identities=27%  Similarity=0.453  Sum_probs=105.1

Q ss_pred             cCceecCCceEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCC
Q 006908           22 RRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK  101 (626)
Q Consensus        22 ~~~~~~~~gv~~~i~~~G~G~~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~  101 (626)
                      ...+++++|+.|+++++|+|.. |+.||.|+|||++++.||++|+++++    .+.|+.|.+|.+++++||+++|.+|++
T Consensus        21 ~~~~~~~~gl~~~~l~~G~G~~-~~~gd~V~v~Y~g~~~dG~~fdss~~----~~~p~~f~lG~g~vi~G~eeaL~gmk~   95 (133)
T 2y78_A           21 MTVVTTESGLKYEDLTEGSGAE-ARAGQTVSVHYTGWLTDGQKFDSSKD----RNDPFAFVLGGGMVIKGWDEGVQGMKV   95 (133)
T ss_dssp             TCCEECTTSCEEEEEECCSSCB-CCTTSEEEEEEEEEETTSCEEEETTT----TTCCEEEETTSSSSCHHHHHHSTTCBT
T ss_pred             CCcEECCCCEEEEEEEcCCCCC-CCCCCEEEEEEEEEECCCCEEeccCc----CCCCEEEEeCCCChhHHHHHHHcCCCC
Confidence            3467899999999999999976 99999999999999889999999986    568999999999999999999999999


Q ss_pred             CcEEEEEeeccccccCCCCCCCCCCCCCCCceEEEEEEeeee
Q 006908          102 GEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF  143 (626)
Q Consensus       102 Ge~~~~~ip~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~  143 (626)
                      |++++|.|||+++||..+.+    +.|||+++|+|+|+|+++
T Consensus        96 Ge~~~v~ip~~~aYG~~~~~----~~Ipp~~~l~f~VeL~~I  133 (133)
T 2y78_A           96 GGVRRLTIPPQLGYGARGAG----GVIPPNATLVFEVELLDV  133 (133)
T ss_dssp             TCEEEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEC
T ss_pred             CCEEEEEECcHHhCCCCCCC----CCCCCCCeEEEEEEEEEC
Confidence            99999999999999998874    679999999999999875

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...

Probab=99.87  E-value=9.6e-22  Score=169.78  Aligned_cols=106  Identities=26%  Similarity=0.558  Sum_probs=99.6

Q ss_pred             ceEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCCCcEEEEEe
Q 006908           30 SLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKM  109 (626)
Q Consensus        30 gv~~~i~~~G~G~~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge~~~~~i  109 (626)
                      ||+|+++++|+|..+|+.||.|++||++++.||++|++|+.    .+.|+.|.+|.+++++||+++|.+|++|++++|.|
T Consensus         1 Gl~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~----~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~~~i   76 (107)
T 2ppn_A            1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRD----RNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTI   76 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHH----HTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEE
T ss_pred             CcEEEEEECcCCCcCCCCCCEEEEEEEEEECCCCEEEecCC----CCCCEEEEeCCCChHHHHHHHHhCCCCCCEEEEEE
Confidence            78999999999987699999999999999889999999986    45799999999999999999999999999999999


Q ss_pred             eccccccCCCCCCCCCCCCCCCceEEEEEEeeee
Q 006908          110 KPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF  143 (626)
Q Consensus       110 p~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~  143 (626)
                      ||+++||..+.+    +.|||+++++|+|+|+++
T Consensus        77 p~~~ayG~~~~~----~~Ip~~~~l~f~v~l~~v  106 (107)
T 2ppn_A           77 SPDYAYGATGHP----GIIPPHATLVFDVELLKL  106 (107)
T ss_dssp             CGGGTTTTTCBT----TTBCTTCCEEEEEEEEEE
T ss_pred             CHHHccCCCCCC----CCcCCCCeEEEEEEEEEe
Confidence            999999998875    679999999999999987

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}

Probab=99.86  E-value=2.3e-22  Score=180.57  Aligned_cols=116  Identities=27%  Similarity=0.403  Sum_probs=100.7

Q ss_pred             cccCceecCCceEEEEEecCCCCCCCCCCCEEEEEEEEEEc-CCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCC
Q 006908           20 DKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTL-DGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPT   98 (626)
Q Consensus        20 ~~~~~~~~~~gv~~~i~~~G~G~~~p~~gd~V~v~y~~~~~-dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~   98 (626)
                      ..+.++++++||+|+++++|+|.. +..||.|+|||++++. +|++|++|+.    .+.|+.|.+|.+++++||+++|.+
T Consensus        17 ~~~~~v~~~~gl~~~vl~~G~g~~-~~~gd~V~v~Y~g~l~~~G~~fdss~~----~~~p~~f~lG~g~~i~G~e~aL~g   91 (134)
T 3b7x_A           17 QRMLDISGDRGVLKDVIREGAGDL-VAPDASVLVKYSGYLEHMDRPFDSNYF----RKTPRLMKLGEDITLWGMELGLLS   91 (134)
T ss_dssp             TTCEESSSSSSEEEEEEECCEEEE-CCTTCEEEEEEEEECTTCSSCSEEC-----------CEEC-CCCCCHHHHHHHHT
T ss_pred             cccceeeCCCCEEEEEEEcCCCCC-CCCCCEEEEEEEEEECCCCeEEEecCC----CCCCEEEEcCCcchhHHHHHHHhC
Confidence            445678899999999999999987 8899999999999987 6999999986    567999999999999999999999


Q ss_pred             CCCCcEEEEEeeccccccCCCCCCCCCCCCCCCceEEEEEEeeeec
Q 006908           99 MLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA  144 (626)
Q Consensus        99 m~~Ge~~~~~ip~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~~  144 (626)
                      |++|++++|+|||+++||..+.+    +.|||+++|+|+|+|+++.
T Consensus        92 m~~Ge~~~v~ip~~~aYG~~~~~----~~Ip~~~~l~f~VeL~~i~  133 (134)
T 3b7x_A           92 MRRGELARFLFKPNYAYGTLGCP----PLIPPNTTVLFEIELLDFL  133 (134)
T ss_dssp             CEETCEEEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEC
T ss_pred             CCCCCEEEEEECHHHCcCCCCCC----CCcCcCCeEEEEEEEEEEe
Confidence            99999999999999999998875    6799999999999999984

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}

Probab=99.86  E-value=1.7e-21  Score=183.49  Aligned_cols=123  Identities=26%  Similarity=0.399  Sum_probs=110.6

Q ss_pred             cccccCceecCCceEEEEEecCCCCCCCCCCCEEEEEEEEEEc-CCcEEEeeccCCCCCCcceEEEeCCC-ccchhHHhh
Q 006908           18 EDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTL-DGVIVESTRSEYGGKGIPIRHVLGKS-KILLGLLEG   95 (626)
Q Consensus        18 ~~~~~~~~~~~~gv~~~i~~~G~G~~~p~~gd~V~v~y~~~~~-dG~~~~st~~~~~~~~~p~~~~lg~~-~~~~gle~~   95 (626)
                      .+.....+++++||+|+++++|.|.. |..||.|+|||++++. +|++|++|+.    .+.|+.|.+|.+ ++++||+++
T Consensus        38 ~~~~~~~~~~~~gl~~~vl~~G~G~~-~~~Gd~V~v~Y~g~l~~dG~~fdss~~----~~~p~~f~lG~g~~vi~G~eea  112 (180)
T 2f4e_A           38 PKVDSEAEVLDEKVSKQIIKEGHGSK-PSKYSTCFLHYRAWTKNSQHKFEDTWH----EQQPIELVLGKEKKELAGLAIG  112 (180)
T ss_dssp             CCCCSCCEEEETTEEEEEEECCBSCC-BCTTCEEEEEEEEEETTTCCEEEETTT----TTCCEEEETTSCCGGGHHHHHH
T ss_pred             cccCCCcEECCCceEEEEEeCCCCCC-CCCCCEEEEEEEEEECCCCcEEeccCc----cCCCEEEEeCCCCchhHHHHHH
Confidence            34566788999999999999999985 9999999999999987 6999999986    678999999999 999999999


Q ss_pred             cCCCCCCcEEEEEeeccccccCCCCCCCCCCCCCCCceEEEEEEeeeecccc
Q 006908           96 IPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAK  147 (626)
Q Consensus        96 l~~m~~Ge~~~~~ip~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~~~~~  147 (626)
                      |.+|++|++++|+|||+++||..+.+.  ++.||++++|+|+|+|+++....
T Consensus       113 L~gMk~Ge~~~v~iPp~~aYG~~g~~~--~~~Ip~~s~l~F~VeL~~v~~~~  162 (180)
T 2f4e_A          113 VASMKSGERALVHVGWELAYGKEGNFS--FPNVPPMADLLYEVEVIGFDETK  162 (180)
T ss_dssp             HTTCCBTCEEEEEECGGGTTTTTCBSS--SSCBCTTCCEEEEEEEEEESCBC
T ss_pred             HhCCCCCCEEEEEECchHhCCcCCccc--CCCcCCCCeEEEEEEEEEEecCc
Confidence            999999999999999999999987621  25799999999999999997544

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1

Probab=99.86  E-value=1.2e-21  Score=181.45  Aligned_cols=115  Identities=23%  Similarity=0.398  Sum_probs=106.4

Q ss_pred             cCceecCCceEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCC
Q 006908           22 RRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK  101 (626)
Q Consensus        22 ~~~~~~~~gv~~~i~~~G~G~~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~  101 (626)
                      ...+++++||+|+++++|+|...|..||.|+|||++++.||++|++|+.    .+.|+.|.+  +++++||+++|.+|++
T Consensus        30 ~~~~~~~sGl~~~vl~~G~G~~~~~~gd~V~v~Y~g~l~dG~~fdss~~----~g~p~~f~l--g~vI~G~eeaL~gMk~  103 (167)
T 1jvw_A           30 PDAVKLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRE----RGKPTTFRP--NEVIKGWTEALQLMRE  103 (167)
T ss_dssp             TTEEECTTSCEEEEEECCCCSBCCCTTCCEEEEEEEECTTSCEEEEHHH----HTSCEEECG--GGSCHHHHHHHTTCCT
T ss_pred             CCcEECCCCEEEEEEEcCCCCcCCCCCCEEEEEEEEEECCCCEEeeccc----cCCCEEEEe--CchhHHHHHHHcCCCC
Confidence            4678899999999999999986699999999999999889999999986    568999999  5899999999999999


Q ss_pred             CcEEEEEeeccccccCCCCCCCCCCCCCCCceEEEEEEeeeeccc
Q 006908          102 GEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKA  146 (626)
Q Consensus       102 Ge~~~~~ip~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~~~~  146 (626)
                      |++++|+|||+++||..+.+    +.||||++|+|+|+|+++.+.
T Consensus       104 Ge~~~~~Ip~~laYG~~g~~----~~Ipp~s~LiF~VeL~~i~~~  144 (167)
T 1jvw_A          104 GDRWRLFIPYDLAYGVTGGG----GMIPPYSPLEFDVELISIKDG  144 (167)
T ss_dssp             TCEEEEEECGGGTTTTTCSS----SSSCTTCCEEEEEEEEEEGGG
T ss_pred             CCEEEEEECchhhCCCCCCC----CCcCCCCeEEEEEEEEEEEcC
Confidence            99999999999999998874    689999999999999999754

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}

Probab=99.86  E-value=2.4e-21  Score=172.04  Aligned_cols=116  Identities=23%  Similarity=0.357  Sum_probs=104.9

Q ss_pred             cCceecCCceEEEEEecCC--CCCCCCCCCEEEEEEEEEEc-CCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCC
Q 006908           22 RRMKIVPGSLMKAVMRPGG--GDSTPSDGDQVAYHCTVRTL-DGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPT   98 (626)
Q Consensus        22 ~~~~~~~~gv~~~i~~~G~--G~~~p~~gd~V~v~y~~~~~-dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~   98 (626)
                      ...+++++|++|+++++|.  |.. |+.||.|.|||++++. ||++|++|+..  +.+.|+.|.+|.+++++||+++|.+
T Consensus         5 ~~~~~~~~gl~~~~l~~g~~~g~~-~~~gd~V~v~Y~g~~~~dG~~fdss~~~--~~~~p~~f~lG~~~~i~G~e~~l~g   81 (125)
T 4dip_A            5 MGALIPEPEVKIEVLQKPFICHRK-TKGGDLMLVHYEGYLEKDGSLFHSTHKH--NNGQPIWFTLGILEALKGWDQGLKG   81 (125)
T ss_dssp             CGGGCCCCCCEEEEEECCSCCSCC-CCTTCEEEEEEEEEETTTCCEEEEHHHH--TTTCCEEEETTSCSSCHHHHHHSTT
T ss_pred             CceEECCCCeEEEEEEcCCCCCCc-CCCCCEEEEEEEEEECCCCcEEEEcccC--CCCcCEEEEeCCCChhHHHHHHHhC
Confidence            4567899999999999998  555 9999999999999998 99999999841  1357999999999999999999999


Q ss_pred             CCCCcEEEEEeeccccccCCCCCCCCCCCCCCCceEEEEEEeeeecc
Q 006908           99 MLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAK  145 (626)
Q Consensus        99 m~~Ge~~~~~ip~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~~~  145 (626)
                      |++|++++|.|||+++||..+.     +.|||+++|+|+|+|+++..
T Consensus        82 m~~Ge~~~~~ip~~~aYG~~g~-----~~Ip~~~~l~f~vel~~i~~  123 (125)
T 4dip_A           82 MCVGEKRKLIIPPALGYGKEGK-----GKIPPESTLIFNIDLLEIRN  123 (125)
T ss_dssp             CCTTCEEEEEECGGGTTTTTCB-----TTBCTTCCEEEEEEEEEEEC
T ss_pred             CCCCCEEEEEEChHHhcCCCCC-----CCCCCCCeEEEEEEEEEEEc
Confidence            9999999999999999999885     47999999999999999864

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1

Probab=99.86  E-value=2e-21  Score=174.62  Aligned_cols=120  Identities=32%  Similarity=0.485  Sum_probs=101.6

Q ss_pred             ccccEEEEEeecCCCcCCCCCCCeEEEEEEEEeCCCcEEEecC-CCccEEEEcCCCCccchHHHhhccCCCCcEEEEEEe
Q 006908          151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT  229 (626)
Q Consensus       151 ~D~~v~~~i~~~G~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~  229 (626)
                      .++++.++++++|.|...|+.||.|+|||++++.||++|+++. ++.|+.|.+|.+++++||++||.+|++|++++|.||
T Consensus        12 ~~~gl~~~~l~~G~g~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~vi~G~e~~l~gm~~Ge~~~v~ip   91 (135)
T 1r9h_A           12 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIR   91 (135)
T ss_dssp             CCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTTTSSCHHHHHHHTTCCBTCEEEEEEC
T ss_pred             CCCcEEEEEEEccCCCcCCCCCCEEEEEEEEEECCCCEEEecCcCCCCEEEEeCCCCccHHHHHHHhcCCCCCEEEEEEC
Confidence            6789999999999996679999999999999999999999885 468999999999999999999999999999999999


Q ss_pred             CCccCCCCCC-CCCCCcceEEEEEEEeeEEeeeeec--CCCcEEE
Q 006908          230 SQYLTPSPLM-PVVEGCEEVHFEVELVHLIQVRDML--GDGRLIK  271 (626)
Q Consensus       230 ~~~~~g~~~~-~~ip~~~~l~~~v~l~~~~~~~d~~--~dg~v~k  271 (626)
                      |+++||..+. +.||++++|+|+|+|+++.. .++.  .||+|+|
T Consensus        92 ~~~aYG~~g~~~~Ip~~~~l~f~v~l~~i~~-~~l~~~~d~~v~k  135 (135)
T 1r9h_A           92 SDYGYGDAGSPPKIPGGATLIFEVELFEWSA-EDISPDRDGTILR  135 (135)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC--------------
T ss_pred             hHHcCCCCCCCCCcCcCCcEEEEEEEEEeec-CCcCcCCCCcccC
Confidence            9999998644 67999999999999999976 4777  7888876

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}

Probab=99.86  E-value=1.1e-21  Score=174.90  Aligned_cols=114  Identities=32%  Similarity=0.549  Sum_probs=105.1

Q ss_pred             cCceecCCceEEE--EEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCC
Q 006908           22 RRMKIVPGSLMKA--VMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTM   99 (626)
Q Consensus        22 ~~~~~~~~gv~~~--i~~~G~G~~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m   99 (626)
                      ...+.+++|++++  ++++|+|...|+.||.|+|||++++.||++|++|+.    .+.|+.|.+|.+++++||+++|.+|
T Consensus        15 ~~~~~~~~Gl~~~K~~l~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~----~~~p~~f~lG~g~vi~G~e~aL~gm   90 (130)
T 2lgo_A           15 QTQGPGSMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRS----RGKPFQFTLGAGEVIKGWDQGVATM   90 (130)
T ss_dssp             SSCSSSSSSCCCCEEEEECCCSSCCCCTTSEEEEEEEEECTTSCEEECTTT----TTCCEEEETTSTTSCHHHHHHHHHS
T ss_pred             ccceeCCCceEEEEEEEeccCCCccCCCCCEEEEEEEEEECCCCEEEccCc----CCCCEEEEeCCCCccHHHHHHHhCC
Confidence            4456789999999  999999987689999999999999889999999986    5679999999999999999999999


Q ss_pred             CCCcEEEEEeeccccccCCCCCCCCCCCCCCCceEEEEEEeeee
Q 006908          100 LKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF  143 (626)
Q Consensus       100 ~~Ge~~~~~ip~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~  143 (626)
                      ++|++++|.|||+++||..+.+    +.|||+++++|+|+|+++
T Consensus        91 ~~Ge~~~v~ip~~~aYG~~~~~----~~Ip~~~~l~f~VeL~~i  130 (130)
T 2lgo_A           91 TLGEKALFTIPYQLAYGERGYP----PVIPPKATLVFEVELLAV  130 (130)
T ss_dssp             CTTEEEEEEECTTTSTTTTCCS----TTSCSSCCEEEEEEEEEC
T ss_pred             CCCCEEEEEECcHHHCCCCCCC----CCcCCCCeEEEEEEEEEC
Confidence            9999999999999999998874    679999999999999875

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A

Probab=99.86  E-value=4.2e-21  Score=171.48  Aligned_cols=115  Identities=22%  Similarity=0.556  Sum_probs=100.2

Q ss_pred             CceecCCc-eEEEEEecC-CCC-CCCCCCCEEEEEEEEEE-cCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCC
Q 006908           23 RMKIVPGS-LMKAVMRPG-GGD-STPSDGDQVAYHCTVRT-LDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPT   98 (626)
Q Consensus        23 ~~~~~~~g-v~~~i~~~G-~G~-~~p~~gd~V~v~y~~~~-~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~   98 (626)
                      ...++++| ++++++++| .|. ..|+.||.|+|||++++ .||++|++|+.    .+.|+.|.+|.+++++||+++|.+
T Consensus         9 ~~~~~~~g~~~~~il~~G~~g~g~~~~~gd~V~v~Y~g~~~~dG~~fd~s~~----~~~p~~f~lG~g~~i~g~e~~l~g   84 (129)
T 2vn1_A            9 KVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFD----RNVPFKFHLEQGEVIKGWDICVSS   84 (129)
T ss_dssp             EEECSTTSSEEEEEEECCCCSGGGSCCTTCEEEEEEEEEETTTCCEEEEGGG----TTCCEEEETTSSSSCHHHHHHHTT
T ss_pred             CcEECCCCCEEEEEEeCCCCCCCCcCCCCCEEEEEEEEEECCCCeEEEecCC----CCccEEEEeCCCCcCHHHHHHHhC
Confidence            34455555 555799977 442 34899999999999998 79999999986    568999999999999999999999


Q ss_pred             CCCCcEEEEEeeccccccCCCCCCCCCCCCCCCceEEEEEEeeeecc
Q 006908           99 MLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAK  145 (626)
Q Consensus        99 m~~Ge~~~~~ip~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~~~  145 (626)
                      |++|++++|+|||+++||..+.+    +.|||+++++|+|+|+++..
T Consensus        85 m~~Ge~~~v~ip~~~aYG~~~~~----~~Ip~~~~l~f~vel~~v~~  127 (129)
T 2vn1_A           85 MRKNEKCLVRIESMYGYGDEGCG----ESIPGNSVLLFEIELLSFRE  127 (129)
T ss_dssp             CCTTCEEEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEEC
T ss_pred             CCCCCEEEEEEChHHcCCCCCCC----CCcCCCCeEEEEEEEEEEec
Confidence            99999999999999999998874    67999999999999999864

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A

Probab=99.86  E-value=1.3e-21  Score=174.66  Aligned_cols=121  Identities=22%  Similarity=0.411  Sum_probs=105.6

Q ss_pred             cccccCceecCCceEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcC
Q 006908           18 EDDKRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIP   97 (626)
Q Consensus        18 ~~~~~~~~~~~~gv~~~i~~~G~G~~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~   97 (626)
                      |+.+...+++++||+|+++++|+|.. |+.||.|+|||++++.||++|++|+.    .+.|+.|.+|.+++++||+++|.
T Consensus         1 ~~~~~~~~~~~~Gl~~~~l~~G~G~~-~~~gd~V~v~Y~g~~~dG~~fdss~~----~~~p~~f~lG~~~~i~G~~~~L~   75 (129)
T 1u79_A            1 ETTSCEFSVSPSGLAFCDKVVGYGPE-AVKGQLIKAHYVGKLENGKVFDSSYN----RGKPLTFRIGVGEVIKGWDQGIL   75 (129)
T ss_dssp             ----CCCEECTTSCEEEEEECCSSCB-CCTTCEEEEEEEEECTTSCEEEEHHH----HTSCEEEETTSSSSCHHHHHHHH
T ss_pred             CCCCCccEECCCCeEEEEEEcCCCCC-CCCCCEEEEEEEEEECCCCEEEecCC----CCCCEEEEeCCCCccHHHHHHhc
Confidence            45667778899999999999999987 99999999999999889999999985    56799999999999999999999


Q ss_pred             C------CCCCcEEEEEeeccccccCCCCCC-CCCCCCCCCceEEEEEEeeee
Q 006908           98 T------MLKGEVSMFKMKPQMHYGEDDCPV-AAPSTFPKDEELHFEIEMIDF  143 (626)
Q Consensus        98 ~------m~~Ge~~~~~ip~~~~~g~~~~~~-~~~~~i~~~~~lv~~v~l~~~  143 (626)
                      +      |++|++++|.|||+++||..+.+. ..++.||||++++|+|+|+++
T Consensus        76 G~~~~~~m~~Ge~~~v~ip~~~aYG~~~~~~~~~~~~Ip~~~~l~f~vel~~i  128 (129)
T 1u79_A           76 GSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  128 (129)
T ss_dssp             CBTTBCCCBTTCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             ccccccccCCCCEEEEEEChHHccCCCCCCccccCCcCCCCCeEEEEEEEEEe
Confidence            8      999999999999999999987520 012479999999999999986

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}

Probab=99.85  E-value=5.6e-21  Score=175.00  Aligned_cols=115  Identities=22%  Similarity=0.329  Sum_probs=100.7

Q ss_pred             ccccCceecCCce-EEEEEecCCCC-CCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhc
Q 006908           19 DDKRRMKIVPGSL-MKAVMRPGGGD-STPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGI   96 (626)
Q Consensus        19 ~~~~~~~~~~~gv-~~~i~~~G~G~-~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l   96 (626)
                      ++++.+ ++++|+ .|+++++|+|. ..|..||.|+|||++++.||++|+|+        .|+.|.+|.+++++||+++|
T Consensus        33 ~~~~~~-~~~sG~v~~~vl~~G~G~~~~p~~gd~V~v~Y~g~l~dG~~fds~--------~p~~f~lG~g~vi~G~eeaL  103 (157)
T 2jwx_A           33 PEEWLD-ILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE--------PELVFTLGDCDVIQALDLSV  103 (157)
T ss_dssp             CCSCEE-SSSSSSEEEEEEECCSTTSCCCCTTEEEEEEEEEECTTSCEEEEE--------EEEEEETTTTSSCHHHHHHT
T ss_pred             ccccce-ECCCCCEEEEEEEccCCCccCCCCCCEEEEEEEEEECCCCEeecC--------CCEEEEeCCCChhHHHHHHH
Confidence            444444 455665 89999999997 34999999999999998899999974        48999999999999999999


Q ss_pred             CCCCCCcEEEEEeeccccccCCC-CCCCCCCCCCCCceEEEEEEeeeeccc
Q 006908           97 PTMLKGEVSMFKMKPQMHYGEDD-CPVAAPSTFPKDEELHFEIEMIDFAKA  146 (626)
Q Consensus        97 ~~m~~Ge~~~~~ip~~~~~g~~~-~~~~~~~~i~~~~~lv~~v~l~~~~~~  146 (626)
                      .+|++|++++|+||++++||..+ .+    +.|||+++|+|+|+|+++...
T Consensus       104 ~gMk~Ge~~~v~IP~~~aYG~~g~~~----~~IPp~stLiF~VeL~~i~~~  150 (157)
T 2jwx_A          104 PLMDVGETAMVTADSKYCYGPQGSRS----PYIPPHAALCLEVTLKTAVDL  150 (157)
T ss_dssp             TTSCTTCEEEEEECGGGTTTTTCCSS----SCCCTTCCEEEEEEEEEEEEC
T ss_pred             cCCCCCCEEEEEECchhcCCcccccC----CCcCCCCeEEEEEEEEEEEcc
Confidence            99999999999999999999988 43    679999999999999999643

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=99.85  E-value=6.2e-21  Score=183.85  Aligned_cols=112  Identities=27%  Similarity=0.467  Sum_probs=105.7

Q ss_pred             CceecCCceEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCCC
Q 006908           23 RMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKG  102 (626)
Q Consensus        23 ~~~~~~~gv~~~i~~~G~G~~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~G  102 (626)
                      +.+++++|++|+++++|+|.. |..||.|+|||++++.||++|+||+.    .+.|+.|.+|.+++++||+++|.+|++|
T Consensus        98 t~~~~~sGl~~~vl~~G~G~~-~~~gd~V~v~Y~g~l~dG~~fdss~~----~~~P~~f~lG~g~vi~G~eeaL~gM~~G  172 (209)
T 3uf8_A           98 TVVTTESGLKYEDLTEGSGAE-ARAGQTVSVHYTGWLTDGQKFDSSKD----RNDPFAFVLGGGMVIKGWDEGVQGMKVG  172 (209)
T ss_dssp             CCEECTTSCEEEEEECCCSCB-CCTTCEEEEEEEEEETTSCEEEESGG----GTCCEEEETTSSSSCHHHHHHHTTCBTT
T ss_pred             cccCCCCceEEEEEEcCCCCc-CCCCCEEEEEEEEEECCCCEEEEccc----cCCCEEEEeCCCccchhHHHHHhCCCCC
Confidence            467899999999999999987 99999999999999999999999987    6789999999999999999999999999


Q ss_pred             cEEEEEeeccccccCCCCCCCCCCCCCCCceEEEEEEeeee
Q 006908          103 EVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF  143 (626)
Q Consensus       103 e~~~~~ip~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~  143 (626)
                      ++++|.|||++|||..+.+    +.|||+++|+|+|+|+++
T Consensus       173 e~~~v~Ipp~~aYG~~g~~----~~IP~~s~LvF~VeL~~I  209 (209)
T 3uf8_A          173 GVRRLTIPPQLGYGARGAA----GVIPPNATLVFEVELLDV  209 (209)
T ss_dssp             CEEEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEC
T ss_pred             CEEEEEECcHHhCCCCCCC----CCcCCCCeEEEEEEEEEC
Confidence            9999999999999999875    679999999999999875

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*

Probab=99.85  E-value=1.1e-20  Score=166.47  Aligned_cols=106  Identities=23%  Similarity=0.374  Sum_probs=98.6

Q ss_pred             cccEEEEEeecCCCcCCCCCCCeEEEEEEEEeCCCcEEEecCC--------CccEEEEcCCCCccchHHHhhccCCCCcE
Q 006908          152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE--------GEPYFFTFGKSEVPKGLEMGIGTMTREEK  223 (626)
Q Consensus       152 D~~v~~~i~~~G~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~~--------~~p~~~~~g~g~~~~gle~~l~~mk~Ge~  223 (626)
                      ..++.++++++|.|...|+.||.|+|||++++.||++|+++..        +.|+.|.+|.+++++||+++|.+|++|++
T Consensus         3 p~g~~~~il~~G~g~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge~   82 (119)
T 3kz7_A            3 PPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEK   82 (119)
T ss_dssp             SCSEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCCSSSTTTTCCCEEEETTSSSSCHHHHHHHTTCCTTCE
T ss_pred             CCccEEEEEEcCCCCCcCCCCCEEEEEEEEEECCCCEEEeccccccccccCCCCEEEEECCCChhHHHHHHHhCCCCCCE
Confidence            4589999999999977899999999999999999999998853        48999999999999999999999999999


Q ss_pred             EEEEEeCCccCCCCCCC--CCCCcceEEEEEEEeeE
Q 006908          224 AVIYVTSQYLTPSPLMP--VVEGCEEVHFEVELVHL  257 (626)
Q Consensus       224 ~~~~v~~~~~~g~~~~~--~ip~~~~l~~~v~l~~~  257 (626)
                      ++|.|||+++||..+.+  .||++++|+|+|+|+++
T Consensus        83 ~~v~ip~~~aYG~~g~~~~~Ip~~~~l~f~veL~~i  118 (119)
T 3kz7_A           83 ARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDI  118 (119)
T ss_dssp             EEEEECGGGTTCTTCBGGGTBCTTCCEEEEEEEEEE
T ss_pred             EEEEECcHHhcCCCCCCCCccCcCCeEEEEEEEEEe
Confidence            99999999999987664  69999999999999986

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.85  E-value=5.5e-21  Score=171.79  Aligned_cols=121  Identities=21%  Similarity=0.309  Sum_probs=106.5

Q ss_pred             CCCcccccCceecCCceEEEEEecCCCC-CCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHH
Q 006908           15 APSEDDKRRMKIVPGSLMKAVMRPGGGD-STPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLL   93 (626)
Q Consensus        15 ~~~~~~~~~~~~~~~gv~~~i~~~G~G~-~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle   93 (626)
                      .++.++++.+++.+++++|+++++|+|. ..|+.||.|+|||++++.||++|+++        .|+.|.+|.+++++||+
T Consensus         3 ~~~~~~~~~~~~~~g~l~~~vl~~G~G~~~~~~~gd~V~v~Y~g~~~dG~~fds~--------~p~~f~lG~g~~i~G~e   74 (135)
T 2d9f_A            3 SGSSGEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE--------PELVFTLGDCDVIQALD   74 (135)
T ss_dssp             CSCCCSSCEESSSSSSSEEEEEECCCSSCCCCCTTSEEEEEEEEEESSSCEEEEE--------EEEEEETTSCCSCTTTT
T ss_pred             CCCCcccCcEECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEecC--------CCEEEEeCCCChhHHHH
Confidence            3445666777776666999999999997 34899999999999998899999963        48999999999999999


Q ss_pred             hhcCCCCCCcEEEEEeeccccccCCC-CCCCCCCCCCCCceEEEEEEeeeecccc
Q 006908           94 EGIPTMLKGEVSMFKMKPQMHYGEDD-CPVAAPSTFPKDEELHFEIEMIDFAKAK  147 (626)
Q Consensus        94 ~~l~~m~~Ge~~~~~ip~~~~~g~~~-~~~~~~~~i~~~~~lv~~v~l~~~~~~~  147 (626)
                      ++|.+|++|++++|.|||+++||..+ .+    +.|||+++|+|+|+|+++....
T Consensus        75 ~~L~gm~~Ge~~~v~ip~~~aYG~~~~~~----~~Ip~~~~l~f~vel~~v~~~~  125 (135)
T 2d9f_A           75 LSVPLMDVGETAMVTADSKYCYGPQGSRS----PYIPPHAALCLEVTLKTAVDRP  125 (135)
T ss_dssp             TTGGGSCTTCEEEEEECHHHHTCTTCCSS----SCCCTTCCEEEEEEEEEEESSC
T ss_pred             HHHhCCCCCCEEEEEEChhHccCcCCcCC----CccCCCCeEEEEEEEEEeecCC
Confidence            99999999999999999999999987 43    6799999999999999997544

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*

Probab=99.85  E-value=6.1e-21  Score=183.56  Aligned_cols=113  Identities=26%  Similarity=0.439  Sum_probs=105.0

Q ss_pred             cCceecCCceEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCC
Q 006908           22 RRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK  101 (626)
Q Consensus        22 ~~~~~~~~gv~~~i~~~G~G~~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~  101 (626)
                      ...+++++|+.|+++++|+|.. |..||.|+|||++++.||++|++|+.    .+.|+.|.+  +++|+||+++|.+|++
T Consensus        99 ~~v~~~~sGl~y~vl~~G~G~~-p~~gD~V~V~Y~g~l~dG~vfdss~~----~g~p~~f~l--g~vI~G~eeaL~gMk~  171 (213)
T 1fd9_A           99 PGVVVLPSGLQYKVINSGNGVK-PGKSDTVTVEYTGRLIDGTVFDSTEK----TGKPATFQV--SQVIPGWTEALQLMPA  171 (213)
T ss_dssp             TTEEECTTSCEEEEEECCCSCC-CCTTCEEEEEEEEEETTSCEEEEHHH----HCSCEEEEG--GGSCHHHHHHHTTCCT
T ss_pred             CCcEECCCccEEEEEecCCCcc-CCCCCEEEEEEEEEECCCCEEeeccc----cCCCEEEEc--CchhhHHHHHHcCCCC
Confidence            4578899999999999999976 99999999999999999999999986    568999999  5899999999999999


Q ss_pred             CcEEEEEeeccccccCCCCCCCCCCCCCCCceEEEEEEeeeecc
Q 006908          102 GEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAK  145 (626)
Q Consensus       102 Ge~~~~~ip~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~~~  145 (626)
                      |++++|+|||+++||..+.+    +.|||+++|+|+|+|+++.+
T Consensus       172 Gek~~v~IP~~laYG~~g~~----~~Ipp~stLiF~VeLl~v~~  211 (213)
T 1fd9_A          172 GSTWEIYVPSGLAYGPRSVG----GPIGPNETLIFKIHLISVKK  211 (213)
T ss_dssp             TCEEEEEECGGGTTTTCCCS----SSCCTTCCEEEEEEEEEEEC
T ss_pred             CCEEEEEECchhccCccCCC----CCCCCCCeEEEEEEEEEEEc
Confidence            99999999999999998864    67999999999999999863

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A

Probab=99.85  E-value=7.7e-21  Score=166.95  Aligned_cols=113  Identities=22%  Similarity=0.327  Sum_probs=100.6

Q ss_pred             cccCceecCCceEEEEEecCCCC-CCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCC
Q 006908           20 DKRRMKIVPGSLMKAVMRPGGGD-STPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPT   98 (626)
Q Consensus        20 ~~~~~~~~~~gv~~~i~~~G~G~-~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~   98 (626)
                      +++.+++.+++++|+++++|+|. ..|+.||.|++||++++.||++|+++        .|+.|.+|.+++++||+++|.+
T Consensus         4 ~~~~~~~~~g~~~~~vl~~G~G~~~~~~~gd~V~v~y~g~~~dG~~~ds~--------~p~~f~lG~~~~i~g~e~~l~g   75 (118)
T 2awg_A            4 EEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE--------PELVFTLGDCDVIQALDLSVPL   75 (118)
T ss_dssp             TCEEESSSSSSEEEEEEECCCTTCCCCCTTSEEEEEEEEECTTSCEEEEE--------EEEEEETTSSCSCHHHHHHGGG
T ss_pred             ccceEECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEECC--------CCEEEEECCCChhHHHHHHHhC
Confidence            34555555555999999999997 35899999999999998899999964        4899999999999999999999


Q ss_pred             CCCCcEEEEEeeccccccCCCCCCCCCCCCCCCceEEEEEEeeeec
Q 006908           99 MLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA  144 (626)
Q Consensus        99 m~~Ge~~~~~ip~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~~  144 (626)
                      |++|++++|.|||+++||..+.+    +.|||+++++|+|+|+++.
T Consensus        76 m~~Ge~~~~~ip~~~ayG~~~~~----~~Ip~~~~l~f~v~l~~v~  117 (118)
T 2awg_A           76 MDVGETAMVTADSKYCYGPQGRS----PYIPPHAALCLEVTLKTAV  117 (118)
T ss_dssp             SCTTCEEEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEE
T ss_pred             CCCCCEEEEEEChHHccCCCCCC----CccCCCCeEEEEEEEEEec
Confidence            99999999999999999998875    6799999999999999874

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0

Probab=99.85  E-value=5.4e-21  Score=183.65  Aligned_cols=110  Identities=22%  Similarity=0.360  Sum_probs=102.1

Q ss_pred             ccCceecCCceEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCC
Q 006908           21 KRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTML  100 (626)
Q Consensus        21 ~~~~~~~~~gv~~~i~~~G~G~~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~  100 (626)
                      ..+.+++++||+|+++++|+|.. |..||.|+|||++++.||++|+|| .      .|+.|.+|  ++|+||+++|.+|+
T Consensus       109 ~~gv~~~~sGl~y~vl~~G~G~~-p~~gd~V~V~Y~g~l~dG~vfDss-~------~P~~f~lG--~vI~G~eeaL~gMk  178 (219)
T 3oe2_A          109 KPGVKELADGILMTELTPGTGPK-PDANGRVEVRYVGRLPDGKIFDQS-T------QPQWFRLD--SVISGWTSALQNMP  178 (219)
T ss_dssp             STTCEECGGGCEEEEEECCCSCC-CCTTSEEEEEEEEECTTSCEEEEC-S------SCEEEEGG--GSCHHHHHHHTTCC
T ss_pred             CCCcEECCCCeEEEEEecCCCcc-CCCCCEEEEEEEEEECCCCEeecc-C------CcEEEEec--chhHHHHHHHhCCC
Confidence            34578899999999999999986 999999999999999999999988 3      59999996  89999999999999


Q ss_pred             CCcEEEEEeeccccccCCCCCCCCCCCCCCCceEEEEEEeeeec
Q 006908          101 KGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA  144 (626)
Q Consensus       101 ~Ge~~~~~ip~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~~  144 (626)
                      +|++++|+|||+++||..+.+    +.|||+++|+|+|+|++|+
T Consensus       179 ~Gek~~v~IPp~lAYG~~g~~----~~IPpnstLvFeVeLl~Ik  218 (219)
T 3oe2_A          179 TGAKWRLVIPSDQAYGAEGAG----DLIDPFTPLVFEIELIAVS  218 (219)
T ss_dssp             TTCEEEEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEE
T ss_pred             CCCEEEEEECchhcCCCCCCC----CCCCCCCeEEEEEEEEEEe
Confidence            999999999999999999874    6799999999999999985

>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}

Probab=99.85  E-value=1.6e-21  Score=178.91  Aligned_cols=88  Identities=23%  Similarity=0.381  Sum_probs=81.9

Q ss_pred             eecCCceEEEEEecCCCCC-CCCCCCEEEEEEEEEEcC--CcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCC
Q 006908           25 KIVPGSLMKAVMRPGGGDS-TPSDGDQVAYHCTVRTLD--GVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK  101 (626)
Q Consensus        25 ~~~~~gv~~~i~~~G~G~~-~p~~gd~V~v~y~~~~~d--G~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~  101 (626)
                      +++++||.|+++++|+|.. .+..||.|+|||++++.|  |++||||++    ++.|+.|.||.+++|+||+++|.+|++
T Consensus         6 ~~~~~Gv~~~vl~~G~G~~p~~~~G~~V~vhY~g~l~d~~G~~FDsS~~----rg~P~~f~lG~g~vI~Gwd~gl~~M~~   81 (165)
T 2lkn_A            6 RLREDGIQKRVIQEGRGELPDFQDGTKATFHYRTLHSDDEGTVLDDSRA----RGKPMELIIGKKFKLPVWETIVCTMRE   81 (165)
T ss_dssp             HHHTTSCCCCEEECCSSCCCCCCTTCEEEEECEEECSSSSCCEEEESTT----TTCCEEEESSSSCSCSHHHHHHTTCCT
T ss_pred             cccCCCeEEEEEECCcCCCCCCCCCCEEEEEEEEEEeCCCccEEEeccc----CCCCEEEEecCCCccHHHHHHHhcCcc
Confidence            5789999999999999975 235799999999999854  999999997    789999999999999999999999999


Q ss_pred             CcEEEEEeecccccc
Q 006908          102 GEVSMFKMKPQMHYG  116 (626)
Q Consensus       102 Ge~~~~~ip~~~~~g  116 (626)
                      |++++|+|||+++||
T Consensus        82 Ge~~~~~ipp~laYG   96 (165)
T 2lkn_A           82 GEIAQFLCDIKHVVL   96 (165)
T ss_dssp             TCEEEEECCHHHHSS
T ss_pred             CceEEEEECHHHhcC
Confidence            999999999999998

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.85  E-value=4.6e-21  Score=177.68  Aligned_cols=154  Identities=22%  Similarity=0.412  Sum_probs=129.7

Q ss_pred             hhhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccC----CCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHH
Q 006908          391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV----NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS  466 (626)
Q Consensus       391 ~~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~----~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A  466 (626)
                      .+++++.+..+++.|+.+|+.|+|.+|+..|++|+..+...    .|.+ ++...+......+|+|+|.||+++|+|.+|
T Consensus         4 ~~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~nla~~~~~~~~~~~A   82 (162)
T 3rkv_A            4 EDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGE-PEWVELDRKNIPLYANMSQCYLNIGDLHEA   82 (162)
T ss_dssp             ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTS-HHHHHHHHTHHHHHHHHHHHHHHHTCHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCH-HHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            35678899999999999999999999999999999965432    2333 334455677788999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Q 006908          467 IEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFD  545 (626)
Q Consensus       467 ~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  545 (626)
                      +.+|.++|.++|.++++||++|.+|..+|+|++|+.+|++|++++|++...++..|..+...++++.+++++.|++||+
T Consensus        83 ~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~  161 (162)
T 3rkv_A           83 EETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADSRVTYSKMFQ  161 (162)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSSCC-------
T ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999984488999999999999999999999999996

>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}

Probab=99.84  E-value=2e-21  Score=178.39  Aligned_cols=119  Identities=24%  Similarity=0.377  Sum_probs=98.0

Q ss_pred             cCCCcEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeeccCCCCCCEEEEcCCCcchhhHHHHhhcCCCC
Q 006908          264 LGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPG  343 (626)
Q Consensus       264 ~~dg~v~k~il~~G~G~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~dt~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~G  343 (626)
                      +.+.+|+|+++++|.|..|.  +..|++|+|||+|++.|.+|++| ||+.+ +++|+.|.+|.++||+||+.+|.+|++|
T Consensus         7 ~~~~Gv~~~vl~~G~G~~p~--~~~G~~V~vhY~g~l~d~~G~~F-DsS~~-rg~P~~f~lG~g~vI~Gwd~gl~~M~~G   82 (165)
T 2lkn_A            7 LREDGIQKRVIQEGRGELPD--FQDGTKATFHYRTLHSDDEGTVL-DDSRA-RGKPMELIIGKKFKLPVWETIVCTMREG   82 (165)
T ss_dssp             HHTTSCCCCEEECCSSCCCC--CCTTCEEEEECEEECSSSSCCEE-EESTT-TTCCEEEESSSSCSCSHHHHHHTTCCTT
T ss_pred             ccCCCeEEEEEECCcCCCCC--CCCCCEEEEEEEEEEeCCCccEE-Eeccc-CCCCEEEEecCCCccHHHHHHHhcCccC
Confidence            35678999999999998652  25799999999999988779999 55555 6899999999999999999999999999


Q ss_pred             CEEEEEecCCCcccc--------CCCCCCC-----------------------------CCCcceeeeeeecccccCCCC
Q 006908          344 EIALVTCPPDYAYDK--------FLRPANV-----------------------------PEGAHIQWEIELLGFEKPKDW  386 (626)
Q Consensus       344 E~~~~~i~~~~ayg~--------~~~~~~i-----------------------------p~~~~l~~~vel~~~~~~~~~  386 (626)
                      |++.|+|||++|||.        ......+                             ++.++|+|+|||++|+.|.++
T Consensus        83 e~~~~~ipp~laYG~p~v~~~~r~~~~~~~p~~~~~~~~g~~~~~~~~~~g~~d~~~li~~p~~L~FeIELl~Ve~P~ey  162 (165)
T 2lkn_A           83 EIAQFLCDIKHVVLYPLVAKSLRNIAVGKDPLEGQRHCCGVAQMREHSSLGHADLDALQQNPQPLIFHMEMLKVESPGTY  162 (165)
T ss_dssp             CEEEEECCHHHHSSHHHHHHHHTTGGGSSTTTTTCSCCSSCCSCCCCCCCCCSTTTHHHHSCCCCEEEEEEEEEECTTTC
T ss_pred             ceEEEEECHHHhcCCcchhhhhhhccccCCCccccccceeeeeccccccccccccccccCCCCCeEEEEEEEEEcCCccc
Confidence            999999999999992        1111112                             223679999999999988754

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A

Probab=99.84  E-value=2.3e-20  Score=169.51  Aligned_cols=108  Identities=31%  Similarity=0.461  Sum_probs=101.4

Q ss_pred             ccccEEEEEeecCCCcCCCCCCCeEEEEEEEEeCCCcEEEecC-CCccEEEEcCCCCccchHHHhhccCCCCcEEEEEEe
Q 006908          151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT  229 (626)
Q Consensus       151 ~D~~v~~~i~~~G~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~  229 (626)
                      .|.++++.++++|.|...|..||.|+|||++++.||++|+++. ++.|+.|.+|.+++|+||+++|.+|++|++++|.||
T Consensus        33 ~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v~ip  112 (144)
T 3o5e_A           33 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCK  112 (144)
T ss_dssp             CSSSEEEEEEECCBSSCCCCTTCEEEEEEEEECTTSCEEEESGGGTSCEEEETTSSSSCHHHHHHHTTCCBTCEEEEEEC
T ss_pred             CCCeEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEeecccCCCeEEEeCCCcccHHHHHHHhCCCCCCEEEEEEC
Confidence            7899999999999996689999999999999999999999885 578999999999999999999999999999999999


Q ss_pred             CCccCCCCCC-CCCCCcceEEEEEEEeeEE
Q 006908          230 SQYLTPSPLM-PVVEGCEEVHFEVELVHLI  258 (626)
Q Consensus       230 ~~~~~g~~~~-~~ip~~~~l~~~v~l~~~~  258 (626)
                      |+++||..+. +.||++++|+|+|+|+++.
T Consensus       113 p~~aYG~~g~~~~Ipp~~~L~f~VeL~~ik  142 (144)
T 3o5e_A          113 PEYAYGSAGSLPKIPSNATLFFEIELLDFK  142 (144)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             hHHCcCCCCCCCCcCCCCeEEEEEEEEEec
Confidence            9999998654 6899999999999999985

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A

Probab=99.83  E-value=3.1e-20  Score=165.41  Aligned_cols=109  Identities=30%  Similarity=0.455  Sum_probs=101.5

Q ss_pred             cccccEEEEEeecCCCcCCCCCCCeEEEEEEEEeCCCcEEEecC-CCccEEEEcCCCCccchHHHhhccCCCCcEEEEEE
Q 006908          150 ADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYV  228 (626)
Q Consensus       150 ~~D~~v~~~i~~~G~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v  228 (626)
                      ..|.++.+.++++|.|...|+.||.|+|||++++.||++|+++. ++.|+.|.+|.+++++||+++|.+|++|++++|.|
T Consensus        16 ~~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v~i   95 (128)
T 3o5q_A           16 KKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLC   95 (128)
T ss_dssp             SCSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEE
T ss_pred             cCCCCEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEECCCCccHHHHHHHhcCCCCCEEEEEE
Confidence            37889999999999996689999999999999999999999885 47899999999999999999999999999999999


Q ss_pred             eCCccCCCCCC-CCCCCcceEEEEEEEeeEE
Q 006908          229 TSQYLTPSPLM-PVVEGCEEVHFEVELVHLI  258 (626)
Q Consensus       229 ~~~~~~g~~~~-~~ip~~~~l~~~v~l~~~~  258 (626)
                      ||+++||..+. +.||++++|+|+|+|+++.
T Consensus        96 p~~~aYG~~g~~~~Ip~~~~l~f~vel~~i~  126 (128)
T 3o5q_A           96 KPEYAYGSAGSLPKIPSNATLFFEIELLDFK  126 (128)
T ss_dssp             CGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             ChHHcCCCCCCCCCcCCCCEEEEEEEEEEec
Confidence            99999998654 6899999999999999985

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}

Probab=99.83  E-value=4.3e-20  Score=164.00  Aligned_cols=110  Identities=18%  Similarity=0.219  Sum_probs=101.8

Q ss_pred             ccccccEEEEEeecCCC-cCCCCCCCeEEEEEEEEeC-CCcEEEecC---CCccEEEEcCCCCccchHHHhhccCCCCcE
Q 006908          149 IADDFGVVKKVINEGQG-WETPRAPYEVKAWISAKTG-DGKLILSHR---EGEPYFFTFGKSEVPKGLEMGIGTMTREEK  223 (626)
Q Consensus       149 v~~D~~v~~~i~~~G~g-~~~~~~g~~V~v~y~~~~~-~g~~~~s~~---~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~  223 (626)
                      ...+.++.++++++|.+ ...|+.||.|+|||++++. ||++|+++.   .+.|+.|.+|.+++++||+++|.+|++|++
T Consensus         8 ~~~~~gl~~~~l~~g~~~g~~~~~gd~V~v~Y~g~~~~dG~~fdss~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge~   87 (125)
T 4dip_A            8 LIPEPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEK   87 (125)
T ss_dssp             GCCCCCCEEEEEECCSCCSCCCCTTCEEEEEEEEEETTTCCEEEEHHHHTTTCCEEEETTSCSSCHHHHHHSTTCCTTCE
T ss_pred             EECCCCeEEEEEEcCCCCCCcCCCCCEEEEEEEEEECCCCcEEEEcccCCCCcCEEEEeCCCChhHHHHHHHhCCCCCCE
Confidence            34677999999999983 2899999999999999998 999999885   579999999999999999999999999999


Q ss_pred             EEEEEeCCccCCCCCCCCCCCcceEEEEEEEeeEE
Q 006908          224 AVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLI  258 (626)
Q Consensus       224 ~~~~v~~~~~~g~~~~~~ip~~~~l~~~v~l~~~~  258 (626)
                      ++|.|||+++||..+.+.||++++|+|+|+|+++.
T Consensus        88 ~~~~ip~~~aYG~~g~~~Ip~~~~l~f~vel~~i~  122 (125)
T 4dip_A           88 RKLIIPPALGYGKEGKGKIPPESTLIFNIDLLEIR  122 (125)
T ss_dssp             EEEEECGGGTTTTTCBTTBCTTCCEEEEEEEEEEE
T ss_pred             EEEEEChHHhcCCCCCCCCCCCCeEEEEEEEEEEE
Confidence            99999999999998878999999999999999985

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A

Probab=99.83  E-value=3.9e-20  Score=179.16  Aligned_cols=110  Identities=25%  Similarity=0.545  Sum_probs=102.2

Q ss_pred             cCceecCCceEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCC
Q 006908           22 RRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK  101 (626)
Q Consensus        22 ~~~~~~~~gv~~~i~~~G~G~~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~  101 (626)
                      ...+++++|+.|+++++|+|.. |..||.|+|||++++.||++|+||+.    .+.|+.|.+  +++|+||+++|.+|++
T Consensus       114 ~~v~~~~sGl~y~vl~~G~G~~-p~~gD~V~V~Y~g~l~dG~vfdss~~----~g~p~~f~l--g~vI~G~eeaL~gMk~  186 (224)
T 1q6h_A          114 KGVKTSSTGLVYQVVEAGKGEA-PKDSDTVVVNYKGTLIDGKEFDNSYT----RGEPLSFRL--DGVIPGWTEGLKNIKK  186 (224)
T ss_dssp             TTEEECTTSCEEEEEECCSSCC-CCTTCEEEEEEEEEETTSCEEEEGGG----GTSCEEEEG--GGSCHHHHHHGGGSCT
T ss_pred             CCeEECCCceEEEEEecccCcc-ccCCCEEEEEEEEEeCCCCEEeeccc----cCCCEEEEc--CCcchhHHHHHcCCCC
Confidence            4567789999999999999986 99999999999999999999999986    668999999  5899999999999999


Q ss_pred             CcEEEEEeeccccccCCCCCCCCCCCCCCCceEEEEEEeeee
Q 006908          102 GEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF  143 (626)
Q Consensus       102 Ge~~~~~ip~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~  143 (626)
                      |++++|+|||+++||..+.+    + ||||++|+|+|+|+++
T Consensus       187 Gek~~v~IP~~laYG~~g~~----~-IPp~stLiF~VeL~~i  223 (224)
T 1q6h_A          187 GGKIKLVIPPELAYGKAGVP----G-IPPNSTLVFDVELLDV  223 (224)
T ss_dssp             TCEEEEEECGGGTTTTTCBT----T-BCTTCCEEEEEEEEEE
T ss_pred             CCEEEEEECchhhcCcCCCC----C-CCCCCEEEEEEEEEEe
Confidence            99999999999999998863    4 9999999999999987

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}

Probab=99.83  E-value=4.2e-20  Score=173.87  Aligned_cols=126  Identities=29%  Similarity=0.434  Sum_probs=100.6

Q ss_pred             CCcEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeeccCCCCCCEEEEcCCC-cchhhHHHHhhcCCCCC
Q 006908          266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEG-LVPEGFEMCVRLMLPGE  344 (626)
Q Consensus       266 dg~v~k~il~~G~G~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~dt~~~~~~~p~~f~lG~~-~v~~gle~~l~~M~~GE  344 (626)
                      +++|.++++++|.|..    |..|+.|+|||++++.+ +|++|+ +++. +++|+.|.+|.+ .+++||+.+|.+|++||
T Consensus        48 ~~gl~~~vl~~G~G~~----~~~Gd~V~v~Y~g~l~~-dG~~fd-ss~~-~~~p~~f~lG~g~~vi~G~eeaL~gMk~Ge  120 (180)
T 2f4e_A           48 DEKVSKQIIKEGHGSK----PSKYSTCFLHYRAWTKN-SQHKFE-DTWH-EQQPIELVLGKEKKELAGLAIGVASMKSGE  120 (180)
T ss_dssp             ETTEEEEEEECCBSCC----BCTTCEEEEEEEEEETT-TCCEEE-ETTT-TTCCEEEETTSCCGGGHHHHHHHTTCCBTC
T ss_pred             CCceEEEEEeCCCCCC----CCCCCEEEEEEEEEECC-CCcEEe-ccCc-cCCCEEEEeCCCCchhHHHHHHHhCCCCCC
Confidence            3679999999999975    47899999999999874 488884 4444 478999999999 99999999999999999


Q ss_pred             EEEEEecCCCccccCCC--CCCCCCCcceeeeeeecccccCCC---CCCCChhhHHHHH
Q 006908          345 IALVTCPPDYAYDKFLR--PANVPEGAHIQWEIELLGFEKPKD---WTGLSFDGIMDEA  398 (626)
Q Consensus       345 ~~~~~i~~~~ayg~~~~--~~~ip~~~~l~~~vel~~~~~~~~---~~~~~~~e~~~~a  398 (626)
                      ++.|+|||+++||..+.  ++.||++++++|+|+|+++..+.+   .|.|+.++++..|
T Consensus       121 ~~~v~iPp~~aYG~~g~~~~~~Ip~~s~l~F~VeL~~v~~~~e~~~~~~mt~eErl~~A  179 (180)
T 2f4e_A          121 RALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAA  179 (180)
T ss_dssp             EEEEEECGGGTTTTTCBSSSSCBCTTCCEEEEEEEEEESCBCCC---------------
T ss_pred             EEEEEECchHhCCcCCcccCCCcCCCCeEEEEEEEEEEecCccccccccCCHHHHHhhc
Confidence            99999999999999886  467999999999999999998776   7889999998876

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1

Probab=99.82  E-value=1.2e-19  Score=158.08  Aligned_cols=106  Identities=23%  Similarity=0.323  Sum_probs=97.5

Q ss_pred             cccEEEEEeecCCCcCCCCCCCeEEEEEEEEeCCCcEEEecCC-CccEEEEcCCCCccchHHHhhccCCCCcEEEEEEeC
Q 006908          152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTS  230 (626)
Q Consensus       152 D~~v~~~i~~~G~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~~  230 (626)
                      +.|+.++++++|.|...|+.||.|++||++++.||++|+++.. +.|+.|.+|.+++++||+++|.+|++|++++|.|||
T Consensus         5 ~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~v~ip~   84 (113)
T 1yat_A            5 EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTIPG   84 (113)
T ss_dssp             GGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEESTTTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEEEECG
T ss_pred             CCCeEEEEEECCCCcccCCCCCEEEEEEEEEECCCCEEEecCCCCCcEEEEeCCCCccHHHHHHHhCCCCCCEEEEEECH
Confidence            5689999999999944499999999999999999999998864 689999999999999999999999999999999999


Q ss_pred             CccCCCCC-CCCCCCcceEEEEEEEeeE
Q 006908          231 QYLTPSPL-MPVVEGCEEVHFEVELVHL  257 (626)
Q Consensus       231 ~~~~g~~~-~~~ip~~~~l~~~v~l~~~  257 (626)
                      +++||..+ .+.||++++|+|+|+|+++
T Consensus        85 ~~ayG~~~~~~~Ip~~~~l~f~vel~~i  112 (113)
T 1yat_A           85 PYAYGPRGFPGLIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             GGTTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred             HHCcCCCCCCCCcCCCCeEEEEEEEEEe
Confidence            99999865 3569999999999999986

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...

Probab=99.82  E-value=1.1e-19  Score=156.81  Aligned_cols=104  Identities=27%  Similarity=0.439  Sum_probs=95.7

Q ss_pred             cEEEEEeecCCCcCCCCCCCeEEEEEEEEeCCCcEEEecC-CCccEEEEcCCCCccchHHHhhccCCCCcEEEEEEeCCc
Q 006908          154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQY  232 (626)
Q Consensus       154 ~v~~~i~~~G~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~~~~  232 (626)
                      |+.++++++|.|...|+.||.|++||++++.||++|+++. ++.|+.|.+|.+++++||+++|.+|++|++++|.|||++
T Consensus         1 Gl~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~~~ip~~~   80 (107)
T 2ppn_A            1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY   80 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECGGG
T ss_pred             CcEEEEEECcCCCcCCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCChHHHHHHHHhCCCCCCEEEEEECHHH
Confidence            5789999999995559999999999999999999999885 368999999999999999999999999999999999999


Q ss_pred             cCCCCCC-CCCCCcceEEEEEEEeeE
Q 006908          233 LTPSPLM-PVVEGCEEVHFEVELVHL  257 (626)
Q Consensus       233 ~~g~~~~-~~ip~~~~l~~~v~l~~~  257 (626)
                      +||..+. +.||++++++|+|+|+++
T Consensus        81 ayG~~~~~~~Ip~~~~l~f~v~l~~v  106 (107)
T 2ppn_A           81 AYGATGHPGIIPPHATLVFDVELLKL  106 (107)
T ss_dssp             TTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred             ccCCCCCCCCcCCCCeEEEEEEEEEe
Confidence            9998653 569999999999999986

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*

Probab=99.82  E-value=1.2e-19  Score=162.18  Aligned_cols=108  Identities=23%  Similarity=0.321  Sum_probs=99.4

Q ss_pred             ccccccEEEEEeecCCCcCCCCCCCeEEEEEEEEeCCCcEEEecC-CCccEEEEcCCCCccchHHHhhccCCCCcEEEEE
Q 006908          149 IADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIY  227 (626)
Q Consensus       149 v~~D~~v~~~i~~~G~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~  227 (626)
                      ...+.++.+.++++|.| ..|+.||.|+|||++++.||++|+++. ++.|+.|.+|.+++++||+++|.+|++||+++|.
T Consensus        24 ~~~~~gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~eeaL~gmk~Ge~~~v~  102 (133)
T 2y78_A           24 VTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLT  102 (133)
T ss_dssp             EECTTSCEEEEEECCSS-CBCCTTSEEEEEEEEEETTSCEEEETTTTTCCEEEETTSSSSCHHHHHHSTTCBTTCEEEEE
T ss_pred             EECCCCEEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEeccCcCCCCEEEEeCCCChhHHHHHHHcCCCCCCEEEEE
Confidence            34677999999999999 889999999999999999999999886 4699999999999999999999999999999999


Q ss_pred             EeCCccCCCCCC-CCCCCcceEEEEEEEeeE
Q 006908          228 VTSQYLTPSPLM-PVVEGCEEVHFEVELVHL  257 (626)
Q Consensus       228 v~~~~~~g~~~~-~~ip~~~~l~~~v~l~~~  257 (626)
                      |||+++||..+. +.||++++|+|+|+|+++
T Consensus       103 ip~~~aYG~~~~~~~Ipp~~~l~f~VeL~~I  133 (133)
T 2y78_A          103 IPPQLGYGARGAGGVIPPNATLVFEVELLDV  133 (133)
T ss_dssp             ECGGGTTTTTCBTTTBCTTCCEEEEEEEEEC
T ss_pred             ECcHHhCCCCCCCCCCCCCCeEEEEEEEEEC
Confidence            999999998765 459999999999999874

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0

Probab=99.81  E-value=1.6e-19  Score=173.50  Aligned_cols=104  Identities=19%  Similarity=0.284  Sum_probs=97.9

Q ss_pred             cccccEEEEEeecCCCcCCCCCCCeEEEEEEEEeCCCcEEEecCCCccEEEEcCCCCccchHHHhhccCCCCcEEEEEEe
Q 006908          150 ADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT  229 (626)
Q Consensus       150 ~~D~~v~~~i~~~G~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~  229 (626)
                      +.++|+.++++++|+| ..|..||.|+|||++++.||++|+|+  +.|+.|.+|  ++||||+++|.+|++|++++|+||
T Consensus       114 ~~~sGl~y~vl~~G~G-~~p~~gd~V~V~Y~g~l~dG~vfDss--~~P~~f~lG--~vI~G~eeaL~gMk~Gek~~v~IP  188 (219)
T 3oe2_A          114 ELADGILMTELTPGTG-PKPDANGRVEVRYVGRLPDGKIFDQS--TQPQWFRLD--SVISGWTSALQNMPTGAKWRLVIP  188 (219)
T ss_dssp             ECGGGCEEEEEECCCS-CCCCTTSEEEEEEEEECTTSCEEEEC--SSCEEEEGG--GSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             ECCCCeEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEeecc--CCcEEEEec--chhHHHHHHHhCCCCCCEEEEEEC
Confidence            4678999999999999 78999999999999999999999998  799999997  899999999999999999999999


Q ss_pred             CCccCCCCCCC-CCCCcceEEEEEEEeeEE
Q 006908          230 SQYLTPSPLMP-VVEGCEEVHFEVELVHLI  258 (626)
Q Consensus       230 ~~~~~g~~~~~-~ip~~~~l~~~v~l~~~~  258 (626)
                      |+++||..+.+ .|||+++|+|+|+|+++.
T Consensus       189 p~lAYG~~g~~~~IPpnstLvFeVeLl~Ik  218 (219)
T 3oe2_A          189 SDQAYGAEGAGDLIDPFTPLVFEIELIAVS  218 (219)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             chhcCCCCCCCCCCCCCCeEEEEEEEEEEe
Confidence            99999988765 499999999999999985

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A

Probab=99.80  E-value=5.2e-19  Score=157.86  Aligned_cols=110  Identities=26%  Similarity=0.431  Sum_probs=98.5

Q ss_pred             cccccEEEEEeecC-CC-cCCCCCCCeEEEEEEEEe-CCCcEEEecC-CCccEEEEcCCCCccchHHHhhccCCCCcEEE
Q 006908          150 ADDFGVVKKVINEG-QG-WETPRAPYEVKAWISAKT-GDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAV  225 (626)
Q Consensus       150 ~~D~~v~~~i~~~G-~g-~~~~~~g~~V~v~y~~~~-~~g~~~~s~~-~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~  225 (626)
                      +.++.+.+.++++| .| ...|+.||.|+|||++++ .+|++|+++. .+.|+.|.+|.+++++||+++|.+|++|++++
T Consensus        13 ~~~g~~~~~il~~G~~g~g~~~~~gd~V~v~Y~g~~~~dG~~fd~s~~~~~p~~f~lG~g~~i~g~e~~l~gm~~Ge~~~   92 (129)
T 2vn1_A           13 TADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKCL   92 (129)
T ss_dssp             STTSSEEEEEEECCCCSGGGSCCTTCEEEEEEEEEETTTCCEEEEGGGTTCCEEEETTSSSSCHHHHHHHTTCCTTCEEE
T ss_pred             CCCCCEEEEEEeCCCCCCCCcCCCCCEEEEEEEEEECCCCeEEEecCCCCccEEEEeCCCCcCHHHHHHHhCCCCCCEEE
Confidence            35666778899987 55 488999999999999998 7999999886 46899999999999999999999999999999


Q ss_pred             EEEeCCccCCCCCC-CCCCCcceEEEEEEEeeEEe
Q 006908          226 IYVTSQYLTPSPLM-PVVEGCEEVHFEVELVHLIQ  259 (626)
Q Consensus       226 ~~v~~~~~~g~~~~-~~ip~~~~l~~~v~l~~~~~  259 (626)
                      |.|||+++||..+. +.||++++|+|+|+|+++.+
T Consensus        93 v~ip~~~aYG~~~~~~~Ip~~~~l~f~vel~~v~~  127 (129)
T 2vn1_A           93 VRIESMYGYGDEGCGESIPGNSVLLFEIELLSFRE  127 (129)
T ss_dssp             EEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred             EEEChHHcCCCCCCCCCcCCCCeEEEEEEEEEEec
Confidence            99999999998654 56999999999999999864

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}

Probab=99.80  E-value=9e-20  Score=163.61  Aligned_cols=109  Identities=27%  Similarity=0.333  Sum_probs=94.2

Q ss_pred             cccccccEEEEEeecCCCcCCCCCCCeEEEEEEEEeC-CCcEEEecC-CCccEEEEcCCCCccchHHHhhccCCCCcEEE
Q 006908          148 IIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTG-DGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAV  225 (626)
Q Consensus       148 ~v~~D~~v~~~i~~~G~g~~~~~~g~~V~v~y~~~~~-~g~~~~s~~-~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~  225 (626)
                      +++.+.++.++++++|.| ..+..||.|+|||++++. +|++|+++. ++.|+.|.+|.+++++||++||.+|++|++++
T Consensus        21 ~v~~~~gl~~~vl~~G~g-~~~~~gd~V~v~Y~g~l~~~G~~fdss~~~~~p~~f~lG~g~~i~G~e~aL~gm~~Ge~~~   99 (134)
T 3b7x_A           21 DISGDRGVLKDVIREGAG-DLVAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDITLWGMELGLLSMRRGELAR   99 (134)
T ss_dssp             ESSSSSSEEEEEEECCEE-EECCTTCEEEEEEEEECTTCSSCSEEC-------CEEC-CCCCCHHHHHHHHTCEETCEEE
T ss_pred             eeeCCCCEEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCeEEEecCCCCCCEEEEcCCcchhHHHHHHHhCCCCCCEEE
Confidence            455788999999999999 678889999999999987 699999885 46899999999999999999999999999999


Q ss_pred             EEEeCCccCCCCCC-CCCCCcceEEEEEEEeeE
Q 006908          226 IYVTSQYLTPSPLM-PVVEGCEEVHFEVELVHL  257 (626)
Q Consensus       226 ~~v~~~~~~g~~~~-~~ip~~~~l~~~v~l~~~  257 (626)
                      |.|||+++||..+. +.||++++|+|+|+|+++
T Consensus       100 v~ip~~~aYG~~~~~~~Ip~~~~l~f~VeL~~i  132 (134)
T 3b7x_A          100 FLFKPNYAYGTLGCPPLIPPNTTVLFEIELLDF  132 (134)
T ss_dssp             EEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred             EEECHHHCcCCCCCCCCcCcCCeEEEEEEEEEE
Confidence            99999999998654 569999999999999997

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.80  E-value=4.6e-19  Score=151.45  Aligned_cols=96  Identities=25%  Similarity=0.476  Sum_probs=88.8

Q ss_pred             CCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCCCcEEEEEeeccccccCCCCCC
Q 006908           43 STPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPV  122 (626)
Q Consensus        43 ~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge~~~~~ip~~~~~g~~~~~~  122 (626)
                      ..|+.||.|+|||++++.||++|++|+.    .+.|+.|.+|.+++++||+++|.+|++|++++|.|||+++||..+.+ 
T Consensus         4 ~~~~~gd~V~v~y~~~~~dG~~~d~s~~----~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~v~ip~~~ayG~~~~~-   78 (102)
T 2pbc_A            4 IKSRKGDVLHMHYTGKLEDGTEFDSSLP----QNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAP-   78 (102)
T ss_dssp             CCCCTTCEEEEEEEEECTTSCEEEESTT----TTCCEEEETTSSSSCHHHHTTSTTCCTTCEEEEEECGGGTTTTTCBT-
T ss_pred             CcCCCCCEEEEEEEEEECCCCEEEeCCC----CCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEEECHHHCcCCCCCC-
Confidence            3489999999999999889999999986    56899999999999999999999999999999999999999998874 


Q ss_pred             CCCCCCCCCceEEEEEEeeeeccc
Q 006908          123 AAPSTFPKDEELHFEIEMIDFAKA  146 (626)
Q Consensus       123 ~~~~~i~~~~~lv~~v~l~~~~~~  146 (626)
                         +.||++++++|+|+|+++.+.
T Consensus        79 ---~~Ip~~~~l~f~v~l~~v~~~   99 (102)
T 2pbc_A           79 ---PKIPGGATLVFEVELLKIERR   99 (102)
T ss_dssp             ---TTBCTTCCEEEEEEEEEEGGG
T ss_pred             ---CCcCcCCeEEEEEEEEEeccc
Confidence               679999999999999999754

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}

Probab=99.79  E-value=5.7e-19  Score=161.66  Aligned_cols=107  Identities=19%  Similarity=0.250  Sum_probs=96.8

Q ss_pred             ccccEEEEEeecCCCc-CCCCCCCeEEEEEEEEeCCCcEEEecCCCccEEEEcCCCCccchHHHhhccCCCCcEEEEEEe
Q 006908          151 DDFGVVKKVINEGQGW-ETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT  229 (626)
Q Consensus       151 ~D~~v~~~i~~~G~g~-~~~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~  229 (626)
                      .++.+.++++++|.|. ..|+.||.|+|||++++.||++|+|+   .|+.|.+|.+++|+||+++|.+|++|++++|+||
T Consensus        41 ~sG~v~~~vl~~G~G~~~~p~~gd~V~v~Y~g~l~dG~~fds~---~p~~f~lG~g~vi~G~eeaL~gMk~Ge~~~v~IP  117 (157)
T 2jwx_A           41 GNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE---PELVFTLGDCDVIQALDLSVPLMDVGETAMVTAD  117 (157)
T ss_dssp             SSSSEEEEEEECCSTTSCCCCTTEEEEEEEEEECTTSCEEEEE---EEEEEETTTTSSCHHHHHHTTTSCTTCEEEEEEC
T ss_pred             CCCCEEEEEEEccCCCccCCCCCCEEEEEEEEEECCCCEeecC---CCEEEEeCCCChhHHHHHHHcCCCCCCEEEEEEC
Confidence            3444689999999992 38999999999999999999999984   8999999999999999999999999999999999


Q ss_pred             CCccCCCCC-C-CCCCCcceEEEEEEEeeEEee
Q 006908          230 SQYLTPSPL-M-PVVEGCEEVHFEVELVHLIQV  260 (626)
Q Consensus       230 ~~~~~g~~~-~-~~ip~~~~l~~~v~l~~~~~~  260 (626)
                      |+++||..+ . +.||++++|+|+|+|+++...
T Consensus       118 ~~~aYG~~g~~~~~IPp~stLiF~VeL~~i~~~  150 (157)
T 2jwx_A          118 SKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDL  150 (157)
T ss_dssp             GGGTTTTTCCSSSCCCTTCCEEEEEEEEEEEEC
T ss_pred             chhcCCcccccCCCcCCCCeEEEEEEEEEEEcc
Confidence            999999876 3 579999999999999998654

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}

Probab=99.79  E-value=4.2e-19  Score=158.21  Aligned_cols=107  Identities=33%  Similarity=0.471  Sum_probs=95.8

Q ss_pred             ccccEEEE--EeecCCCcCCCCCCCeEEEEEEEEeCCCcEEEecCC-CccEEEEcCCCCccchHHHhhccCCCCcEEEEE
Q 006908          151 DDFGVVKK--VINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIY  227 (626)
Q Consensus       151 ~D~~v~~~--i~~~G~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~  227 (626)
                      .++|+.+.  ++++|.|...|+.||.|+|||++++.||++|+++.. +.|+.|.+|.+++++||+++|.+|++||+++|.
T Consensus        20 ~~~Gl~~~K~~l~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~v~   99 (130)
T 2lgo_A           20 GSMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFT   99 (130)
T ss_dssp             SSSSCCCCEEEEECCCSSCCCCTTSEEEEEEEEECTTSCEEECTTTTTCCEEEETTSTTSCHHHHHHHHHSCTTEEEEEE
T ss_pred             CCCceEEEEEEEeccCCCccCCCCCEEEEEEEEEECCCCEEEccCcCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEE
Confidence            44566666  999999954499999999999999889999998864 589999999999999999999999999999999


Q ss_pred             EeCCccCCCCCC-CCCCCcceEEEEEEEeeE
Q 006908          228 VTSQYLTPSPLM-PVVEGCEEVHFEVELVHL  257 (626)
Q Consensus       228 v~~~~~~g~~~~-~~ip~~~~l~~~v~l~~~  257 (626)
                      |||+++||..+. +.||++++|+|+|+|+++
T Consensus       100 ip~~~aYG~~~~~~~Ip~~~~l~f~VeL~~i  130 (130)
T 2lgo_A          100 IPYQLAYGERGYPPVIPPKATLVFEVELLAV  130 (130)
T ss_dssp             ECTTTSTTTTCCSTTSCSSCCEEEEEEEEEC
T ss_pred             ECcHHHCCCCCCCCCcCCCCeEEEEEEEEEC
Confidence            999999998654 569999999999999874

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=99.79  E-value=1.1e-18  Score=168.18  Aligned_cols=109  Identities=23%  Similarity=0.333  Sum_probs=100.4

Q ss_pred             cccccccEEEEEeecCCCcCCCCCCCeEEEEEEEEeCCCcEEEecC-CCccEEEEcCCCCccchHHHhhccCCCCcEEEE
Q 006908          148 IIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVI  226 (626)
Q Consensus       148 ~v~~D~~v~~~i~~~G~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~  226 (626)
                      .++.++|+.+.++++|.| ..|..||.|+|||++++.||++|+|+. .+.|+.|.+|.+++++||++||.+|++|++++|
T Consensus        99 ~~~~~sGl~~~vl~~G~G-~~~~~gd~V~v~Y~g~l~dG~~fdss~~~~~P~~f~lG~g~vi~G~eeaL~gM~~Ge~~~v  177 (209)
T 3uf8_A           99 VVTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRL  177 (209)
T ss_dssp             CEECTTSCEEEEEECCCS-CBCCTTCEEEEEEEEEETTSCEEEESGGGTCCEEEETTSSSSCHHHHHHHTTCBTTCEEEE
T ss_pred             ccCCCCceEEEEEEcCCC-CcCCCCCEEEEEEEEEECCCCEEEEccccCCCEEEEeCCCccchhHHHHHhCCCCCCEEEE
Confidence            345678999999999999 679999999999999999999999885 578999999999999999999999999999999


Q ss_pred             EEeCCccCCCCCCC-CCCCcceEEEEEEEeeE
Q 006908          227 YVTSQYLTPSPLMP-VVEGCEEVHFEVELVHL  257 (626)
Q Consensus       227 ~v~~~~~~g~~~~~-~ip~~~~l~~~v~l~~~  257 (626)
                      .|||++|||..+.+ .||++++|+|+|+|+++
T Consensus       178 ~Ipp~~aYG~~g~~~~IP~~s~LvF~VeL~~I  209 (209)
T 3uf8_A          178 TIPPQLGYGARGAAGVIPPNATLVFEVELLDV  209 (209)
T ss_dssp             EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEC
T ss_pred             EECcHHhCCCCCCCCCcCCCCeEEEEEEEEEC
Confidence            99999999987654 49999999999999874

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A

Probab=99.79  E-value=1.1e-18  Score=153.09  Aligned_cols=106  Identities=19%  Similarity=0.240  Sum_probs=96.4

Q ss_pred             cccccEEEEEeecCCCc-CCCCCCCeEEEEEEEEeCCCcEEEecCCCccEEEEcCCCCccchHHHhhccCCCCcEEEEEE
Q 006908          150 ADDFGVVKKVINEGQGW-ETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYV  228 (626)
Q Consensus       150 ~~D~~v~~~i~~~G~g~-~~~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v  228 (626)
                      ..++++.++++++|.|. ..|+.||.|+|||++++.+|++|+++   .|+.|.+|.+++++||+++|.+|++|++++|.|
T Consensus        10 ~~~g~~~~~vl~~G~G~~~~~~~gd~V~v~y~g~~~dG~~~ds~---~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~~~i   86 (118)
T 2awg_A           10 LGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE---PELVFTLGDCDVIQALDLSVPLMDVGETAMVTA   86 (118)
T ss_dssp             SSSSSEEEEEEECCCTTCCCCCTTSEEEEEEEEECTTSCEEEEE---EEEEEETTSSCSCHHHHHHGGGSCTTCEEEEEE
T ss_pred             CCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEECC---CCEEEEECCCChhHHHHHHHhCCCCCCEEEEEE
Confidence            34556999999999993 38999999999999998899999984   899999999999999999999999999999999


Q ss_pred             eCCccCCCCCC-CCCCCcceEEEEEEEeeEE
Q 006908          229 TSQYLTPSPLM-PVVEGCEEVHFEVELVHLI  258 (626)
Q Consensus       229 ~~~~~~g~~~~-~~ip~~~~l~~~v~l~~~~  258 (626)
                      ||+++||..+. +.||++++|+|+|+|+++.
T Consensus        87 p~~~ayG~~~~~~~Ip~~~~l~f~v~l~~v~  117 (118)
T 2awg_A           87 DSKYCYGPQGRSPYIPPHAALCLEVTLKTAV  117 (118)
T ss_dssp             CGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             ChHHccCCCCCCCccCCCCeEEEEEEEEEec
Confidence            99999997654 5799999999999999873

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.78  E-value=2.6e-18  Score=152.69  Aligned_cols=115  Identities=28%  Similarity=0.543  Sum_probs=107.0

Q ss_pred             HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (626)
Q Consensus       395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL  474 (626)
                      .+.++.++++|+.+|++|+|++|+..|++|+.    +.|.+           ..+|+|+|.||+++|+|.+|+.+|.++|
T Consensus        10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~~~~~~~~~~~~~~A~~~~~~al   74 (126)
T 4gco_A           10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK----RDPEN-----------AILYSNRAACLTKLMEFQRALDDCDTCI   74 (126)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHhhHHHhhccHHHHHHHHHHHH
Confidence            35688999999999999999999999999999    67766           5689999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006908          475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (626)
Q Consensus       475 ~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l  525 (626)
                      +++|+++.+|+++|.++..+|++++|+.+|++|++++|+| ..++..|..+
T Consensus        75 ~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~-~~a~~~l~~~  124 (126)
T 4gco_A           75 RLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN-EEAREGVRNC  124 (126)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred             HhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCC-HHHHHHHHHh
Confidence            9999999999999999999999999999999999999998 6777777655

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A

Probab=99.78  E-value=4.2e-19  Score=158.29  Aligned_cols=107  Identities=21%  Similarity=0.230  Sum_probs=98.6

Q ss_pred             cccccEEEEEeecCCCcCCCCCCCeEEEEEEEEeCCCcEEEecC-CCccEEEEcCCCCccchHHHhhcc------CCCCc
Q 006908          150 ADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGT------MTREE  222 (626)
Q Consensus       150 ~~D~~v~~~i~~~G~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~g~~~~gle~~l~~------mk~Ge  222 (626)
                      ..+.++.+.++++|.| ..|+.||.|+|||++++.+|++|+++. ++.|+.|.+|.+++++||+++|.+      |++|+
T Consensus         9 ~~~~Gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~~i~G~~~~L~G~~~~~~m~~Ge   87 (129)
T 1u79_A            9 VSPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGG   87 (129)
T ss_dssp             ECTTSCEEEEEECCSS-CBCCTTCEEEEEEEEECTTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCBTTC
T ss_pred             ECCCCeEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCCccHHHHHHhcccccccccCCCC
Confidence            3567899999999999 789999999999999988999999885 468999999999999999999998      99999


Q ss_pred             EEEEEEeCCccCCCCCC------CCCCCcceEEEEEEEeeE
Q 006908          223 KAVIYVTSQYLTPSPLM------PVVEGCEEVHFEVELVHL  257 (626)
Q Consensus       223 ~~~~~v~~~~~~g~~~~------~~ip~~~~l~~~v~l~~~  257 (626)
                      +++|.|||+++||..+.      +.||++++|+|+|+|+++
T Consensus        88 ~~~v~ip~~~aYG~~~~~~~~~~~~Ip~~~~l~f~vel~~i  128 (129)
T 1u79_A           88 KRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  128 (129)
T ss_dssp             EEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             EEEEEEChHHccCCCCCCccccCCcCCCCCeEEEEEEEEEe
Confidence            99999999999997654      479999999999999986

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1

Probab=99.78  E-value=8.2e-19  Score=162.47  Aligned_cols=107  Identities=21%  Similarity=0.311  Sum_probs=97.8

Q ss_pred             ccccccEEEEEeecCCCcCC-CCCCCeEEEEEEEEeCCCcEEEecC-CCccEEEEcCCCCccchHHHhhccCCCCcEEEE
Q 006908          149 IADDFGVVKKVINEGQGWET-PRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVI  226 (626)
Q Consensus       149 v~~D~~v~~~i~~~G~g~~~-~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~  226 (626)
                      ...++|+.+.++++|.| .. |..||.|+|||++++.||++|+++. ++.|+.|.+  |++|+||+++|.+|++|++++|
T Consensus        33 ~~~~sGl~~~vl~~G~G-~~~~~~gd~V~v~Y~g~l~dG~~fdss~~~g~p~~f~l--g~vI~G~eeaL~gMk~Ge~~~~  109 (167)
T 1jvw_A           33 VKLPSGLVFQRIARGSG-KRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRP--NEVIKGWTEALQLMREGDRWRL  109 (167)
T ss_dssp             EECTTSCEEEEEECCCC-SBCCCTTCCEEEEEEEECTTSCEEEEHHHHTSCEEECG--GGSCHHHHHHHTTCCTTCEEEE
T ss_pred             EECCCCEEEEEEEcCCC-CcCCCCCCEEEEEEEEEECCCCEEeeccccCCCEEEEe--CchhHHHHHHHcCCCCCCEEEE
Confidence            34677999999999999 55 9999999999999999999999885 578999999  5999999999999999999999


Q ss_pred             EEeCCccCCCCCC-CCCCCcceEEEEEEEeeEE
Q 006908          227 YVTSQYLTPSPLM-PVVEGCEEVHFEVELVHLI  258 (626)
Q Consensus       227 ~v~~~~~~g~~~~-~~ip~~~~l~~~v~l~~~~  258 (626)
                      +|||+++||..+. +.||+|++|+|+|+|+++.
T Consensus       110 ~Ip~~laYG~~g~~~~Ipp~s~LiF~VeL~~i~  142 (167)
T 1jvw_A          110 FIPYDLAYGVTGGGGMIPPYSPLEFDVELISIK  142 (167)
T ss_dssp             EECGGGTTTTTCSSSSSCTTCCEEEEEEEEEEG
T ss_pred             EECchhhCCCCCCCCCcCCCCeEEEEEEEEEEE
Confidence            9999999998754 5799999999999999985

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.78  E-value=8.5e-19  Score=157.46  Aligned_cols=109  Identities=18%  Similarity=0.225  Sum_probs=98.6

Q ss_pred             cccccEEEEEeecCCCc-CCCCCCCeEEEEEEEEeCCCcEEEecCCCccEEEEcCCCCccchHHHhhccCCCCcEEEEEE
Q 006908          150 ADDFGVVKKVINEGQGW-ETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYV  228 (626)
Q Consensus       150 ~~D~~v~~~i~~~G~g~-~~~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v  228 (626)
                      ..++++.++++++|.|. ..|+.||.|+|||++++.+|++|++   +.|+.|.+|.+++++||+++|.+|++|++++|.|
T Consensus        14 ~~~g~l~~~vl~~G~G~~~~~~~gd~V~v~Y~g~~~dG~~fds---~~p~~f~lG~g~~i~G~e~~L~gm~~Ge~~~v~i   90 (135)
T 2d9f_A           14 LGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQE---EPELVFTLGDCDVIQALDLSVPLMDVGETAMVTA   90 (135)
T ss_dssp             SSSSSSEEEEEECCCSSCCCCCTTSEEEEEEEEEESSSCEEEE---EEEEEEETTSCCSCTTTTTTGGGSCTTCEEEEEE
T ss_pred             CCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEec---CCCEEEEeCCCChhHHHHHHHhCCCCCCEEEEEE
Confidence            34556999999999993 4899999999999999999999997   3899999999999999999999999999999999


Q ss_pred             eCCccCCCCC--CCCCCCcceEEEEEEEeeEEeee
Q 006908          229 TSQYLTPSPL--MPVVEGCEEVHFEVELVHLIQVR  261 (626)
Q Consensus       229 ~~~~~~g~~~--~~~ip~~~~l~~~v~l~~~~~~~  261 (626)
                      ||+++||..+  .+.||++++|+|+|+|+++....
T Consensus        91 p~~~aYG~~~~~~~~Ip~~~~l~f~vel~~v~~~~  125 (135)
T 2d9f_A           91 DSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDRP  125 (135)
T ss_dssp             CHHHHTCTTCCSSSCCCTTCCEEEEEEEEEEESSC
T ss_pred             ChhHccCcCCcCCCccCCCCeEEEEEEEEEeecCC
Confidence            9999999765  35799999999999999997644

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.77  E-value=7.5e-19  Score=160.74  Aligned_cols=139  Identities=17%  Similarity=0.219  Sum_probs=116.8

Q ss_pred             hHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006908          393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK  472 (626)
Q Consensus       393 e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~  472 (626)
                      .....+..+++.|+.+|+.|+|++|+..|++||.+.+.. |..+  ..........+|+|+|.|+.++|+|++|+.+|++
T Consensus         6 ~~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~-~~~~--a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~k   82 (159)
T 2hr2_A            6 KEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTM-PPEE--AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADK   82 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS-CTTS--CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC-cchh--hhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            346789999999999999999999999999999954431 1110  0001223345999999999999999999999999


Q ss_pred             HHHh-------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006908          473 VLDA-------NPAHVKGL----YRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESK  535 (626)
Q Consensus       473 aL~~-------dp~~~ka~----~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~  535 (626)
                      ||++       +|+++++|    ||+|.++..+|++++|+.+|++|++++|++ ..+...+..+++.+++..++
T Consensus        83 AL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d-~~~~~~~~~~~~~~~~~~~k  155 (159)
T 2hr2_A           83 ALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER-KGETPGKERMMEVAIDRIAQ  155 (159)
T ss_dssp             HHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC-CSCCTTHHHHHHHHHHHHHH
T ss_pred             HHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHHHHHH
Confidence            9999       99999999    999999999999999999999999999987 57888888888877766543

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*

Probab=99.77  E-value=2.3e-18  Score=165.61  Aligned_cols=107  Identities=24%  Similarity=0.292  Sum_probs=98.6

Q ss_pred             ccccccEEEEEeecCCCcCCCCCCCeEEEEEEEEeCCCcEEEecC-CCccEEEEcCCCCccchHHHhhccCCCCcEEEEE
Q 006908          149 IADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIY  227 (626)
Q Consensus       149 v~~D~~v~~~i~~~G~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~  227 (626)
                      ...++|+.+.++++|.| ..|+.||.|+|||++++.||++|+++. ++.|+.|.+  +++||||+++|.+|++|++++|+
T Consensus       102 ~~~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l--g~vI~G~eeaL~gMk~Gek~~v~  178 (213)
T 1fd9_A          102 VVLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQV--SQVIPGWTEALQLMPAGSTWEIY  178 (213)
T ss_dssp             EECTTSCEEEEEECCCS-CCCCTTCEEEEEEEEEETTSCEEEEHHHHCSCEEEEG--GGSCHHHHHHHTTCCTTCEEEEE
T ss_pred             EECCCccEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEEeeccccCCCEEEEc--CchhhHHHHHHcCCCCCCEEEEE
Confidence            34667999999999999 899999999999999999999999885 479999999  58999999999999999999999


Q ss_pred             EeCCccCCCCCC-CCCCCcceEEEEEEEeeEE
Q 006908          228 VTSQYLTPSPLM-PVVEGCEEVHFEVELVHLI  258 (626)
Q Consensus       228 v~~~~~~g~~~~-~~ip~~~~l~~~v~l~~~~  258 (626)
                      |||+++||..+. +.||++++|+|+|+|+++.
T Consensus       179 IP~~laYG~~g~~~~Ipp~stLiF~VeLl~v~  210 (213)
T 1fd9_A          179 VPSGLAYGPRSVGGPIGPNETLIFKIHLISVK  210 (213)
T ss_dssp             ECGGGTTTTCCCSSSCCTTCCEEEEEEEEEEE
T ss_pred             ECchhccCccCCCCCCCCCCeEEEEEEEEEEE
Confidence            999999998764 5799999999999999985

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A

Probab=99.76  E-value=3.3e-18  Score=165.64  Aligned_cols=104  Identities=23%  Similarity=0.363  Sum_probs=97.0

Q ss_pred             ccccEEEEEeecCCCcCCCCCCCeEEEEEEEEeCCCcEEEecC-CCccEEEEcCCCCccchHHHhhccCCCCcEEEEEEe
Q 006908          151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT  229 (626)
Q Consensus       151 ~D~~v~~~i~~~G~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~  229 (626)
                      .++++.+.++++|.| ..|..||.|+|||++++.||++|+|+. ++.|+.|.+  |++||||+++|.+|++|++++|+||
T Consensus       119 ~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l--g~vI~G~eeaL~gMk~Gek~~v~IP  195 (224)
T 1q6h_A          119 SSTGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWTEGLKNIKKGGKIKLVIP  195 (224)
T ss_dssp             CTTSCEEEEEECCSS-CCCCTTCEEEEEEEEEETTSCEEEEGGGGTSCEEEEG--GGSCHHHHHHGGGSCTTCEEEEEEC
T ss_pred             CCCceEEEEEecccC-ccccCCCEEEEEEEEEeCCCCEEeeccccCCCEEEEc--CCcchhHHHHHcCCCCCCEEEEEEC
Confidence            467999999999999 789999999999999999999999885 578999999  5999999999999999999999999


Q ss_pred             CCccCCCCCCCCCCCcceEEEEEEEeeE
Q 006908          230 SQYLTPSPLMPVVEGCEEVHFEVELVHL  257 (626)
Q Consensus       230 ~~~~~g~~~~~~ip~~~~l~~~v~l~~~  257 (626)
                      |+++||..+.+.||++++|+|+|+|+++
T Consensus       196 ~~laYG~~g~~~IPp~stLiF~VeL~~i  223 (224)
T 1q6h_A          196 PELAYGKAGVPGIPPNSTLVFDVELLDV  223 (224)
T ss_dssp             GGGTTTTTCBTTBCTTCCEEEEEEEEEE
T ss_pred             chhhcCcCCCCCCCCCCEEEEEEEEEEe
Confidence            9999998776669999999999999986

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.75  E-value=3.2e-17  Score=173.40  Aligned_cols=156  Identities=26%  Similarity=0.480  Sum_probs=132.7

Q ss_pred             CChhhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCC-CCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHH
Q 006908          389 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN-PQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI  467 (626)
Q Consensus       389 ~~~~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~-p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~  467 (626)
                      .++++.+..+..++..|+.+++.|+|++|+..|++|+.++.... ..+.++..........+|+|+|.||+++++|.+|+
T Consensus       214 ~~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~  293 (370)
T 1ihg_A          214 KDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAV  293 (370)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH
Confidence            36888999999999999999999999999999999998544310 01112222345566789999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Q 006908          468 EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFD  545 (626)
Q Consensus       468 ~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  545 (626)
                      .+|.+||+++|+++++|+++|.+|..+|+|++|+.+|++|++++|++ ..++..|..+...+.+..++++..+++||+
T Consensus       294 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~-~~~~~~l~~~~~~~~~~~~a~k~~~~kmf~  370 (370)
T 1ihg_A          294 DSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED-KAIQAELLKVKQKIKAQKDKEKAAYAKMFA  370 (370)
T ss_dssp             HHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999998 789999999999999999999998898884

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.75  E-value=5e-17  Score=155.57  Aligned_cols=170  Identities=25%  Similarity=0.311  Sum_probs=131.8

Q ss_pred             eeeecccccCCCCCCCChhhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChh-----HHHHHhhhhhH
Q 006908          374 EIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE-----EGKVFVGKRNL  448 (626)
Q Consensus       374 ~vel~~~~~~~~~~~~~~~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~e-----e~~~~~~~~~~  448 (626)
                      ...+..++.....|.++.++....+..++..|+.++..|+|.+|+..|.+++..    .|.+.+     .......+...
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~~~~~~   89 (198)
T 2fbn_A           14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF----FIHTEEWDDQILLDKKKNIEIS   89 (198)
T ss_dssp             --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TTTCTTCCCHHHHHHHHHHHHH
T ss_pred             hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----HhcccccchhhHHHHHHHHHHH
Confidence            344556777777888999999999999999999999999999999999999994    333321     11112334457


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006908          449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (626)
Q Consensus       449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~  528 (626)
                      +++|+|.|++++++|.+|+.+|.+++.++|.++++++++|.++..+|++++|+..|++|++++|++ ..+...+..+...
T Consensus        90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~  168 (198)
T 2fbn_A           90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN-LDIRNSYELCVNK  168 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999998 7899999999999


Q ss_pred             HHHHHHHHHHHHHccccCCC
Q 006908          529 RQEVESKARKQFKGLFDKKP  548 (626)
Q Consensus       529 ~~~~~~~~~~~~~~~~~~~~  548 (626)
                      +.+..+.++..++++|....
T Consensus       169 ~~~~~~~~~~~~~~~f~~~~  188 (198)
T 2fbn_A          169 LKEARKKDKLTFGGMFDKGP  188 (198)
T ss_dssp             HHHHHC--------------
T ss_pred             HHHHHHHHHHHHHHHhcccc
Confidence            99888888899999998654

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.74  E-value=9.8e-18  Score=143.16  Aligned_cols=93  Identities=25%  Similarity=0.350  Sum_probs=85.8

Q ss_pred             CCCCCCCeEEEEEEEEeCCCcEEEecC-CCccEEEEcCCCCccchHHHhhccCCCCcEEEEEEeCCccCCCCCC-CCCCC
Q 006908          167 ETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLM-PVVEG  244 (626)
Q Consensus       167 ~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~~~~~~g~~~~-~~ip~  244 (626)
                      ..++.||.|+|||++++.+|++|+++. ++.|+.|.+|.+++++||+++|.+|++|++++|.|||+++||..+. +.||+
T Consensus         4 ~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~v~ip~~~ayG~~~~~~~Ip~   83 (102)
T 2pbc_A            4 IKSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAPPKIPG   83 (102)
T ss_dssp             CCCCTTCEEEEEEEEECTTSCEEEESTTTTCCEEEETTSSSSCHHHHTTSTTCCTTCEEEEEECGGGTTTTTCBTTTBCT
T ss_pred             CcCCCCCEEEEEEEEEECCCCEEEeCCCCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEEECHHHCcCCCCCCCCcCc
Confidence            678999999999999988999999886 4699999999999999999999999999999999999999997654 46999


Q ss_pred             cceEEEEEEEeeEEe
Q 006908          245 CEEVHFEVELVHLIQ  259 (626)
Q Consensus       245 ~~~l~~~v~l~~~~~  259 (626)
                      +++++|+|+|+++.+
T Consensus        84 ~~~l~f~v~l~~v~~   98 (102)
T 2pbc_A           84 GATLVFEVELLKIER   98 (102)
T ss_dssp             TCCEEEEEEEEEEGG
T ss_pred             CCeEEEEEEEEEecc
Confidence            999999999999854

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.68  E-value=2.3e-16  Score=140.14  Aligned_cols=115  Identities=21%  Similarity=0.354  Sum_probs=102.3

Q ss_pred             HHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006908          394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV  473 (626)
Q Consensus       394 ~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~a  473 (626)
                      ..+.|..+++.|+.+|++|+|++|+.+|++|+.    +.|.+           ..+|+|+|.||+++|+|.+|+.+|.++
T Consensus         4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~----~~p~~-----------~~~~~nlg~~~~~~~~~~~A~~~~~~a   68 (127)
T 4gcn_A            4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIE----LDPSN-----------ITFYNNKAAVYFEEKKFAECVQFCEKA   68 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence            456788999999999999999999999999999    67766           568999999999999999999999999


Q ss_pred             HHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006908          474 LDANPAH-------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (626)
Q Consensus       474 L~~dp~~-------~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l  525 (626)
                      |+++|++       +++|+++|.++..+++|++|+.+|++||+++|+  +++...|..+
T Consensus        69 l~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~--~~~~~~l~~l  125 (127)
T 4gcn_A           69 VEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD--PELVKKVKEL  125 (127)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC--HHHHHHHHHH
T ss_pred             HHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC--HHHHHHHHHh
Confidence            9999866       479999999999999999999999999999986  4455555444

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.64  E-value=1.8e-15  Score=133.33  Aligned_cols=116  Identities=26%  Similarity=0.405  Sum_probs=106.6

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~  476 (626)
                      .+..+...|+.+++.|+|++|+..|++++.    +.|.+           ..+|+|+|.|++++++|.+|+.+|.+++++
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   67 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIK----RAPED-----------ARGYSNRAAALAKLMSFPEAIADCNKAIEK   67 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCCCC-----------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            578899999999999999999999999999    56665           468999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHH
Q 006908          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD------KSSEPDATAALSKLKKQ  528 (626)
Q Consensus       477 dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~------P~~~~~~~~~l~~l~~~  528 (626)
                      +|+++.+|+++|.++..+|++++|+..|+++++++      |.+ ..+...+..+..+
T Consensus        68 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~-~~~~~~l~~~~~~  124 (126)
T 3upv_A           68 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA-REIDQLYYKASQQ  124 (126)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTH-HHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhH-HHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999      876 6777777777654

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}

Probab=99.60  E-value=1.5e-14  Score=133.30  Aligned_cols=84  Identities=25%  Similarity=0.398  Sum_probs=75.6

Q ss_pred             CCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCCCcEEEEEeeccccccCCCCCCC
Q 006908           44 TPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVA  123 (626)
Q Consensus        44 ~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge~~~~~ip~~~~~g~~~~~~~  123 (626)
                      .++.||.|+|||++++.||++|+||+.    .+.|+.|.+|.+++++||+++|.+|++|++++|.|||++|||..     
T Consensus        24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~----~~~P~~f~lG~g~vipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~-----   94 (169)
T 4dt4_A           24 SVQSNSAVLVHFTLKLDDGTTAESTRN----NGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVP-----   94 (169)
T ss_dssp             SCCTTCEEEEEEEEEETTSCEEEEHHH----HTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTCCC-----
T ss_pred             cCCCCCEEEEEEEEEECCCCEEEecCC----CCCCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCC-----
Confidence            378999999999999999999999986    55799999999999999999999999999999999999999976     


Q ss_pred             CCCCCCCCceEEEEEEeeee
Q 006908          124 APSTFPKDEELHFEIEMIDF  143 (626)
Q Consensus       124 ~~~~i~~~~~lv~~v~l~~~  143 (626)
                             +..+++.|....+
T Consensus        95 -------~~~lv~~vp~~~f  107 (169)
T 4dt4_A           95 -------SPDLIQYFSRREF  107 (169)
T ss_dssp             -------CGGGEEEEEGGGG
T ss_pred             -------ChHHEEEeCHHHC
Confidence                   4667777766665

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.59  E-value=1.5e-14  Score=132.73  Aligned_cols=105  Identities=11%  Similarity=0.145  Sum_probs=98.8

Q ss_pred             HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (626)
Q Consensus       395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL  474 (626)
                      ...+..+...|..+++.|+|++|+..|++++.    +.|.+           ..+|+|+|.|+.++|+|++|+.+|.+++
T Consensus        33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~----~~P~~-----------~~~~~~lg~~~~~~g~~~~Ai~~~~~al   97 (151)
T 3gyz_A           33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI----YDFYN-----------VDYIMGLAAIYQIKEQFQQAADLYAVAF   97 (151)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            34577889999999999999999999999999    67776           4589999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       475 ~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      +++|+++.+|+++|.||..+|++++|+..|++|++++|+.
T Consensus        98 ~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~  137 (151)
T 3gyz_A           98 ALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE  137 (151)
T ss_dssp             HHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred             hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence            9999999999999999999999999999999999999985

>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A

Probab=99.59  E-value=8.5e-15  Score=133.69  Aligned_cols=86  Identities=26%  Similarity=0.334  Sum_probs=72.4

Q ss_pred             CCCCCEEEEEEEEEEcCCcEEEeeccC-------C--CCCCcceEEEeCCCccchhHHhhcCCCCCCcEEEEEeeccccc
Q 006908           45 PSDGDQVAYHCTVRTLDGVIVESTRSE-------Y--GGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHY  115 (626)
Q Consensus        45 p~~gd~V~v~y~~~~~dG~~~~st~~~-------~--~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge~~~~~ip~~~~~  115 (626)
                      ++.||.|+|||++++ ||++|+||+..       +  +..+.|+.|.+|.+++++||+++|.+|++|++++|+|||++||
T Consensus         2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~G~eeaL~gm~~Ge~~~v~Ipp~~aY   80 (157)
T 3pr9_A            2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF   80 (157)
T ss_dssp             CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHHTCCCTTSCCSCEEEETTSSSSCHHHHHHHHHCCTTCEEEEEECGGGTT
T ss_pred             CCCCCEEEEEEEEEE-CCEEEEeccccccccccccccccCCCCEEEEECCCcHHHHHHHHHcCCCCCCEEEEEECcHHhc
Confidence            678999999999999 99999999751       0  1113799999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCCCceEEEEEEeeee
Q 006908          116 GEDDCPVAAPSTFPKDEELHFEIEMIDF  143 (626)
Q Consensus       116 g~~~~~~~~~~~i~~~~~lv~~v~l~~~  143 (626)
                      |..+            ..++..+....+
T Consensus        81 G~~~------------~~~V~~v~~~~f   96 (157)
T 3pr9_A           81 GKRD------------PSKIKLIPLSEF   96 (157)
T ss_dssp             CCCC------------GGGEEEEEHHHH
T ss_pred             CCCC------------hHhEEEcCHHHC
Confidence            9763            556666655554

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.59  E-value=1.6e-14  Score=133.65  Aligned_cols=120  Identities=19%  Similarity=0.322  Sum_probs=105.6

Q ss_pred             HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (626)
Q Consensus       395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL  474 (626)
                      ...+..+...|+.+++.|+|++|+..|++++.    +.|.+           ..+|+|+|.||+++++|.+|+.+|.+++
T Consensus         8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~al   72 (164)
T 3sz7_A            8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALS----IAPAN-----------PIYLSNRAAAYSASGQHEKAAEDAELAT   72 (164)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCcC-----------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            35688899999999999999999999999999    56655           4689999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH--HHHHHHHHHHHHH
Q 006908          475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPD--ATAALSKLKKQRQ  530 (626)
Q Consensus       475 ~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~--~~~~l~~l~~~~~  530 (626)
                      .++|+++.+|+++|.+|..+|++++|+.+|+++++++|++ ..  +...+..++.++.
T Consensus        73 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~l~~~~~~~~  129 (164)
T 3sz7_A           73 VVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNG-GSDAMKRGLETTKRKIE  129 (164)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999987 33  4444444444443

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}

Probab=99.58  E-value=5.5e-14  Score=128.09  Aligned_cols=83  Identities=20%  Similarity=0.314  Sum_probs=73.8

Q ss_pred             CCCCCCEEEEEEEEEEc-CCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCCCcEEEEEeeccccccCCCCCC
Q 006908           44 TPSDGDQVAYHCTVRTL-DGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPV  122 (626)
Q Consensus        44 ~p~~gd~V~v~y~~~~~-dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge~~~~~ip~~~~~g~~~~~~  122 (626)
                      .++.||.|++||++++. +|++|+||+.     +.|+.|.+|.++++|||+++|.+|++|++++|.|||+.+||..    
T Consensus         6 ~i~~gd~V~v~Y~g~~~~dG~~fdss~~-----~~p~~f~~G~g~vipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~----   76 (151)
T 2kr7_A            6 LESIKQAALIEYEVREQGSSIVLDSNIS-----KEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVY----   76 (151)
T ss_dssp             CTTSCCEEEEEEEEEESSCSCEEEESTT-----TCCEEEETTCCCSCHHHHHHHTTCCBTCEEEEEECGGGTTCSS----
T ss_pred             CCCCCCEEEEEEEEEECCCCCEEEeCCC-----CcCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEecHHHcCCC----
Confidence            37899999999999987 9999999984     4799999999999999999999999999999999999999976    


Q ss_pred             CCCCCCCCCceEEEEEEeeee
Q 006908          123 AAPSTFPKDEELHFEIEMIDF  143 (626)
Q Consensus       123 ~~~~~i~~~~~lv~~v~l~~~  143 (626)
                              +..+++.|....+
T Consensus        77 --------~~~~v~~v~~~~f   89 (151)
T 2kr7_A           77 --------ESSYLQEVPRDQF   89 (151)
T ss_dssp             --------CSCEEEEEEGGGG
T ss_pred             --------CcceEEEEcHHHc
Confidence                    3556777766555

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}

Probab=99.54  E-value=2.4e-14  Score=135.40  Aligned_cols=82  Identities=23%  Similarity=0.302  Sum_probs=72.3

Q ss_pred             CCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCCCcEEEEEeeccccccCCCCCCCC
Q 006908           45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA  124 (626)
Q Consensus        45 p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge~~~~~ip~~~~~g~~~~~~~~  124 (626)
                      ++.||.|+|+|++++.+|++|+||+.     ..|+.|.+|.++++|||+++|.+|++|++++|+|||+.+||..+     
T Consensus         3 i~~gd~V~v~Y~g~~~dG~~fdss~~-----~~P~~f~lG~g~vipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~-----   72 (196)
T 2kfw_A            3 VAKDLVVSLAYQVRTEDGVLVDESPV-----SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD-----   72 (196)
T ss_dssp             CCSSCEEEEEEEEEETTTEEEEECCT-----TSCCEEESSSSSSCHHHHHHHSSSCTTCEEEEECSTTTTSSCCC-----
T ss_pred             CCCCCEEEEEEEEEECCCCEEEecCC-----CCCEEEEECCCCcchHHHHHHcCCCCCCEEEEEeCcHHhcCCCC-----
Confidence            67899999999999889999999984     47999999999999999999999999999999999999999763     


Q ss_pred             CCCCCCCceEEEEEEeeee
Q 006908          125 PSTFPKDEELHFEIEMIDF  143 (626)
Q Consensus       125 ~~~i~~~~~lv~~v~l~~~  143 (626)
                             ..+++.|.+..+
T Consensus        73 -------~~lV~~vp~~~f   84 (196)
T 2kfw_A           73 -------ENLVQRVPKDVF   84 (196)
T ss_dssp             -------TTTCEEECGGGC
T ss_pred             -------hhhEEEEEHHHC
Confidence                   445666655554

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.53  E-value=9.8e-14  Score=125.21  Aligned_cols=120  Identities=15%  Similarity=0.246  Sum_probs=104.9

Q ss_pred             HHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006908          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (626)
Q Consensus       396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~  475 (626)
                      ..+..+...|..+++.|+|++|+..|++++.    ..|.+           ..+|+++|.|+.++|+|.+|+.+|.+++.
T Consensus        16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~   80 (142)
T 2xcb_A           16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCM----LDHYD-----------ARYFLGLGACRQSLGLYEQALQSYSYGAL   80 (142)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHHHHHHHH----hCCcc-----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            3566778899999999999999999999999    67766           45899999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 006908          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQE  531 (626)
Q Consensus       476 ~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~  531 (626)
                      ++|+++.+++++|.++..+|++++|+..|+++++++|++ +........+...+..
T Consensus        81 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~l~~  135 (142)
T 2xcb_A           81 MDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ-PAHEALAARAGAMLEA  135 (142)
T ss_dssp             HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC-GGGHHHHHHHHHHHHH
T ss_pred             cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999986 4445555555444443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.53  E-value=7.3e-14  Score=127.43  Aligned_cols=117  Identities=14%  Similarity=0.226  Sum_probs=102.4

Q ss_pred             HHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006908          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (626)
Q Consensus       396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~  475 (626)
                      ..+..+...|..++..|+|++|+..|++++.    ..|.+           ..+|+++|.|+..+|+|++|+.+|.+++.
T Consensus        19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~   83 (148)
T 2vgx_A           19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCV----LDHYD-----------SRFFLGLGACRQAMGQYDLAIHSYSYGAV   83 (148)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCChHHHHHHHHHHHH----cCccc-----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            3566788899999999999999999999999    67766           45889999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006908          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (626)
Q Consensus       476 ~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~  528 (626)
                      ++|+++.+++++|.++..+|++++|+..|++|++++|++ +........+...
T Consensus        84 l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~  135 (148)
T 2vgx_A           84 MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANX-PEFXELSTRVSSM  135 (148)
T ss_dssp             HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHH
T ss_pred             cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC-CcchHHHHHHHHH
Confidence            999999999999999999999999999999999999986 3443344444333

>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1

Probab=99.53  E-value=6.4e-15  Score=127.41  Aligned_cols=84  Identities=14%  Similarity=0.222  Sum_probs=74.5

Q ss_pred             CCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCCCcEEEEEeeccccccCCCCCCC
Q 006908           44 TPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVA  123 (626)
Q Consensus        44 ~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge~~~~~ip~~~~~g~~~~~~~  123 (626)
                      .++.||.|+|+|++++ ||++|++++      +.|+.|.+|.++++|||+++|.+|++|++++|.||+...||..+.   
T Consensus        29 ~~~~gD~V~v~Y~g~~-dG~~fdss~------~~p~~f~lG~g~vi~G~ee~L~Gmk~Ge~~~v~i~fP~~Yg~~~~---   98 (113)
T 1hxv_A           29 KLANGDIAIIDFTGIV-DNKKLASAS------AQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSDYHVKEL---   98 (113)
T ss_dssp             CCCSSEEEEEEEEEEE-TTEECSTTC------CSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTTSSSSGG---
T ss_pred             CCCCCCEEEEEEEEEE-CCEEcccCC------ccCEEEEECCCChhHHHHHHHCCCCCCCEEEEEEeCchhhCcCCC---
Confidence            3899999999999998 999999885      469999999999999999999999999999999973334987654   


Q ss_pred             CCCCCCCCceEEEEEEeeee
Q 006908          124 APSTFPKDEELHFEIEMIDF  143 (626)
Q Consensus       124 ~~~~i~~~~~lv~~v~l~~~  143 (626)
                            ++++++|+|+|+++
T Consensus        99 ------~g~~l~F~V~l~~V  112 (113)
T 1hxv_A           99 ------QSKPVTFEVVLKAI  112 (113)
T ss_dssp             ------GSCCCEEEEEECCB
T ss_pred             ------CCCEEEEEEEEEEE
Confidence                  47999999999887

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}

Probab=99.53  E-value=7.8e-14  Score=129.30  Aligned_cols=69  Identities=17%  Similarity=0.135  Sum_probs=65.7

Q ss_pred             CCCCCeEEEEEEEEeCCCcEEEecCCCccEEEEcCCCCccchHHHhhccCCCCcEEEEEEeCCccCCCC
Q 006908          169 PRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSP  237 (626)
Q Consensus       169 ~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~~~~~~g~~  237 (626)
                      ++.||.|+|+|++++.+|++|+|+..+.|+.|.+|.++++|||+++|.+|++|++++|.|||+.+||..
T Consensus         3 i~~gd~V~v~Y~g~~~dG~~fdss~~~~P~~f~lG~g~vipG~eeaL~Gm~~Ge~~~v~ippe~aYG~~   71 (171)
T 2k8i_A            3 VAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQY   71 (171)
T ss_dssp             CCTTEEEEEEEEEEETTSCEEEECCSSSCEEEETTSCSSCSHHHHHHTTCCTTCEEEEEEETTTSSCCC
T ss_pred             CCCCCEEEEEEEEEECCCCEEeeccCCcCEEEEECCCCcchHHHHHHcCCCCCCEEEEEECcHHhcCCC
Confidence            678999999999998899999999877999999999999999999999999999999999999999965

>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A

Probab=99.53  E-value=2.4e-14  Score=138.39  Aligned_cols=86  Identities=26%  Similarity=0.334  Sum_probs=72.6

Q ss_pred             CCCCCEEEEEEEEEEcCCcEEEeeccC-------C--CCCCcceEEEeCCCccchhHHhhcCCCCCCcEEEEEeeccccc
Q 006908           45 PSDGDQVAYHCTVRTLDGVIVESTRSE-------Y--GGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHY  115 (626)
Q Consensus        45 p~~gd~V~v~y~~~~~dG~~~~st~~~-------~--~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge~~~~~ip~~~~~  115 (626)
                      ++.||.|+|||++++ ||++|+||+..       +  +..+.|+.|.+|.++++|||+++|.+|++|++++|.|||++||
T Consensus         2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~A~e~gi~~~~~~~~P~~f~lG~g~vIpG~eeaL~Gm~vGek~~v~Ippe~AY   80 (231)
T 3prb_A            2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF   80 (231)
T ss_dssp             CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHTTCCCTTSCCSCEEEETTSSSSCHHHHHHHHTCCTTCEEEEEECGGGTT
T ss_pred             CCCCCEEEEEEEEEE-CCEEEEeccchhcccccccccccCCCCEEEEeCCCcHHHHHHHHHcCCCCCCEEEEEeCcHHhc
Confidence            578999999999999 99999999751       0  1123799999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCCCceEEEEEEeeee
Q 006908          116 GEDDCPVAAPSTFPKDEELHFEIEMIDF  143 (626)
Q Consensus       116 g~~~~~~~~~~~i~~~~~lv~~v~l~~~  143 (626)
                      |..+            ..++..|....+
T Consensus        81 Ge~~------------~~lv~~vp~~~f   96 (231)
T 3prb_A           81 GKRD------------PSKIKLIPLSEF   96 (231)
T ss_dssp             CCCC------------GGGEEEEETHHH
T ss_pred             CCCC------------hHHEEecCHHHC
Confidence            9764            456666655554

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.52  E-value=7.6e-14  Score=124.06  Aligned_cols=120  Identities=26%  Similarity=0.426  Sum_probs=106.4

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~  476 (626)
                      .+..+...|..++..|+|++|+..|++++.    ..|.+           ..+++++|.|++.+++|.+|+..+.+++.+
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~   72 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLV-----------AVYYTNRALCYLKMQQPEQALADCRRALEL   72 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHh----hCcCc-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            366788999999999999999999999999    55655           458999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHHHHHH
Q 006908          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS-----SEPDATAALSKLKKQRQEV  532 (626)
Q Consensus       477 dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~-----~~~~~~~~l~~l~~~~~~~  532 (626)
                      +|.++.+++++|.++..+|++++|+..|+++++++|+     + ..+...+..+..+....
T Consensus        73 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~-~~~~~~l~~~~~~~~~~  132 (137)
T 3q49_B           73 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG-DDIPSALRIAKKKRWNS  132 (137)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCT-THHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999887     4 46777777766555443

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1

Probab=99.52  E-value=2.1e-15  Score=137.56  Aligned_cols=87  Identities=21%  Similarity=0.349  Sum_probs=72.9

Q ss_pred             CCCCCEEEEEEEEEEcCCcEEEeeccC-------C-C-CCCcceEEEeCCCccchhHHhhcCCCCCCcEEEEEeeccccc
Q 006908           45 PSDGDQVAYHCTVRTLDGVIVESTRSE-------Y-G-GKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHY  115 (626)
Q Consensus        45 p~~gd~V~v~y~~~~~dG~~~~st~~~-------~-~-~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge~~~~~ip~~~~~  115 (626)
                      ++.||.|++||++++.+|++|+||+..       + . ....|+.|.+|.+++++||+++|.+|++|++++|.|||+.||
T Consensus         2 i~~gd~V~v~Y~g~~~dG~~fdss~~~~a~~~g~~~~~~~~~P~~f~~G~g~vi~G~eeaL~gm~~Ge~~~v~ipp~~aY   81 (151)
T 1ix5_A            2 VDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAY   81 (151)
T ss_dssp             CCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSS
T ss_pred             CCCCCEEEEEEEEEECCCCEEEecchhhcccccccccccCCCCEEEEECCCChhHHHHHHHcCCCCCCEEEEEECcHHHC
Confidence            688999999999998899999999620       0 0 023699999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCCCceEEEEEEeeee
Q 006908          116 GEDDCPVAAPSTFPKDEELHFEIEMIDF  143 (626)
Q Consensus       116 g~~~~~~~~~~~i~~~~~lv~~v~l~~~  143 (626)
                      |..+            ..+++.|.+..+
T Consensus        82 G~~~------------~~~v~~v~~~~f   97 (151)
T 1ix5_A           82 GNRN------------EMLIQKIPRDAF   97 (151)
T ss_dssp             CSCC------------STTBCCEETHHH
T ss_pred             CCCC------------ccEEEEEEHHHc
Confidence            9763            445666666665

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}

Probab=99.51  E-value=3.7e-13  Score=122.58  Aligned_cols=84  Identities=13%  Similarity=0.056  Sum_probs=76.2

Q ss_pred             CCCCCCCeEEEEEEEEeC-CCcEEEecCCCccEEEEcCCCCccchHHHhhccCCCCcEEEEEEeCCccCCCCCCCCCCCc
Q 006908          167 ETPRAPYEVKAWISAKTG-DGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGC  245 (626)
Q Consensus       167 ~~~~~g~~V~v~y~~~~~-~g~~~~s~~~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~ip~~  245 (626)
                      ..++.||.|++||++++. +|++|+|+..+.|+.|.+|.|+++|||+++|.+|++|++++|.|||+.+||.       .+
T Consensus         5 ~~i~~gd~V~v~Y~g~~~~dG~~fdss~~~~p~~f~~G~g~vipg~e~aL~gm~~Ge~~~v~ipp~~aYG~-------~~   77 (151)
T 2kr7_A            5 DLESIKQAALIEYEVREQGSSIVLDSNISKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGV-------YE   77 (151)
T ss_dssp             CCTTSCCEEEEEEEEEESSCSCEEEESTTTCCEEEETTCCCSCHHHHHHHTTCCBTCEEEEEECGGGTTCS-------SC
T ss_pred             cCCCCCCEEEEEEEEEECCCCCEEEeCCCCcCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEecHHHcCC-------CC
Confidence            467889999999999987 9999999987799999999999999999999999999999999999999994       44


Q ss_pred             ceEEEEEEEeeE
Q 006908          246 EEVHFEVELVHL  257 (626)
Q Consensus       246 ~~l~~~v~l~~~  257 (626)
                      ..+++.|.+..|
T Consensus        78 ~~~v~~v~~~~f   89 (151)
T 2kr7_A           78 SSYLQEVPRDQF   89 (151)
T ss_dssp             SCEEEEEEGGGG
T ss_pred             cceEEEEcHHHc
Confidence            567788877776

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.50  E-value=9.7e-14  Score=126.84  Aligned_cols=113  Identities=14%  Similarity=0.105  Sum_probs=94.7

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~  476 (626)
                      .+..+...|..+++.|+|++|+..|++++.    +.|.+           ..+|+++|.||.++|++++|+.++.+++++
T Consensus        30 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~   94 (150)
T 4ga2_A           30 KSIKGFYFAKLYYEAKEYDLAKKYICTYIN----VQERD-----------PKAHRFLGLLYELEENTDKAVECYRRSVEL   94 (150)
T ss_dssp             HHTTHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence            344556789999999999999999999998    67766           458999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhcCCCCHHHHHHHHHHH
Q 006908          477 NPAHVKGLYRRGMAYMALGEFEEAQRD-FEMMMKVDKSSEPDATAALSKL  525 (626)
Q Consensus       477 dp~~~ka~~~~g~a~~~lg~~~eA~~~-~~kAl~l~P~~~~~~~~~l~~l  525 (626)
                      +|+++.+|+++|.++..+|++++|... +++|++++|++ +.+...+..+
T Consensus        95 ~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~-~~~~~l~~~l  143 (150)
T 4ga2_A           95 NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS-PAVYKLKEQL  143 (150)
T ss_dssp             CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC-HHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC-HHHHHHHHHH
Confidence            999999999999999999999876665 58999999998 5555554444

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}

Probab=99.50  E-value=1.3e-13  Score=126.99  Aligned_cols=84  Identities=17%  Similarity=0.235  Sum_probs=74.8

Q ss_pred             CCCCCCeEEEEEEEEeCCCcEEEecCC-CccEEEEcCCCCccchHHHhhccCCCCcEEEEEEeCCccCCCCCCCCCCCcc
Q 006908          168 TPRAPYEVKAWISAKTGDGKLILSHRE-GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCE  246 (626)
Q Consensus       168 ~~~~g~~V~v~y~~~~~~g~~~~s~~~-~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~ip~~~  246 (626)
                      .++.|+.|+|||++++.+|++|+|+.. +.|+.|.+|.+++||||+++|.+|++|++++|.|||+.|||.       .+.
T Consensus        24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~~~P~~f~lG~g~vipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~-------~~~   96 (169)
T 4dt4_A           24 SVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGV-------PSP   96 (169)
T ss_dssp             SCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTCC-------CCG
T ss_pred             cCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCC-------CCh
Confidence            578999999999999999999999864 589999999999999999999999999999999999999994       456


Q ss_pred             eEEEEEEEeeEE
Q 006908          247 EVHFEVELVHLI  258 (626)
Q Consensus       247 ~l~~~v~l~~~~  258 (626)
                      .+++.|.+..|.
T Consensus        97 ~lv~~vp~~~f~  108 (169)
T 4dt4_A           97 DLIQYFSRREFM  108 (169)
T ss_dssp             GGEEEEEGGGGT
T ss_pred             HHEEEeCHHHCC
Confidence            666777766663

>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1

Probab=99.49  E-value=2.6e-14  Score=123.58  Aligned_cols=84  Identities=21%  Similarity=0.196  Sum_probs=73.9

Q ss_pred             CCCCCCCeEEEEEEEEeCCCcEEEecCCCccEEEEcCCCCccchHHHhhccCCCCcEEEEEEe-CCccCCCCCCCCCCCc
Q 006908          167 ETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT-SQYLTPSPLMPVVEGC  245 (626)
Q Consensus       167 ~~~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~-~~~~~g~~~~~~ip~~  245 (626)
                      ..++.||.|+|||++++ ||++|+++. +.|+.|.+|.+++||||+++|.+|++|++++|.|| |.. ||..+    .++
T Consensus        28 ~~~~~gD~V~v~Y~g~~-dG~~fdss~-~~p~~f~lG~g~vi~G~ee~L~Gmk~Ge~~~v~i~fP~~-Yg~~~----~~g  100 (113)
T 1hxv_A           28 KKLANGDIAIIDFTGIV-DNKKLASAS-AQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSD-YHVKE----LQS  100 (113)
T ss_dssp             -CCCSSEEEEEEEEEEE-TTEECSTTC-CSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTT-SSSSG----GGS
T ss_pred             CCCCCCCEEEEEEEEEE-CCEEcccCC-ccCEEEEECCCChhHHHHHHHCCCCCCCEEEEEEeCchh-hCcCC----CCC
Confidence            46889999999999998 999999874 78999999999999999999999999999999996 544 88543    256


Q ss_pred             ceEEEEEEEeeE
Q 006908          246 EEVHFEVELVHL  257 (626)
Q Consensus       246 ~~l~~~v~l~~~  257 (626)
                      ++++|+|+|+++
T Consensus       101 ~~l~F~V~l~~V  112 (113)
T 1hxv_A          101 KPVTFEVVLKAI  112 (113)
T ss_dssp             CCCEEEEEECCB
T ss_pred             CEEEEEEEEEEE
Confidence            899999999875

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}

Probab=99.47  E-value=3.2e-13  Score=127.67  Aligned_cols=82  Identities=17%  Similarity=0.098  Sum_probs=73.0

Q ss_pred             CCCCCeEEEEEEEEeCCCcEEEecCCCccEEEEcCCCCccchHHHhhccCCCCcEEEEEEeCCccCCCCCCCCCCCcceE
Q 006908          169 PRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEV  248 (626)
Q Consensus       169 ~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~ip~~~~l  248 (626)
                      ++.||.|+|||++++.+|++|+|+....|+.|.+|.++++|||+++|.+|++|++++|.|||+.+||...       ..+
T Consensus         3 i~~gd~V~v~Y~g~~~dG~~fdss~~~~P~~f~lG~g~vipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~-------~~l   75 (196)
T 2kfw_A            3 VAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD-------ENL   75 (196)
T ss_dssp             CCSSCEEEEEEEEEETTTEEEEECCTTSCCEEESSSSSSCHHHHHHHSSSCTTCEEEEECSTTTTSSCCC-------TTT
T ss_pred             CCCCCEEEEEEEEEECCCCEEEecCCCCCEEEEECCCCcchHHHHHHcCCCCCCEEEEEeCcHHhcCCCC-------hhh
Confidence            6789999999999988999999998779999999999999999999999999999999999999999543       445


Q ss_pred             EEEEEEeeE
Q 006908          249 HFEVELVHL  257 (626)
Q Consensus       249 ~~~v~l~~~  257 (626)
                      ++.|.+..|
T Consensus        76 V~~vp~~~f   84 (196)
T 2kfw_A           76 VQRVPKDVF   84 (196)
T ss_dssp             CEEECGGGC
T ss_pred             EEEEEHHHC
Confidence            566666665

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*

Probab=99.46  E-value=9.2e-13  Score=120.54  Aligned_cols=77  Identities=18%  Similarity=0.315  Sum_probs=69.8

Q ss_pred             CCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCCCcEEEEEeeccccccCCCCCCCC
Q 006908           45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA  124 (626)
Q Consensus        45 p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge~~~~~ip~~~~~g~~~~~~~~  124 (626)
                      ++.||.|++||+++ .||++|+||+         +.|.+|.++++|||+++|.+|++|++++|.|||+.+||..      
T Consensus         3 i~~gd~V~v~Y~g~-~dG~~fdss~---------~~f~~G~g~vipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~------   66 (158)
T 3cgm_A            3 VGQDKVVTIRYTLQ-VEGEVLDQGE---------LSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPH------   66 (158)
T ss_dssp             CCTTEEEEEEEEEE-ETTEEEEEEE---------EEEETTSSSSCHHHHHHHTTCBTTCEEEEEECGGGTTCCC------
T ss_pred             CCCCCEEEEEEEEE-ECCEEEEeeE---------EEEEECCCCcChHHHHHHcCCCCCCEEEEEECcHHHcCCC------
Confidence            57899999999999 8999999874         8899999999999999999999999999999999999975      


Q ss_pred             CCCCCCCceEEEEEEeeee
Q 006908          125 PSTFPKDEELHFEIEMIDF  143 (626)
Q Consensus       125 ~~~i~~~~~lv~~v~l~~~  143 (626)
                            +..+++.|.+..+
T Consensus        67 ------~~~lv~~v~~~~f   79 (158)
T 3cgm_A           67 ------DPEGVQVVPLSAF   79 (158)
T ss_dssp             ------CGGGEEEEEGGGS
T ss_pred             ------CcceEEEEEHHHC
Confidence                  4667888877666

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.45  E-value=1.2e-12  Score=111.93  Aligned_cols=114  Identities=26%  Similarity=0.461  Sum_probs=103.6

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~  476 (626)
                      .+..+...|..++..|+|++|+..|.+++.    ..|.+           ..+++++|.|+..+++|.+|+..+.+++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   67 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIK----LDPHN-----------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDL   67 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHH----HCCCc-----------HHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            567888999999999999999999999999    45554           458999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (626)
Q Consensus       477 dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~  526 (626)
                      +|.+..+++++|.++..+|++++|+..|+++++++|++ ..+...+..+.
T Consensus        68 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~  116 (118)
T 1elw_A           68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN-PQLKEGLQNME  116 (118)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-HHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-HHHHHHHHHhh
Confidence            99999999999999999999999999999999999997 56776666654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.44  E-value=2.9e-13  Score=123.64  Aligned_cols=112  Identities=11%  Similarity=0.060  Sum_probs=96.4

Q ss_pred             hhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 006908          404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG  483 (626)
Q Consensus       404 ~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka  483 (626)
                      .|..+..+|++++|+..|++++.    ..|.           ....++++|.+|+++|+|++|+.++.++|+++|+++.+
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~----~~p~-----------~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a   67 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTP----SPRQ-----------KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKA   67 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSC----SHHH-----------HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcc----cCcc-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            58888999999999999999987    3322           24578899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 006908          484 LYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQE  531 (626)
Q Consensus       484 ~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~  531 (626)
                      |+++|.++..+|++++|+..|++|++++|++ ..+...+..+......
T Consensus        68 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~  114 (150)
T 4ga2_A           68 HRFLGLLYELEENTDKAVECYRRSVELNPTQ-KDLVLKIAELLCKNDV  114 (150)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999999998 6788888877655443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.43  E-value=5.6e-12  Score=115.21  Aligned_cols=119  Identities=27%  Similarity=0.461  Sum_probs=107.5

Q ss_pred             hhhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHH
Q 006908          391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEAC  470 (626)
Q Consensus       391 ~~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~  470 (626)
                      .......+..+...|..++..|+|.+|+..|.+++.    ..|.+           ..+++++|.|+..+++|.+|+..+
T Consensus         6 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~   70 (166)
T 1a17_A            6 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIE----LNPSN-----------AIYYGNRSLAYLRTECYGYALGDA   70 (166)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCCCC-----------hHHHHHHHHHHHHcCCHHHHHHHH
Confidence            356778899999999999999999999999999999    45554           458999999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006908          471 NKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (626)
Q Consensus       471 ~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l  525 (626)
                      .+++.++|.++.+++++|.++..+|++++|+..|+++++++|.+ ..+...+..+
T Consensus        71 ~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~~~~~  124 (166)
T 1a17_A           71 TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD-KDAKMKYQEC  124 (166)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHH
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHH
Confidence            99999999999999999999999999999999999999999997 5566555554

>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A

Probab=99.42  E-value=1.1e-13  Score=126.23  Aligned_cols=81  Identities=20%  Similarity=0.117  Sum_probs=70.4

Q ss_pred             CCCCCeEEEEEEEEeCCCcEEEecCC--------------CccEEEEcCCCCccchHHHhhccCCCCcEEEEEEeCCccC
Q 006908          169 PRAPYEVKAWISAKTGDGKLILSHRE--------------GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLT  234 (626)
Q Consensus       169 ~~~g~~V~v~y~~~~~~g~~~~s~~~--------------~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~~~~~~  234 (626)
                      ++.||.|+|||++++ +|++|+|+..              +.|+.|.+|.|+++|||++||.+|++|++++|.|||+.||
T Consensus         2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~G~eeaL~gm~~Ge~~~v~Ipp~~aY   80 (157)
T 3pr9_A            2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF   80 (157)
T ss_dssp             CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHHTCCCTTSCCSCEEEETTSSSSCHHHHHHHHHCCTTCEEEEEECGGGTT
T ss_pred             CCCCCEEEEEEEEEE-CCEEEEeccccccccccccccccCCCCEEEEECCCcHHHHHHHHHcCCCCCCEEEEEECcHHhc
Confidence            578999999999999 9999998854              3899999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCcceEEEEEEEeeE
Q 006908          235 PSPLMPVVEGCEEVHFEVELVHL  257 (626)
Q Consensus       235 g~~~~~~ip~~~~l~~~v~l~~~  257 (626)
                      |..       +..++..|.+..|
T Consensus        81 G~~-------~~~~V~~v~~~~f   96 (157)
T 3pr9_A           81 GKR-------DPSKIKLIPLSEF   96 (157)
T ss_dssp             CCC-------CGGGEEEEEHHHH
T ss_pred             CCC-------ChHhEEEcCHHHC
Confidence            944       4445566655554

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.42  E-value=1.3e-12  Score=149.18  Aligned_cols=116  Identities=19%  Similarity=0.298  Sum_probs=68.1

Q ss_pred             HHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006908          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (626)
Q Consensus       396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~  475 (626)
                      ..+..+.+.|+.+.++|+|++|+..|++||+    +.|++           ..+|+|+|.+|.++|+|++|+.+|.+||+
T Consensus         7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~----l~P~~-----------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~   71 (723)
T 4gyw_A            7 THADSLNNLANIKREQGNIEEAVRLYRKALE----VFPEF-----------AAAHSNLASVLQQQGKLQEALMHYKEAIR   71 (723)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4566777777777777788888888887777    55555           23455555555555555555555555555


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006908          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (626)
Q Consensus       476 ~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~  527 (626)
                      ++|+++.+|+++|.+|..+|++++|++.|++|++++|++ ..+..+|..+..
T Consensus        72 l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~-~~a~~~Lg~~~~  122 (723)
T 4gyw_A           72 ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF-ADAHSNLASIHK  122 (723)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHH
Confidence            555555555555555555555555555555555555554 344444444433

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}

Probab=99.42  E-value=2e-12  Score=119.83  Aligned_cols=82  Identities=23%  Similarity=0.302  Sum_probs=72.2

Q ss_pred             CCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCCCcEEEEEeeccccccCCCCCCCC
Q 006908           45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA  124 (626)
Q Consensus        45 p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge~~~~~ip~~~~~g~~~~~~~~  124 (626)
                      ++.||.|+|+|++++.+|++|+||+.     +.|+.|.+|.++++|||+++|.+|++|++++|.|||+.+||..+     
T Consensus         3 i~~gd~V~v~Y~g~~~dG~~fdss~~-----~~P~~f~lG~g~vipG~eeaL~Gm~~Ge~~~v~ippe~aYG~~~-----   72 (171)
T 2k8i_A            3 VAKDLVVSLAYQVRTEDGVLVDESPV-----SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD-----   72 (171)
T ss_dssp             CCTTEEEEEEEEEEETTSCEEEECCS-----SSCEEEETTSCSSCSHHHHHHTTCCTTCEEEEEEETTTSSCCCC-----
T ss_pred             CCCCCEEEEEEEEEECCCCEEeeccC-----CcCEEEEECCCCcchHHHHHHcCCCCCCEEEEEECcHHhcCCCC-----
Confidence            67899999999999889999999984     47999999999999999999999999999999999999999763     


Q ss_pred             CCCCCCCceEEEEEEeeee
Q 006908          125 PSTFPKDEELHFEIEMIDF  143 (626)
Q Consensus       125 ~~~i~~~~~lv~~v~l~~~  143 (626)
                             ..+++.|....+
T Consensus        73 -------~~~v~~v~~~~f   84 (171)
T 2k8i_A           73 -------ENLVQRVPKDVF   84 (171)
T ss_dssp             -------TTSEEEEEGGGG
T ss_pred             -------hhhEEEeeHHHC
Confidence                   345666665555

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.42  E-value=2.3e-12  Score=124.31  Aligned_cols=125  Identities=14%  Similarity=0.118  Sum_probs=102.7

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHH-----HhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKV-----FVGKRNLLHLNVAACLLKLGECRKSIEACNK  472 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~-----~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~  472 (626)
                      +..+..+|..++..|+|++|+..|++++.    ..|.+.+-...     .......+++++|.||.++|+|++|+..|.+
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~   79 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIA----LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKE   79 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            55677899999999999999999999999    45543220000     0011122334499999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006908          473 VLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (626)
Q Consensus       473 aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~  527 (626)
                      +|+++|+++.+++++|.++..+|++++|+..|+++++++|++ ..+...+..+..
T Consensus        80 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~lg~~~~  133 (208)
T 3urz_A           80 LLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN-LAANIFLGNYYY  133 (208)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHH
T ss_pred             HHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998 678888877653

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=3.3e-12  Score=114.42  Aligned_cols=117  Identities=31%  Similarity=0.486  Sum_probs=103.7

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~  476 (626)
                      .+..+...|..++..|+|.+|+..|++++.    ..|.+        .....++.++|.|++++++|.+|+..|.+++.+
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~----~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   94 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALG----LDATP--------QDQAVLHRNRAACHLKLEDYDKAETEASKAIEK   94 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT----SCCCH--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----Hcccc--------hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence            466788999999999999999999999998    55543        123568999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (626)
Q Consensus       477 dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~  526 (626)
                      +|.++.+++++|.++..+|++++|+..|+++++++|++ ..+...+..+.
T Consensus        95 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~  143 (148)
T 2dba_A           95 DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN-KVFQEALRNIS  143 (148)
T ss_dssp             TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSC-HHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHH
Confidence            99999999999999999999999999999999999997 56666666553

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.41  E-value=8.7e-13  Score=115.84  Aligned_cols=99  Identities=11%  Similarity=0.025  Sum_probs=88.7

Q ss_pred             HHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 006908          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (626)
Q Consensus       401 ~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~  480 (626)
                      +...|..+++.|+|++|+..|++++.    ..|.+           ..+|+++|.|+..+|++.+|+..+.++++++|++
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~----~~P~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~   84 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQ----KEPER-----------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD   84 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            45688899999999999999999999    67766           4589999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       481 ~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      +.+++.+|.++..+|++++|+..|+++++++|++
T Consensus        85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~  118 (121)
T 1hxi_A           85 IAVHAALAVSHTNEHNANAALASLRAWLLSQPQY  118 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence            9999999999999999999999999999999986

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.40  E-value=8e-13  Score=120.52  Aligned_cols=105  Identities=20%  Similarity=0.259  Sum_probs=92.8

Q ss_pred             ccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCC
Q 006908          410 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC----------RKSIEACNKVLDANPA  479 (626)
Q Consensus       410 ~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~----------~~A~~~~~~aL~~dp~  479 (626)
                      +.+.|++|+..|++++.    ++|.+           ..+|+|+|.|+..++++          ++|+..|++||+++|+
T Consensus        14 r~~~feeA~~~~~~Ai~----l~P~~-----------aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~   78 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYK----SNPLD-----------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK   78 (158)
T ss_dssp             HHHHHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHhHHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC
Confidence            45679999999999999    78877           45899999999999876          4999999999999999


Q ss_pred             CHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006908          480 HVKGLYRRGMAYMALG-----------EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (626)
Q Consensus       480 ~~ka~~~~g~a~~~lg-----------~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~  530 (626)
                      +..|||++|++|..+|           +|++|+++|++|++++|++ ...++.++.+.+...
T Consensus        79 ~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~-~~y~~al~~~~ka~e  139 (158)
T 1zu2_A           79 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN-THYLKSLEMTAKAPQ  139 (158)
T ss_dssp             CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHTHHH
T ss_pred             cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHhCHh
Confidence            9999999999999985           8999999999999999998 677777776655444

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.40  E-value=7.7e-12  Score=108.84  Aligned_cols=121  Identities=26%  Similarity=0.389  Sum_probs=106.9

Q ss_pred             hhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHH
Q 006908          392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN  471 (626)
Q Consensus       392 ~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~  471 (626)
                      +.....+..+...|..++..|+|+.|+..|.+++.    ..|.+           ..++.++|.|+..+++|.+|+..+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~   70 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIE----LNPAN-----------AVYFCNRAAAYSKLGNYAGAVQDCE   70 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHH----cCCCC-----------HHHHHHHHHHHHHhhchHHHHHHHH
Confidence            34456788899999999999999999999999998    45544           4588999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006908          472 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (626)
Q Consensus       472 ~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~  528 (626)
                      +++.++|.+..+++++|.++..+|++++|+..|+++++++|++ ..+...+..+...
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~  126 (131)
T 2vyi_A           71 RAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN-ETYKSNLKIAELK  126 (131)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHH
T ss_pred             HHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccc-hHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999987 5666666665443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.39  E-value=3.3e-12  Score=112.02  Aligned_cols=114  Identities=25%  Similarity=0.470  Sum_probs=103.0

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~  476 (626)
                      .+..+...|..++..|+|++|+..|.+++.    ..|.+           ..+++++|.|+..+++|++|+..+.+++.+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~   79 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK----RNPKD-----------AKLYSNRAACYTKLLEFQLALKDCEECIQL   79 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT----TCTTC-----------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCc-----------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            567788999999999999999999999998    56655           458999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (626)
Q Consensus       477 dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~  526 (626)
                      +|.++.+++++|.++..+|++++|+..|+++++++|.+ ..+...+..+.
T Consensus        80 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~  128 (133)
T 2lni_A           80 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC-KEAADGYQRCM  128 (133)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG-THHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc-hHHHHHHHHHH
Confidence            99999999999999999999999999999999999986 55666666554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.38  E-value=4.3e-12  Score=111.29  Aligned_cols=114  Identities=17%  Similarity=0.200  Sum_probs=98.5

Q ss_pred             HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006908          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (626)
Q Consensus       400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~  479 (626)
                      .+...|..++..|+|++|+..|++++.    ..|.+.        ....+++++|.|++++|+|.+|+..+.+++..+|+
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~p~~~--------~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~   71 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLE----LYPNGV--------YTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT   71 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSSST--------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHH----HCCCCc--------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence            356788999999999999999999999    445442        12358899999999999999999999999999999


Q ss_pred             C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908          480 H---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (626)
Q Consensus       480 ~---~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~  526 (626)
                      +   +.+++++|.++..+|++++|+..|+++++..|++ ..+...+..+.
T Consensus        72 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~a~~~l~  120 (129)
T 2xev_A           72 HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGS-DAARVAQERLQ  120 (129)
T ss_dssp             STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTS-HHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-hHHHHHHHHHH
Confidence            9   8999999999999999999999999999999997 45555555444

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.38  E-value=5.1e-12  Score=110.13  Aligned_cols=119  Identities=23%  Similarity=0.378  Sum_probs=105.1

Q ss_pred             HHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006908          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (626)
Q Consensus       396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~  475 (626)
                      +.+..+...|..++..|+|.+|+..|.+++.    ..|.+           ..+++++|.|+..+++|.+|+..+.+++.
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~   66 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKE----LDPTN-----------MTYITNQAAVYFEKGDYNKCRELCEKAIE   66 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh----cCCcc-----------HHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence            3567888999999999999999999999999    44544           45889999999999999999999999999


Q ss_pred             hCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 006908          476 ANPAH-------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQE  531 (626)
Q Consensus       476 ~dp~~-------~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~  531 (626)
                      ++|.+       ..+++++|.++..+|++++|+..|++++++.|+  ..+...+..+...+.+
T Consensus        67 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~  127 (131)
T 1elr_A           67 VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT--PDVLKKCQQAEKILKE  127 (131)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHH
T ss_pred             hccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHH
Confidence            99877       999999999999999999999999999999984  5677777777665543

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1

Probab=99.36  E-value=6.4e-13  Score=121.04  Aligned_cols=82  Identities=15%  Similarity=0.149  Sum_probs=71.2

Q ss_pred             CCCCCeEEEEEEEEeCCCcEEEecC--------------CCccEEEEcCCCCccchHHHhhccCCCCcEEEEEEeCCccC
Q 006908          169 PRAPYEVKAWISAKTGDGKLILSHR--------------EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLT  234 (626)
Q Consensus       169 ~~~g~~V~v~y~~~~~~g~~~~s~~--------------~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~~~~~~  234 (626)
                      ++.||.|++||++++.+|++|+|+.              ...|+.|.+|.|+++|||+++|.+|++|++++|.|||+.||
T Consensus         2 i~~gd~V~v~Y~g~~~dG~~fdss~~~~a~~~g~~~~~~~~~P~~f~~G~g~vi~G~eeaL~gm~~Ge~~~v~ipp~~aY   81 (151)
T 1ix5_A            2 VDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAY   81 (151)
T ss_dssp             CCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSS
T ss_pred             CCCCCEEEEEEEEEECCCCEEEecchhhcccccccccccCCCCEEEEECCCChhHHHHHHHcCCCCCCEEEEEECcHHHC
Confidence            5789999999999988999999984              34799999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCcceEEEEEEEeeE
Q 006908          235 PSPLMPVVEGCEEVHFEVELVHL  257 (626)
Q Consensus       235 g~~~~~~ip~~~~l~~~v~l~~~  257 (626)
                      |..+       ..+++.|.+..|
T Consensus        82 G~~~-------~~~v~~v~~~~f   97 (151)
T 1ix5_A           82 GNRN-------EMLIQKIPRDAF   97 (151)
T ss_dssp             CSCC-------STTBCCEETHHH
T ss_pred             CCCC-------ccEEEEEEHHHc
Confidence            9554       344555666555

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.35  E-value=5.8e-12  Score=122.30  Aligned_cols=114  Identities=23%  Similarity=0.288  Sum_probs=71.4

Q ss_pred             HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006908          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (626)
Q Consensus       399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp  478 (626)
                      ..+...|..+++.|+|++|+..|++++.    ..|.+           ..+++++|.++.++|++.+|+..+.++++++|
T Consensus         6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P   70 (217)
T 2pl2_A            6 QNPLRLGVQLYALGRYDAALTLFERALK----ENPQD-----------PEALYWLARTQLKLGLVNPALENGKTLVARTP   70 (217)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHT----TSSSC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            3455667777777777777777777776    55555           23566666666666666666666666666666


Q ss_pred             CCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006908          479 AHVKGLYRRGMAYMAL-----------GEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (626)
Q Consensus       479 ~~~ka~~~~g~a~~~l-----------g~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~  528 (626)
                      +++.+++++|.++..+           |++++|+..|++|++++|++ ..+...+..+...
T Consensus        71 ~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~-~~~~~~lg~~~~~  130 (217)
T 2pl2_A           71 RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY-APLHLQRGLVYAL  130 (217)
T ss_dssp             TCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHH
Confidence            6666666666666666           66666666666666666665 4455555544433

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.34  E-value=4.7e-12  Score=144.70  Aligned_cols=116  Identities=18%  Similarity=0.251  Sum_probs=106.7

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +..+.+.|+.+++.|+|++|+..|++|++    +.|++           ..+|+|+|.++.++|++++|+.+|++||+++
T Consensus        43 ~~a~~nLg~~l~~~g~~~eA~~~~~~Al~----l~P~~-----------~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~  107 (723)
T 4gyw_A           43 AAAHSNLASVLQQQGKLQEALMHYKEAIR----ISPTF-----------ADAYSNMGNTLKEMQDVQGALQCYTRAIQIN  107 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            56778899999999999999999999999    67776           5589999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 006908          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (626)
Q Consensus       478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~  529 (626)
                      |+++.+|+++|.+|..+|++++|++.|++|++++|++ ..+..+|..+...+
T Consensus       108 P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~-~~a~~~L~~~l~~~  158 (723)
T 4gyw_A          108 PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF-PDAYCNLAHCLQIV  158 (723)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-HHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHhhhhhHHHhc
Confidence            9999999999999999999999999999999999998 67887877765543

>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A

Probab=99.34  E-value=7.8e-13  Score=127.84  Aligned_cols=81  Identities=20%  Similarity=0.117  Sum_probs=70.5

Q ss_pred             CCCCCeEEEEEEEEeCCCcEEEecCC--------------CccEEEEcCCCCccchHHHhhccCCCCcEEEEEEeCCccC
Q 006908          169 PRAPYEVKAWISAKTGDGKLILSHRE--------------GEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLT  234 (626)
Q Consensus       169 ~~~g~~V~v~y~~~~~~g~~~~s~~~--------------~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~~~~~~  234 (626)
                      ++.||.|+|||++++ +|++|+|+..              +.|+.|.+|.|+++|||++||.+|++|++++|.|||+.||
T Consensus         2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~A~e~gi~~~~~~~~P~~f~lG~g~vIpG~eeaL~Gm~vGek~~v~Ippe~AY   80 (231)
T 3prb_A            2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF   80 (231)
T ss_dssp             CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHTTCCCTTSCCSCEEEETTSSSSCHHHHHHHHTCCTTCEEEEEECGGGTT
T ss_pred             CCCCCEEEEEEEEEE-CCEEEEeccchhcccccccccccCCCCEEEEeCCCcHHHHHHHHHcCCCCCCEEEEEeCcHHhc
Confidence            568999999999999 9999998854              3899999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCcceEEEEEEEeeE
Q 006908          235 PSPLMPVVEGCEEVHFEVELVHL  257 (626)
Q Consensus       235 g~~~~~~ip~~~~l~~~v~l~~~  257 (626)
                      |..       +..++..|.+..|
T Consensus        81 Ge~-------~~~lv~~vp~~~f   96 (231)
T 3prb_A           81 GKR-------DPSKIKLIPLSEF   96 (231)
T ss_dssp             CCC-------CGGGEEEEETHHH
T ss_pred             CCC-------ChHHEEecCHHHC
Confidence            954       4445566665555

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.34  E-value=6e-12  Score=127.53  Aligned_cols=102  Identities=25%  Similarity=0.443  Sum_probs=96.0

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +..++..|+.+++.|+|++|+..|++|+.    ..|.+           ..+++|+|.||+++|+|.+|+.++.++++++
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~   68 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLV-----------AVYYTNRALCYLKMQQPEQALADCRRALELD   68 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCcc-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            56788999999999999999999999999    56665           4689999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      |+++++++++|.+|..+|++++|+..|++|++++|++
T Consensus        69 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999999999999999999865

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*

Probab=99.34  E-value=1e-11  Score=113.63  Aligned_cols=78  Identities=14%  Similarity=0.040  Sum_probs=71.1

Q ss_pred             CCCCCeEEEEEEEEeCCCcEEEecCCCccEEEEcCCCCccchHHHhhccCCCCcEEEEEEeCCccCCCCCCCCCCCcceE
Q 006908          169 PRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEV  248 (626)
Q Consensus       169 ~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~ip~~~~l  248 (626)
                      ++.||.|++||+++ .+|++|+|+.    +.|.+|.|+++|||+++|.+|++|++++|.|||+.+||       +.+..+
T Consensus         3 i~~gd~V~v~Y~g~-~dG~~fdss~----~~f~~G~g~vipG~e~aL~Gm~~Ge~~~v~ipp~~aYG-------~~~~~l   70 (158)
T 3cgm_A            3 VGQDKVVTIRYTLQ-VEGEVLDQGE----LSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYG-------PHDPEG   70 (158)
T ss_dssp             CCTTEEEEEEEEEE-ETTEEEEEEE----EEEETTSSSSCHHHHHHHTTCBTTCEEEEEECGGGTTC-------CCCGGG
T ss_pred             CCCCCEEEEEEEEE-ECCEEEEeeE----EEEEECCCCcChHHHHHHcCCCCCCEEEEEECcHHHcC-------CCCcce
Confidence            56899999999999 9999999886    99999999999999999999999999999999999999       445677


Q ss_pred             EEEEEEeeEE
Q 006908          249 HFEVELVHLI  258 (626)
Q Consensus       249 ~~~v~l~~~~  258 (626)
                      ++.|.+..|.
T Consensus        71 v~~v~~~~f~   80 (158)
T 3cgm_A           71 VQVVPLSAFP   80 (158)
T ss_dssp             EEEEEGGGSC
T ss_pred             EEEEEHHHCC
Confidence            8888888873

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.32  E-value=1.8e-11  Score=118.93  Aligned_cols=101  Identities=15%  Similarity=0.266  Sum_probs=94.5

Q ss_pred             HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCC-CChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNP-QDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p-~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      ..+...|..++..|+|++|+..|++++.    +.| .+           ..+++++|.|+.++++|.+|+.++.+++.++
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~~~~~-----------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~   72 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLK----LTNNQD-----------SVTAYNCGVCADNIKKYKEAADYFDIAIKKN   72 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH----HTTTCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHh----ccCCCC-----------cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC
Confidence            6788899999999999999999999999    454 43           3578889999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      |.++.+++++|.++..+|++++|+..|+++++++|++
T Consensus        73 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~  109 (228)
T 4i17_A           73 YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGN  109 (228)
T ss_dssp             CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence            9999999999999999999999999999999999997

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.31  E-value=9.4e-12  Score=135.94  Aligned_cols=117  Identities=26%  Similarity=0.457  Sum_probs=106.3

Q ss_pred             HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (626)
Q Consensus       395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL  474 (626)
                      .+.+..+...|+.++++|+|++|+..|++|+.    +.|.+           ..+++|+|.||+++++|++|+.++.+|+
T Consensus         3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al   67 (477)
T 1wao_1            3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIE----LNPSN-----------AIYYGNRSLAYLRTECYGYALGDATRAI   67 (477)
T ss_dssp             HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----hCCcc-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            45677888999999999999999999999999    56655           5689999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006908          475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (626)
Q Consensus       475 ~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~  527 (626)
                      +++|.++.+++++|.+|..+|++++|++.|++|++++|++ ..+...+..+..
T Consensus        68 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~l~~~~~  119 (477)
T 1wao_1           68 ELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD-KDAKMKYQECNK  119 (477)
T ss_dssp             HSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-TTHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999997 567777766643

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.29  E-value=1.1e-11  Score=131.24  Aligned_cols=80  Identities=8%  Similarity=0.056  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006908          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (626)
Q Consensus       448 ~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~  527 (626)
                      .+|+|+|.++.++|+|.+|+.+|.++|+++|+++.+|+++|.++..+|++++|+.+|++|++++|++ ..++..+..+..
T Consensus       167 ~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~-~~a~~~lg~~l~  245 (382)
T 2h6f_A          167 QVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN-NSVWNQRYFVIS  245 (382)
T ss_dssp             HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHH
Confidence            4566666666666666666666666666666666666666666666666666666666666666665 455555555544


Q ss_pred             H
Q 006908          528 Q  528 (626)
Q Consensus       528 ~  528 (626)
                      .
T Consensus       246 ~  246 (382)
T 2h6f_A          246 N  246 (382)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.29  E-value=4.4e-12  Score=110.16  Aligned_cols=97  Identities=19%  Similarity=0.149  Sum_probs=81.9

Q ss_pred             ccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006908          410 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGM  489 (626)
Q Consensus       410 ~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~  489 (626)
                      ..|+|++|+..|++++.    +.+.+        +....+++++|.||+++|+|.+|+..+.++++++|+++.+++++|.
T Consensus         2 ~~g~~~~A~~~~~~al~----~~~~~--------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   69 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIA----SGLQG--------KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAM   69 (117)
T ss_dssp             -----CCCHHHHHHHHS----SCCCH--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHH----cCCCC--------ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            36889999999999998    43221        1235689999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 006908          490 AYMALGEFEEAQRDFEMMMKVDKSSEPDAT  519 (626)
Q Consensus       490 a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~  519 (626)
                      ++..+|++++|+..|++++.++|++ +.+.
T Consensus        70 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~   98 (117)
T 3k9i_A           70 VLYNLGRYEQGVELLLKIIAETSDD-ETIQ   98 (117)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHCCC-HHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCc-HHHH
Confidence            9999999999999999999999997 4443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.28  E-value=1.2e-11  Score=130.92  Aligned_cols=119  Identities=9%  Similarity=0.021  Sum_probs=105.6

Q ss_pred             HHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 006908          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE-CRKSIEACNKVL  474 (626)
Q Consensus       396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~-~~~A~~~~~~aL  474 (626)
                      ..+..+...|..+++.|+|++|+..|++||.    ++|.+           ..+|+|+|.++..+|+ |.+|+.+|.++|
T Consensus        95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~----l~P~~-----------~~a~~~~g~~l~~~g~d~~eAl~~~~~al  159 (382)
T 2h6f_A           95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIE----LNAAN-----------YTVWHFRRVLLKSLQKDLHEEMNYITAII  159 (382)
T ss_dssp             HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHCCChHHHHHHHHHHHH----hCccC-----------HHHHHHHHHHHHHcccCHHHHHHHHHHHH
Confidence            3567788899999999999999999999999    67776           5689999999999997 999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006908          475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (626)
Q Consensus       475 ~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~  530 (626)
                      +++|+++.+|+++|.++..+|++++|+.+|++|++++|+| ..++..+..+...+.
T Consensus       160 ~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~-~~a~~~lg~~~~~~g  214 (382)
T 2h6f_A          160 EEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN-YHAWQHRQWVIQEFK  214 (382)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHT
T ss_pred             HHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC-HHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999998 677777777665544

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.28  E-value=3.6e-11  Score=115.82  Aligned_cols=108  Identities=16%  Similarity=0.192  Sum_probs=93.0

Q ss_pred             hhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 006908          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK  482 (626)
Q Consensus       403 ~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~k  482 (626)
                      ..|..+++.|+|++|+..|++++.    +.|.+           ..+++++|.++..+|+|++|+.+|.++++++|+++.
T Consensus        59 ~lg~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~  123 (208)
T 3urz_A           59 ELALAYKKNRNYDKAYLFYKELLQ----KAPNN-----------VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA  123 (208)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence            489999999999999999999999    67776           458999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH-----------------------------------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006908          483 GLYRRGMAYMA-----------------------------------LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (626)
Q Consensus       483 a~~~~g~a~~~-----------------------------------lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~  527 (626)
                      +|+++|.+|+.                                   +|+|++|+.+|++|++++|++  .+...|.++..
T Consensus       124 a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~--~~~~~l~~i~~  201 (208)
T 3urz_A          124 ANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST--EAQKTLDKILR  201 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH--HHHHHHHHHHH
Confidence            88888877643                                   356889999999999999974  45556666543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.28  E-value=1.1e-10  Score=100.43  Aligned_cols=113  Identities=27%  Similarity=0.490  Sum_probs=101.0

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +..+...|..++..|+|++|+..|.+++.    ..|.+           ..+++++|.++.+++++.+|+..+.+++.++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   73 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALE----LDPNN-----------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD   73 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCcCc-----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            56677889999999999999999999998    34444           3578999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (626)
Q Consensus       478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~  526 (626)
                      |.+..+++.+|.++..+|++++|+..|++++.++|++ ..+...+..+.
T Consensus        74 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~  121 (125)
T 1na0_A           74 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAKQNLGNAK  121 (125)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHH
Confidence            9999999999999999999999999999999999997 56666666554

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.27  E-value=5.3e-11  Score=115.41  Aligned_cols=121  Identities=17%  Similarity=0.239  Sum_probs=105.6

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHc-----------CCHHHH
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL-----------GECRKS  466 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl-----------~~~~~A  466 (626)
                      +..+...|..+++.|++++|+..|++++.    +.|.+           ..+++++|.++.++           |++.+|
T Consensus        39 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~----~~P~~-----------~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A  103 (217)
T 2pl2_A           39 PEALYWLARTQLKLGLVNPALENGKTLVA----RTPRY-----------LGGYMVLSEAYVALYRQAEDRERGKGYLEQA  103 (217)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHhhhhhhhhcccccCHHHH
Confidence            45677899999999999999999999999    67776           45889999999999           999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006908          467 IEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESK  535 (626)
Q Consensus       467 ~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~  535 (626)
                      +..+.++++++|+++.+++++|.++..+|++++|+..|++|++++ ++ ..+...+..+.....+..+.
T Consensus       104 ~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~-~~~~~~la~~~~~~g~~~~A  170 (217)
T 2pl2_A          104 LSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DT-PEIRSALAELYLSMGRLDEA  170 (217)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC-HHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cc-hHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999999999999999999999999999999999 65 67888888776666555444

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.26  E-value=8.5e-11  Score=109.96  Aligned_cols=134  Identities=17%  Similarity=0.257  Sum_probs=98.0

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHH-----------------------HHhhhhhHHHHHHH
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGK-----------------------VFVGKRNLLHLNVA  454 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~-----------------------~~~~~~~~~~~Nla  454 (626)
                      +..+.+.|+.++++|+|++|+..|++|+.    +.|.+.+-..                       ........++.++|
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   80 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLK----ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILG   80 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence            55678899999999999999999999998    5676642110                       01112234566777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 006908          455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVES  534 (626)
Q Consensus       455 ~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~  534 (626)
                      .++...+++..|+..+.+++.++|.+..+++.+|.++..+|++++|+..|+++++++|.+ ..+...+..+.....+..+
T Consensus        81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF-IRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh-hhHHHHHHHHHHHCCCHHH
Confidence            777777777777777777777788888888888888888888888888888888888876 5677777777666555444


Q ss_pred             HH
Q 006908          535 KA  536 (626)
Q Consensus       535 ~~  536 (626)
                      ..
T Consensus       160 A~  161 (184)
T 3vtx_A          160 AV  161 (184)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.25  E-value=4e-11  Score=101.43  Aligned_cols=100  Identities=14%  Similarity=0.193  Sum_probs=92.2

Q ss_pred             HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006908          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (626)
Q Consensus       400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~  479 (626)
                      .+...|..++..|+|++|+..|++++.    ..|.+           ..++.++|.+++.+++|++|+..+.++++++|.
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~   72 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQ----LDPEE-----------SKYWLMKGKALYNLERYEEAVDCYNYVINVIED   72 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHH----hCcCC-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence            356788999999999999999999999    45554           357899999999999999999999999999999


Q ss_pred             --CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCC
Q 006908          480 --HVKGLYRRGMAYMAL-GEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       480 --~~ka~~~~g~a~~~l-g~~~eA~~~~~kAl~l~P~~  514 (626)
                        +..+++++|.++..+ |++++|++.|++++...|++
T Consensus        73 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           73 EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence              999999999999999 99999999999999999975

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.21  E-value=1.5e-10  Score=107.78  Aligned_cols=113  Identities=11%  Similarity=0.200  Sum_probs=98.7

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHH-HHHcCCH--HHHHHHHHHHH
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC-LLKLGEC--RKSIEACNKVL  474 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~-~~kl~~~--~~A~~~~~~aL  474 (626)
                      +..+...|..++..|+|++|+..|.+++.    +.|.+           ..++.++|.+ ++..+++  .+|+..+.+++
T Consensus        44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~la~~l~~~~~~~~~~~A~~~~~~al  108 (177)
T 2e2e_A           44 SEQWALLGEYYLWQNDYSNSLLAYRQALQ----LRGEN-----------AELYAALATVLYYQASQHMTAQTRAMIDKAL  108 (177)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHCSC-----------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCC-----------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            45677899999999999999999999999    45554           4588999999 8899999  99999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908          475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (626)
Q Consensus       475 ~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~  526 (626)
                      .++|.+..+++.+|.++..+|++++|+..|+++++++|++ ......+..+.
T Consensus       109 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~i~  159 (177)
T 2e2e_A          109 ALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR-INRTQLVESIN  159 (177)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT-SCHHHHHHHHH
T ss_pred             HhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC-ccHHHHHHHHH
Confidence            9999999999999999999999999999999999999987 34444444443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.21  E-value=1.1e-10  Score=111.61  Aligned_cols=132  Identities=13%  Similarity=0.184  Sum_probs=108.9

Q ss_pred             HHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006908          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (626)
Q Consensus       396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~  475 (626)
                      ..+..+...|+.++..|+|++|+..|++++.      + +           ..+++|+|.|+.++|+|.+|+..|.+++.
T Consensus         4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~------~-~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~   65 (213)
T 1hh8_A            4 VEAISLWNEGVLAADKKDWKGALDAFSAVQD------P-H-----------SRICFNIGCMYTILKNMTEAEKAFTRSIN   65 (213)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTSSS------C-C-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHcC------C-C-----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4566778999999999999999999998853      1 1           35899999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006908          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE---------------PDATAALSKLKKQRQEVESKARKQF  540 (626)
Q Consensus       476 ~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~---------------~~~~~~l~~l~~~~~~~~~~~~~~~  540 (626)
                      ++|.++.+++++|.++..+|++++|+..|++++++.|.+.               ..+...+..+.....+..+.. ..+
T Consensus        66 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~  144 (213)
T 1hh8_A           66 RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE-EQL  144 (213)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH-HHH
T ss_pred             hCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHH-HHH
Confidence            9999999999999999999999999999999999988752               256777777765555444433 344


Q ss_pred             HccccC
Q 006908          541 KGLFDK  546 (626)
Q Consensus       541 ~~~~~~  546 (626)
                      .+....
T Consensus       145 ~~al~~  150 (213)
T 1hh8_A          145 ALATSM  150 (213)
T ss_dssp             HHHHTT
T ss_pred             HHHHHc
Confidence            444443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.20  E-value=1.5e-10  Score=112.41  Aligned_cols=114  Identities=15%  Similarity=0.162  Sum_probs=101.2

Q ss_pred             HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006908          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (626)
Q Consensus       400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~  479 (626)
                      .+...|..++..|+|++|+..|++++.    ..|.+           ..++.++|.||.++|+|.+|+..+.++++++|+
T Consensus        44 ~~~~~~~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~  108 (228)
T 4i17_A           44 TAYNCGVCADNIKKYKEAADYFDIAIK----KNYNL-----------ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG  108 (228)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH----TTCSH-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHH----hCcch-----------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence            455689999999999999999999998    66654           468999999999999999999999999999999


Q ss_pred             CH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHH
Q 006908          480 HV-------KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS--SEPDATAALSKLKKQR  529 (626)
Q Consensus       480 ~~-------ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~--~~~~~~~~l~~l~~~~  529 (626)
                      +.       .+|+++|.++..+|++++|+..|++|++++|+  + ..+...+..+....
T Consensus       109 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~l~~~~~~~  166 (228)
T 4i17_A          109 NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWK-TDALYSLGVLFYNN  166 (228)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHH-HHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCccc-HHHHHHHHHHHHHH
Confidence            98       77999999999999999999999999999998  6 56777777665433

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.18  E-value=3.1e-10  Score=116.67  Aligned_cols=122  Identities=22%  Similarity=0.401  Sum_probs=106.5

Q ss_pred             HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006908          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (626)
Q Consensus       399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp  478 (626)
                      ......|..+++.|+|++|+..|++++.    ..|.+.       .....++.++|.|+.++|++.+|+..+.++++++|
T Consensus       235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  303 (359)
T 3ieg_A          235 NKLIESAEELIRDGRYTDATSKYESVMK----TEPSVA-------EYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP  303 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCSSH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCch-------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence            3445669999999999999999999999    455542       22345788999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 006908          479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEV  532 (626)
Q Consensus       479 ~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~  532 (626)
                      +++.+++++|.++..+|++++|+..|++|++++|++ ..++..|..+...+++.
T Consensus       304 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~~~~~  356 (359)
T 3ieg_A          304 DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEND-QQIREGLEKAQRLLKQS  356 (359)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-HHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999998 67888888887766543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.18  E-value=4.9e-10  Score=104.71  Aligned_cols=112  Identities=19%  Similarity=0.229  Sum_probs=85.9

Q ss_pred             HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHH-----------------------HHHhhhhhHHHHHHHH
Q 006908          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG-----------------------KVFVGKRNLLHLNVAA  455 (626)
Q Consensus       399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~-----------------------~~~~~~~~~~~~Nla~  455 (626)
                      ..+...|..+++.|++++|+..|.+++.    ..|.+..-.                       ....+....++.++|.
T Consensus        40 ~~~~~la~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~  115 (184)
T 3vtx_A           40 ETLLKLGKTYMDIGLPNDAIESLKKFVV----LDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGL  115 (184)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            3455566666666666666666666665    222221100                       0011222457899999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       456 ~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      ++.++|+|++|+..+.++++++|.++.+|+++|.+|..+|++++|+..|++|++++|++
T Consensus       116 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  174 (184)
T 3vtx_A          116 VYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK  174 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred             HHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence            99999999999999999999999999999999999999999999999999999999874

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.17  E-value=2.1e-10  Score=101.24  Aligned_cols=90  Identities=14%  Similarity=0.131  Sum_probs=81.5

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006908          446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (626)
Q Consensus       446 ~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l  525 (626)
                      .+..+.|+|.++++.|+|.+|+..|+++|+++|.++.+|+++|.++..+|++++|+.+|++|++++|++ ..+...+..+
T Consensus        12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~   90 (126)
T 4gco_A           12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF-IKGYIRKAAC   90 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh-hHHHHHHHHH
Confidence            356899999999999999999999999999999999999999999999999999999999999999998 6788888888


Q ss_pred             HHHHHHHHHHH
Q 006908          526 KKQRQEVESKA  536 (626)
Q Consensus       526 ~~~~~~~~~~~  536 (626)
                      ...+.+..+..
T Consensus        91 ~~~~~~~~~A~  101 (126)
T 4gco_A           91 LVAMREWSKAQ  101 (126)
T ss_dssp             HHHTTCHHHHH
T ss_pred             HHHCCCHHHHH
Confidence            77666555444

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.17  E-value=2.3e-11  Score=111.34  Aligned_cols=89  Identities=8%  Similarity=-0.043  Sum_probs=81.4

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (626)
Q Consensus       447 ~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~  526 (626)
                      ...++++|.+++++|+|++|+..|.+++.++|.++.+|+++|.++..+|+|++|+..|++|++++|++ +.+...+..+.
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~-~~~~~~lg~~~  114 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND-YTPVFHTGQCQ  114 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC-cHHHHHHHHHH
Confidence            45889999999999999999999999999999999999999999999999999999999999999998 67888888887


Q ss_pred             HHHHHHHHHH
Q 006908          527 KQRQEVESKA  536 (626)
Q Consensus       527 ~~~~~~~~~~  536 (626)
                      ..+.+..+..
T Consensus       115 ~~lg~~~eA~  124 (151)
T 3gyz_A          115 LRLKAPLKAK  124 (151)
T ss_dssp             HHTTCHHHHH
T ss_pred             HHcCCHHHHH
Confidence            7766655544

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.14  E-value=2.1e-11  Score=103.69  Aligned_cols=95  Identities=29%  Similarity=0.427  Sum_probs=77.3

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~  476 (626)
                      .+..+...|..++..|+|++|+..|++++.    +.|.+           ..+++|+|.|++++|+|.+|+.+|.+++++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   67 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT----AQPQN-----------PVGYSNKAMALIKLGEYTQAIQMCQQGLRY   67 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            356677888888888888888888888888    45554           357888888888888888888888888888


Q ss_pred             CCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006908          477 NPAH------VKGLYRRGMAYMALGEFEEAQRDFEM  506 (626)
Q Consensus       477 dp~~------~ka~~~~g~a~~~lg~~~eA~~~~~k  506 (626)
                      +|++      ..+++++|.++..+|++++|+..|++
T Consensus        68 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           68 TSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             CSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence            8888      88888888888888888777766554

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.14  E-value=3e-10  Score=108.70  Aligned_cols=102  Identities=9%  Similarity=0.094  Sum_probs=94.0

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +..+...|..+++.|+|++|+..|.+++.    +.|.+           ..+++|+|.|++++|+|.+|+.++.+++++.
T Consensus        37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~~~~-----------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  101 (213)
T 1hh8_A           37 SRICFNIGCMYTILKNMTEAEKAFTRSIN----RDKHL-----------AVAYFQRGMLYYQTEKYDLAIKDLKEALIQL  101 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCccc-----------hHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence            45778899999999999999999999999    45554           4589999999999999999999999999988


Q ss_pred             CCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          478 PAHV----------------KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       478 p~~~----------------ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      |.+.                .+++++|.++..+|++++|+..|++|++++|++
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A          102 RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence            8876                999999999999999999999999999999975

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.13  E-value=4e-10  Score=110.31  Aligned_cols=111  Identities=26%  Similarity=0.410  Sum_probs=81.4

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +..+...|..++..|+|++|+..|++++.    ..|.+           ..+++++|.|+.++|+|.+|+..+.++++++
T Consensus       139 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  203 (258)
T 3uq3_A          139 AEEARLEGKEYFTKSDWPNAVKAYTEMIK----RAPED-----------ARGYSNRAAALAKLMSFPEAIADCNKAIEKD  203 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHh----cCccc-----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            44566777777777888888888888777    34443           3467778888888888888888888888888


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHH
Q 006908          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD------KSSEPDATAALSK  524 (626)
Q Consensus       478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~------P~~~~~~~~~l~~  524 (626)
                      |+++.+++++|.++..+|++++|+..|+++++++      |++ ..+...|..
T Consensus       204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~-~~~~~~l~~  255 (258)
T 3uq3_A          204 PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA-REIDQLYYK  255 (258)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCch-HHHHHHHHH
Confidence            8888888888888888888888888888888877      664 445544443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.12  E-value=5.3e-10  Score=121.42  Aligned_cols=116  Identities=25%  Similarity=0.395  Sum_probs=103.3

Q ss_pred             HHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006908          394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV  473 (626)
Q Consensus       394 ~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~a  473 (626)
                      +.+.+..+...|+.+++.|+|.+|+..|++++.    ..| +           ..++.++|.|++++|+|.+|+..|.++
T Consensus         2 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p-~-----------~~~~~~la~~~~~~g~~~~A~~~~~~a   65 (514)
T 2gw1_A            2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALE----LKE-D-----------PVFYSNLSACYVSVGDLKKVVEMSTKA   65 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH----HCC-C-----------HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHh----cCc-c-----------HHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence            457889999999999999999999999999999    444 2           358999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006908          474 LDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (626)
Q Consensus       474 L~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l  525 (626)
                      ++++|+++.+++++|.++..+|++++|+..|++++.++|.+.......+..+
T Consensus        66 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  117 (514)
T 2gw1_A           66 LELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERN  117 (514)
T ss_dssp             HHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHH
T ss_pred             hccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHH
Confidence            9999999999999999999999999999999999999997654444444443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.11  E-value=5.4e-10  Score=121.86  Aligned_cols=120  Identities=11%  Similarity=0.060  Sum_probs=106.7

Q ss_pred             HHHHhhhchhhcc---------ccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHc--------C
Q 006908          399 EKIRVTGNRLFKE---------GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL--------G  461 (626)
Q Consensus       399 ~~~k~~Gn~~f~~---------g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl--------~  461 (626)
                      ..+...|..++..         |+|++|+..|++|+.    +.|.+           ..+|+++|.+|..+        +
T Consensus       171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~~~~~~~~~g  235 (474)
T 4abn_A          171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ----MDVLD-----------GRSWYILGNAYLSLYFNTGQNPK  235 (474)
T ss_dssp             HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHHHHhhccccc
Confidence            4566788888888         999999999999999    56666           45899999999999        9


Q ss_pred             CHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 006908          462 ECRKSIEACNKVLDANP---AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVES  534 (626)
Q Consensus       462 ~~~~A~~~~~~aL~~dp---~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~  534 (626)
                      +|++|+.+|.++++++|   .++.+|+++|.+|..+|++++|+..|++|++++|++ ..++..+..+...+.+..+
T Consensus       236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~a~~~l~~~~~~lg~~~e  310 (474)
T 4abn_A          236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW-PEPQQREQQLLEFLSRLTS  310 (474)
T ss_dssp             HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999   999999999999999999999999999999999998 6777777777666665443

>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5

Probab=99.11  E-value=1.3e-10  Score=124.30  Aligned_cols=87  Identities=18%  Similarity=0.295  Sum_probs=78.9

Q ss_pred             CCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCCCcEEEEEeeccccccCCCCCCCC
Q 006908           45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA  124 (626)
Q Consensus        45 p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge~~~~~ip~~~~~g~~~~~~~~  124 (626)
                      ++.||.|++||+++ .||+.|++++      +.|+.|.+|.|+++|||+++|.||++|++++|.||+..+||..+.    
T Consensus       158 ~~~gD~V~i~y~g~-~dG~~fd~~~------~~~~~~~lG~g~~ipgfee~L~G~k~Ge~~~v~v~~~~~yg~~~l----  226 (432)
T 1w26_A          158 VEAEDRVTIDFTGS-VDGEEFEGGK------ASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENL----  226 (432)
T ss_dssp             CCTTCEEEECEEEE-SSSCBCSSCC------CSSEEEETTSCCSCTTHHHHSSSCCSSCEEEEEEECCTTCSCTTT----
T ss_pred             CCCCCEEEEEEEEe-eCCeEccCCC------ccceEEEeCCCCcchHHHHHhCCCCCCCEEEEEECCchhhCCCCC----
Confidence            78999999999999 5999998775      468999999999999999999999999999999999999997665    


Q ss_pred             CCCCCCCceEEEEEEeeeecccc
Q 006908          125 PSTFPKDEELHFEIEMIDFAKAK  147 (626)
Q Consensus       125 ~~~i~~~~~lv~~v~l~~~~~~~  147 (626)
                           +|++++|+|+|+++....
T Consensus       227 -----ag~~~~F~V~v~~v~~~~  244 (432)
T 1w26_A          227 -----KGKAAKFAINLKKVEERE  244 (432)
T ss_dssp             -----SSCEEEEEEECCEECCEE
T ss_pred             -----CCceEEEEEEEEEEeccC
Confidence                 479999999999997543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.10  E-value=1.4e-09  Score=107.66  Aligned_cols=105  Identities=21%  Similarity=0.241  Sum_probs=97.7

Q ss_pred             HHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006908          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (626)
Q Consensus       396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~  475 (626)
                      ..+..+...|..++..|+|++|+..|++++.    ..|.+           ..++.++|.++..+|+|.+|+..+.+++.
T Consensus        41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~al~  105 (275)
T 1xnf_A           41 ERAQLLYERGVLYDSLGLRALARNDFSQALA----IRPDM-----------PEVFNYLGIYLTQAGNFDAAYEAFDSVLE  105 (275)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcccHHHHHHHHHHHHH----cCCCc-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            4577888999999999999999999999999    55655           45899999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 006908          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (626)
Q Consensus       476 ~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~  515 (626)
                      ++|.++.+++.+|.++..+|++++|+..|+++++++|++.
T Consensus       106 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  145 (275)
T 1xnf_A          106 LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP  145 (275)
T ss_dssp             HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence            9999999999999999999999999999999999999973

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.09  E-value=9.9e-10  Score=122.36  Aligned_cols=116  Identities=14%  Similarity=0.090  Sum_probs=106.0

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +..+...|..++..|+|++|+..|++|+.    +.|.+           ..+++++|.+|..+|+|++|+..+.++++++
T Consensus        23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   87 (568)
T 2vsy_A           23 FVAWLMLADAELGMGDTTAGEMAVQRGLA----LHPGH-----------PEAVARLGRVRWTQQRHAEAAVLLQQASDAA   87 (568)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHT----TSTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            56678899999999999999999999999    66665           4589999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 006908          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (626)
Q Consensus       478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~  529 (626)
                      |+++.+++++|.+|..+|++++|++.|++|++++|++ ..+...+..+....
T Consensus        88 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~  138 (568)
T 2vsy_A           88 PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE-PYITAQLLNWRRRL  138 (568)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999997 67777777776665

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.08  E-value=1.3e-09  Score=94.60  Aligned_cols=115  Identities=24%  Similarity=0.425  Sum_probs=99.2

Q ss_pred             HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006908          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (626)
Q Consensus       400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~  479 (626)
                      .+...|..++..|++++|+..|.+++.    ..|.+           ..++.++|.++...+++.+|+..+.+++..+|.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~   67 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALE----LDPRS-----------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR   67 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHH----cCCcc-----------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence            456788899999999999999999998    34444           357889999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006908          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (626)
Q Consensus       480 ~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~  530 (626)
                      +..+++.+|.++...|++++|+..|++++.+.|.+ ..+...+..+.....
T Consensus        68 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~  117 (136)
T 2fo7_A           68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-AEAWYNLGNAYYKQG  117 (136)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTT
T ss_pred             chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999987 556666665544433

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.08  E-value=2e-09  Score=92.63  Aligned_cols=83  Identities=14%  Similarity=0.195  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 006908          416 LAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG  495 (626)
Q Consensus       416 ~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg  495 (626)
                      .|+..|++++.    ..|.+           ..+++++|.+++.+|+|.+|+..|.+++.++|.++.+|+++|.++..+|
T Consensus         3 ~a~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g   67 (115)
T 2kat_A            3 AITERLEAMLA----QGTDN-----------MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQG   67 (115)
T ss_dssp             CHHHHHHHHHT----TTCCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcC
Confidence            58889999998    67766           4589999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCC
Q 006908          496 EFEEAQRDFEMMMKVDKS  513 (626)
Q Consensus       496 ~~~eA~~~~~kAl~l~P~  513 (626)
                      ++++|+..|+++++++|.
T Consensus        68 ~~~~A~~~~~~al~~~~~   85 (115)
T 2kat_A           68 DRAGARQAWESGLAAAQS   85 (115)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhccc
Confidence            999999999999999874

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.08  E-value=8.6e-10  Score=109.55  Aligned_cols=105  Identities=11%  Similarity=0.202  Sum_probs=94.4

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +..+...|..+++.|+|++|+..|++++.    ..|.++        ....+++++|.||+++|+|.+|+..+.+++.+.
T Consensus        15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~----~~p~~~--------~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~   82 (261)
T 3qky_A           15 PQEAFERAMEFYNQGKYDRAIEYFKAVFT----YGRTHE--------WAADAQFYLARAYYQNKEYLLAASEYERFIQIY   82 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHGG----GCSCST--------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHH----hCCCCc--------chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC
Confidence            56778899999999999999999999999    555542        224689999999999999999999999999998


Q ss_pred             CCC---HHHHHHHHHHHHH--------cCCHHHHHHHHHHHHhcCCCC
Q 006908          478 PAH---VKGLYRRGMAYMA--------LGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       478 p~~---~ka~~~~g~a~~~--------lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      |++   ..++|++|.++..        +|++++|+..|+++++++|++
T Consensus        83 p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~  130 (261)
T 3qky_A           83 QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNH  130 (261)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTC
T ss_pred             CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCc
Confidence            854   6799999999999        999999999999999999987

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.07  E-value=1e-09  Score=106.70  Aligned_cols=106  Identities=20%  Similarity=0.297  Sum_probs=92.6

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +..+...|..+++.|+|++|+..|++++.    ..|.++        ....+++++|.|++++|+|.+|+..+.++++.+
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~----~~p~~~--------~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~   71 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDN----RYPFGP--------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN   71 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTST--------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCh--------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence            45677889999999999999999999998    445432        123588999999999999999999999999999


Q ss_pred             CCCHH---HHHHHHHHHHH------------------cCCHHHHHHHHHHHHhcCCCCH
Q 006908          478 PAHVK---GLYRRGMAYMA------------------LGEFEEAQRDFEMMMKVDKSSE  515 (626)
Q Consensus       478 p~~~k---a~~~~g~a~~~------------------lg~~~eA~~~~~kAl~l~P~~~  515 (626)
                      |++..   |+|++|.++..                  +|++++|+..|+++++..|++.
T Consensus        72 P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~  130 (225)
T 2yhc_A           72 PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQ  130 (225)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCT
T ss_pred             cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCCh
Confidence            99875   89999999987                  5789999999999999999973

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.07  E-value=9.9e-10  Score=119.74  Aligned_cols=115  Identities=13%  Similarity=0.117  Sum_probs=105.0

Q ss_pred             HHHHHhhhchhhccccH-HHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908          398 AEKIRVTGNRLFKEGKF-ELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~-~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~  476 (626)
                      +..+...|..++..|+| ++|+..|++|+.    +.|.+           ..+|+++|.||+++|+|.+|+.+|.+++++
T Consensus       102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~  166 (474)
T 4abn_A          102 AQALMLKGKALNVTPDYSPEAEVLLSKAVK----LEPEL-----------VEAWNQLGEVYWKKGDVTSAHTCFSGALTH  166 (474)
T ss_dssp             HHHHHHHHHHHTSSSSCCHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHh----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            56778899999999999 999999999999    56665           458999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 006908          477 NPAHVKGLYRRGMAYMAL---------GEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (626)
Q Consensus       477 dp~~~ka~~~~g~a~~~l---------g~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~  529 (626)
                      +|+ ..+++++|.++..+         |++++|+..|++|++++|++ ..++..+..+....
T Consensus       167 ~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~  226 (474)
T 4abn_A          167 CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD-GRSWYILGNAYLSL  226 (474)
T ss_dssp             CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHH
T ss_pred             CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHH
Confidence            998 79999999999999         99999999999999999998 67888887776555

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.07  E-value=2.4e-09  Score=98.75  Aligned_cols=120  Identities=19%  Similarity=0.248  Sum_probs=102.2

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +..+...|..++..|++++|+..|.+++.    ..|.+           ..++.++|.++..++++.+|+..+.+++..+
T Consensus        42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~  106 (186)
T 3as5_A           42 VDVALHLGIAYVKTGAVDRGTELLERSLA----DAPDN-----------VKVATVLGLTYVQVQKYDLAVPLLIKVAEAN  106 (186)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            44566788888999999999999999998    34444           4578999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 006908          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVE  533 (626)
Q Consensus       478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~  533 (626)
                      |.+..+++.+|.++..+|++++|+..|+++++++|.+ ..+...+..+........
T Consensus       107 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~  161 (186)
T 3as5_A          107 PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE-GKVHRAIAFSYEQMGRHE  161 (186)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHH
T ss_pred             cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc-hHHHHHHHHHHHHcCCHH
Confidence            9999999999999999999999999999999999987 567777776665544333

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.07  E-value=4e-10  Score=104.78  Aligned_cols=130  Identities=12%  Similarity=0.110  Sum_probs=104.1

Q ss_pred             HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006908          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (626)
Q Consensus       400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~  479 (626)
                      ++...++.++..|+|++|+..|++++.    ..|.+           ..+++++|.+++.+++|.+|+..+.+++.++|.
T Consensus        12 ~~~~~~~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~   76 (177)
T 2e2e_A           12 RQRDPLHQFASQQNPEAQLQALQDKIR----ANPQN-----------SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE   76 (177)
T ss_dssp             CSSTTTCCCC-----CCCCHHHHHHHH----HCCSC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS
T ss_pred             HHhhhhhhhhhccCHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            344667888999999999999999999    56655           458999999999999999999999999999999


Q ss_pred             CHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC
Q 006908          480 HVKGLYRRGMA-YMALGEF--EEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDK  546 (626)
Q Consensus       480 ~~ka~~~~g~a-~~~lg~~--~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  546 (626)
                      ++.+++++|.+ +...|++  ++|+..|+++++++|++ ..+...+..+........+.. ..+.+.+..
T Consensus        77 ~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~-~~~~~al~~  144 (177)
T 2e2e_A           77 NAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE-ITALMLLASDAFMQANYAQAI-ELWQKVMDL  144 (177)
T ss_dssp             CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHH-HHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcccHHHHH-HHHHHHHhh
Confidence            99999999999 8899999  99999999999999997 677777877766655544433 344444443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.06  E-value=3e-10  Score=103.20  Aligned_cols=89  Identities=11%  Similarity=0.072  Sum_probs=79.2

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (626)
Q Consensus       447 ~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~  526 (626)
                      ...++++|.+++..|+|.+|+..+.+++.++|.++.+|+.+|.++..+|+|++|+..|++|+.++|++ ..+...+..+.
T Consensus        21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~-~~~~~~lg~~~   99 (148)
T 2vgx_A           21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE-PRFPFHAAECL   99 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-THHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-chHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999998 67777787776


Q ss_pred             HHHHHHHHHH
Q 006908          527 KQRQEVESKA  536 (626)
Q Consensus       527 ~~~~~~~~~~  536 (626)
                      ....+..+..
T Consensus       100 ~~~g~~~~A~  109 (148)
T 2vgx_A          100 LQXGELAEAE  109 (148)
T ss_dssp             HHTTCHHHHH
T ss_pred             HHcCCHHHHH
Confidence            6555444433

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.05  E-value=2.4e-09  Score=114.41  Aligned_cols=119  Identities=24%  Similarity=0.420  Sum_probs=104.2

Q ss_pred             HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006908          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (626)
Q Consensus       400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~  479 (626)
                      .+...|..+++.|+|++|+..|++++.    +.|.+..       ....++.++|.++.++|++.+|+..|.+++.++|+
T Consensus       259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~----~~p~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~  327 (450)
T 2y4t_A          259 KLIESAEELIRDGRYTDATSKYESVMK----TEPSIAE-------YTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD  327 (450)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHH----HCCSSHH-------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCcchH-------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            345569999999999999999999999    5555422       23458899999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006908          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (626)
Q Consensus       480 ~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~  530 (626)
                      ++.+|+.+|.++..+|++++|+..|+++++++|++ ..+...+..+.....
T Consensus       328 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~  377 (450)
T 2y4t_A          328 NVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND-QQIREGLEKAQRLLK  377 (450)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC-HHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcch-HHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999998 678878877765544

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.05  E-value=2.4e-09  Score=104.62  Aligned_cols=131  Identities=16%  Similarity=0.164  Sum_probs=107.0

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhH---------------HHHHhhhhhHHHHHHHHHHHHcCC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE---------------GKVFVGKRNLLHLNVAACLLKLGE  462 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee---------------~~~~~~~~~~~~~Nla~~~~kl~~  462 (626)
                      +..+...|..++..|+|++|+..|++++..    .|.....               .....+....++.++|.+++.+|+
T Consensus        79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (258)
T 3uq3_A           79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTE----HRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD  154 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhc----CchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence            677888999999999999999999999983    3321100               000122345689999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 006908          463 CRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVE  533 (626)
Q Consensus       463 ~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~  533 (626)
                      |.+|+..+.+++.++|.++.+++++|.++..+|++++|+..|+++++++|++ ..+...+..+.....+..
T Consensus       155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~g~~~  224 (258)
T 3uq3_A          155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF-VRAYIRKATAQIAVKEYA  224 (258)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH-HHHHHHHHHHHHHHhhHH
Confidence            9999999999999999999999999999999999999999999999999997 567777776665544433

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.03  E-value=3e-10  Score=129.62  Aligned_cols=118  Identities=14%  Similarity=0.122  Sum_probs=78.3

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +..+...|..++..|+|++|+..|++++.    ..|.+           ..+|+++|.+++++|+|++|+.+|.+||+++
T Consensus       433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~  497 (681)
T 2pzi_A          433 VELPLMEVRALLDLGDVAKATRKLDDLAE----RVGWR-----------WRLVWYRAVAELLTGDYDSATKHFTEVLDTF  497 (681)
T ss_dssp             SHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HHCCC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHhc----cCcch-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            55677778888888888888888888887    45555           3466666666666666666666666666666


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 006908          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEV  532 (626)
Q Consensus       478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~  532 (626)
                      |+++.+|+++|.++..+|+|++ +.+|++|++++|++ ..+...+..+...+.+.
T Consensus       498 P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~-~~a~~~lg~~~~~~g~~  550 (681)
T 2pzi_A          498 PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV-ISAAFGLARARSAEGDR  550 (681)
T ss_dssp             TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC-HHHHHHHHHHHHHTTCH
T ss_pred             CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch-HHHHHHHHHHHHHcCCH
Confidence            6666666666666666666666 66666666666665 45555555555444433

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.03  E-value=2.7e-09  Score=98.34  Aligned_cols=120  Identities=17%  Similarity=0.184  Sum_probs=104.9

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~  476 (626)
                      .+..+...|..++..|++++|+..|++++.    ..|.+           ..++.++|.++..++++.+|+..+.+++.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~   71 (186)
T 3as5_A            7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYD----ADAFD-----------VDVALHLGIAYVKTGAVDRGTELLERSLAD   71 (186)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTTTCC----TTSCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCccC-----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            466778899999999999999999999987    55554           458899999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 006908          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEV  532 (626)
Q Consensus       477 dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~  532 (626)
                      +|.+..+++.+|.++...|++++|+..|++++.++|.+ ..+...+..+.......
T Consensus        72 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~  126 (186)
T 3as5_A           72 APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN-FNVRFRLGVALDNLGRF  126 (186)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCH
T ss_pred             CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh-HHHHHHHHHHHHHcCcH
Confidence            99999999999999999999999999999999999987 56666666665444433

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.03  E-value=3.9e-10  Score=128.66  Aligned_cols=112  Identities=15%  Similarity=0.120  Sum_probs=101.7

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +..+...|..++..|+|++|+..|++|+.    +.|.+           ..+++|+|.|+.++|+|++ +.+|++|++++
T Consensus       467 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~----l~P~~-----------~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~  530 (681)
T 2pzi_A          467 WRLVWYRAVAELLTGDYDSATKHFTEVLD----TFPGE-----------LAPKLALAATAELAGNTDE-HKFYQTVWSTN  530 (681)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HSTTC-----------SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------hHHHHHHHHHHHHcCChHH-HHHHHHHHHhC
Confidence            34667889999999999999999999999    67766           4589999999999999999 99999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (626)
Q Consensus       478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~  526 (626)
                      |+++.+|+++|.++..+|++++|+++|++|++++|++ ..++..+..+.
T Consensus       531 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-~~a~~~~~~~~  578 (681)
T 2pzi_A          531 DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHF-TTARLTSAVTL  578 (681)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTH-HHHHHHHHHHT
T ss_pred             CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCccc-HHHHHHHHHHH
Confidence            9999999999999999999999999999999999996 56776666664

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.02  E-value=2.3e-09  Score=111.51  Aligned_cols=118  Identities=15%  Similarity=0.086  Sum_probs=97.3

Q ss_pred             hhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 006908          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK  482 (626)
Q Consensus       403 ~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~k  482 (626)
                      ..|..+...|++++|+..|++++.    ..|...         ...+++++|.++.++|+|.+|+..+.++++++|.++.
T Consensus       182 ~l~~~~~~~g~~~~A~~~~~~al~----~~p~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  248 (365)
T 4eqf_A          182 RMSKSPVDSSVLEGVKELYLEAAH----QNGDMI---------DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYS  248 (365)
T ss_dssp             -------CCHHHHHHHHHHHHHHH----HSCSSC---------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHH----hCcCcc---------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            348889999999999999999999    455410         1458899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 006908          483 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVES  534 (626)
Q Consensus       483 a~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~  534 (626)
                      +|+++|.++..+|++++|+..|+++++++|++ ..+...+..+.....+..+
T Consensus       249 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~  299 (365)
T 4eqf_A          249 LWNRLGATLANGDRSEEAVEAYTRALEIQPGF-IRSRYNLGISCINLGAYRE  299 (365)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCCHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHCCCHHH
Confidence            99999999999999999999999999999997 6777788777665554443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.01  E-value=4.8e-09  Score=104.06  Aligned_cols=120  Identities=20%  Similarity=0.262  Sum_probs=101.1

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHH--------cCCHHHHHHH
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK--------LGECRKSIEA  469 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~k--------l~~~~~A~~~  469 (626)
                      +..+...|..+++.|+|++|+..|++++.    ..|.++.        ...+++++|.|+++        ++++.+|+..
T Consensus        52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~----~~p~~~~--------~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~  119 (261)
T 3qky_A           52 ADAQFYLARAYYQNKEYLLAASEYERFIQ----IYQIDPR--------VPQAEYERAMCYYKLSPPYELDQTDTRKAIEA  119 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCTT--------HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHH----HCCCCch--------hHHHHHHHHHHHHHhcccccccchhHHHHHHH
Confidence            56678899999999999999999999999    4554421        24578999999999        9999999999


Q ss_pred             HHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHH
Q 006908          470 CNKVLDANPAHVKGL-----------------YRRGMAYMALGEFEEAQRDFEMMMKVDKSSE--PDATAALSKLKKQR  529 (626)
Q Consensus       470 ~~~aL~~dp~~~ka~-----------------~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~--~~~~~~l~~l~~~~  529 (626)
                      +.+++..+|++..+.                 +.+|.+|..+|+|++|+..|+++++..|++.  ..+...+..+...+
T Consensus       120 ~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~  198 (261)
T 3qky_A          120 FQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAY  198 (261)
T ss_dssp             HHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence            999999999986555                 9999999999999999999999999999852  34555666555443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.01  E-value=3.8e-09  Score=108.41  Aligned_cols=110  Identities=20%  Similarity=0.375  Sum_probs=99.7

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +..+...|+.++..|+|++|+..|++++.    ..|.+           ..+++++|.|++.+|+|.+|+..+.+++.++
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~----~~p~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~   67 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVD----GDPDN-----------YIAYYRRATVFLAMGKSKAALPDLTKVIALK   67 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCccc-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            56788999999999999999999999999    55655           4589999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCHHHHHHHHH
Q 006908          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK---SSEPDATAALS  523 (626)
Q Consensus       478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P---~~~~~~~~~l~  523 (626)
                      |.+..+++.+|.++..+|++++|+..|+++++++|   ++ ..+...+.
T Consensus        68 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~  115 (359)
T 3ieg_A           68 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEE-KEAESQLV  115 (359)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHH-HHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccCh-HHHHHHHH
Confidence            99999999999999999999999999999999999   65 45555553

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.01  E-value=1.8e-09  Score=118.18  Aligned_cols=111  Identities=29%  Similarity=0.491  Sum_probs=98.8

Q ss_pred             CCChhhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHH
Q 006908          388 GLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI  467 (626)
Q Consensus       388 ~~~~~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~  467 (626)
                      .++.++....+..+...|+.+++.|+|++|+..|++++.    ..|.+           ..+++++|.||+++|+|.+|+
T Consensus        15 ~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~la~~~~~~g~~~~A~   79 (537)
T 3fp2_A           15 GLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIE----LDPNE-----------PVFYSNISACYISTGDLEKVI   79 (537)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh----hCCCC-----------cHHHHHHHHHHHHcCCHHHHH
Confidence            467788888999999999999999999999999999999    56665           468999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          468 EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       468 ~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      ..|.+++.++|+++.+++++|.++..+|++++|+..|+ ++.++|+.
T Consensus        80 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~  125 (537)
T 3fp2_A           80 EFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDF  125 (537)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCC
Confidence            99999999999999999999999999999999999995 99998875

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.00  E-value=1.6e-09  Score=112.73  Aligned_cols=102  Identities=23%  Similarity=0.409  Sum_probs=94.0

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +..+...|..++..|+|++|+..|++++.    ..|.+           ..+++++|.++.++|+|.+|+..+.++++++
T Consensus       213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  277 (365)
T 4eqf_A          213 PDLQTGLGVLFHLSGEFNRAIDAFNAALT----VRPED-----------YSLWNRLGATLANGDRSEEAVEAYTRALEIQ  277 (365)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            44567789999999999999999999999    55655           4589999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      |+++.+++++|.+|..+|++++|+..|++|++++|++
T Consensus       278 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  314 (365)
T 4eqf_A          278 PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKS  314 (365)
T ss_dssp             TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred             CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999999999999999998873

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.00  E-value=6.3e-09  Score=100.91  Aligned_cols=117  Identities=15%  Similarity=0.107  Sum_probs=84.2

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +..+...|..++..|++++|+..|.+++.    ..|.+           ..++.++|.++..+|++.+|+..+.+++.++
T Consensus        57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  121 (243)
T 2q7f_A           57 AIPYINFANLLSSVNELERALAFYDKALE----LDSSA-----------ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG  121 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCcc-----------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            34556677777888888888888888887    34433           3467777777777888888888888887777


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006908          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (626)
Q Consensus       478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~  530 (626)
                      |.+..+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+.....
T Consensus       122 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~  173 (243)
T 2q7f_A          122 MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND-TEARFQFGMCLANEG  173 (243)
T ss_dssp             CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc-HHHHHHHHHHHHHcC
Confidence            7777777778888888888888888888887777776 455555555544333

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.00  E-value=2e-09  Score=104.52  Aligned_cols=120  Identities=18%  Similarity=0.248  Sum_probs=88.1

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~  476 (626)
                      .+..+...|..++..|+|++|+..|.+++.    ..|.+           ..++.++|.++.+++++.+|+..+.+++.+
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   86 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIE----ENKED-----------AIPYINFANLLSSVNELERALAFYDKALEL   86 (243)
T ss_dssp             --------------------CCTTHHHHHT----TCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHH----hCccc-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            466778899999999999999999999998    56655           458899999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 006908          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEV  532 (626)
Q Consensus       477 dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~  532 (626)
                      +|.+..+++.+|.++..+|++++|+..|+++++++|.+ ..+...+..+.....+.
T Consensus        87 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~  141 (243)
T 2q7f_A           87 DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN-GDLFYMLGTVLVKLEQP  141 (243)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS-HHHHHHHHHHHHHTSCH
T ss_pred             CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhccH
Confidence            99999999999999999999999999999999999987 56666666665444433

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.00  E-value=3.5e-09  Score=115.32  Aligned_cols=138  Identities=11%  Similarity=0.041  Sum_probs=109.1

Q ss_pred             hhhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHH
Q 006908          391 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEAC  470 (626)
Q Consensus       391 ~~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~  470 (626)
                      +.++++.+..+.+.+..+..+|+|++|+..|+++|.....+...+       +...+..++|+|.+|..+|+|++|+..+
T Consensus       302 v~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~-------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~  374 (490)
T 3n71_A          302 VKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADT-------NLYVLRLLSIASEVLSYLQAYEEASHYA  374 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTT-------SHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            455667788888888888999999999999999999776654433       3446789999999999999999999999


Q ss_pred             HHHHHhC-----CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHH---HHHHHHHHHHHHHHHH
Q 006908          471 NKVLDAN-----PA---HVKGLYRRGMAYMALGEFEEAQRDFEMMMKV-----DKSSEPDA---TAALSKLKKQRQEVES  534 (626)
Q Consensus       471 ~~aL~~d-----p~---~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l-----~P~~~~~~---~~~l~~l~~~~~~~~~  534 (626)
                      .++|++.     |+   -+.+++++|.+|..+|+|++|+..|++|+++     .|++ +.+   ...|..+...+..+++
T Consensus       375 ~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H-p~~~~~~~~l~~~~~e~~~~~~  453 (490)
T 3n71_A          375 RRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH-PITKDLEAMRMQTEMELRMFRQ  453 (490)
T ss_dssp             HHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHH
Confidence            9999763     44   4678999999999999999999999999986     5665 443   3445555544444444


Q ss_pred             HH
Q 006908          535 KA  536 (626)
Q Consensus       535 ~~  536 (626)
                      .+
T Consensus       454 ae  455 (490)
T 3n71_A          454 NE  455 (490)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.00  E-value=1.2e-09  Score=96.39  Aligned_cols=68  Identities=13%  Similarity=0.251  Sum_probs=65.4

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       447 ~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      +.++.|+|.++++.|+|++|+.+|.+||+++|+++.+|+++|.+|..+|+|++|+.+|++|++++|++
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~   75 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET   75 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc
Confidence            56788999999999999999999999999999999999999999999999999999999999998865

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.00  E-value=1.8e-09  Score=107.10  Aligned_cols=113  Identities=14%  Similarity=0.163  Sum_probs=83.8

Q ss_pred             HhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 006908          402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV  481 (626)
Q Consensus       402 k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~  481 (626)
                      ...|..++..|+|++|+..|.+++. ..    .+       ......+|.++|.|+..+|++.+|+..+.++++++|.++
T Consensus        41 ~~l~~~~~~~~~~~~A~~~~~~a~~-~~----~~-------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~  108 (272)
T 3u4t_A           41 NRRAVCYYELAKYDLAQKDIETYFS-KV----NA-------TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL  108 (272)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHT-TS----CT-------TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHh-cc----Cc-------hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH
Confidence            3455555556666666666666555 11    11       112345688999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH-HHHH
Q 006908          482 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS-KLKK  527 (626)
Q Consensus       482 ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~-~l~~  527 (626)
                      .+++.+|.++..+|++++|+..|+++++++|.+ ..+...+. .+..
T Consensus       109 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~  154 (272)
T 3u4t_A          109 DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD-PKVFYELGQAYYY  154 (272)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc-HHHHHHHHHHHHH
Confidence            999999999999999999999999999998887 56666666 4433

>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5

Probab=99.00  E-value=8.5e-10  Score=117.94  Aligned_cols=86  Identities=17%  Similarity=0.162  Sum_probs=77.9

Q ss_pred             CCCCCCCeEEEEEEEEeCCCcEEEecCCCccEEEEcCCCCccchHHHhhccCCCCcEEEEEEeCCccCCCCCCCCCCCcc
Q 006908          167 ETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCE  246 (626)
Q Consensus       167 ~~~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~ip~~~  246 (626)
                      ..+..||.|++||+++ .+|+.|+++. +.|+.|.+|.|+++|||+++|.||++|+++.|.||+..+||...    .++.
T Consensus       156 ~~~~~gD~V~i~y~g~-~dG~~fd~~~-~~~~~~~lG~g~~ipgfee~L~G~k~Ge~~~v~v~~~~~yg~~~----lag~  229 (432)
T 1w26_A          156 GAVEAEDRVTIDFTGS-VDGEEFEGGK-ASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAEN----LKGK  229 (432)
T ss_dssp             SCCCTTCEEEECEEEE-SSSCBCSSCC-CSSEEEETTSCCSCTTHHHHSSSCCSSCEEEEEEECCTTCSCTT----TSSC
T ss_pred             CCCCCCCEEEEEEEEe-eCCeEccCCC-ccceEEEeCCCCcchHHHHHhCCCCCCCEEEEEECCchhhCCCC----CCCc
Confidence            5689999999999997 5999999776 78999999999999999999999999999999999999999653    2568


Q ss_pred             eEEEEEEEeeEE
Q 006908          247 EVHFEVELVHLI  258 (626)
Q Consensus       247 ~l~~~v~l~~~~  258 (626)
                      +++|+|+|+++.
T Consensus       230 ~~~F~V~v~~v~  241 (432)
T 1w26_A          230 AAKFAINLKKVE  241 (432)
T ss_dssp             EEEEEEECCEEC
T ss_pred             eEEEEEEEEEEe
Confidence            999999999984

>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A

Probab=98.99  E-value=3.3e-10  Score=119.51  Aligned_cols=88  Identities=18%  Similarity=0.312  Sum_probs=77.3

Q ss_pred             CCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCCCcEEEEEeeccccccCCCCCCC
Q 006908           44 TPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVA  123 (626)
Q Consensus        44 ~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge~~~~~ip~~~~~g~~~~~~~  123 (626)
                      .++.||.|++||+++ .||+.|+++.      +.|+.|.+|.|+++|||+++|.||++|++++|.|++...||..+.   
T Consensus       160 ~~~~gD~V~i~y~g~-~dG~~fd~~~------~~~~~~~lG~g~~ipgfee~L~Gmk~Ge~~~v~v~fp~dy~~~~l---  229 (392)
T 1t11_A          160 AAENGKRVSIDFVGS-IDGVEFEGGK------AENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAENL---  229 (392)
T ss_dssp             CCCTTCEEEEEEEEE-SSSSCCTTCE------EEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTTT---
T ss_pred             CCCCCCEEEEEEEEE-ECCEEccCCC------ccceEEEecCCCcchhHHHHhCCCCCCCEEEEEEeCccccccCCC---
Confidence            378999999999999 5999998764      469999999999999999999999999999999986678886654   


Q ss_pred             CCCCCCCCceEEEEEEeeeecccc
Q 006908          124 APSTFPKDEELHFEIEMIDFAKAK  147 (626)
Q Consensus       124 ~~~~i~~~~~lv~~v~l~~~~~~~  147 (626)
                            +|++++|+|+|+++....
T Consensus       230 ------aGk~~~F~V~v~~i~~~~  247 (392)
T 1t11_A          230 ------KGKAAKFAIKVNKVEARE  247 (392)
T ss_dssp             ------SSCEEEECCCEEEEEEEE
T ss_pred             ------CCCeEEEEEEEEEEEcCC
Confidence                  489999999999997543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.98  E-value=4.7e-09  Score=91.61  Aligned_cols=88  Identities=16%  Similarity=0.136  Sum_probs=78.6

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (626)
Q Consensus       447 ~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~  526 (626)
                      +..+.++|.++++.|+|.+|+..+.+++.++|.++.+|+++|.++..+|+|++|+.+|++|++++|++ ..+...+..+.
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~   82 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF-VRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999998 67777777776


Q ss_pred             HHHHHHHHH
Q 006908          527 KQRQEVESK  535 (626)
Q Consensus       527 ~~~~~~~~~  535 (626)
                      ....+..+.
T Consensus        83 ~~~~~~~~A   91 (126)
T 3upv_A           83 IAVKEYASA   91 (126)
T ss_dssp             HHTTCHHHH
T ss_pred             HHHhCHHHH
Confidence            655544433

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.98  E-value=7.9e-09  Score=90.28  Aligned_cols=95  Identities=13%  Similarity=0.098  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006908          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (626)
Q Consensus       448 ~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~  527 (626)
                      ..++++|.++++.|+|.+|+..+.++++++|+++.+|+.+|.++..+|++++|+..|++|++++|++ ..+...|..+..
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~~~la~~~~   96 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-IAVHAALAVSHT   96 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHH
Confidence            3578899999999999999999999999999999999999999999999999999999999999998 678888888877


Q ss_pred             HHHHHHHHHHHHHHccc
Q 006908          528 QRQEVESKARKQFKGLF  544 (626)
Q Consensus       528 ~~~~~~~~~~~~~~~~~  544 (626)
                      ...+..+... .+.+..
T Consensus        97 ~~g~~~~A~~-~~~~al  112 (121)
T 1hxi_A           97 NEHNANAALA-SLRAWL  112 (121)
T ss_dssp             HHHHHHHHHH-HHHHHH
T ss_pred             HcCCHHHHHH-HHHHHH
Confidence            6666555443 444433

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.98  E-value=3.5e-09  Score=107.62  Aligned_cols=112  Identities=21%  Similarity=0.257  Sum_probs=62.0

Q ss_pred             HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHH-------------------HHH------hhhhhHHHHHH
Q 006908          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG-------------------KVF------VGKRNLLHLNV  453 (626)
Q Consensus       399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~-------------------~~~------~~~~~~~~~Nl  453 (626)
                      ..+...|..+.+.|++++|+..|++++.    ..|++....                   ..+      .+....+++|+
T Consensus       131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~----~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~l  206 (291)
T 3mkr_A          131 ECMAMTVQILLKLDRLDLARKELKKMQD----QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQ  206 (291)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHh----hCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            3455567777777788888888887776    344331000                   000      00112345555


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcCCCC
Q 006908          454 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEE-AQRDFEMMMKVDKSS  514 (626)
Q Consensus       454 a~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~e-A~~~~~kAl~l~P~~  514 (626)
                      |.|+.++|+|++|+..+.++|.++|+++.+++++|.++..+|++++ |..+++++++++|++
T Consensus       207 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~  268 (291)
T 3mkr_A          207 AACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH  268 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCC
Confidence            5566666666666666666666666566666666655555555544 345555555565555

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.98  E-value=2.6e-09  Score=110.76  Aligned_cols=101  Identities=22%  Similarity=0.366  Sum_probs=74.1

Q ss_pred             HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006908          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (626)
Q Consensus       399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp  478 (626)
                      ..+...|..+++.|+|++|+..|++++.    +.|.+           ..+++++|.++.++|++.+|+..+.+++.++|
T Consensus       218 ~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  282 (368)
T 1fch_A          218 DVQCGLGVLFNLSGEYDKAVDCFTAALS----VRPND-----------YLLWNKLGATLANGNQSEEAVAAYRRALELQP  282 (368)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCcCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            4455667777777777777777777777    34443           34677777777777777777777777777777


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       479 ~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      .++.+++++|.++..+|++++|+..|+++++++|++
T Consensus       283 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  318 (368)
T 1fch_A          283 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS  318 (368)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred             CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            777777777777777777777777777777777664

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.98  E-value=4.8e-09  Score=90.98  Aligned_cols=101  Identities=27%  Similarity=0.492  Sum_probs=91.0

Q ss_pred             HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006908          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (626)
Q Consensus       399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp  478 (626)
                      ..+...|..++..|++++|+..|.+++.    ..|.+           ..++.++|.++..++++.+|+..+.+++...|
T Consensus        36 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  100 (136)
T 2fo7_A           36 EAWYNLGNAYYKQGDYDEAIEYYQKALE----LDPRS-----------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP  100 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHHhcCHHHHHHHHHHHHH----HCCCc-----------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence            3455678888999999999999999998    34444           34788999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       479 ~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      .+..+++.+|.++..+|++++|+..|++++.++|++
T Consensus       101 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A          101 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             CChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            999999999999999999999999999999999863

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.97  E-value=1e-08  Score=109.58  Aligned_cols=104  Identities=20%  Similarity=0.388  Sum_probs=97.3

Q ss_pred             HHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006908          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (626)
Q Consensus       396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~  475 (626)
                      ..+..+...|..+++.|+|.+|+..|++++.    ..|.+           ..+++++|.|++.+|++.+|+..+.++++
T Consensus        24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~----~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~   88 (450)
T 2y4t_A           24 ADVEKHLELGKKLLAAGQLADALSQFHAAVD----GDPDN-----------YIAYYRRATVFLAMGKSKAALPDLTKVIQ   88 (450)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCcc-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            4577888999999999999999999999998    45554           56899999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       476 ~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      ++|.++.+++.+|.+|..+|++++|+..|+++++++|++
T Consensus        89 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  127 (450)
T 2y4t_A           89 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE  127 (450)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCH
T ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence            999999999999999999999999999999999999986

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.96  E-value=8.5e-09  Score=83.85  Aligned_cols=79  Identities=24%  Similarity=0.446  Sum_probs=72.8

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (626)
Q Consensus       447 ~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~  526 (626)
                      ..+++++|.+++.+++|.+|+..+.+++.++|.+..+++++|.++..+|++++|+..|+++++++|++ ..+...+..+.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~   87 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-HHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999997 56766666554

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.96  E-value=1.1e-08  Score=97.60  Aligned_cols=97  Identities=16%  Similarity=0.160  Sum_probs=49.1

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +..+...|..++..|++++|+..|++++.    ..|.+           ..++.++|.++..+|++.+|+..+.+++.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~   72 (225)
T 2vq2_A            8 SNIKTQLAMEYMRGQDYRQATASIEDALK----SDPKN-----------ELAWLVRAEIYQYLKVNDKAQESFRQALSIK   72 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHH----hCccc-----------hHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence            44455566666666666666666666665    23332           1234444444444444444444444444444


Q ss_pred             CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHh
Q 006908          478 PAHVKGLYRRGMAYMAL-GEFEEAQRDFEMMMK  509 (626)
Q Consensus       478 p~~~ka~~~~g~a~~~l-g~~~eA~~~~~kAl~  509 (626)
                      |.+..+++.+|.++..+ |++++|+..|+++++
T Consensus        73 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~  105 (225)
T 2vq2_A           73 PDSAEINNNYGWFLCGRLNRPAESMAYFDKALA  105 (225)
T ss_dssp             TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred             CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence            44444444444444444 444444444444444

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.95  E-value=4.7e-09  Score=106.65  Aligned_cols=120  Identities=17%  Similarity=0.217  Sum_probs=94.1

Q ss_pred             HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006908          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (626)
Q Consensus       399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp  478 (626)
                      ..+...|..++..|+|++|+..|++++...........      ......++.++|.++.++|++++|+..+.+++.++|
T Consensus       194 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  267 (330)
T 3hym_B          194 FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT------VDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP  267 (330)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCT------TTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccc------ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc
Confidence            34556666677777777777777777764432211100      012246899999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006908          479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (626)
Q Consensus       479 ~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l  525 (626)
                      +++.+++++|.++..+|++++|+..|+++++++|++ ..+...+..+
T Consensus       268 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~  313 (330)
T 3hym_B          268 QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDD-TFSVTMLGHC  313 (330)
T ss_dssp             TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCC-HHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCc-hHHHHHHHHH
Confidence            999999999999999999999999999999999997 5666666554

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.95  E-value=2e-09  Score=96.60  Aligned_cols=88  Identities=10%  Similarity=0.089  Sum_probs=78.2

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (626)
Q Consensus       447 ~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~  526 (626)
                      ...++++|.++++.|+|.+|+..+.+++.++|.++.+|+.+|.++..+|+|++|+..|++|+.++|++ ..+...+..+.
T Consensus        18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~   96 (142)
T 2xcb_A           18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE-PRFPFHAAECH   96 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-THHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-cHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999998 56777777776


Q ss_pred             HHHHHHHHH
Q 006908          527 KQRQEVESK  535 (626)
Q Consensus       527 ~~~~~~~~~  535 (626)
                      ....+..+.
T Consensus        97 ~~~g~~~~A  105 (142)
T 2xcb_A           97 LQLGDLDGA  105 (142)
T ss_dssp             HHTTCHHHH
T ss_pred             HHcCCHHHH
Confidence            555544433

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.94  E-value=4.4e-09  Score=106.59  Aligned_cols=118  Identities=14%  Similarity=0.153  Sum_probs=94.8

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHH----------
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI----------  467 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~----------  467 (626)
                      ...+...|..++..|++++|+..|++++.    ..|.+.           .+++++|.+++.+|++++|+          
T Consensus       117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~----~~P~~~-----------~a~~~la~~~~~~g~~~~A~~~l~~~~~~~  181 (287)
T 3qou_A          117 EELXAQQAMQLMQESNYTDALPLLXDAWQ----LSNQNG-----------EIGLLLAETLIALNRSEDAEAVLXTIPLQD  181 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HTTSCH-----------HHHHHHHHHHHHTTCHHHHHHHHTTSCGGG
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHH----hCCcch-----------hHHHHHHHHHHHCCCHHHHHHHHHhCchhh
Confidence            45677899999999999999999999999    677763           36677777777777766654          


Q ss_pred             ------------------------HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHH
Q 006908          468 ------------------------EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE-PDATAAL  522 (626)
Q Consensus       468 ------------------------~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~-~~~~~~l  522 (626)
                                              ..+.+++.++|+++.+++++|.++...|++++|+..|+++++++|++. ..++..|
T Consensus       182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l  261 (287)
T 3qou_A          182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF  261 (287)
T ss_dssp             CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred             cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence                                    555666788999999999999999999999999999999999999862 3566666


Q ss_pred             HHHHHHHH
Q 006908          523 SKLKKQRQ  530 (626)
Q Consensus       523 ~~l~~~~~  530 (626)
                      ..+...+.
T Consensus       262 ~~~~~~~g  269 (287)
T 3qou_A          262 QEILAALG  269 (287)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHcC
Confidence            66655543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=98.94  E-value=6.8e-09  Score=108.99  Aligned_cols=128  Identities=16%  Similarity=0.245  Sum_probs=84.5

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHH-----------------H------HHhhhhhHHHHHHH
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG-----------------K------VFVGKRNLLHLNVA  454 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~-----------------~------~~~~~~~~~~~Nla  454 (626)
                      +..+...|..+.+.|++++|+..|++++.    +.|.+.+-.                 .      ...+....++.++|
T Consensus       169 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  244 (388)
T 1w3b_A          169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVT----LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA  244 (388)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHH
Confidence            45566677777777777777777777776    344332100                 0      01111245677777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006908          455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (626)
Q Consensus       455 ~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~  530 (626)
                      .++.++|++++|+..+.++++++|.++.+++++|.++..+|++++|+..|+++++++|++ ..+...+..+.....
T Consensus       245 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g  319 (388)
T 1w3b_A          245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH-ADSLNNLANIKREQG  319 (388)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTT
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc-HHHHHHHHHHHHHcC
Confidence            777777777777777777777777777777777777777777777777777777777776 455555655544433

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.94  E-value=9.4e-09  Score=100.64  Aligned_cols=110  Identities=14%  Similarity=0.207  Sum_probs=58.1

Q ss_pred             HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC
Q 006908          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD--AN  477 (626)
Q Consensus       400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~--~d  477 (626)
                      .+...|..++..|++++|+..|.+++.    ..|.+           ..++.++|.++..+|++.+|+..+.+++.  .+
T Consensus        73 ~~~~la~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  137 (252)
T 2ho1_A           73 AHAALAVVFQTEMEPKLADEEYRKALA----SDSRN-----------ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLY  137 (252)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH----HCcCc-----------HHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccC
Confidence            444556666666666666666666665    23322           23445555555555555555555555555  44


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006908          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (626)
Q Consensus       478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l  525 (626)
                      |.++.+++.+|.++..+|++++|+..|+++++++|.+ ..+...+..+
T Consensus       138 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~la~~  184 (252)
T 2ho1_A          138 PERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ-PSVALEMADL  184 (252)
T ss_dssp             TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-HHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc-HHHHHHHHHH
Confidence            5555555555555555555555555555555555544 3333344333

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=98.94  E-value=9.8e-09  Score=107.77  Aligned_cols=128  Identities=20%  Similarity=0.158  Sum_probs=91.0

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHH-----------------------HHHhhhhhHHHHHHH
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG-----------------------KVFVGKRNLLHLNVA  454 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~-----------------------~~~~~~~~~~~~Nla  454 (626)
                      +..+...|..+...|++++|+..|.+++.    ..|.+..-.                       ....+....+++++|
T Consensus       135 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg  210 (388)
T 1w3b_A          135 YCVRSDLGNLLKALGRLEEAKACYLKAIE----TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLG  210 (388)
T ss_dssp             THHHHHHHHHHHTTSCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            44566789999999999999999999998    455442110                       001122345677777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006908          455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (626)
Q Consensus       455 ~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~  530 (626)
                      .++..+++|++|+..+.+++.++|+++.+++++|.++..+|++++|+..|+++++++|++ ..+...+..+.....
T Consensus       211 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g  285 (388)
T 1w3b_A          211 NVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF-PDAYCNLANALKEKG  285 (388)
T ss_dssp             HHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC-HHHHHHHHHHHHHHS
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcC
Confidence            777777777777777777777777777788888888888888888888888888888776 456666655544443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.94  E-value=1.1e-08  Score=97.59  Aligned_cols=67  Identities=18%  Similarity=0.203  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CC
Q 006908          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK-SS  514 (626)
Q Consensus       448 ~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P-~~  514 (626)
                      .++.++|.++.++|++++|+..+.+++..+|.+..+++.+|.++..+|++++|+..|+++++++| .+
T Consensus       114 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  181 (225)
T 2vq2_A          114 IANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQ  181 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence            35556666666666666666666666666666666666666666666666666666666666665 44

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.94  E-value=1.1e-08  Score=101.17  Aligned_cols=119  Identities=17%  Similarity=0.139  Sum_probs=99.9

Q ss_pred             hhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 006908          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK  482 (626)
Q Consensus       403 ~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~k  482 (626)
                      ..+..+...++|++|+..|++++..    .+.++       .....+++++|.++..+|+|.+|+..+.+++.++|.++.
T Consensus        10 ~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~   78 (275)
T 1xnf_A           10 VLAVPLQPTLQQEVILARMEQILAS----RALTD-------DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE   78 (275)
T ss_dssp             GSCCCCCCCHHHHHHHHHHHHHHTS----SCCCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH
T ss_pred             ceeeccCccchHHHHHHHHHHHHhc----ccccC-------chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHH
Confidence            3555667789999999999999983    22221       123568999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 006908          483 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVE  533 (626)
Q Consensus       483 a~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~  533 (626)
                      +++.+|.++..+|++++|+..|+++++++|.+ ..+...+..+........
T Consensus        79 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~  128 (275)
T 1xnf_A           79 VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-NYAHLNRGIALYYGGRDK  128 (275)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-THHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCccc-cHHHHHHHHHHHHhccHH
Confidence            99999999999999999999999999999987 567777777665544433

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.93  E-value=6.5e-09  Score=102.96  Aligned_cols=115  Identities=16%  Similarity=0.202  Sum_probs=98.8

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +..+...|..++..|+|++|+..|.+++.    ..|.+           ..++.++|.+|..+|+|++|+..+.++++++
T Consensus        74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  138 (272)
T 3u4t_A           74 SADFEYYGKILMKKGQDSLAIQQYQAAVD----RDTTR-----------LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT  138 (272)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------THHHHHHHHHHHHTTCHHHHHHHHGGGCCSS
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHh----cCccc-----------HHHHHHHHHHHHHccCHHHHHHHHHHHhhcC
Confidence            44567899999999999999999999999    55554           4589999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006908          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (626)
Q Consensus       478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~  528 (626)
                      |.++.+++++|..+...+++++|+..|+++++++|++ ..+...+..+...
T Consensus       139 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~~~~~~~~  188 (272)
T 3u4t_A          139 TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI-YIGYLWRARANAA  188 (272)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-hHHHHHHHHHHHH
Confidence            9999999999955555669999999999999999997 4555555555443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.93  E-value=7.5e-09  Score=101.34  Aligned_cols=119  Identities=18%  Similarity=0.166  Sum_probs=103.9

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~  476 (626)
                      .+..+...|..++..|+|++|+..|++++.    ..|.+           ..++.++|.++..++++.+|+..+.+++.+
T Consensus        36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  100 (252)
T 2ho1_A           36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALE----IDPSS-----------ADAHAALAVVFQTEMEPKLADEEYRKALAS  100 (252)
T ss_dssp             HHHHHHHHHHHHHHTTCTGGGHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHh----cCCCh-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            478889999999999999999999999998    45544           458899999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHH
Q 006908          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK--VDKSSEPDATAALSKLKKQRQE  531 (626)
Q Consensus       477 dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~--l~P~~~~~~~~~l~~l~~~~~~  531 (626)
                      +|.+..+++.+|.++..+|++++|+..|++++.  .+|.+ ..+...+..+.....+
T Consensus       101 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~  156 (252)
T 2ho1_A          101 DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPER-SRVFENLGLVSLQMKK  156 (252)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTH-HHHHHHHHHHHHHTTC
T ss_pred             CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCccc-HHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999999999  77764 5566666665544433

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.93  E-value=1.6e-08  Score=102.75  Aligned_cols=69  Identities=16%  Similarity=0.175  Sum_probs=48.4

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 006908          460 LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (626)
Q Consensus       460 l~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~  529 (626)
                      .+++.+|+..+.+++..+|.++.+|+.+|.++..+|++++|+..|++|++++|++ +++..++..+....
T Consensus       179 ~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~-~~~l~~l~~~~~~~  247 (291)
T 3mkr_A          179 GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH-PETLINLVVLSQHL  247 (291)
T ss_dssp             TTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHc
Confidence            3677777777777777777777777777777777777777777777777777776 55555555544333

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.92  E-value=8.5e-09  Score=104.58  Aligned_cols=121  Identities=17%  Similarity=0.260  Sum_probs=100.1

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +..+...|..++..|++++|+..|++++.    ..|.+           ..++.++|.++..+|++.+|+..+.++++++
T Consensus       172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  236 (327)
T 3cv0_A          172 AQLHASLGVLYNLSNNYDSAAANLRRAVE----LRPDD-----------AQLWNKLGATLANGNRPQEALDAYNRALDIN  236 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            34566788888999999999999999998    45544           3578899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----------HHHHHHHHHHHHHHHHHHH
Q 006908          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS-----------EPDATAALSKLKKQRQEVE  533 (626)
Q Consensus       478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~-----------~~~~~~~l~~l~~~~~~~~  533 (626)
                      |.+..+++.+|.++..+|++++|+..|++++.++|.+           ...+...+..+.....+..
T Consensus       237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  303 (327)
T 3cv0_A          237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPD  303 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHH
T ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHH
Confidence            9999999999999999999999999999999999882           2556666666655544433

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.92  E-value=1.1e-08  Score=86.38  Aligned_cols=68  Identities=19%  Similarity=0.340  Sum_probs=65.8

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       447 ~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      +..++++|.+++++|+|.+|+..+.+++.++|.++.+++++|.++..+|++++|+..|+++++++|++
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            45789999999999999999999999999999999999999999999999999999999999999986

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.91  E-value=6.4e-09  Score=94.88  Aligned_cols=89  Identities=13%  Similarity=0.102  Sum_probs=76.3

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Q 006908          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA-------HVK-----GLYRRGMAYMALGEFEEAQRDFEMMMKV----  510 (626)
Q Consensus       447 ~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~-------~~k-----a~~~~g~a~~~lg~~~eA~~~~~kAl~l----  510 (626)
                      +..+.|+|.+++++|+|++|+..|++||+++|+       +..     +|+++|.|+..+|+|++|+.+|++||++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            557899999999999999999999999999999       554     9999999999999999999999999999    


Q ss_pred             ---CCCCHHHHH----HHHHHHHHHHHHHHHHH
Q 006908          511 ---DKSSEPDAT----AALSKLKKQRQEVESKA  536 (626)
Q Consensus       511 ---~P~~~~~~~----~~l~~l~~~~~~~~~~~  536 (626)
                         +|++ ..++    ..+..+...+.+..+..
T Consensus        91 ~e~~pd~-~~A~~~~~~~rG~aL~~lgr~eEAl  122 (159)
T 2hr2_A           91 GELNQDE-GKLWISAVYSRALALDGLGRGAEAM  122 (159)
T ss_dssp             CCTTSTH-HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ccCCCch-HHHHHHHHHhHHHHHHHCCCHHHHH
Confidence               9986 5677    66666655555544443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.91  E-value=5.2e-09  Score=106.17  Aligned_cols=110  Identities=12%  Similarity=0.095  Sum_probs=94.2

Q ss_pred             HHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Q 006908          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL-GECRKSIEACNKVL  474 (626)
Q Consensus       396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl-~~~~~A~~~~~~aL  474 (626)
                      ..+..+.+.|+.+.+.|+|++|+.+|++|+.+.....  +       ....+.++.|+|.+|..+ |+|++|+.+|.+||
T Consensus        75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--~-------~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al  145 (292)
T 1qqe_A           75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG--Q-------FRRGANFKFELGEILENDLHDYAKAIDCYELAG  145 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--C-------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC--C-------HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            3577888999999999999999999999999644321  1       112356899999999995 99999999999999


Q ss_pred             HhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          475 DANPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       475 ~~dp~~------~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      ++.|.+      ..++.++|.++..+|+|++|+..|++++++.|++
T Consensus       146 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  191 (292)
T 1qqe_A          146 EWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN  191 (292)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence            998754      5789999999999999999999999999999876

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.90  E-value=4.3e-09  Score=88.50  Aligned_cols=67  Identities=16%  Similarity=0.307  Sum_probs=64.2

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (626)
Q Consensus       447 ~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~  513 (626)
                      ..+++++|.+++++|+|++|+..+.++++++|+++.+|+++|.+|..+|++++|+..|++|+++.|.
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            4589999999999999999999999999999999999999999999999999999999999999764

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.90  E-value=2.5e-08  Score=103.32  Aligned_cols=133  Identities=11%  Similarity=0.031  Sum_probs=104.4

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHH-------------------------------------
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGK-------------------------------------  440 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~-------------------------------------  440 (626)
                      +..+...|..++..|++++|+..|.+++.    ..|.+.....                                     
T Consensus       132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  207 (368)
T 1fch_A          132 QTALMALAVSFTNESLQRQACEILRDWLR----YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAA  207 (368)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHH
Confidence            34556677778888888888888888877    3333221100                                     


Q ss_pred             -HHhhh--hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Q 006908          441 -VFVGK--RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPD  517 (626)
Q Consensus       441 -~~~~~--~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~  517 (626)
                       ...+.  ...+++++|.++.++|+|.+|+..+.+++.++|.++.+++++|.++..+|++++|+..|+++++++|++ ..
T Consensus       208 ~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~  286 (368)
T 1fch_A          208 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY-IR  286 (368)
T ss_dssp             HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HH
T ss_pred             HHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HH
Confidence             01111  356889999999999999999999999999999999999999999999999999999999999999997 67


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 006908          518 ATAALSKLKKQRQEVESK  535 (626)
Q Consensus       518 ~~~~l~~l~~~~~~~~~~  535 (626)
                      +...+..+.....+..+.
T Consensus       287 ~~~~l~~~~~~~g~~~~A  304 (368)
T 1fch_A          287 SRYNLGISCINLGAHREA  304 (368)
T ss_dssp             HHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHCCCHHHH
Confidence            777888777665554443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.90  E-value=6.6e-09  Score=102.73  Aligned_cols=129  Identities=16%  Similarity=0.166  Sum_probs=104.3

Q ss_pred             HHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006908          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (626)
Q Consensus       396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~  475 (626)
                      ..+..+...|..++..|+|++|+..|.+++.........+       ......++.++|.++..+|+|.+|+..+.+++.
T Consensus        41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  113 (283)
T 3edt_B           41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD-------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE  113 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc-------chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            4577788999999999999999999999998654322111       123467899999999999999999999999999


Q ss_pred             h--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHHHH
Q 006908          476 A--------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV--------DKSSEPDATAALSKLKKQRQEV  532 (626)
Q Consensus       476 ~--------dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l--------~P~~~~~~~~~l~~l~~~~~~~  532 (626)
                      +        +|....+++++|.++..+|++++|+..|++++++        +|.. ..+...+..+.....+.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~  185 (283)
T 3edt_B          114 IREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV-AKTKNNLASCYLKQGKY  185 (283)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHH-HHHHHHHHHHHHHHTCH
T ss_pred             HHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHHHcCCH
Confidence            8        5777899999999999999999999999999998        4442 44556666665544433

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.90  E-value=1.8e-08  Score=102.36  Aligned_cols=121  Identities=13%  Similarity=0.071  Sum_probs=104.3

Q ss_pred             HHHHHhhhchhhccc-cHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908          398 AEKIRVTGNRLFKEG-KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g-~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~  476 (626)
                      +..+...|..++..| ++++|+..|++++.    ..|.+           ..++.++|.++..+|+|.+|+..+.+++.+
T Consensus        90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  154 (330)
T 3hym_B           90 PVSWFAVGCYYLMVGHKNEHARRYLSKATT----LEKTY-----------GPAWIAYGHSFAVESEHDQAMAAYFTAAQL  154 (330)
T ss_dssp             THHHHHHHHHHHHSCSCHHHHHHHHHHHHT----TCTTC-----------THHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHH----hCCcc-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            345667888999999 99999999999998    55654           457899999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 006908          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVES  534 (626)
Q Consensus       477 dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~  534 (626)
                      +|.+..+++.+|.++..+|++++|+..|+++++++|.+ ..+...+..+........+
T Consensus       155 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~l~~~~~~~~~~~~  211 (330)
T 3hym_B          155 MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED-PFVMHEVGVVAFQNGEWKT  211 (330)
T ss_dssp             TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-HHHHHHHHHHHHHTTCHHH
T ss_pred             ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHcccHHH
Confidence            99999999999999999999999999999999999997 5677777776655444433

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.90  E-value=1.3e-08  Score=93.49  Aligned_cols=90  Identities=22%  Similarity=0.206  Sum_probs=80.7

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006908          446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (626)
Q Consensus       446 ~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l  525 (626)
                      .+..++++|.+++++++|.+|+..|.+++.++|.++.+|+++|.+|..+|+|++|+.+|++|++++|++ ..+...+..+
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~   88 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY-SKAWSRLGLA   88 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHH
Confidence            356889999999999999999999999999999999999999999999999999999999999999998 6788888887


Q ss_pred             HHHHHHHHHHH
Q 006908          526 KKQRQEVESKA  536 (626)
Q Consensus       526 ~~~~~~~~~~~  536 (626)
                      ...+.+..+..
T Consensus        89 ~~~~g~~~~A~   99 (164)
T 3sz7_A           89 RFDMADYKGAK   99 (164)
T ss_dssp             HHHTTCHHHHH
T ss_pred             HHHccCHHHHH
Confidence            76665554443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.89  E-value=4.4e-09  Score=97.96  Aligned_cols=114  Identities=17%  Similarity=0.202  Sum_probs=78.8

Q ss_pred             HHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHH---------------
Q 006908          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRK---------------  465 (626)
Q Consensus       401 ~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~---------------  465 (626)
                      +...|..++..|+|++|+..|++++.    ..|.+           ..+++++|.++..+|++++               
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~----~~P~~-----------~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~   73 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSD----ELQSR-----------GDVKLAKADCLLETKQFELAQELLATIPLEYQDN   73 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCH----HHHTS-----------HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCc-----------HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCCh
Confidence            34566666777777777777777766    33433           2244444444444444444               


Q ss_pred             -------------------HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHH
Q 006908          466 -------------------SIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE-PDATAALSKL  525 (626)
Q Consensus       466 -------------------A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~-~~~~~~l~~l  525 (626)
                                         |+..+.++++++|+++.+++.+|.++..+|++++|+..|+++++++|++. ..++..+..+
T Consensus        74 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~  153 (176)
T 2r5s_A           74 SYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDI  153 (176)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHH
Confidence                               45566667778899999999999999999999999999999999998742 3466666665


Q ss_pred             HHHH
Q 006908          526 KKQR  529 (626)
Q Consensus       526 ~~~~  529 (626)
                      ....
T Consensus       154 ~~~~  157 (176)
T 2r5s_A          154 LSAL  157 (176)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            5444

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.89  E-value=1.4e-09  Score=90.65  Aligned_cols=64  Identities=22%  Similarity=0.473  Sum_probs=49.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          451 LNVAACLLKLGECRKSIEACNKVLDANPAHVK-GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       451 ~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~k-a~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      +++|.++++.++|.+|+..|.++++++|.++. +++++|.++..+|++++|+..|+++++++|++
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   68 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS   68 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence            45777777777777777777777777777777 77777777777777777777777777777776

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.88  E-value=8.4e-09  Score=111.16  Aligned_cols=122  Identities=16%  Similarity=0.064  Sum_probs=98.1

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +..+...|..++..|+|++|+.+|++|+.++....+..      .....+.+|.|+|.+|..+|+|.+|+.++.+++++.
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~------~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~  124 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQ------AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC  124 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGG------CTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccc------cchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence            55677899999999999999999999998654322211      112235689999999999999999999999999873


Q ss_pred             --------CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908          478 --------PAHVKGLYRRGMAYMALG--EFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (626)
Q Consensus       478 --------p~~~ka~~~~g~a~~~lg--~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~  526 (626)
                              +..+.++.++|.++..++  +|++|+.+|++|++++|++ +.+...+..+.
T Consensus       125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~-~~~~~~~~~~~  182 (472)
T 4g1t_A          125 EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN-PEFTSGLAIAS  182 (472)
T ss_dssp             HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC-HHHHHHHHHHH
T ss_pred             HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence                    456889999999888765  6999999999999999998 66666665543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.88  E-value=7.1e-09  Score=105.05  Aligned_cols=107  Identities=15%  Similarity=0.144  Sum_probs=92.2

Q ss_pred             HHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006908          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (626)
Q Consensus       396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~  475 (626)
                      ..+..+...|..++..|+|++|+.+|++|+..+..... +       ....+.+++|+|.+|.++|+|.+|+.++.++++
T Consensus       153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-~-------~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~  224 (293)
T 3u3w_A          153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-N-------EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE  224 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC-C-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-c-------hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            35667889999999999999999999999986654422 2       234567999999999999999999999999999


Q ss_pred             hCCCC------HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhc
Q 006908          476 ANPAH------VKGLYRRGMAYMALG-EFEEAQRDFEMMMKV  510 (626)
Q Consensus       476 ~dp~~------~ka~~~~g~a~~~lg-~~~eA~~~~~kAl~l  510 (626)
                      +.+..      +.+|+++|.++..+| .+++|+.+|++|+.+
T Consensus       225 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          225 ISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            87543      889999999999999 579999999999987

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.86  E-value=8.7e-09  Score=104.50  Aligned_cols=109  Identities=15%  Similarity=0.097  Sum_probs=89.4

Q ss_pred             HHHHHHhhhchhhcc-ccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006908          397 EAEKIRVTGNRLFKE-GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~-g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~  475 (626)
                      .+..+...|..+... |+|++|+.+|++|+.+.+...  +       ......++.|+|.++.++|+|.+|+.+|.+++.
T Consensus       116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~--~-------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  186 (292)
T 1qqe_A          116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ--S-------VALSNKCFIKCADLKALDGQYIEASDIYSKLIK  186 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--C-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC--C-------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            356778899999996 999999999999999543211  0       112246899999999999999999999999999


Q ss_pred             hCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          476 ANPAHVK-------GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       476 ~dp~~~k-------a~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      +.|.+..       +|+++|.++..+|++++|+.+|+++++++|++
T Consensus       187 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  232 (292)
T 1qqe_A          187 SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF  232 (292)
T ss_dssp             TTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred             HHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            9987642       78999999999999999999999999999986

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.86  E-value=2.2e-08  Score=97.21  Aligned_cols=126  Identities=15%  Similarity=0.178  Sum_probs=99.4

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHH------------------
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK------------------  459 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~k------------------  459 (626)
                      ...+...|..+++.|+|++|+..|++++.    ..|.+..        ...+++++|.|+.+                  
T Consensus        41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~----~~P~~~~--------~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~  108 (225)
T 2yhc_A           41 QQVQLDLIYAYYKNADLPLAQAAIDRFIR----LNPTHPN--------IDYVMYMRGLTNMALDDSALQGFFGVDRSDRD  108 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCTT--------HHHHHHHHHHHHHHHHC--------------C
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----HCcCCCc--------HHHHHHHHHHHHHhhhhhhhhhhhccchhhcC
Confidence            34677889999999999999999999999    5665531        12367778888876                  


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHHH
Q 006908          460 LGECRKSIEACNKVLDANPAHVKGL-----------------YRRGMAYMALGEFEEAQRDFEMMMKVDKSSE--PDATA  520 (626)
Q Consensus       460 l~~~~~A~~~~~~aL~~dp~~~ka~-----------------~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~--~~~~~  520 (626)
                      ++++.+|+..+.++++.+|++..++                 +.+|.++...|+|++|+..|+++++..|++.  ..+..
T Consensus       109 ~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~  188 (225)
T 2yhc_A          109 PQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALP  188 (225)
T ss_dssp             CHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHH
Confidence            5789999999999999999987554                 6789999999999999999999999999973  23455


Q ss_pred             HHHHHHHHHHHHHHH
Q 006908          521 ALSKLKKQRQEVESK  535 (626)
Q Consensus       521 ~l~~l~~~~~~~~~~  535 (626)
                      .+..+...+....+.
T Consensus       189 ~l~~~~~~~g~~~~A  203 (225)
T 2yhc_A          189 LMENAYRQMQMNAQA  203 (225)
T ss_dssp             HHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHcCCcHHH
Confidence            555555554444433

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.85  E-value=2e-08  Score=81.65  Aligned_cols=84  Identities=26%  Similarity=0.412  Sum_probs=75.8

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~  476 (626)
                      .+..+...|..++..|+|++|+..|++++.    ..|.+           ..++.++|.|+.+++++++|+..+.+++++
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALE----LDPNN-----------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            456778899999999999999999999999    45554           458899999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcC
Q 006908          477 NPAHVKGLYRRGMAYMALG  495 (626)
Q Consensus       477 dp~~~ka~~~~g~a~~~lg  495 (626)
                      +|.+..+++++|.++..+|
T Consensus        73 ~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           73 DPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             CTTCHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHhcC
Confidence            9999999999999998765

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.84  E-value=2.2e-08  Score=107.28  Aligned_cols=123  Identities=10%  Similarity=0.041  Sum_probs=97.4

Q ss_pred             hhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHH
Q 006908          392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN  471 (626)
Q Consensus       392 ~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~  471 (626)
                      .+.+..+....+.+...-+.|+|++|+..|+++|.........+       +...+..+.|+|.+|..+|+|++|+..+.
T Consensus       292 ~~~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~-------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~  364 (433)
T 3qww_A          292 RDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDS-------NVYMLHMMYQAMGVCLYMQDWEGALKYGQ  364 (433)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTT-------SHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChh-------chHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence            34444555556666666677899999999999999766544333       34467889999999999999999999999


Q ss_pred             HHHHhC-----C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHH
Q 006908          472 KVLDAN-----P---AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV-----DKSSEPDATAAL  522 (626)
Q Consensus       472 ~aL~~d-----p---~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l-----~P~~~~~~~~~l  522 (626)
                      ++|++.     |   +-+.+|+++|.+|..+|+|++|+..|++|+++     .|++ +.+....
T Consensus       365 ~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~H-p~~~~l~  427 (433)
T 3qww_A          365 KIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDH-PYISEIK  427 (433)
T ss_dssp             HHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC-HHHHHHH
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC-hHHHHHH
Confidence            999763     3   44678999999999999999999999999987     5766 4444433

>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A

Probab=98.82  E-value=2.9e-09  Score=112.23  Aligned_cols=87  Identities=18%  Similarity=0.119  Sum_probs=74.7

Q ss_pred             CCCCCCCeEEEEEEEEeCCCcEEEecCCCccEEEEcCCCCccchHHHhhccCCCCcEEEEEEeCCccCCCCCCCCCCCcc
Q 006908          167 ETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCE  246 (626)
Q Consensus       167 ~~~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~ip~~~  246 (626)
                      ..+..||.|++||+++ .+|+.|+++ .+.|+.|.+|.|+++|||+++|.||++|++++|.|+....|+...    .++.
T Consensus       159 ~~~~~gD~V~i~y~g~-~dG~~fd~~-~~~~~~~~lG~g~~ipgfee~L~Gmk~Ge~~~v~v~fp~dy~~~~----laGk  232 (392)
T 1t11_A          159 EAAENGKRVSIDFVGS-IDGVEFEGG-KAENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAEN----LKGK  232 (392)
T ss_dssp             CCCCTTCEEEEEEEEE-SSSSCCTTC-EEEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTT----TSSC
T ss_pred             CCCCCCCEEEEEEEEE-ECCEEccCC-CccceEEEecCCCcchhHHHHhCCCCCCCEEEEEEeCccccccCC----CCCC
Confidence            4588999999999997 699999976 468999999999999999999999999999999998444566432    2678


Q ss_pred             eEEEEEEEeeEEe
Q 006908          247 EVHFEVELVHLIQ  259 (626)
Q Consensus       247 ~l~~~v~l~~~~~  259 (626)
                      +++|+|+|+++..
T Consensus       233 ~~~F~V~v~~i~~  245 (392)
T 1t11_A          233 AAKFAIKVNKVEA  245 (392)
T ss_dssp             EEEECCCEEEEEE
T ss_pred             eEEEEEEEEEEEc
Confidence            9999999999853

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.81  E-value=3.6e-08  Score=88.32  Aligned_cols=108  Identities=19%  Similarity=0.202  Sum_probs=92.5

Q ss_pred             HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (626)
Q Consensus       395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL  474 (626)
                      ...+..+...|..++..|+|++|+..|.+++.......  +       ......++.++|.++..+|+|.+|+..+.+++
T Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~   76 (164)
T 3ro3_A            6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--D-------KAAERIAYSNLGNAYIFLGEFETASEYYKKTL   76 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--C-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC--C-------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            45678889999999999999999999999998654321  1       12335689999999999999999999999999


Q ss_pred             HhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006908          475 DANPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (626)
Q Consensus       475 ~~dp~~------~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~  511 (626)
                      .+.+..      ..+++++|.++..+|++++|+..|++++++.
T Consensus        77 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  119 (164)
T 3ro3_A           77 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA  119 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            886543      6789999999999999999999999999874

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.81  E-value=3e-08  Score=82.44  Aligned_cols=61  Identities=13%  Similarity=0.087  Sum_probs=55.0

Q ss_pred             hhH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          446 RNL-LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       446 ~~~-~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      ... +++++|.|++++++|.+|+.++.++++++|++..++++        +.+.+|+..|++++.++|++
T Consensus        33 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           33 GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHHHHHCCTTHHHHCC
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHHHHHHHHhccCccc
Confidence            456 89999999999999999999999999999999999866        67888999999999888875

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.80  E-value=3.7e-08  Score=88.69  Aligned_cols=103  Identities=14%  Similarity=0.180  Sum_probs=85.4

Q ss_pred             cccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHH
Q 006908          411 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG---ECRKSIEACNKVLDAN-P-AHVKGLY  485 (626)
Q Consensus       411 ~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~---~~~~A~~~~~~aL~~d-p-~~~ka~~  485 (626)
                      ......+.+.|.+++.    ..+.+           ..+.+|+|.|+.+.+   ++.+++..++.+++.+ | .+..++|
T Consensus        11 ~~~l~~~~~~y~~e~~----~~~~~-----------~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY   75 (152)
T 1pc2_A           11 VEDLLKFEKKFQSEKA----AGSVS-----------KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVF   75 (152)
T ss_dssp             HHHHHHHHHHHHHHHH----TTCCC-----------HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc----cCCCc-----------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHH
Confidence            3455677788888876    33433           458899999999998   7789999999999999 7 6799999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 006908          486 RRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (626)
Q Consensus       486 ~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~  529 (626)
                      ++|.+|+++++|++|+++++++|+++|+| ..+......++.+.
T Consensus        76 ~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n-~QA~~Lk~~ie~~~  118 (152)
T 1pc2_A           76 YLAVGNYRLKEYEKALKYVRGLLQTEPQN-NQAKELERLIDKAM  118 (152)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHH
Confidence            99999999999999999999999999998 56766666665444

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.80  E-value=1.9e-08  Score=99.42  Aligned_cols=109  Identities=15%  Similarity=0.124  Sum_probs=93.8

Q ss_pred             HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (626)
Q Consensus       395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL  474 (626)
                      ...+..+...|..++..|+|++|+..|.+++.........+       ......++.|+|.++..+|+|++|+..+.+++
T Consensus        82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  154 (283)
T 3edt_B           82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF-------HPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL  154 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC-------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34567788899999999999999999999998654321111       12346789999999999999999999999999


Q ss_pred             Hh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908          475 DA--------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (626)
Q Consensus       475 ~~--------dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l  510 (626)
                      .+        .|..+.+++.+|.++..+|++++|+..|++++++
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          155 EIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            99        7778899999999999999999999999999987

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.80  E-value=5.3e-08  Score=85.69  Aligned_cols=87  Identities=14%  Similarity=0.142  Sum_probs=78.4

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (626)
Q Consensus       447 ~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~  526 (626)
                      ...++++|.+++++++|.+|+..+.+++.++|.++.+++++|.++..+|++++|+..|+++++++|++ ..+...+..+.
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~   87 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-VKAHFFLGQCQ   87 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh-HHHHHHHHHHH
Confidence            56899999999999999999999999999999999999999999999999999999999999999997 67777777776


Q ss_pred             HHHHHHHH
Q 006908          527 KQRQEVES  534 (626)
Q Consensus       527 ~~~~~~~~  534 (626)
                      .......+
T Consensus        88 ~~~~~~~~   95 (137)
T 3q49_B           88 LEMESYDE   95 (137)
T ss_dssp             HHTTCHHH
T ss_pred             HHHhhHHH
Confidence            55554443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.78  E-value=4.5e-08  Score=104.97  Aligned_cols=123  Identities=11%  Similarity=0.086  Sum_probs=97.6

Q ss_pred             HHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006908          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (626)
Q Consensus       396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~  475 (626)
                      ..+..+...-..+.++|+|++|+..|+++|.....+.+.+       +...+..+.|+|.+|..+|+|++|+..|.++|.
T Consensus       285 ~~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~-------h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~  357 (429)
T 3qwp_A          285 KEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDI-------NIYQLKVLDCAMDACINLGLLEEALFYGTRTME  357 (429)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTT-------SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCcc-------chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            3445555666677788999999999999998765544433       345678999999999999999999999999997


Q ss_pred             hC-----CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHH
Q 006908          476 AN-----PA---HVKGLYRRGMAYMALGEFEEAQRDFEMMMKV-----DKSSEPDATAALSKLK  526 (626)
Q Consensus       476 ~d-----p~---~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l-----~P~~~~~~~~~l~~l~  526 (626)
                      +.     |+   -+..++++|.+|..+|+|++|+..|++|+++     .|++ +.+...+..+.
T Consensus       358 i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~H-p~~~~~~~~l~  420 (429)
T 3qwp_A          358 PYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREH-SLIEDLILLLE  420 (429)
T ss_dssp             HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS-HHHHHHHHHHH
T ss_pred             hHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC-hHHHHHHHHHH
Confidence            63     33   4678999999999999999999999999987     5666 55554444443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.78  E-value=3.1e-08  Score=110.23  Aligned_cols=102  Identities=10%  Similarity=0.047  Sum_probs=95.1

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +..+...|..++..|+|++|+..|++++.    +.|.+           ..+++|+|.||.++|++++|+..+.++++++
T Consensus        57 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  121 (568)
T 2vsy_A           57 PEAVARLGRVRWTQQRHAEAAVLLQQASD----AAPEH-----------PGIALWLGHALEDAGQAEAAAAAYTRAHQLL  121 (568)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            45677899999999999999999999999    56665           4589999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCC
Q 006908          478 PAHVKGLYRRGMAYMAL---GEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       478 p~~~ka~~~~g~a~~~l---g~~~eA~~~~~kAl~l~P~~  514 (626)
                      |++..+++++|.++..+   |++++|++.|+++++++|++
T Consensus       122 p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  161 (568)
T 2vsy_A          122 PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA  161 (568)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred             CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence            99999999999999999   99999999999999999986

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.78  E-value=4.7e-08  Score=106.83  Aligned_cols=133  Identities=15%  Similarity=0.158  Sum_probs=96.7

Q ss_pred             HHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCC---------------hhH-HHH------HhhhhhHHHHHH
Q 006908          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQD---------------DEE-GKV------FVGKRNLLHLNV  453 (626)
Q Consensus       396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~---------------~ee-~~~------~~~~~~~~~~Nl  453 (626)
                      ..+..+...|..++..|++++|+..|++++..    .|..               .++ ...      ..+....++.++
T Consensus       241 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  316 (537)
T 3fp2_A          241 NAALALCYTGIFHFLKNNLLDAQVLLQESINL----HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHR  316 (537)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc----CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHH
Confidence            34556666666666677777777777666652    2220               000 000      111234578999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 006908          454 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVE  533 (626)
Q Consensus       454 a~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~  533 (626)
                      |.++..+|+|.+|+..+.+++.++|.+..+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+.....+..
T Consensus       317 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~  395 (537)
T 3fp2_A          317 GQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL-PEVPTFFAEILTDRGDFD  395 (537)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-THHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHhCCHH
Confidence            9999999999999999999999999999999999999999999999999999999999987 567777766655444333

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.78  E-value=1.2e-07  Score=96.05  Aligned_cols=114  Identities=9%  Similarity=0.130  Sum_probs=98.7

Q ss_pred             hc-hhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 006908          405 GN-RLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG  483 (626)
Q Consensus       405 Gn-~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka  483 (626)
                      |. .++..|++++|+..|++++.    ..|.+           ..++.++|.++.++|++++|+..+.+++.++|.+..+
T Consensus       144 ~~~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  208 (327)
T 3cv0_A          144 EDFFFAAPNEYRECRTLLHAALE----MNPND-----------AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQL  208 (327)
T ss_dssp             --CCTTSHHHHHHHHHHHHHHHH----HSTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HhHHHHHcccHHHHHHHHHHHHh----hCCCC-----------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence            44 58899999999999999998    45544           4588999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 006908          484 LYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVES  534 (626)
Q Consensus       484 ~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~  534 (626)
                      ++.+|.++..+|++++|+..|+++++++|++ ..+...+..+.....+..+
T Consensus       209 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~g~~~~  258 (327)
T 3cv0_A          209 WNKLGATLANGNRPQEALDAYNRALDINPGY-VRVMYNMAVSYSNMSQYDL  258 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhccHHH
Confidence            9999999999999999999999999999997 5677777777655544443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.74  E-value=3.4e-08  Score=82.99  Aligned_cols=86  Identities=19%  Similarity=0.171  Sum_probs=76.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHH
Q 006908          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS--SEPDATAALSK  524 (626)
Q Consensus       447 ~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~--~~~~~~~~l~~  524 (626)
                      ..+++++|.+++.+++|.+|+..+.++++++|.+..+++++|.++..+|++++|+..|+++++++|.  + ..+...+..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~l~~   84 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYN-KDVWAAKAD   84 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTC-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccch-HHHHHHHHH
Confidence            3478889999999999999999999999999999999999999999999999999999999999999  7 567777777


Q ss_pred             HHHHH-HHHH
Q 006908          525 LKKQR-QEVE  533 (626)
Q Consensus       525 l~~~~-~~~~  533 (626)
                      +.... ....
T Consensus        85 ~~~~~~~~~~   94 (112)
T 2kck_A           85 ALRYIEGKEV   94 (112)
T ss_dssp             HHTTCSSCSH
T ss_pred             HHHHHhCCHH
Confidence            76555 4433

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.74  E-value=4.6e-08  Score=99.90  Aligned_cols=107  Identities=10%  Similarity=0.033  Sum_probs=89.2

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~  476 (626)
                      .+..+...|..+.. |+|++|+.+|++|+.+.....  +       ......++.|+|.+|.++|+|.+|+.+|.+++.+
T Consensus       115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~--~-------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  184 (307)
T 2ifu_A          115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEE--R-------LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM  184 (307)
T ss_dssp             HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTT--C-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCC--C-------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            46677788888888 999999999999998544321  1       1123568999999999999999999999999998


Q ss_pred             CCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          477 NPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       477 dp~~------~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      .|.+      ..+++.+|.++..+|++++|+..|++++ ++|.+
T Consensus       185 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~  227 (307)
T 2ifu_A          185 YKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF  227 (307)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred             HHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence            7643      4589999999999999999999999999 99975

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.73  E-value=6.2e-08  Score=101.75  Aligned_cols=127  Identities=15%  Similarity=0.144  Sum_probs=98.7

Q ss_pred             HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (626)
Q Consensus       395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL  474 (626)
                      ...+..+...|..++..|+|.+|+.+|.+|+..+......        ....+.+++|+|.||..+|+|++|+.++.+|+
T Consensus       140 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  211 (383)
T 3ulq_A          140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY--------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAY  211 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc--------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            4467788889999999999999999999999976543211        12346789999999999999999999999999


Q ss_pred             HhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----C-CCCHHHHHHHHHHHHHHHH
Q 006908          475 DANPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKV-----D-KSSEPDATAALSKLKKQRQ  530 (626)
Q Consensus       475 ~~dp~~------~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l-----~-P~~~~~~~~~l~~l~~~~~  530 (626)
                      .+.+..      +.+++++|.+|..+|++++|+..|++|+++     + |.. ..+...+..+.....
T Consensus       212 ~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~l~~~~~~~g  278 (383)
T 3ulq_A          212 SMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL-PQAYFLITQIHYKLG  278 (383)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH-HHHHHHHHHHHHHTT
T ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH-HHHHHHHHHHHHHCC
Confidence            885433      368999999999999999999999999994     4 443 455666666554433

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.73  E-value=5.9e-08  Score=88.05  Aligned_cols=98  Identities=14%  Similarity=0.096  Sum_probs=84.8

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +..+...|..++..|+|++|+..|.+++.    +.|.+           ..+++++|.|+..+|++.+|+..+.+++.++
T Consensus        47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~  111 (166)
T 1a17_A           47 AIYYGNRSLAYLRTECYGYALGDATRAIE----LDKKY-----------IKGYYRRAASNMALGKFRAALRDYETVVKVK  111 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCccc-----------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            45567889999999999999999999999    45554           4589999999999999999999999999999


Q ss_pred             CCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHhc
Q 006908          478 PAHVKGLYRR--GMAYMALGEFEEAQRDFEMMMKV  510 (626)
Q Consensus       478 p~~~ka~~~~--g~a~~~lg~~~eA~~~~~kAl~l  510 (626)
                      |.+..++..+  +..+..+|++++|+..+.++..+
T Consensus       112 p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A          112 PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence            9999888554  44488889999999999887654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.73  E-value=4.5e-08  Score=89.57  Aligned_cols=89  Identities=12%  Similarity=0.174  Sum_probs=78.4

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908          447 NLLHLNVAACLLKLGECRKSIEACNKVLDA------------------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM  508 (626)
Q Consensus       447 ~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~------------------dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl  508 (626)
                      +..+.++|.++++.|+|.+|+..|.++|.+                  +|.++.+|+++|.||..+|+|++|+.+|++|+
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            567889999999999999999999999999                  78888999999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 006908          509 KVDKSSEPDATAALSKLKKQRQEVESKA  536 (626)
Q Consensus       509 ~l~P~~~~~~~~~l~~l~~~~~~~~~~~  536 (626)
                      +++|++ ..+...+..+...+....+..
T Consensus        91 ~~~p~~-~~a~~~~g~~~~~~g~~~~A~  117 (162)
T 3rkv_A           91 KREETN-EKALFRRAKARIAAWKLDEAE  117 (162)
T ss_dssp             HHSTTC-HHHHHHHHHHHHHTTCHHHHH
T ss_pred             hcCCcc-hHHHHHHHHHHHHHhcHHHHH
Confidence            999998 567777777766665555443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.72  E-value=3.6e-08  Score=99.81  Aligned_cols=107  Identities=14%  Similarity=0.123  Sum_probs=89.9

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~  476 (626)
                      .+..+...|..++..|+|++|+.+|++|+...... +.+.       .....+++|+|.+|.++|+|++|+.++.+++.+
T Consensus       154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~-~~~~-------~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~  225 (293)
T 2qfc_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL-HDNE-------EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI  225 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-CCCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-Cccc-------cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            46788899999999999999999999999755432 2221       122368999999999999999999999999988


Q ss_pred             CCC------CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhcC
Q 006908          477 NPA------HVKGLYRRGMAYMALGEFEEA-QRDFEMMMKVD  511 (626)
Q Consensus       477 dp~------~~ka~~~~g~a~~~lg~~~eA-~~~~~kAl~l~  511 (626)
                      .+.      .+.+|+++|.++..+|++++| ..+|++|+.+.
T Consensus       226 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            643      278999999999999999999 88899999873

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.72  E-value=7.5e-08  Score=106.90  Aligned_cols=116  Identities=13%  Similarity=0.102  Sum_probs=89.2

Q ss_pred             HHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 006908          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH  480 (626)
Q Consensus       401 ~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~  480 (626)
                      +...|..+++.|++++|+..|++++....... .++       .....+|.++|.++.++|++++|+..+.++++++|.+
T Consensus       478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~p-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~  549 (597)
T 2xpi_A          478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQ-SNE-------KPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND  549 (597)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-CCS-------GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccc-cch-------hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence            44455555556666666666666555322110 000       0014689999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006908          481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (626)
Q Consensus       481 ~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l  525 (626)
                      +.+|+.+|.+|..+|++++|+..|+++++++|++ ..+...|..+
T Consensus       550 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~  593 (597)
T 2xpi_A          550 ANVHTAIALVYLHKKIPGLAITHLHESLAISPNE-IMASDLLKRA  593 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-hHHHHHHHHH
Confidence            9999999999999999999999999999999998 5666666554

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.71  E-value=6.8e-08  Score=101.83  Aligned_cols=125  Identities=17%  Similarity=0.220  Sum_probs=102.9

Q ss_pred             HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (626)
Q Consensus       395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL  474 (626)
                      ...+..+...|..++..|+|++|+..|++++.    +.|.+.       .....+++++|.+|+.+|+|.+|+..+.+++
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~----~~~~~~-------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  113 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQ----AGTEDL-------RTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL  113 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCSCH-------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH----hcccCh-------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            45678888999999999999999999999999    455552       2335689999999999999999999999999


Q ss_pred             Hh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHHHHH
Q 006908          475 DA------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD------KSSEPDATAALSKLKKQRQE  531 (626)
Q Consensus       475 ~~------dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~------P~~~~~~~~~l~~l~~~~~~  531 (626)
                      .+      +|..+.+++++|.++..+|++++|+..|++++.+.      |. ...+...+..+......
T Consensus       114 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~l~~~~~~~g~  181 (411)
T 4a1s_A          114 TLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLS-EGRALYNLGNVYHAKGK  181 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHH-HHHHHHHHHHHHHHcCc
Confidence            98      57788999999999999999999999999999983      22 23355555555544444

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.71  E-value=5.8e-08  Score=101.92  Aligned_cols=108  Identities=14%  Similarity=0.070  Sum_probs=95.4

Q ss_pred             HHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006908          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (626)
Q Consensus       396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~  475 (626)
                      ..+..+...|..++..|+|++|+..|.+|+.......  +       ....+.+++|+|.||..+|+|++|+.++.+++.
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~--~-------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~  250 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ--N-------DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK  250 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--C-------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC--C-------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4677888999999999999999999999999654332  1       123467899999999999999999999999999


Q ss_pred             -----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 006908          476 -----ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK  512 (626)
Q Consensus       476 -----~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P  512 (626)
                           .+|..+.+++++|.++..+|++++|+..|++|+++.+
T Consensus       251 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  292 (378)
T 3q15_A          251 VSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT  292 (378)
T ss_dssp             HHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence                 7788899999999999999999999999999999854

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.71  E-value=2.6e-08  Score=101.74  Aligned_cols=109  Identities=10%  Similarity=0.021  Sum_probs=91.8

Q ss_pred             HHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006908          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (626)
Q Consensus       396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~  475 (626)
                      ..+..+.+.|+.+.+.|+|++|+.+|++|+.+.....  +       ....+.++.|+|.+|.. ++|++|+.++.+|+.
T Consensus        74 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--~-------~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~  143 (307)
T 2ifu_A           74 HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG--T-------PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAA  143 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT--C-------HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC--C-------HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Confidence            3466788889999999999999999999998654321  1       11235689999999999 999999999999999


Q ss_pred             hCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          476 ANPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       476 ~dp~~------~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      +.+..      ..+++++|.+|..+|+|++|+..|++++++.|.+
T Consensus       144 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  188 (307)
T 2ifu_A          144 VFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM  188 (307)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence            87643      6899999999999999999999999999986643

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.70  E-value=5.4e-08  Score=105.46  Aligned_cols=116  Identities=13%  Similarity=0.100  Sum_probs=88.5

Q ss_pred             HHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhC
Q 006908          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK---LGECRKSIEACNKVLDAN  477 (626)
Q Consensus       401 ~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~k---l~~~~~A~~~~~~aL~~d  477 (626)
                      +...|..++..|++++|+..|.+++...+    .+..     ......+++++|.++.+   +|++.+|+..+.+++.++
T Consensus       375 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~----~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~  445 (514)
T 2gw1_A          375 PNFFAEILTDKNDFDKALKQYDLAIELEN----KLDG-----IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD  445 (514)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHH----TSSS-----CSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhhh----ccch-----HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC
Confidence            33455555566666666666666655221    1100     00113389999999999   999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (626)
Q Consensus       478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~  526 (626)
                      |++..+++.+|.++..+|++++|+..|+++++++|++ ..+...+..+.
T Consensus       446 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~  493 (514)
T 2gw1_A          446 PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM-EEKLQAITFAE  493 (514)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH-HHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc-HHHHHHHHHHH
Confidence            9999999999999999999999999999999999986 56666665443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.69  E-value=5.3e-08  Score=98.51  Aligned_cols=124  Identities=14%  Similarity=0.104  Sum_probs=95.9

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA-  476 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~-  476 (626)
                      +..+...|..++..++|++|+..|++|+.......  +       ....+.+++|+|.+|..+|+|++|+.++.++|++ 
T Consensus       115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~--~-------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~  185 (293)
T 3u3w_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI--D-------VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQL  185 (293)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCS--C-------TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccc--c-------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            44555688888999999999999999998432211  1       0123558999999999999999999999999953 


Q ss_pred             ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHHHH
Q 006908          477 ------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS-----EPDATAALSKLKKQRQ  530 (626)
Q Consensus       477 ------dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~-----~~~~~~~l~~l~~~~~  530 (626)
                            .+..+.+++++|.+|..+|+|++|+..|++|+++.+..     ...+...+..+...+.
T Consensus       186 ~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g  250 (293)
T 3u3w_A          186 EALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLE  250 (293)
T ss_dssp             HHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTT
T ss_pred             HhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhC
Confidence                  22346799999999999999999999999999986432     1456666666665554

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.68  E-value=8.6e-08  Score=100.64  Aligned_cols=108  Identities=10%  Similarity=0.106  Sum_probs=94.4

Q ss_pred             HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (626)
Q Consensus       395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL  474 (626)
                      ...+..+...|..++..|+|++|+..|.+|+.......  +       ....+.++.|+|.||..+|+|++|+.++.+++
T Consensus       181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~-------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al  251 (383)
T 3ulq_A          181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK--Q-------PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAI  251 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--C-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC--C-------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            44567788899999999999999999999999655331  1       22346789999999999999999999999999


Q ss_pred             H-----hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006908          475 D-----AN-PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (626)
Q Consensus       475 ~-----~d-p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~  511 (626)
                      .     .+ |..+.+++++|.++..+|++++|+..|++|+++.
T Consensus       252 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  294 (383)
T 3ulq_A          252 AVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYS  294 (383)
T ss_dssp             HHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            9     46 7889999999999999999999999999999984

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.67  E-value=2.4e-07  Score=78.31  Aligned_cols=87  Identities=11%  Similarity=0.103  Sum_probs=77.2

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (626)
Q Consensus       447 ~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~  526 (626)
                      +..++++|.+++..++|.+|+..+.+++..+|.++.+++++|.++..+|++++|+..|+++++++|++ ..+...+..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~   82 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-GKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc-HHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999997 56777777766


Q ss_pred             HHHHHHHH
Q 006908          527 KQRQEVES  534 (626)
Q Consensus       527 ~~~~~~~~  534 (626)
                      .......+
T Consensus        83 ~~~~~~~~   90 (118)
T 1elw_A           83 EFLNRFEE   90 (118)
T ss_dssp             HHTTCHHH
T ss_pred             HHHhhHHH
Confidence            55544443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.66  E-value=1.4e-07  Score=84.51  Aligned_cols=108  Identities=22%  Similarity=0.244  Sum_probs=90.8

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~  476 (626)
                      .+..+...|..++..|+|++|+..|.+++.......  +       ......++.++|.++..+++|++|+..+.+++.+
T Consensus        48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~--~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  118 (164)
T 3ro3_A           48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK--D-------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI  118 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--C-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC--C-------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            456778899999999999999999999999655332  1       1234668999999999999999999999999987


Q ss_pred             CC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908          477 NP------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (626)
Q Consensus       477 dp------~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~  513 (626)
                      .+      ..+.+++.+|.++..+|++++|+..|++++++...
T Consensus       119 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          119 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            43      22678999999999999999999999999987543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.66  E-value=5.1e-07  Score=91.20  Aligned_cols=123  Identities=13%  Similarity=0.088  Sum_probs=92.7

Q ss_pred             HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH---H
Q 006908          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL---D  475 (626)
Q Consensus       399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL---~  475 (626)
                      ..+...|..+...|+|++|+..|.+|+.........         .....+++|+|.+|..+|+|++|+.++.+|+   .
T Consensus       116 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~  186 (293)
T 2qfc_A          116 QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV---------YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLE  186 (293)
T ss_dssp             HHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT---------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            334557777788889999999999999743321111         1135689999999999999999999999999   4


Q ss_pred             hCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHHHH
Q 006908          476 ANPAH----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS-----EPDATAALSKLKKQRQ  530 (626)
Q Consensus       476 ~dp~~----~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~-----~~~~~~~l~~l~~~~~  530 (626)
                      ..|.+    +.+++++|.+|..+|+|++|+..|++|+++.+..     ...+...+..+...+.
T Consensus       187 ~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g  250 (293)
T 2qfc_A          187 ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLE  250 (293)
T ss_dssp             HSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTT
T ss_pred             hcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence            45654    3799999999999999999999999999985321     1345555665554443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.66  E-value=1.8e-07  Score=88.04  Aligned_cols=106  Identities=11%  Similarity=0.121  Sum_probs=90.8

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~  476 (626)
                      .+..+...|..++..|+|++|+..|.+++........         ......+++|+|.++..+|+|.+|+..+.+++.+
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   95 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD---------HTAEHRALHQVGMVERMAGNWDAARRCFLEEREL   95 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC---------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4677888999999999999999999999997654321         1234678999999999999999999999999998


Q ss_pred             ---CC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006908          477 ---NP----AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (626)
Q Consensus       477 ---dp----~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~  511 (626)
                         .+    ....+++++|.++..+|++++|+..|++++.+.
T Consensus        96 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  137 (203)
T 3gw4_A           96 LASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYA  137 (203)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence               33    336789999999999999999999999999873

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.66  E-value=7.2e-08  Score=96.87  Aligned_cols=129  Identities=16%  Similarity=0.187  Sum_probs=101.6

Q ss_pred             HHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006908          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (626)
Q Consensus       396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~  475 (626)
                      ..+..+...|..++..|+|++|+..|.+++.........+       ......++.++|.++..+|+|.+|+..+.+++.
T Consensus        67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  139 (311)
T 3nf1_A           67 DVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD-------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE  139 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC-------ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence            3466778899999999999999999999998643321111       123466899999999999999999999999998


Q ss_pred             hC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHHHH
Q 006908          476 AN--------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV--------DKSSEPDATAALSKLKKQRQEV  532 (626)
Q Consensus       476 ~d--------p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l--------~P~~~~~~~~~l~~l~~~~~~~  532 (626)
                      +.        |....+++++|.++..+|++++|+..|++++.+        +|.. ..+...+..+.....+.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~  211 (311)
T 3nf1_A          140 IREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNV-AKTKNNLASCYLKQGKF  211 (311)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHH-HHHHHHHHHHHHHHTCH
T ss_pred             HHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHHHHcCCH
Confidence            84        566889999999999999999999999999998        4432 34555566555444433

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.64  E-value=1.8e-07  Score=81.20  Aligned_cols=88  Identities=16%  Similarity=0.211  Sum_probs=78.2

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006908          446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (626)
Q Consensus       446 ~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l  525 (626)
                      ....++++|.+++..++|.+|+..+.+++.++|.+..+++.+|.++..++++++|+..|+++++++|.+ ..+...+..+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~   93 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF-IKGYTRKAAA   93 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-hHHHHHHHHH
Confidence            356899999999999999999999999999999999999999999999999999999999999999997 5677777776


Q ss_pred             HHHHHHHHH
Q 006908          526 KKQRQEVES  534 (626)
Q Consensus       526 ~~~~~~~~~  534 (626)
                      .....+..+
T Consensus        94 ~~~~~~~~~  102 (133)
T 2lni_A           94 LEAMKDYTK  102 (133)
T ss_dssp             HHHTTCHHH
T ss_pred             HHHHhhHHH
Confidence            655544443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.64  E-value=1.2e-07  Score=99.44  Aligned_cols=132  Identities=12%  Similarity=0.044  Sum_probs=104.4

Q ss_pred             HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (626)
Q Consensus       395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL  474 (626)
                      ...+..+...|..++..|++..|+.+|.+|+..+......        ....+.+++|+|.||..+|+|++|+.++.+|+
T Consensus       138 ~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al  209 (378)
T 3q15_A          138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY--------SIRTIQSLFVIAGNYDDFKHYDKALPHLEAAL  209 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc--------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            4567778888888999999999999999998865533211        11346789999999999999999999999999


Q ss_pred             HhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006908          475 DANP------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMK-----VDKSSEPDATAALSKLKKQRQEVESK  535 (626)
Q Consensus       475 ~~dp------~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~-----l~P~~~~~~~~~l~~l~~~~~~~~~~  535 (626)
                      .+.+      ..+.+++++|.+|..+|++++|+..|++|++     .+|.. ..+...+..+.....+..++
T Consensus       210 ~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A  280 (378)
T 3q15_A          210 ELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGLSWTLCKAGQTQKA  280 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHHHHHHHHHHCCCHHHH
Confidence            8743      2357899999999999999999999999999     66665 56777777776655544433

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.64  E-value=1.1e-07  Score=95.90  Aligned_cols=105  Identities=18%  Similarity=0.254  Sum_probs=91.6

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA-  476 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~-  476 (626)
                      +..+...|..++..|+|++|+..|++++.    ..|.+.       .....++.++|.+++.+|+|.+|+..+.+++.+ 
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~----~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   73 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQ----VGTEDL-------KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA   73 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCSCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHh----hCcccH-------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            55677899999999999999999999999    455542       233568999999999999999999999999987 


Q ss_pred             -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908          477 -----NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (626)
Q Consensus       477 -----dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~  513 (626)
                           .|..+.+++.+|.++..+|++++|+..|++++++.|.
T Consensus        74 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  115 (338)
T 3ro2_A           74 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE  115 (338)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence                 4556889999999999999999999999999998553

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.64  E-value=2.3e-07  Score=102.97  Aligned_cols=120  Identities=17%  Similarity=0.120  Sum_probs=99.8

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +..+...|..+++.|++++|+..|++++.    +.|.+           ..+|++++.+|.+.|++++|+..+.+++.++
T Consensus       373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  437 (597)
T 2xpi_A          373 AVTWLAVGIYYLCVNKISEARRYFSKSST----MDPQF-----------GPAWIGFAHSFAIEGEHDQAISAYTTAARLF  437 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            34556678888899999999999999988    45544           4578899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 006908          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVE  533 (626)
Q Consensus       478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~  533 (626)
                      |.+..+++.+|.+|...|++++|+..|+++++++|.+ ..+...+..+........
T Consensus       438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~  492 (597)
T 2xpi_A          438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD-PLLLNELGVVAFNKSDMQ  492 (597)
T ss_dssp             TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHTTCHH
T ss_pred             ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHhCCHH
Confidence            9999999999999999999999999999999999987 566666666655444333

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.63  E-value=1.3e-07  Score=95.03  Aligned_cols=108  Identities=17%  Similarity=0.160  Sum_probs=92.0

Q ss_pred             HHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006908          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (626)
Q Consensus       396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~  475 (626)
                      ..+..+...|..++..|+|++|+..|.+++.........+       ......++.++|.++..+|+|.+|+..+.+++.
T Consensus       109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  181 (311)
T 3nf1_A          109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD-------HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE  181 (311)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC-------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3466778899999999999999999999998543221111       123456899999999999999999999999999


Q ss_pred             h--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908          476 A--------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (626)
Q Consensus       476 ~--------dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l  510 (626)
                      +        +|....+++.+|.++..+|++++|+..|++++++
T Consensus       182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  224 (311)
T 3nf1_A          182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR  224 (311)
T ss_dssp             HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            8        7777889999999999999999999999999986

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.63  E-value=2.3e-08  Score=109.01  Aligned_cols=102  Identities=14%  Similarity=0.121  Sum_probs=88.7

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +..+...|..+++.|+|++|+..|++|+.    +.|.+           ..+++|+|.+|.++|+|++|+..+.++++++
T Consensus        40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~----l~p~~-----------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~  104 (477)
T 1wao_1           40 AIYYGNRSLAYLRTECYGYALGDATRAIE----LDKKY-----------IKGYYRRAASNMALGKFRAALRDYETVVKVK  104 (477)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----SCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            56677899999999999999999999999    67765           4589999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHhcCCCC
Q 006908          478 PAHVKGLYRRGMA--YMALGEFEEAQRDFE-----------MMMKVDKSS  514 (626)
Q Consensus       478 p~~~ka~~~~g~a--~~~lg~~~eA~~~~~-----------kAl~l~P~~  514 (626)
                      |++..+++.++.+  +..+|++++|++.++           +++.++|+.
T Consensus       105 p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1          105 PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            9999999999999  889999999999999           888887754

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.60  E-value=1.5e-07  Score=98.51  Aligned_cols=105  Identities=18%  Similarity=0.254  Sum_probs=91.7

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA-  476 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~-  476 (626)
                      +..+...|..++..|+|++|+..|++++.    ..|.+.       .....++.++|.+++.+|+|.+|+..+.+++.+ 
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~----~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   77 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQ----VGTEDL-------KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA   77 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCSCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHh----cCcccH-------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            55677899999999999999999999999    455542       234568999999999999999999999999987 


Q ss_pred             -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908          477 -----NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (626)
Q Consensus       477 -----dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~  513 (626)
                           .|..+.+++++|.++..+|++++|+..|++|+++.|.
T Consensus        78 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  119 (406)
T 3sf4_A           78 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE  119 (406)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence                 3556889999999999999999999999999998653

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.59  E-value=1.6e-07  Score=101.01  Aligned_cols=119  Identities=11%  Similarity=0.036  Sum_probs=94.7

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcC--CHHHHHHHHHHHHH
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG--ECRKSIEACNKVLD  475 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~--~~~~A~~~~~~aL~  475 (626)
                      +..+.+.|..++..|+|++|+.+|++++.+........       ......+++|+|.++++++  +|++|+.+|.+||+
T Consensus        94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~  166 (472)
T 4g1t_A           94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY-------RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE  166 (472)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS-------CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc-------chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence            44566789999999999999999999998655432111       1112457888998888765  69999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 006908          476 ANPAHVKGLYRRGMAYMA---LGEFEEAQRDFEMMMKVDKSSEPDATAALSK  524 (626)
Q Consensus       476 ~dp~~~ka~~~~g~a~~~---lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~  524 (626)
                      ++|+++.+++.+|.++..   .+++++|+..|++|++++|++ ..+...+..
T Consensus       167 ~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~-~~~~~~l~~  217 (472)
T 4g1t_A          167 KKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN-QYLKVLLAL  217 (472)
T ss_dssp             HSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC-HHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc-hHHHHHHHH
Confidence            999999999999998654   577789999999999999997 555555543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.59  E-value=3.1e-07  Score=79.71  Aligned_cols=96  Identities=19%  Similarity=0.215  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHH
Q 006908          449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHV---KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE--PDATAALS  523 (626)
Q Consensus       449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~---ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~--~~~~~~l~  523 (626)
                      .++++|.+++..|+|.+|+..+.+++..+|++.   .+++++|.++..+|+|++|+..|++++.++|++.  ..+...+.
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la   83 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG   83 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence            578899999999999999999999999999998   8999999999999999999999999999999863  34566666


Q ss_pred             HHHHHHHHHHHHHHHHHHcccc
Q 006908          524 KLKKQRQEVESKARKQFKGLFD  545 (626)
Q Consensus       524 ~l~~~~~~~~~~~~~~~~~~~~  545 (626)
                      .+.....+..+.. ..+.+...
T Consensus        84 ~~~~~~g~~~~A~-~~~~~~~~  104 (129)
T 2xev_A           84 LSQYGEGKNTEAQ-QTLQQVAT  104 (129)
T ss_dssp             HHHHHTTCHHHHH-HHHHHHHH
T ss_pred             HHHHHcCCHHHHH-HHHHHHHH
Confidence            6655444433332 33444443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.58  E-value=1.4e-07  Score=89.29  Aligned_cols=89  Identities=15%  Similarity=0.059  Sum_probs=78.0

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006908          446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV----------------KGLYRRGMAYMALGEFEEAQRDFEMMMK  509 (626)
Q Consensus       446 ~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~----------------ka~~~~g~a~~~lg~~~eA~~~~~kAl~  509 (626)
                      .+..+.++|.++++.++|.+|+..+.+++.+.|.++                .+++++|.++..+|+|++|+.+|++|++
T Consensus        37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  116 (198)
T 2fbn_A           37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK  116 (198)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            356788999999999999999999999999999887                8999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006908          510 VDKSSEPDATAALSKLKKQRQEVESK  535 (626)
Q Consensus       510 l~P~~~~~~~~~l~~l~~~~~~~~~~  535 (626)
                      ++|++ ..+...+..+...+.+..+.
T Consensus       117 ~~p~~-~~~~~~lg~~~~~~~~~~~A  141 (198)
T 2fbn_A          117 IDKNN-VKALYKLGVANMYFGFLEEA  141 (198)
T ss_dssp             HSTTC-HHHHHHHHHHHHHHTCHHHH
T ss_pred             hCccc-HHHHHHHHHHHHHcccHHHH
Confidence            99997 56777777776655554443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.56  E-value=1e-06  Score=87.49  Aligned_cols=74  Identities=16%  Similarity=0.142  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHH
Q 006908          448 LLHLNVAACLLK----LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVDKSSEPDAT  519 (626)
Q Consensus       448 ~~~~Nla~~~~k----l~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~----lg~~~eA~~~~~kAl~l~P~~~~~~~  519 (626)
                      .+++++|.+|..    .+++.+|+..+.++++.  .++.+++++|.+|..    .+++++|+.+|++|+++++   ..+.
T Consensus        75 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~a~  149 (273)
T 1ouv_A           75 NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND---GDGC  149 (273)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC---HHHH
T ss_pred             HHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc---HHHH
Confidence            355556666665    56666666666666555  255566666666665    5666666666666665542   2344


Q ss_pred             HHHHHHH
Q 006908          520 AALSKLK  526 (626)
Q Consensus       520 ~~l~~l~  526 (626)
                      ..+..+.
T Consensus       150 ~~lg~~~  156 (273)
T 1ouv_A          150 TILGSLY  156 (273)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.55  E-value=4e-07  Score=92.72  Aligned_cols=112  Identities=12%  Similarity=0.046  Sum_probs=73.2

Q ss_pred             HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006908          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (626)
Q Consensus       400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~  479 (626)
                      .+...|..+.+.|++++|...|++++.    +.|.+.+          .+|+++|.++.++|++++|+..+.+|++++|.
T Consensus       101 ~~~~~~~~~~~~~~~~~A~~~~~~al~----~~p~~~~----------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~  166 (308)
T 2ond_A          101 LYFAYADYEESRMKYEKVHSIYNRLLA----IEDIDPT----------LVYIQYMKFARRAEGIKSGRMIFKKAREDART  166 (308)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHT----SSSSCTH----------HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHh----ccccCcc----------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Confidence            455667777778888888888888888    5555421          15666777777777777777777777777776


Q ss_pred             CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908          480 HVKGLYRRGMAYMA-LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (626)
Q Consensus       480 ~~ka~~~~g~a~~~-lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~  526 (626)
                      +..+|+..+..... +|++++|+..|++|++++|++ ..+...+..+.
T Consensus       167 ~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~  213 (308)
T 2ond_A          167 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI-PEYVLAYIDYL  213 (308)
T ss_dssp             CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHH
Confidence            66666544444332 577777777777777777765 44554444443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.55  E-value=9.1e-07  Score=76.06  Aligned_cols=88  Identities=17%  Similarity=0.195  Sum_probs=77.7

Q ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006908          446 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (626)
Q Consensus       446 ~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l  525 (626)
                      ...++.++|.+++..++|..|+..+.+++..+|.++.+++.+|.++..+|++++|+..|++++.++|++ ..+...+..+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~   89 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY-SKAYGRMGLA   89 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC-HHHHHHHHHH
Confidence            356889999999999999999999999999999999999999999999999999999999999999997 5677777766


Q ss_pred             HHHHHHHHH
Q 006908          526 KKQRQEVES  534 (626)
Q Consensus       526 ~~~~~~~~~  534 (626)
                      ........+
T Consensus        90 ~~~~~~~~~   98 (131)
T 2vyi_A           90 LSSLNKHVE   98 (131)
T ss_dssp             HHHTTCHHH
T ss_pred             HHHhCCHHH
Confidence            655544433

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.55  E-value=5.9e-07  Score=79.57  Aligned_cols=88  Identities=13%  Similarity=0.122  Sum_probs=77.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 006908          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS  523 (626)
Q Consensus       447 ~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~---~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~  523 (626)
                      ...++++|.+++..++|.+|+..+.+++.++|++   ..+++++|.++..+++|++|+..|+++++++|++ ..+...+.
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a  106 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD-VKALYRRS  106 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC-HHHHHHHH
Confidence            5678899999999999999999999999999988   8999999999999999999999999999999997 66777777


Q ss_pred             HHHHHHHHHHHH
Q 006908          524 KLKKQRQEVESK  535 (626)
Q Consensus       524 ~l~~~~~~~~~~  535 (626)
                      .+.....+..+.
T Consensus       107 ~~~~~~~~~~~A  118 (148)
T 2dba_A          107 QALEKLGRLDQA  118 (148)
T ss_dssp             HHHHHHTCHHHH
T ss_pred             HHHHHcCCHHHH
Confidence            776655544443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.52  E-value=5.1e-07  Score=90.92  Aligned_cols=84  Identities=14%  Similarity=0.140  Sum_probs=75.0

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (626)
Q Consensus       447 ~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~  526 (626)
                      +..+.++|.++++.|+|.+|+..+.+++.++|.++.+|+++|.+|..+|+|++|+.+|++|++++|++ ..+...+..+.
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~   82 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-VKAHFFLGQCQ   82 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999998 56666666655


Q ss_pred             HHHHH
Q 006908          527 KQRQE  531 (626)
Q Consensus       527 ~~~~~  531 (626)
                      ....+
T Consensus        83 ~~~g~   87 (281)
T 2c2l_A           83 LEMES   87 (281)
T ss_dssp             HHTTC
T ss_pred             HHcCC
Confidence            44433

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.52  E-value=1.2e-06  Score=74.62  Aligned_cols=85  Identities=21%  Similarity=0.378  Sum_probs=75.3

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (626)
Q Consensus       447 ~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~  526 (626)
                      ..+++++|.++...++|.+|+..+.+++..+|.+..+++.+|.++...|++++|+..|++++.++|.+ ..+...+..+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~   87 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999987 56666666665


Q ss_pred             HHHHHH
Q 006908          527 KQRQEV  532 (626)
Q Consensus       527 ~~~~~~  532 (626)
                      ......
T Consensus        88 ~~~~~~   93 (125)
T 1na0_A           88 YKQGDY   93 (125)
T ss_dssp             HHTTCH
T ss_pred             HHhcCH
Confidence            544433

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.52  E-value=4.4e-07  Score=94.79  Aligned_cols=107  Identities=19%  Similarity=0.179  Sum_probs=91.8

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~  476 (626)
                      .+..+...|..++..|+|++|+..|.+++........         ......++.++|.++..+|++.+|+..+.+++.+
T Consensus       186 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  256 (406)
T 3sf4_A          186 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---------KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL  256 (406)
T ss_dssp             HHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC---------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            4556778899999999999999999999986543211         1233568999999999999999999999999998


Q ss_pred             CCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 006908          477 NPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK  512 (626)
Q Consensus       477 dp~~------~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P  512 (626)
                      .+..      +.+++++|.++..+|++++|+..|++|+++.+
T Consensus       257 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  298 (406)
T 3sf4_A          257 ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  298 (406)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            7765      78999999999999999999999999999854

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.51  E-value=9.2e-07  Score=98.27  Aligned_cols=114  Identities=17%  Similarity=0.082  Sum_probs=99.1

Q ss_pred             HHHHhhhchhhcccc----------HHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcC--CHHHH
Q 006908          399 EKIRVTGNRLFKEGK----------FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG--ECRKS  466 (626)
Q Consensus       399 ~~~k~~Gn~~f~~g~----------~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~--~~~~A  466 (626)
                      ..+..+|..+.+.++          |++|+..|.+++.    .+|.+           ..+|++++.++.+++  +|.+|
T Consensus        64 taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~----~~pK~-----------y~aW~hR~w~l~~l~~~~~~~e  128 (567)
T 1dce_A           64 TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR----VNPKS-----------YGTWHHRCWLLSRLPEPNWARE  128 (567)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHTCSSCCHHHH
T ss_pred             HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcccccHHHH
Confidence            345556666666666          9999999999999    67776           569999999999999  77999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006908          467 IEACNKVLDANPAHVKGLYRRGMAYMALG-EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (626)
Q Consensus       467 ~~~~~~aL~~dp~~~ka~~~~g~a~~~lg-~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~  528 (626)
                      +.+|.++|++||.|..||+.|+.++..++ .+++|++++.++++++|.| ..++.....+...
T Consensus       129 l~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n-~saW~~r~~ll~~  190 (567)
T 1dce_A          129 LELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN-YSSWHYRSCLLPQ  190 (567)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCC-ccHHHHHHHHHHh
Confidence            99999999999999999999999999999 9999999999999999998 4677776666544

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.50  E-value=9.6e-07  Score=73.17  Aligned_cols=67  Identities=13%  Similarity=0.083  Sum_probs=62.7

Q ss_pred             hHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908          447 NLLHLNVAACLLKLGE---CRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (626)
Q Consensus       447 ~~~~~Nla~~~~kl~~---~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~  513 (626)
                      ..++..+|.+++..++   ..+|...+.++|.+||++++|++.+|.+++..|+|++|+..|+++++.+|.
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            3478889999987766   799999999999999999999999999999999999999999999999998

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.50  E-value=7.1e-07  Score=90.90  Aligned_cols=87  Identities=11%  Similarity=0.025  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH
Q 006908          414 FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK-GLYRRGMAYM  492 (626)
Q Consensus       414 ~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~k-a~~~~g~a~~  492 (626)
                      +++|+..|++|+..   +.|.+           ..+|.++|.++.++|++++|+..|.++|+++|.++. +|+++|.++.
T Consensus        80 ~~~A~~~~~rAl~~---~~p~~-----------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  145 (308)
T 2ond_A           80 SDEAANIYERAIST---LLKKN-----------MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR  145 (308)
T ss_dssp             HHHHHHHHHHHHTT---TTTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH---hCccc-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHH
Confidence            49999999999983   14554           458999999999999999999999999999999987 9999999999


Q ss_pred             HcCCHHHHHHHHHHHHhcCCCC
Q 006908          493 ALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       493 ~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      .+|++++|+..|++|++++|.+
T Consensus       146 ~~~~~~~A~~~~~~a~~~~p~~  167 (308)
T 2ond_A          146 RAEGIKSGRMIFKKAREDARTR  167 (308)
T ss_dssp             HHHCHHHHHHHHHHHHTSTTCC
T ss_pred             HhcCHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999999976

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.49  E-value=4.9e-07  Score=90.57  Aligned_cols=108  Identities=13%  Similarity=0.028  Sum_probs=86.7

Q ss_pred             HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Q 006908          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN--  477 (626)
Q Consensus       400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d--  477 (626)
                      .....|..+++.++|..|+..|+.++.    . + ++       .+...+++++|.++..+|++.+|+..|.+++.-.  
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~----~-~-d~-------~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~  203 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGK----W-P-DK-------FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAG  203 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGG----C-S-CH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhc----c-C-Cc-------ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCC
Confidence            556778888899999999999986655    1 1 10       0123588999999999999999999999998654  


Q ss_pred             CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 006908          478 PA-HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAAL  522 (626)
Q Consensus       478 p~-~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l  522 (626)
                      |. ...++|++|.|+..+|+.++|+..|++++..+|+  ..+...|
T Consensus       204 P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~--~~~~~aL  247 (282)
T 4f3v_A          204 EACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE--PKVAAAL  247 (282)
T ss_dssp             TTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC--HHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--HHHHHHH
Confidence            55 6679999999999999999999999999999998  4455444

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.49  E-value=3.3e-07  Score=85.09  Aligned_cols=108  Identities=15%  Similarity=0.074  Sum_probs=87.3

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHH------------------HH------HhhhhhHHHHH
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG------------------KV------FVGKRNLLHLN  452 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~------------------~~------~~~~~~~~~~N  452 (626)
                      .+..+...|..++..|++++|+..|++++.    ..| +..-.                  ..      ..+....++++
T Consensus        39 ~~~a~~~la~~~~~~g~~~~A~~~~~~a~~----~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~  113 (176)
T 2r5s_A           39 RGDVKLAKADCLLETKQFELAQELLATIPL----EYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACE  113 (176)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHTTCCG----GGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHhhh----ccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHH
Confidence            355677888889999999999999988776    333 22100                  00      11123568899


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006908          453 VAACLLKLGECRKSIEACNKVLDANPAH--VKGLYRRGMAYMALGEFEEAQRDFEMMMK  509 (626)
Q Consensus       453 la~~~~kl~~~~~A~~~~~~aL~~dp~~--~ka~~~~g~a~~~lg~~~eA~~~~~kAl~  509 (626)
                      +|.++..+|++++|+..+.++++++|.+  ..+++++|.++..+|++++|+..|+++|.
T Consensus       114 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          114 LAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            9999999999999999999999999976  66999999999999999999999999885

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.47  E-value=1.5e-06  Score=73.42  Aligned_cols=82  Identities=11%  Similarity=0.024  Sum_probs=70.2

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 006908          447 NLLHLNVAACLLKLGECRKSIEACNKVLDAN-------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDAT  519 (626)
Q Consensus       447 ~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d-------p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~  519 (626)
                      +.-++.+|..+++.++|..|+..+..|+...       +..+..++++|.|+..+|+++.|+..+++|++++|++ ..+.
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~-~~~~   83 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH-QRAN   83 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-HHHH
Confidence            4457789999999999999999999999863       3457889999999999999999999999999999998 5666


Q ss_pred             HHHHHHHHHH
Q 006908          520 AALSKLKKQR  529 (626)
Q Consensus       520 ~~l~~l~~~~  529 (626)
                      .++..++..+
T Consensus        84 ~n~~~~~~~~   93 (104)
T 2v5f_A           84 GNLKYFEYIM   93 (104)
T ss_dssp             HHHHHHHHHH
T ss_pred             hhHHHHHHHH
Confidence            6766555443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.45  E-value=1e-06  Score=82.78  Aligned_cols=109  Identities=15%  Similarity=0.102  Sum_probs=90.1

Q ss_pred             HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (626)
Q Consensus       395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL  474 (626)
                      ...+..+...|..++..|+|++|+..|.+++..+... +++.       .....+++|+|.++..+|+|++|+..+.+++
T Consensus        63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~-------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  134 (203)
T 3gw4_A           63 TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASL-PEDP-------LAASANAYEVATVALHFGDLAGARQEYEKSL  134 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-CCCH-------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CccH-------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            3456778889999999999999999999999975532 2121       1245689999999999999999999999999


Q ss_pred             HhCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006908          475 DANP--AH----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (626)
Q Consensus       475 ~~dp--~~----~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~  511 (626)
                      .+.+  .+    +.+++++|.++..+|++++|+..|++|+.+.
T Consensus       135 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  177 (203)
T 3gw4_A          135 VYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF  177 (203)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence            7642  22    4567999999999999999999999999874

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.44  E-value=6.4e-07  Score=94.14  Aligned_cols=92  Identities=11%  Similarity=0.063  Sum_probs=83.6

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~  476 (626)
                      .+..+.+.|..+++.|+|++|+.+|++|+.    +.|.+           ..+|+++|.||..+++|++|+.++.+|+++
T Consensus       272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l  336 (370)
T 1ihg_A          272 ALSCVLNIGACKLKMSDWQGAVDSCLEALE----IDPSN-----------TKALYRRAQGWQGLKEYDQALADLKKAQEI  336 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----TCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHH----hCchh-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            355677899999999999999999999999    66665           568999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006908          477 NPAHVKGLYRRGMAYMALGEFEEAQRD  503 (626)
Q Consensus       477 dp~~~ka~~~~g~a~~~lg~~~eA~~~  503 (626)
                      +|++..++..++.++..++++++|.+.
T Consensus       337 ~P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          337 APEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999887654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.44  E-value=1.5e-06  Score=96.58  Aligned_cols=112  Identities=13%  Similarity=0.065  Sum_probs=95.3

Q ss_pred             hhhchhhccccH-HHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCC----------HHHHHHHHH
Q 006908          403 VTGNRLFKEGKF-ELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE----------CRKSIEACN  471 (626)
Q Consensus       403 ~~Gn~~f~~g~~-~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~----------~~~A~~~~~  471 (626)
                      .....+.+.+.| ++|+..|.+++.    .+|.+           .++|++++.++.++++          +.+|+..+.
T Consensus        33 ~~~~~~~~~~~~~eeal~~~~~~l~----~nP~~-----------~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~   97 (567)
T 1dce_A           33 QAVFQKRQAGELDESVLELTSQILG----ANPDF-----------ATLWNCRREVLQHLETEKSPEESAALVKAELGFLE   97 (567)
T ss_dssp             HHHHHHHHTTCCSHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHH----HCchh-----------HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHH
Confidence            333344445554 578999999999    67776           6799999999999998          999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006908          472 KVLDANPAHVKGLYRRGMAYMALG--EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (626)
Q Consensus       472 ~aL~~dp~~~ka~~~~g~a~~~lg--~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~  530 (626)
                      ++|+.+|.+..||+.|+.++..++  +|++|++.+.++++++|.| -.++.....+.....
T Consensus        98 ~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N-~~aW~~R~~~l~~l~  157 (567)
T 1dce_A           98 SCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN-FHCWDYRRFVAAQAA  157 (567)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTC
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcccc-ccHHHHHHHHHHHcC
Confidence            999999999999999999999999  7799999999999999998 567777766655543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.42  E-value=1.5e-06  Score=83.43  Aligned_cols=78  Identities=13%  Similarity=0.062  Sum_probs=55.5

Q ss_pred             hHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHH
Q 006908          447 NLLHLNVAACLLK----LGECRKSIEACNKVLDANP--AHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVDKSSEP  516 (626)
Q Consensus       447 ~~~~~Nla~~~~k----l~~~~~A~~~~~~aL~~dp--~~~ka~~~~g~a~~~----lg~~~eA~~~~~kAl~l~P~~~~  516 (626)
                      ..+++|+|.+|..    .+++.+|+..+.++++..+  .++.|++++|.+|..    .+++++|+.+|++|+++ |.+ .
T Consensus        85 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~-~  162 (212)
T 3rjv_A           85 KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRT-G  162 (212)
T ss_dssp             HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCT-T
T ss_pred             HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCC-H
Confidence            3467778887777    7778888888888877766  347788888888877    77788888888888777 333 3


Q ss_pred             HHHHHHHHHH
Q 006908          517 DATAALSKLK  526 (626)
Q Consensus       517 ~~~~~l~~l~  526 (626)
                      .+...|..+.
T Consensus       163 ~a~~~Lg~~y  172 (212)
T 3rjv_A          163 YAEYWAGMMF  172 (212)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4555555554

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.42  E-value=8.1e-07  Score=89.58  Aligned_cols=107  Identities=20%  Similarity=0.196  Sum_probs=91.4

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~  476 (626)
                      .+..+...|..++..|+|++|+..|++++.......  +       ......++.++|.++..+|++.+|+..+.+++.+
T Consensus       182 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  252 (338)
T 3ro2_A          182 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--D-------KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL  252 (338)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT--C-------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC--C-------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            455677889999999999999999999998544321  1       1233568999999999999999999999999998


Q ss_pred             CCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 006908          477 NPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK  512 (626)
Q Consensus       477 dp~~------~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P  512 (626)
                      .+..      ..+++.+|.++..+|++++|+..|++|+.+.+
T Consensus       253 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  294 (338)
T 3ro2_A          253 ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  294 (338)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            7655      78999999999999999999999999999854

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.41  E-value=1.3e-06  Score=75.11  Aligned_cols=86  Identities=12%  Similarity=0.228  Sum_probs=72.6

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH------HHHHH
Q 006908          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE------PDATA  520 (626)
Q Consensus       447 ~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~------~~~~~  520 (626)
                      +..++++|.+++..++|.+|+..+.+++.++|.++.+++++|.++..+|++++|+..|++++.++|.+.      ..+..
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            457889999999999999999999999999999999999999999999999999999999999987541      34555


Q ss_pred             HHHHHHHHHHHH
Q 006908          521 ALSKLKKQRQEV  532 (626)
Q Consensus       521 ~l~~l~~~~~~~  532 (626)
                      .+..+.......
T Consensus        84 ~la~~~~~~~~~   95 (131)
T 1elr_A           84 RIGNSYFKEEKY   95 (131)
T ss_dssp             HHHHHHHHTTCH
T ss_pred             HHHHHHHHhccH
Confidence            555554444433

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.40  E-value=8.3e-07  Score=76.33  Aligned_cols=75  Identities=20%  Similarity=0.200  Sum_probs=67.3

Q ss_pred             HHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006908          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (626)
Q Consensus       396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~  475 (626)
                      ..+..+...|..++..|+|++|+..|++++.    +.|.+           ..+++++|.|+.++|++.+|+..+.+++.
T Consensus        25 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~al~   89 (117)
T 3k9i_A           25 DLAECYLGLGSTFRTLGEYRKAEAVLANGVK----QFPNH-----------QALRVFYAMVLYNLGRYEQGVELLLKIIA   89 (117)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCc-----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4567788999999999999999999999999    56766           45899999999999999999999999999


Q ss_pred             hCCCCHHHHH
Q 006908          476 ANPAHVKGLY  485 (626)
Q Consensus       476 ~dp~~~ka~~  485 (626)
                      .+|++.....
T Consensus        90 ~~p~~~~~~~   99 (117)
T 3k9i_A           90 ETSDDETIQS   99 (117)
T ss_dssp             HHCCCHHHHH
T ss_pred             hCCCcHHHHH
Confidence            9999987654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.39  E-value=1.3e-06  Score=91.95  Aligned_cols=106  Identities=19%  Similarity=0.242  Sum_probs=90.0

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +..+...|..++..|+|++|+.+|++++.......  +       ......++.++|.+|..+|+|.+|+..+.+++.+.
T Consensus       223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  293 (411)
T 4a1s_A          223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG--D-------RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA  293 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--C-------HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC--C-------cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence            34667789999999999999999999998544311  1       12235689999999999999999999999999988


Q ss_pred             CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 006908          478 PAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK  512 (626)
Q Consensus       478 p~~------~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P  512 (626)
                      +..      +.+++.+|.++..+|++++|+..|++++.+.+
T Consensus       294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  334 (411)
T 4a1s_A          294 VELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ  334 (411)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            754      78999999999999999999999999999854

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.38  E-value=3.1e-06  Score=84.00  Aligned_cols=94  Identities=16%  Similarity=0.152  Sum_probs=53.8

Q ss_pred             HHHHHhhhchhhc----cccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHH----cCCHHHHHHH
Q 006908          398 AEKIRVTGNRLFK----EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK----LGECRKSIEA  469 (626)
Q Consensus       398 a~~~k~~Gn~~f~----~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~k----l~~~~~A~~~  469 (626)
                      +..+...|..++.    .+++++|+..|++|+..    .  +           ..+++++|.+|..    .+++++|+..
T Consensus        74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~--~-----------~~a~~~lg~~~~~~~~~~~~~~~A~~~  136 (273)
T 1ouv_A           74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----K--Y-----------AEGCASLGGIYHDGKVVTRDFKKAVEY  136 (273)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T--C-----------HHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----C--C-----------ccHHHHHHHHHHcCCCcccCHHHHHHH
Confidence            4455556666666    66666666666666652    1  1           2345555555555    5555555555


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 006908          470 CNKVLDANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKV  510 (626)
Q Consensus       470 ~~~aL~~dp~~~ka~~~~g~a~~~----lg~~~eA~~~~~kAl~l  510 (626)
                      +.++++++  +..+++++|.++..    .+++++|+.+|++|+++
T Consensus       137 ~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~  179 (273)
T 1ouv_A          137 FTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL  179 (273)
T ss_dssp             HHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence            55555543  45555555555555    55555555555555555

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.38  E-value=1.7e-06  Score=73.16  Aligned_cols=82  Identities=15%  Similarity=0.178  Sum_probs=68.2

Q ss_pred             HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006908          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (626)
Q Consensus       399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp  478 (626)
                      ......|..+|+.++|..|+..|++|+..+..-...        ......++.++|.|++++|++..|+..+.+++.++|
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~--------~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P   77 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEIS--------TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP   77 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC--------SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCC--------cccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence            345688999999999999999999999865322110        112356899999999999999999999999999999


Q ss_pred             CCHHHHHHHH
Q 006908          479 AHVKGLYRRG  488 (626)
Q Consensus       479 ~~~ka~~~~g  488 (626)
                      ++..++.+++
T Consensus        78 ~~~~~~~n~~   87 (104)
T 2v5f_A           78 EHQRANGNLK   87 (104)
T ss_dssp             TCHHHHHHHH
T ss_pred             CCHHHHhhHH
Confidence            9999988886

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.36  E-value=1.3e-06  Score=83.84  Aligned_cols=111  Identities=11%  Similarity=0.064  Sum_probs=94.3

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcC----CHHHHHHHHHHH
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG----ECRKSIEACNKV  473 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~----~~~~A~~~~~~a  473 (626)
                      +..+...|..++..+++++|+.+|++|+.    .  .+           ..+++|+|.+|.. +    ++.+|+..+.++
T Consensus        18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----~--g~-----------~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A   79 (212)
T 3rjv_A           18 RRAQYYLADTWVSSGDYQKAEYWAQKAAA----Q--GD-----------GDALALLAQLKIR-NPQQADYPQARQLAEKA   79 (212)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH----T--TC-----------HHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHH----c--CC-----------HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence            56777899999999999999999999998    2  12           4588999999998 7    999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHH
Q 006908          474 LDANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVDKS-SEPDATAALSKLKKQ  528 (626)
Q Consensus       474 L~~dp~~~ka~~~~g~a~~~----lg~~~eA~~~~~kAl~l~P~-~~~~~~~~l~~l~~~  528 (626)
                      ++  +.++.|++++|.+|..    .+++++|+.+|++|++..|. +...+...|..+...
T Consensus        80 ~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~  137 (212)
T 3rjv_A           80 VE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS  137 (212)
T ss_dssp             HH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred             HH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence            65  5799999999999998    89999999999999999883 124677777766544

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.35  E-value=3.9e-06  Score=85.49  Aligned_cols=113  Identities=9%  Similarity=-0.087  Sum_probs=96.7

Q ss_pred             HHHHHhhhchhhccc--cHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHH----HHc---CCHHHHHH
Q 006908          398 AEKIRVTGNRLFKEG--KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACL----LKL---GECRKSIE  468 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g--~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~----~kl---~~~~~A~~  468 (626)
                      ...+..+|..+...+  ++++|+..+.++|.    .+|.+           ..+|++++.++    .++   +++.+++.
T Consensus        67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~----~nPk~-----------y~aW~~R~~iL~~~~~~l~~~~~~~~EL~  131 (306)
T 3dra_A           67 YTIWIYRFNILKNLPNRNLYDELDWCEEIAL----DNEKN-----------YQIWNYRQLIIGQIMELNNNDFDPYREFD  131 (306)
T ss_dssp             HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH----HCTTC-----------CHHHHHHHHHHHHHHHHTTTCCCTHHHHH
T ss_pred             HHHHHHHHHHHHHcccccHHHHHHHHHHHHH----HCccc-----------HHHHHHHHHHHHHHHHhccccCCHHHHHH
Confidence            334556777777777  89999999999998    67766           56899999998    777   79999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908          469 ACNKVLDANPAHVKGLYRRGMAYMALGEFE--EAQRDFEMMMKVDKSSEPDATAALSKLK  526 (626)
Q Consensus       469 ~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~--eA~~~~~kAl~l~P~~~~~~~~~l~~l~  526 (626)
                      .|.++|+.+|.|..||+.|+.++..++.++  ++++.+.++++++|.|. .++.....+-
T Consensus       132 ~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~-sAW~~R~~ll  190 (306)
T 3dra_A          132 ILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNN-SAWSHRFFLL  190 (306)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCH-HHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCH-HHHHHHHHHH
Confidence            999999999999999999999999999999  99999999999999984 5665555443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.34  E-value=1.1e-06  Score=79.92  Aligned_cols=72  Identities=18%  Similarity=0.249  Sum_probs=64.4

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006908          458 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF----------EEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (626)
Q Consensus       458 ~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~----------~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~  527 (626)
                      -+++.|++|+..+.++++++|+++.+|+++|.++..++++          ++|+..|++||+++|++ .++...|..+..
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~-~~A~~~LG~ay~   91 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK-DEAVWCIGNAYT   91 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHH
Confidence            3567799999999999999999999999999999999876          59999999999999998 678888888876


Q ss_pred             HHH
Q 006908          528 QRQ  530 (626)
Q Consensus       528 ~~~  530 (626)
                      .+.
T Consensus        92 ~lg   94 (158)
T 1zu2_A           92 SFA   94 (158)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            553

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.33  E-value=4.5e-06  Score=85.05  Aligned_cols=103  Identities=11%  Similarity=0.032  Sum_probs=93.2

Q ss_pred             ccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHH
Q 006908          412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR--KSIEACNKVLDANPAHVKGLYRRGM  489 (626)
Q Consensus       412 g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~--~A~~~~~~aL~~dp~~~ka~~~~g~  489 (626)
                      +++.+++..+.+++.    .+|.+           ..+|++++.+..+++.|.  +++..|.++|+.+|.|..||..|+.
T Consensus       124 ~~~~~EL~~~~~~l~----~~pkn-----------y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~  188 (306)
T 3dra_A          124 FDPYREFDILEAMLS----SDPKN-----------HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFF  188 (306)
T ss_dssp             CCTHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            789999999999999    67776           569999999999999999  9999999999999999999999999


Q ss_pred             HHHHcCC------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006908          490 AYMALGE------FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (626)
Q Consensus       490 a~~~lg~------~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~  530 (626)
                      ++..++.      ++++++++.+++.++|+| ..++..+..+-....
T Consensus       189 ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n-~SaW~y~~~ll~~~~  234 (306)
T 3dra_A          189 LLFSKKHLATDNTIDEELNYVKDKIVKCPQN-PSTWNYLLGIHERFD  234 (306)
T ss_dssp             HHHSSGGGCCHHHHHHHHHHHHHHHHHCSSC-HHHHHHHHHHHHHTT
T ss_pred             HHHhccccchhhhHHHHHHHHHHHHHhCCCC-ccHHHHHHHHHHhcC
Confidence            9999998      999999999999999998 567777777654444

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.32  E-value=1.3e-06  Score=88.19  Aligned_cols=108  Identities=14%  Similarity=0.032  Sum_probs=81.4

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChh-----------------HHH------HHhhhhhHHHHHHH
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE-----------------EGK------VFVGKRNLLHLNVA  454 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~e-----------------e~~------~~~~~~~~~~~Nla  454 (626)
                      +..+...|..+...|++++|+..|++++.    ..|....                 ...      ...+-...+++|+|
T Consensus       151 ~~a~~~la~~~~~~g~~~~A~~~l~~~~~----~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la  226 (287)
T 3qou_A          151 GEIGLLLAETLIALNRSEDAEAVLXTIPL----QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLA  226 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHTTSCG----GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHhCch----hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHH
Confidence            44555666666677777777766666554    2221100                 000      01112246899999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006908          455 ACLLKLGECRKSIEACNKVLDANPAH--VKGLYRRGMAYMALGEFEEAQRDFEMMMK  509 (626)
Q Consensus       455 ~~~~kl~~~~~A~~~~~~aL~~dp~~--~ka~~~~g~a~~~lg~~~eA~~~~~kAl~  509 (626)
                      .++..+|++++|+..+.++++.+|++  ..++.+++.++..+|+.++|+..|++++.
T Consensus       227 ~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          227 LQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            99999999999999999999999998  99999999999999999999999999885

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.30  E-value=8.1e-06  Score=84.31  Aligned_cols=103  Identities=16%  Similarity=0.018  Sum_probs=90.1

Q ss_pred             ccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006908          412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-ECRKSIEACNKVLDANPAHVKGLYRRGMA  490 (626)
Q Consensus       412 g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~-~~~~A~~~~~~aL~~dp~~~ka~~~~g~a  490 (626)
                      +..++|+.++.++|.    ++|.+           .+++++++.+...++ .+.+++..+..+|..+|.+..+|+.|+.+
T Consensus        68 e~se~AL~lt~~~L~----~nP~~-----------ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wl  132 (349)
T 3q7a_A           68 EKSERALELTEIIVR----MNPAH-----------YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLL  132 (349)
T ss_dssp             CCSHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH----hCchh-----------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            455789999999999    77776           679999999999999 59999999999999999999999999999


Q ss_pred             HHHc-C-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006908          491 YMAL-G-EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (626)
Q Consensus       491 ~~~l-g-~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~  530 (626)
                      +..+ + +++++++.+.++++++|.| -.++.....+-..+.
T Consensus       133 L~~l~~~~~~~EL~~~~k~L~~dpkN-y~AW~~R~wvl~~l~  173 (349)
T 3q7a_A          133 LDRISPQDPVSEIEYIHGSLLPDPKN-YHTWAYLHWLYSHFS  173 (349)
T ss_dssp             HHHHCCSCCHHHHHHHHHHTSSCTTC-HHHHHHHHHHHHHHH
T ss_pred             HHHhcCCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhc
Confidence            9998 8 9999999999999999998 466666555544443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.30  E-value=1.3e-05  Score=82.34  Aligned_cols=100  Identities=18%  Similarity=0.105  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006908          414 FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG--ECRKSIEACNKVLDANPAHVKGLYRRGMAY  491 (626)
Q Consensus       414 ~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~--~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~  491 (626)
                      +.+++..+..++.    .+|.+           ..+|++++.+..+++  .|.+++..|.++|+++|.|..||+.|+.++
T Consensus        90 l~~EL~~~~~~L~----~~PKn-----------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl  154 (331)
T 3dss_A           90 VKAELGFLESCLR----VNPKS-----------YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVA  154 (331)
T ss_dssp             HHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            7889999999998    67776           569999999999999  499999999999999999999999999999


Q ss_pred             HHcCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 006908          492 MALGE-FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (626)
Q Consensus       492 ~~lg~-~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~  529 (626)
                      ..++. ++++++++.++++++|.| ..++..+..+-..+
T Consensus       155 ~~l~~~~~eel~~~~~~I~~~p~N-~SAW~~R~~ll~~l  192 (331)
T 3dss_A          155 AQAAVAPAEELAFTDSLITRNFSN-YSSWHYRSCLLPQL  192 (331)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHCSCC-HHHHHHHHHHHHHH
T ss_pred             HHhCcCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHh
Confidence            99999 699999999999999998 45666666554444

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.29  E-value=1.8e-06  Score=72.11  Aligned_cols=80  Identities=13%  Similarity=0.094  Sum_probs=65.1

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +..+...|..++..|+|++|+..|++++.    +.|.+           ..+|+++|.||.++|++++|+..+.+++++.
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~   71 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVE----TDPDY-----------VGTYYHLGKLYERLDRTDDAIDTYAQGIEVA   71 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            45677899999999999999999999999    56665           4589999999999999999999999999987


Q ss_pred             CC--CHHHHHHHHHHHH
Q 006908          478 PA--HVKGLYRRGMAYM  492 (626)
Q Consensus       478 p~--~~ka~~~~g~a~~  492 (626)
                      |.  +..+...+..++.
T Consensus        72 ~~~~~~~~~~~l~~~l~   88 (100)
T 3ma5_A           72 REEGTQKDLSELQDAKL   88 (100)
T ss_dssp             HHHSCHHHHHHHHHHHH
T ss_pred             hcCCchhHHHHHHHHHH
Confidence            63  3444444444443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.27  E-value=5.5e-06  Score=85.08  Aligned_cols=104  Identities=14%  Similarity=0.104  Sum_probs=89.6

Q ss_pred             hccccHH-HHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhC
Q 006908          409 FKEGKFE-LAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE----------CRKSIEACNKVLDAN  477 (626)
Q Consensus       409 f~~g~~~-~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~----------~~~A~~~~~~aL~~d  477 (626)
                      .+.|.|. +|+.++.++|.    ++|.+           .++|+.++.+...++.          +.+++..+..+|..+
T Consensus        40 ~~~~e~s~eaL~~t~~~L~----~nP~~-----------ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~  104 (331)
T 3dss_A           40 RQAGELDESVLELTSQILG----ANPDF-----------ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN  104 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHT----TCTTC-----------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHcCCCCHHHHHHHHHHHH----HCchh-----------HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence            3566665 79999999999    78877           6789999999988876          789999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006908          478 PAHVKGLYRRGMAYMALGE--FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (626)
Q Consensus       478 p~~~ka~~~~g~a~~~lg~--~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~  528 (626)
                      |.|..+|+.|+.++..++.  ++++++.+.++++++|.| -.++.....+-..
T Consensus       105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprN-y~AW~~R~~vl~~  156 (331)
T 3dss_A          105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN-FHCWDYRRFVAAQ  156 (331)
T ss_dssp             TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Confidence            9999999999999999994  999999999999999998 4666666555443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.25  E-value=1.5e-06  Score=94.45  Aligned_cols=109  Identities=11%  Similarity=0.071  Sum_probs=93.2

Q ss_pred             HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (626)
Q Consensus       395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL  474 (626)
                      ...+..+.+.|..+..+|+|++|+.+|+++|.......+.+       +...+..++|||.+|..+|+|++|+..+.+||
T Consensus       348 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-------Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al  420 (490)
T 3n71_A          348 LYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN-------NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY  420 (490)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            45688888999999999999999999999999776554444       34567899999999999999999999999999


Q ss_pred             HhC-----CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908          475 DAN-----PAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (626)
Q Consensus       475 ~~d-----p~~---~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l  510 (626)
                      ++-     |++   ++.+-.+++++..++.|.+|...|++|.+-
T Consensus       421 ~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          421 AILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            763     554   567788999999999999999999988653

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.20  E-value=1e-05  Score=72.11  Aligned_cols=89  Identities=11%  Similarity=-0.031  Sum_probs=79.0

Q ss_pred             hhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC
Q 006908          404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK----LGECRKSIEACNKVLDANPA  479 (626)
Q Consensus       404 ~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~k----l~~~~~A~~~~~~aL~~dp~  479 (626)
                      .|..++..+.+++|+.+|++|...      .+           ..+++|+|.+|..    .+++.+|+..+.+|.+.  .
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~------g~-----------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g   91 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL------NS-----------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--N   91 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT------TC-----------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--T
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC------CC-----------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--C
Confidence            667777778888999999999982      12           4588999999999    89999999999999887  7


Q ss_pred             CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC
Q 006908          480 HVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVD  511 (626)
Q Consensus       480 ~~ka~~~~g~a~~~----lg~~~eA~~~~~kAl~l~  511 (626)
                      ++.|++++|.+|..    .+++++|+.+|++|.++.
T Consensus        92 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           92 DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            89999999999999    999999999999999985

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.18  E-value=1.4e-05  Score=82.95  Aligned_cols=108  Identities=16%  Similarity=0.075  Sum_probs=86.6

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~  476 (626)
                      .+..+...|..++..|+|+.|...|.+++.......  +       ......+++++|.++..+|+|.+|+..+.+++.+
T Consensus        52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~-------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~  122 (373)
T 1hz4_A           52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD--V-------WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL  122 (373)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--C-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC--c-------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            455677888899999999999999999998543321  1       1123456889999999999999999999999887


Q ss_pred             C--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908          477 N--------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (626)
Q Consensus       477 d--------p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~  513 (626)
                      .        |....+++++|.++..+|++++|...|++++.+.+.
T Consensus       123 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  167 (373)
T 1hz4_A          123 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS  167 (373)
T ss_dssp             HHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred             HHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence            5        334667888999999999999999999999998765

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.17  E-value=1.5e-05  Score=69.14  Aligned_cols=102  Identities=12%  Similarity=0.153  Sum_probs=80.2

Q ss_pred             cHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-C-CCHHHHHHH
Q 006908          413 KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRK---SIEACNKVLDAN-P-AHVKGLYRR  487 (626)
Q Consensus       413 ~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~---A~~~~~~aL~~d-p-~~~ka~~~~  487 (626)
                      ....+...|.+++.    ..+..           ..+.+|+|.|+.+..+...   ++..+..++.-+ | ..-.++|.+
T Consensus        16 ~l~~~~~~y~~e~~----~~~~s-----------~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~L   80 (126)
T 1nzn_A           16 DLLKFEKKFQSEKA----AGSVS-----------KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYL   80 (126)
T ss_dssp             HHHHHHHHHHHHHH----HSCCC-----------HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc----cCCCc-----------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence            34566667777765    22222           4578899999999887666   999999988877 5 567899999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006908          488 GMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (626)
Q Consensus       488 g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~  530 (626)
                      |.+++++|+|+.|+.+++.+|+++|+| ..+......++.++.
T Consensus        81 Avg~yklg~Y~~A~~~~~~lL~~eP~n-~QA~~Lk~~i~~~i~  122 (126)
T 1nzn_A           81 AVGNYRLKEYEKALKYVRGLLQTEPQN-NQAKELERLIDKAMK  122 (126)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHH
Confidence            999999999999999999999999998 567766666655443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.13  E-value=1.1e-05  Score=83.18  Aligned_cols=110  Identities=13%  Similarity=-0.015  Sum_probs=96.1

Q ss_pred             HHHhhhchhhccc-cHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHh
Q 006908          400 KIRVTGNRLFKEG-KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL-G-ECRKSIEACNKVLDA  476 (626)
Q Consensus       400 ~~k~~Gn~~f~~g-~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl-~-~~~~A~~~~~~aL~~  476 (626)
                      .+..++..+...+ .+++|+..+.++|.    .+|.+           ..+|++++.|+.++ + ++.+++..|.++|++
T Consensus        90 aWn~R~~iL~~l~~~l~eEL~~~~~~L~----~nPKn-----------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~  154 (349)
T 3q7a_A           90 VWQYRFSLLTSLNKSLEDELRLMNEFAV----QNLKS-----------YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP  154 (349)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHH----TTCCC-----------HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Confidence            4455666676677 59999999999998    78877           56999999999998 8 999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006908          477 NPAHVKGLYRRGMAYMALGEFE--------EAQRDFEMMMKVDKSSEPDATAALSKL  525 (626)
Q Consensus       477 dp~~~ka~~~~g~a~~~lg~~~--------eA~~~~~kAl~l~P~~~~~~~~~l~~l  525 (626)
                      +|.|..||+.|+.++..++.++        ++++.+.++++++|.|. .++.....+
T Consensus       155 dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~-SAW~~R~~l  210 (349)
T 3q7a_A          155 DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNN-SAWGWRWYL  210 (349)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCH-HHHHHHHHH
Confidence            9999999999999999999988        99999999999999984 565555544

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.12  E-value=6.8e-06  Score=70.03  Aligned_cols=81  Identities=12%  Similarity=0.060  Sum_probs=65.6

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +..+...|..++..|+|++|+..|++++.    +.|.+           ..+++++|.|+.++|++.+|+..+.+++.++
T Consensus        19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~   83 (115)
T 2kat_A           19 MLLRFTLGKTYAEHEQFDAALPHLRAALD----FDPTY-----------SVAWKWLGKTLQGQGDRAGARQAWESGLAAA   83 (115)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHH----HCCCc-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            34677899999999999999999999999    56655           4588999999999999999999999999998


Q ss_pred             CC--CHHHHHHHHHHHHH
Q 006908          478 PA--HVKGLYRRGMAYMA  493 (626)
Q Consensus       478 p~--~~ka~~~~g~a~~~  493 (626)
                      |.  +..++..+..++..
T Consensus        84 ~~~~~~~~~~~l~~~l~~  101 (115)
T 2kat_A           84 QSRGDQQVVKELQVFLRR  101 (115)
T ss_dssp             HHHTCHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHH
Confidence            74  34444444444433

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.10  E-value=1.7e-05  Score=82.40  Aligned_cols=107  Identities=13%  Similarity=0.119  Sum_probs=88.9

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +..+...|..++..|+|.+|+..|++++..........       ......++.|+|.++..+|++++|+..+.+++.+.
T Consensus        93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  165 (373)
T 1hz4_A           93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ-------LPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL  165 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTT-------STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc-------CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            34466789999999999999999999998654332110       01235678999999999999999999999999987


Q ss_pred             CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006908          478 PA-----HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (626)
Q Consensus       478 p~-----~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~  511 (626)
                      +.     ...+++.+|.++...|++++|+..|++++.+.
T Consensus       166 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~  204 (373)
T 1hz4_A          166 SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLL  204 (373)
T ss_dssp             TTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             hccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            75     35789999999999999999999999999874

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.09  E-value=6.5e-06  Score=82.37  Aligned_cols=130  Identities=12%  Similarity=0.029  Sum_probs=95.3

Q ss_pred             HhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-
Q 006908          402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH-  480 (626)
Q Consensus       402 k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~-  480 (626)
                      ...+..+...|+|++|...|..++.    ..|.+           . .++++|.+++++++|.+|+..+..++...+.. 
T Consensus       106 LayA~~L~~~g~y~eA~~~l~~~~~----~~p~~-----------~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~  169 (282)
T 4f3v_A          106 MGFAACEAAQGNYADAMEALEAAPV----AGSEH-----------L-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFL  169 (282)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHTSSCC----TTCHH-----------H-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHh----cCCch-----------H-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCccc
Confidence            3456777788899999999987665    33322           3 77899999999999999999999887753221 


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCC
Q 006908          481 -VKGLYRRGMAYMALGEFEEAQRDFEMMMKVD--KSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKP  548 (626)
Q Consensus       481 -~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~--P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  548 (626)
                       ..++|++|.++..+|++++|+.+|++++...  |....++...+..+...+.+..+ -+..++++....+
T Consensus       170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~de-A~~~l~~a~a~~P  239 (282)
T 4f3v_A          170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESA-AVALLEWLQTTHP  239 (282)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHH-HHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcCC
Confidence             4589999999999999999999999999654  55335566666666555554333 2345555555443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.00  E-value=2.5e-05  Score=85.67  Aligned_cols=112  Identities=13%  Similarity=0.087  Sum_probs=81.2

Q ss_pred             HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006908          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (626)
Q Consensus       400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~  479 (626)
                      .+...|..+.+.|++++|...|++++.    +.|.+.          ..+|++++.++.++|++++|+..+.+|++..|.
T Consensus       323 l~~~~~~~~~~~g~~~~A~~~~~~al~----~~p~~~----------~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~  388 (530)
T 2ooe_A          323 LYFAYADYEESRMKYEKVHSIYNRLLA----IEDIDP----------TLVYIQYMKFARRAEGIKSGRMIFKKAREDART  388 (530)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH----SSSSCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhC----ccccCc----------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence            445566777788999999999999998    555542          136777787777788888888888888887777


Q ss_pred             CHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908          480 HVKGLYRRGMA-YMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (626)
Q Consensus       480 ~~ka~~~~g~a-~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~  526 (626)
                      +...++..+.. +..+|++++|+..|++|++++|++ ..+...+..+.
T Consensus       389 ~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~-~~~~~~~~~~~  435 (530)
T 2ooe_A          389 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI-PEYVLAYIDYL  435 (530)
T ss_dssp             CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCC-HHHHHHHHHHH
Confidence            77766665554 335788888888888888888876 45555555544

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=97.92  E-value=5e-05  Score=82.42  Aligned_cols=77  Identities=14%  Similarity=0.144  Sum_probs=65.6

Q ss_pred             hHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCC---CH
Q 006908          447 NLLHLNVAACLLK----LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVDKS---SE  515 (626)
Q Consensus       447 ~~~~~Nla~~~~k----l~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~----lg~~~eA~~~~~kAl~l~P~---~~  515 (626)
                      ..+++|+|.+|..    .+++.+|+..+.++++.  .++.+++++|.+|..    .+++++|+.+|++|++.+|+   + 
T Consensus       363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~-  439 (490)
T 2xm6_A          363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGT-  439 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHH-
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCC-
Confidence            4588999999999    89999999999999886  479999999999999    89999999999999999854   4 


Q ss_pred             HHHHHHHHHHH
Q 006908          516 PDATAALSKLK  526 (626)
Q Consensus       516 ~~~~~~l~~l~  526 (626)
                      ..+...|..+.
T Consensus       440 ~~a~~~l~~~~  450 (490)
T 2xm6_A          440 ENRNITEKKLT  450 (490)
T ss_dssp             HHHHHHHTTSC
T ss_pred             HHHHHHHHhcC
Confidence            45666665553

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=97.90  E-value=9.5e-05  Score=81.03  Aligned_cols=115  Identities=11%  Similarity=0.137  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hCCC
Q 006908          415 ELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK-------LGECR-------KSIEACNKVLD-ANPA  479 (626)
Q Consensus       415 ~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~k-------l~~~~-------~A~~~~~~aL~-~dp~  479 (626)
                      .+|+..|++|+.    ..|.+           ..+|+++|..+.+       +|++.       +|+..+.+|++ ++|+
T Consensus       255 ~~a~~~y~~al~----~~p~~-----------~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~  319 (530)
T 2ooe_A          255 KRVMFAYEQCLL----VLGHH-----------PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK  319 (530)
T ss_dssp             HHHHHHHHHHHH----HHTTC-----------HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS
T ss_pred             HHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc
Confidence            478889999998    44554           4588899998886       79987       89999999997 8999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Q 006908          480 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFD  545 (626)
Q Consensus       480 ~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  545 (626)
                      +..+|+.+|..+..+|++++|+..|++|++++|.+...+...+..+........+ .+..|.+...
T Consensus       320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~-A~~~~~~Al~  384 (530)
T 2ooe_A          320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKS-GRMIFKKARE  384 (530)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHH-HHHHHHHHHh
Confidence            9999999999999999999999999999999998733456665555444333322 3345544443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.85  E-value=0.00018  Score=62.55  Aligned_cols=83  Identities=18%  Similarity=0.239  Sum_probs=69.5

Q ss_pred             hHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 006908          447 NLLHLNVAACLLKLGE---CRKSIEACNKVLDANPA-HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAAL  522 (626)
Q Consensus       447 ~~~~~Nla~~~~kl~~---~~~A~~~~~~aL~~dp~-~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l  522 (626)
                      ....+|.|.|+.+..+   ..+++..+...+..+|. .-..+|.+|.++.++|+|+.|+.+.+.+|+++|+| ..+....
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N-~QA~~Lk  118 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN-KQVGALK  118 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC-HHHHHHH
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC-HHHHHHH
Confidence            4577889999988875   56789999999998884 57899999999999999999999999999999999 5666666


Q ss_pred             HHHHHHHH
Q 006908          523 SKLKKQRQ  530 (626)
Q Consensus       523 ~~l~~~~~  530 (626)
                      ..++.++.
T Consensus       119 ~~Ie~ki~  126 (134)
T 3o48_A          119 SMVEDKIQ  126 (134)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66655554

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.82  E-value=0.00015  Score=74.83  Aligned_cols=65  Identities=18%  Similarity=0.132  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      +|.-+|.+++..|+++.|+..+++|+.++| ++-+|..+|.++...|++++|++.|.+|+.++|..
T Consensus       279 ~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~  343 (372)
T 3ly7_A          279 IYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA  343 (372)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            455577778888999999999999999997 57899999999999999999999999999999985

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.78  E-value=9e-05  Score=87.73  Aligned_cols=107  Identities=22%  Similarity=0.309  Sum_probs=85.4

Q ss_pred             HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Q 006908          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP-  478 (626)
Q Consensus       400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp-  478 (626)
                      .+...|+.++..|+|++|+.+|.+|-                       .|..+|.|+.++|+|+.|++++.+|...++ 
T Consensus      1197 d~~~iGd~le~eg~YeeA~~~Y~kA~-----------------------ny~rLA~tLvkLge~q~AIEaarKA~n~~aW 1253 (1630)
T 1xi4_A         1197 HIQQVGDRCYDEKMYDAAKLLYNNVS-----------------------NFGRLASTLVHLGEYQAAVDGARKANSTRTW 1253 (1630)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhhh-----------------------HHHHHHHHHHHhCCHHHHHHHHHHhCCHHHH
Confidence            45579999999999999999999863                       477799999999999999999998843332 


Q ss_pred             ------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006908          479 ------------------------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (626)
Q Consensus       479 ------------------------~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~  530 (626)
                                              .++..+..++..|...|.|++|+..|++||.++|.+ .....+|..+..+.+
T Consensus      1254 kev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH-~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A         1254 KEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAH-MGMFTELAILYSKFK 1328 (1630)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhH-hHHHHHHHHHHHhCC
Confidence                                    134455677778888999999999999999999886 567767777665544

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.76  E-value=0.0003  Score=61.84  Aligned_cols=82  Identities=17%  Similarity=0.231  Sum_probs=68.1

Q ss_pred             hHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 006908          447 NLLHLNVAACLLKLGE---CRKSIEACNKVLDANPA-HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAAL  522 (626)
Q Consensus       447 ~~~~~Nla~~~~kl~~---~~~A~~~~~~aL~~dp~-~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l  522 (626)
                      ....+|.|.|+.+..+   -.+++..++..+.-.|. .-.++|.+|.+++++|+|++|+.+++.+|+++|+| ..+..+.
T Consensus        39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n-~QA~~Lk  117 (144)
T 1y8m_A           39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN-KQVGALK  117 (144)
T ss_dssp             HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC-HHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc-HHHHHHH
Confidence            3477889999999875   45789999999998884 56899999999999999999999999999999998 5566655


Q ss_pred             HHHHHHH
Q 006908          523 SKLKKQR  529 (626)
Q Consensus       523 ~~l~~~~  529 (626)
                      ..++.++
T Consensus       118 ~~Ie~~i  124 (144)
T 1y8m_A          118 SMVEDKI  124 (144)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.74  E-value=0.00028  Score=62.50  Aligned_cols=94  Identities=13%  Similarity=0.059  Sum_probs=78.9

Q ss_pred             cccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006908          411 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA  490 (626)
Q Consensus       411 ~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a  490 (626)
                      .+++++|+..|++|.+    ....             ...  +|.+|.....+.+|+..+.++.+.  .++.|++++|.+
T Consensus         8 ~~d~~~A~~~~~~aa~----~g~~-------------~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~   66 (138)
T 1klx_A            8 KKDLKKAIQYYVKACE----LNEM-------------FGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDF   66 (138)
T ss_dssp             HHHHHHHHHHHHHHHH----TTCT-------------THH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHc----CCCH-------------hhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence            3589999999999998    3221             123  999999999999999999999987  789999999999


Q ss_pred             HHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006908          491 YMA----LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (626)
Q Consensus       491 ~~~----lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~  528 (626)
                      |..    .+++++|+.+|++|.+..  + ..+...|..+...
T Consensus        67 y~~G~g~~~d~~~A~~~~~~Aa~~g--~-~~a~~~Lg~~y~~  105 (138)
T 1klx_A           67 YENGKYVKKDLRKAAQYYSKACGLN--D-QDGCLILGYKQYA  105 (138)
T ss_dssp             HHHCSSSCCCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHH
T ss_pred             HHcCCCCCccHHHHHHHHHHHHcCC--C-HHHHHHHHHHHHC
Confidence            999    899999999999999973  3 5677777776544

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.74  E-value=6.7e-05  Score=79.49  Aligned_cols=106  Identities=23%  Similarity=0.308  Sum_probs=63.7

Q ss_pred             HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Q 006908          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP-  478 (626)
Q Consensus       400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp-  478 (626)
                      .+...|+.++..|+|++|+.+|.++                       .-|.++|.|+.++|+|.+|++.+.++.  +| 
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a-----------------------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~  178 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV-----------------------SNFGRLASTLVHLGEYQAAVDGARKAN--STR  178 (449)
T ss_dssp             -------------CTTTHHHHHHHT-----------------------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh-----------------------hhHHHHHHHHHHhccHHHHHHHHHHcC--Cch
Confidence            5556666666677777777666654                       135556666666666666666666661  11 


Q ss_pred             --------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 006908          479 --------------------------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQE  531 (626)
Q Consensus       479 --------------------------~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~  531 (626)
                                                .++.-+..+...|.+.|+|++|+..|+++|.+++.+ -.+...|..+..+.+.
T Consensus       179 ~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah-~~~ftel~il~~ky~p  256 (449)
T 1b89_A          179 TWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAH-MGMFTELAILYSKFKP  256 (449)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC-HHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHH-HHHHHHHHHHHHhcCH
Confidence                                      222333445578889999999999999999999988 5688888877665543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.72  E-value=0.00015  Score=78.01  Aligned_cols=115  Identities=13%  Similarity=0.074  Sum_probs=65.8

Q ss_pred             HHHhhhchhhccc---cHHHHHHHHHHHHHhcccCCCCChh--------------------HH-----HHHhhhhhHHHH
Q 006908          400 KIRVTGNRLFKEG---KFELAKAKYEKVLRDFNHVNPQDDE--------------------EG-----KVFVGKRNLLHL  451 (626)
Q Consensus       400 ~~k~~Gn~~f~~g---~~~~A~~~y~~al~~l~~~~p~~~e--------------------e~-----~~~~~~~~~~~~  451 (626)
                      .+...|..+++.|   ++.+|+..|++++.    ..+....                    +-     ... .-...+++
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~----~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~~a~~  252 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVS----RGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGYPASWV  252 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----TTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGSTHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCHHHHH
Confidence            4456777888888   99999999999987    3333211                    00     001 12234555


Q ss_pred             HHHHH-H--HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 006908          452 NVAAC-L--LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG-----EFEEAQRDFEMMMKVDKSSEPDATAALS  523 (626)
Q Consensus       452 Nla~~-~--~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg-----~~~eA~~~~~kAl~l~P~~~~~~~~~l~  523 (626)
                      |+|.+ +  ...+++.+|+..+.++++.  .++.|++++|.+|. .|     ++++|+.+|++|.   |.+ ..+...|.
T Consensus       253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~-~~A~~~Lg  325 (452)
T 3e4b_A          253 SLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GRE-VAADYYLG  325 (452)
T ss_dssp             HHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTC-HHHHHHHH
T ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCC-HHHHHHHH
Confidence            56655 2  3455666666666665543  35666666666665 33     6666666666665   444 44555555


Q ss_pred             HHH
Q 006908          524 KLK  526 (626)
Q Consensus       524 ~l~  526 (626)
                      .+.
T Consensus       326 ~~y  328 (452)
T 3e4b_A          326 QIY  328 (452)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A

Probab=97.67  E-value=0.00011  Score=78.31  Aligned_cols=76  Identities=13%  Similarity=0.159  Sum_probs=64.0

Q ss_pred             CCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCCCcEEEEEeeccccccCCCCCCCC
Q 006908           45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA  124 (626)
Q Consensus        45 p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge~~~~~ip~~~~~g~~~~~~~~  124 (626)
                      ++.||.|+++|+++ .||..|+++.      +.++.+.+|.+.  + |+++|.||++|+.++|.+..             
T Consensus       155 a~~gD~V~id~~~~-~dG~~~~~~~------~~~~~l~~g~~~--~-fe~~liG~k~Ge~~~~~vtF-------------  211 (433)
T 3gty_X          155 AEAGDLVRVNMEVY-NEEGKKLTSR------EYEYVISEDEDR--P-FVKDLVGKKKGDVVEIEREY-------------  211 (433)
T ss_dssp             CCTTSEEEEEEEEE-CTTSCEEEEE------EEEEECCSSCCC--T-THHHHTTCCTTCEEEEEEEE-------------
T ss_pred             cCCCCEEEEEEEEE-ECCEECcCCC------CCCeEEEecCCc--h-HHHHhCCCCCCceEEEEEee-------------
Confidence            67899999999998 6999999764      357888898887  4 99999999999999998843             


Q ss_pred             CCCCCCCceEEEEEEeeeeccccc
Q 006908          125 PSTFPKDEELHFEIEMIDFAKAKI  148 (626)
Q Consensus       125 ~~~i~~~~~lv~~v~l~~~~~~~~  148 (626)
                           +|.+.+|.|+|.++.....
T Consensus       212 -----aGk~a~F~VtV~~Ik~~~l  230 (433)
T 3gty_X          212 -----EGKKYTYKLEVEEVYKRTL  230 (433)
T ss_dssp             -----TTEEEEEEEEEEEEEEECC
T ss_pred             -----CCCeEEEEEEEEEEEEecC
Confidence                 2689999999999975443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=97.64  E-value=0.00045  Score=74.75  Aligned_cols=92  Identities=14%  Similarity=0.103  Sum_probs=45.4

Q ss_pred             HHHhhhchhhc----cccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHH----cCCHHHHHHHHH
Q 006908          400 KIRVTGNRLFK----EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK----LGECRKSIEACN  471 (626)
Q Consensus       400 ~~k~~Gn~~f~----~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~k----l~~~~~A~~~~~  471 (626)
                      .+...|..++.    .+++++|+.+|++|+..    .  +           ..+++++|.+|..    .+++.+|+..+.
T Consensus        77 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~--~-----------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~  139 (490)
T 2xm6_A           77 AEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK----G--L-----------PQAQQNLGVMYHEGNGVKVDKAESVKWFR  139 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T--C-----------HHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----C--C-----------HHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            44455666665    66677777777776651    0  1           1234444444444    444444444444


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Q 006908          472 KVLDANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKV  510 (626)
Q Consensus       472 ~aL~~dp~~~ka~~~~g~a~~~----lg~~~eA~~~~~kAl~l  510 (626)
                      ++++.  .++.+++++|.+|..    .+++++|+.+|++|++.
T Consensus       140 ~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~  180 (490)
T 2xm6_A          140 LAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ  180 (490)
T ss_dssp             HHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence            44432  244444444444444    44444444444444443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.64  E-value=0.00016  Score=71.87  Aligned_cols=89  Identities=11%  Similarity=0.052  Sum_probs=76.4

Q ss_pred             ccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCC-HHHHH
Q 006908          412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL-----GECRKSIEACNKVLDANPAH-VKGLY  485 (626)
Q Consensus       412 g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl-----~~~~~A~~~~~~aL~~dp~~-~ka~~  485 (626)
                      +....|....++|+.    +.|..         +...+|.-+|..|.+.     |+.++|..++++||+++|+. +.+++
T Consensus       177 ~~l~~A~a~lerAle----LDP~~---------~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v  243 (301)
T 3u64_A          177 DTVHAAVMMLERACD----LWPSY---------QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHI  243 (301)
T ss_dssp             HHHHHHHHHHHHHHH----HCTTH---------HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHH
T ss_pred             HhHHHHHHHHHHHHH----hCCCc---------ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHH
Confidence            356777888888887    55542         1256899999999996     99999999999999999975 99999


Q ss_pred             HHHHHHHHc-CCHHHHHHHHHHHHhcCCC
Q 006908          486 RRGMAYMAL-GEFEEAQRDFEMMMKVDKS  513 (626)
Q Consensus       486 ~~g~a~~~l-g~~~eA~~~~~kAl~l~P~  513 (626)
                      ..|..++.. +++++|.+.|++|+..+|.
T Consensus       244 ~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          244 TYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            999999885 9999999999999999776

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.63  E-value=0.00026  Score=63.52  Aligned_cols=79  Identities=11%  Similarity=0.094  Sum_probs=63.8

Q ss_pred             HHHHHhhhchhhccc---cHHHHHHHHHHHHHhcccCC-CCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006908          398 AEKIRVTGNRLFKEG---KFELAKAKYEKVLRDFNHVN-PQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV  473 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g---~~~~A~~~y~~al~~l~~~~-p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~a  473 (626)
                      .+..++.|..+.+.+   ++.+|+..++..++.    . |.          ....+++|+|.+|+++++|.+|+.+|+++
T Consensus        32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~----~~p~----------~~rd~lY~LAv~~~kl~~Y~~A~~y~~~l   97 (152)
T 1pc2_A           32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK----GSKE----------EQRDYVFYLAVGNYRLKEYEKALKYVRGL   97 (152)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH----SCHH----------HHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc----CCcc----------chHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            355667888888877   788999999999882    2 21          12458999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHH
Q 006908          474 LDANPAHVKGLYRRGMA  490 (626)
Q Consensus       474 L~~dp~~~ka~~~~g~a  490 (626)
                      |+++|+|..|..-+-.+
T Consensus        98 L~ieP~n~QA~~Lk~~i  114 (152)
T 1pc2_A           98 LQTEPQNNQAKELERLI  114 (152)
T ss_dssp             HHHCTTCHHHHHHHHHH
T ss_pred             HhcCCCCHHHHHHHHHH
Confidence            99999998887655443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.62  E-value=0.0002  Score=84.83  Aligned_cols=106  Identities=18%  Similarity=0.143  Sum_probs=81.1

Q ss_pred             hhhchhhccccHHHHHHHHHHHHHhcccC-----CCCChhHHHHH--hhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006908          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHV-----NPQDDEEGKVF--VGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (626)
Q Consensus       403 ~~Gn~~f~~g~~~~A~~~y~~al~~l~~~-----~p~~~ee~~~~--~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~  475 (626)
                      +.|..+...|.|++|..+|+++.......     .-.+-+....+  +-....+|+++|.++..+|+|.+|+.+|.+|  
T Consensus      1054 eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-- 1131 (1630)
T 1xi4_A         1054 DIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-- 1131 (1630)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc--
Confidence            45889999999999999999864311100     00000000000  1122468999999999999999999999887  


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (626)
Q Consensus       476 ~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~  513 (626)
                         +++.+|++.|.++..+|+|++|+++|.+|.+.+++
T Consensus      1132 ---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A         1132 ---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred             ---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence               89999999999999999999999999999998865

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.54  E-value=0.00044  Score=72.94  Aligned_cols=118  Identities=12%  Similarity=0.106  Sum_probs=86.6

Q ss_pred             HHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccC------------------CCCChhHHHH-------------H
Q 006908          394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV------------------NPQDDEEGKV-------------F  442 (626)
Q Consensus       394 ~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~------------------~p~~~ee~~~-------------~  442 (626)
                      .-.....+.+.|..+++.|+|++|+..|.+++.....+                  .+.+.+....             .
T Consensus        51 ~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  130 (434)
T 4b4t_Q           51 RNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKR  130 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSC
T ss_pred             hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCc
Confidence            33445566777888888888888888887776543322                  1122111100             0


Q ss_pred             hhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006908          443 VGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (626)
Q Consensus       443 ~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d------p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~  511 (626)
                      ..+.+.++.++|.+|..+|+|.+|+..+.+++...      +..+.++..+|++|..+|+|++|+..|++|+.+.
T Consensus       131 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  205 (434)
T 4b4t_Q          131 VFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAA  205 (434)
T ss_dssp             CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence            12346789999999999999999999999998762      3347799999999999999999999999999874

>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A

Probab=97.53  E-value=0.00021  Score=76.18  Aligned_cols=74  Identities=9%  Similarity=0.081  Sum_probs=63.0

Q ss_pred             CCCCCCeEEEEEEEEeCCCcEEEecCCCccEEEEcCCCCccchHHHhhccCCCCcEEEEEEeCCccCCCCCCCCCCCcce
Q 006908          168 TPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEE  247 (626)
Q Consensus       168 ~~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~ip~~~~  247 (626)
                      .+..||.|+++|+++ .||..|+++. +.++.+.+|.|.  + |+.+|.||++|++++|.+.    |         ++.+
T Consensus       154 ~a~~gD~V~id~~~~-~dG~~~~~~~-~~~~~l~~g~~~--~-fe~~liG~k~Ge~~~~~vt----F---------aGk~  215 (433)
T 3gty_X          154 PAEAGDLVRVNMEVY-NEEGKKLTSR-EYEYVISEDEDR--P-FVKDLVGKKKGDVVEIERE----Y---------EGKK  215 (433)
T ss_dssp             CCCTTSEEEEEEEEE-CTTSCEEEEE-EEEEECCSSCCC--T-THHHHTTCCTTCEEEEEEE----E---------TTEE
T ss_pred             ccCCCCEEEEEEEEE-ECCEECcCCC-CCCeEEEecCCc--h-HHHHhCCCCCCceEEEEEe----e---------CCCe
Confidence            467899999999985 7999998654 378888999887  4 9999999999999999983    2         4689


Q ss_pred             EEEEEEEeeEEe
Q 006908          248 VHFEVELVHLIQ  259 (626)
Q Consensus       248 l~~~v~l~~~~~  259 (626)
                      ..|.|+|+++..
T Consensus       216 a~F~VtV~~Ik~  227 (433)
T 3gty_X          216 YTYKLEVEEVYK  227 (433)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             EEEEEEEEEEEE
Confidence            999999999854

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.51  E-value=0.00079  Score=60.89  Aligned_cols=117  Identities=15%  Similarity=0.156  Sum_probs=84.0

Q ss_pred             HHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Q 006908          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN---  477 (626)
Q Consensus       401 ~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d---  477 (626)
                      ++++...++..+.|+.|+-.+..++..... +++-     ..-.....++..+|.+++..++|.+|...|.+||.+.   
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~-~~~~-----~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l   96 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNN-NPEL-----FSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKAL   96 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-STTS-----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcC-Cccc-----ccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH
Confidence            456677788899999999999998885432 1110     0012346688889999999999999999999998653   


Q ss_pred             CCC----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006908          478 PAH----------------------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (626)
Q Consensus       478 p~~----------------------~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l  525 (626)
                      +.+                      ....|+.+.||.+++++++|+..++..-.-.- . +.+.-.|+++
T Consensus        97 ~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~R-t-~kvnm~LakL  164 (167)
T 3ffl_A           97 SKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQR-T-PKINMLLANL  164 (167)
T ss_dssp             --------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGC-C-HHHHHHHHHH
T ss_pred             hcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhc-C-HHHHHHHHHH
Confidence            111                      25779999999999999999998875322211 1 4455556554

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.50  E-value=0.00011  Score=78.51  Aligned_cols=95  Identities=11%  Similarity=0.043  Sum_probs=77.0

Q ss_pred             hHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006908          393 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK  472 (626)
Q Consensus       393 e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~  472 (626)
                      +-...+..+.+.|..+..+|+|++|+.+|+++|..+....+.+       +...+..++|+|.+|..+|+|++|+..+.+
T Consensus       324 ~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~-------Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~  396 (429)
T 3qwp_A          324 INIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS-------HPVRGVQVMKVGKLQLHQGMFPQAMKNLRL  396 (429)
T ss_dssp             TSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC-------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            3456788899999999999999999999999999877655544       445678999999999999999999999999


Q ss_pred             HHHhC-----CCC---HHHHHHHHHHHHHc
Q 006908          473 VLDAN-----PAH---VKGLYRRGMAYMAL  494 (626)
Q Consensus       473 aL~~d-----p~~---~ka~~~~g~a~~~l  494 (626)
                      |+++-     |++   ..++.+++.++..+
T Consensus       397 Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          397 AFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            99763     555   34556666666544

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.45  E-value=0.00072  Score=72.62  Aligned_cols=91  Identities=11%  Similarity=0.017  Sum_probs=62.7

Q ss_pred             HHHhhhch-h--hccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcC-----CHHHHHHHHH
Q 006908          400 KIRVTGNR-L--FKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-----ECRKSIEACN  471 (626)
Q Consensus       400 ~~k~~Gn~-~--f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~-----~~~~A~~~~~  471 (626)
                      .+...|.. +  ...+++.+|+.+|++|+.    ..  +           ..+++|+|.+|. .|     ++.+|+..+.
T Consensus       250 a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~----~g--~-----------~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~  311 (452)
T 3e4b_A          250 SWVSLAQLLYDFPELGDVEQMMKYLDNGRA----AD--Q-----------PRAELLLGKLYY-EGKWVPADAKAAEAHFE  311 (452)
T ss_dssp             HHHHHHHHHHHSGGGCCHHHHHHHHHHHHH----TT--C-----------HHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----CC--C-----------HHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence            33445554 3  457788888888888876    11  1           346777777776 44     7778888777


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC
Q 006908          472 KVLDANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVD  511 (626)
Q Consensus       472 ~aL~~dp~~~ka~~~~g~a~~~----lg~~~eA~~~~~kAl~l~  511 (626)
                      ++.   +.++.|++++|.+|..    ..++++|+.+|++|.+..
T Consensus       312 ~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  352 (452)
T 3e4b_A          312 KAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG  352 (452)
T ss_dssp             TTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred             HHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence            777   6777777887777766    347777777777777653

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.45  E-value=0.00037  Score=73.52  Aligned_cols=104  Identities=13%  Similarity=0.080  Sum_probs=86.6

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +..+...|..++..|+|.+|+..+++++..+......         ...+.++++++.+|..+++|.+|...+.+++.+.
T Consensus       135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  205 (434)
T 4b4t_Q          135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK---------PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAA  205 (434)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS---------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc---------hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence            5566788999999999999999999999866544322         2346789999999999999999999999999774


Q ss_pred             C---CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908          478 P---AH----VKGLYRRGMAYMALGEFEEAQRDFEMMMKV  510 (626)
Q Consensus       478 p---~~----~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l  510 (626)
                      +   ..    ...+...|..+...++|++|..+|.++++.
T Consensus       206 ~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~  245 (434)
T 4b4t_Q          206 NSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES  245 (434)
T ss_dssp             HHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred             hcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            3   22    456778899999999999999999999875

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.40  E-value=0.00023  Score=75.97  Aligned_cols=75  Identities=11%  Similarity=0.032  Sum_probs=65.2

Q ss_pred             HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (626)
Q Consensus       395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL  474 (626)
                      ...+..+.+.|..|..+|+|++|+.+|+++|.......+.+       +...+..++|+|.+|..+|+|++|+..+.+||
T Consensus       337 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-------Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al  409 (433)
T 3qww_A          337 VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY-------SLNVASMWLKLGRLYMGLENKAAGEKALKKAI  409 (433)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC-------ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            45677888999999999999999999999999876655444       34567889999999999999999999999999


Q ss_pred             Hh
Q 006908          475 DA  476 (626)
Q Consensus       475 ~~  476 (626)
                      ++
T Consensus       410 ~i  411 (433)
T 3qww_A          410 AI  411 (433)
T ss_dssp             HH
T ss_pred             HH
Confidence            76

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.30  E-value=0.00087  Score=67.83  Aligned_cols=92  Identities=15%  Similarity=0.050  Sum_probs=74.0

Q ss_pred             hchhhccc--cHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Q 006908          405 GNRLFKEG--KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA------  476 (626)
Q Consensus       405 Gn~~f~~g--~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~------  476 (626)
                      |...+..|  ++..|...|+++..    ..|..         ....+++|   |++++|+|++|...+..+++.      
T Consensus       183 a~v~l~~g~~~~q~A~~~f~El~~----~~p~~---------~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~  246 (310)
T 3mv2_B          183 SYIKFATNKETATSNFYYYEELSQ----TFPTW---------KTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQ  246 (310)
T ss_dssp             HHHHHHHTCSTTTHHHHHHHHHHT----TSCSH---------HHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTT
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHH----hCCCc---------ccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccc
Confidence            43344444  89999999999877    33320         01234555   899999999999999988876      


Q ss_pred             ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          477 ----NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       477 ----dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                          +|+++.++.++..+...+|+  +|.+.+.++.+++|++
T Consensus       247 k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h  286 (310)
T 3mv2_B          247 KENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH  286 (310)
T ss_dssp             CHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred             cccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence                58999999999999999998  8999999999999998

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.12  E-value=0.0012  Score=54.32  Aligned_cols=68  Identities=16%  Similarity=0.173  Sum_probs=56.6

Q ss_pred             HHHHHhhhchhhcccc---HHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908          398 AEKIRVTGNRLFKEGK---FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~---~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL  474 (626)
                      +..+...|..++..++   ..+|...+++||.    +.|.+           ..+++.+|..+++.|+|.+|+.++.++|
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~----~dp~~-----------~rA~~~lg~~~~~~g~y~~Ai~~w~~~l   70 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ----LEPYN-----------EAALSLIANDHFISFRFQEAIDTWVLLL   70 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----HCcCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3455566777764444   7999999999999    77777           5688889999999999999999999999


Q ss_pred             HhCCCC
Q 006908          475 DANPAH  480 (626)
Q Consensus       475 ~~dp~~  480 (626)
                      +.+|.+
T Consensus        71 ~~~p~~   76 (93)
T 3bee_A           71 DSNDPN   76 (93)
T ss_dssp             TCCCTT
T ss_pred             hhCCCC
Confidence            999973

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.10  E-value=0.01  Score=62.23  Aligned_cols=127  Identities=16%  Similarity=0.159  Sum_probs=98.4

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccC-CCC---C---hhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHH
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV-NPQ---D---DEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEA  469 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~-~p~---~---~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~  469 (626)
                      ..+.+...|......++...|+..|.+|+..+..- .++   .   ..+...+......+...++.+++.+|++.+|+..
T Consensus       114 ~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~  193 (388)
T 2ff4_A          114 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE  193 (388)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            44555566666777889999999999999865321 111   1   1223446667777888899999999999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------cCCCCHHHHHHHHHHH
Q 006908          470 CNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK-------VDKSSEPDATAALSKL  525 (626)
Q Consensus       470 ~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~-------l~P~~~~~~~~~l~~l  525 (626)
                      +..++..+|-+-.+|..+-.||...|+..+|++.|+++-.       ++|.  +..+.....+
T Consensus       194 l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~--~~l~~l~~~i  254 (388)
T 2ff4_A          194 LEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG--PTLRALNERI  254 (388)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC--HHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHH
Confidence            9999999999999999999999999999999999988644       4776  4455544443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.85  E-value=0.0072  Score=60.00  Aligned_cols=62  Identities=18%  Similarity=0.233  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 006908          463 CRKSIEACNKVLDANPA--HVKGLYRRGMAYMAL-----GEFEEAQRDFEMMMKVDKSSEPDATAALSK  524 (626)
Q Consensus       463 ~~~A~~~~~~aL~~dp~--~~ka~~~~g~a~~~l-----g~~~eA~~~~~kAl~l~P~~~~~~~~~l~~  524 (626)
                      ...|....++|+++||+  +..||..+|..|..+     |+.+.|.+.|++||+++|+...++...+..
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~  247 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYAD  247 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHH
Confidence            67899999999999999  567999999999996     999999999999999999642455555444

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=96.82  E-value=0.0086  Score=60.49  Aligned_cols=100  Identities=7%  Similarity=-0.023  Sum_probs=77.8

Q ss_pred             HHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Q 006908          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA-  479 (626)
Q Consensus       401 ~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~-  479 (626)
                      +.-.|..++..|++++|++.+.+++.    ..|..         ....++.-++.+++++|+.+.|.+.+.+..+.+|+ 
T Consensus       103 ~~~la~i~~~~g~~eeAL~~l~~~i~----~~~~~---------~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~  169 (310)
T 3mv2_B          103 LYLLATAQAILGDLDKSLETCVEGID----NDEAE---------GTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDT  169 (310)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHT----SSCST---------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhc----cCCCc---------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence            34678888889999999999999987    33310         11347777899999999999999999999999883 


Q ss_pred             ---CHHHHHHHHHH--HHHcC--CHHHHHHHHHHHHhcCCC
Q 006908          480 ---HVKGLYRRGMA--YMALG--EFEEAQRDFEMMMKVDKS  513 (626)
Q Consensus       480 ---~~ka~~~~g~a--~~~lg--~~~eA~~~~~kAl~l~P~  513 (626)
                         +-..+..++.+  .+..|  ++.+|...|+++....|+
T Consensus       170 ~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~  210 (310)
T 3mv2_B          170 VSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT  210 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS
T ss_pred             cccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC
Confidence               23445566555  55556  899999999999888876

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.54  E-value=0.013  Score=50.66  Aligned_cols=43  Identities=14%  Similarity=0.160  Sum_probs=37.8

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006908          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGM  489 (626)
Q Consensus       447 ~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~  489 (626)
                      -.+++.+|.+++|+|+|.+|+.+|..+|+++|+|..|.-.+..
T Consensus        74 Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~  116 (126)
T 1nzn_A           74 RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERL  116 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            4588889999999999999999999999999999887655443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.29  E-value=0.023  Score=49.95  Aligned_cols=73  Identities=12%  Similarity=0.056  Sum_probs=51.3

Q ss_pred             hhhchhhccc---cHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006908          403 VTGNRLFKEG---KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (626)
Q Consensus       403 ~~Gn~~f~~g---~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~  479 (626)
                      +.|..+.+..   +-.+++.+++..++    ..|..          +-.|++.+|.+++|+++|.+|+.+|..+|+++|+
T Consensus        44 ~YAw~Lv~S~~~~di~~GI~LLe~l~~----~~~~~----------~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~  109 (144)
T 1y8m_A           44 NYAWGLIKSTDVNDERLGVKILTDIYK----EAESR----------RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN  109 (144)
T ss_dssp             HHHHHHHHSSSHHHHHHHHHHHHHHHH----HCCST----------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHh----cCccc----------hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence            3444444433   23456666666665    23322          2347888999999999999999999999999999


Q ss_pred             CHHHHHHHHH
Q 006908          480 HVKGLYRRGM  489 (626)
Q Consensus       480 ~~ka~~~~g~  489 (626)
                      |..|.-.+..
T Consensus       110 n~QA~~Lk~~  119 (144)
T 1y8m_A          110 NKQVGALKSM  119 (144)
T ss_dssp             CHHHHHHHHH
T ss_pred             cHHHHHHHHH
Confidence            9877654433

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.23  E-value=0.018  Score=49.93  Aligned_cols=44  Identities=11%  Similarity=0.058  Sum_probs=38.0

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006908          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA  490 (626)
Q Consensus       447 ~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a  490 (626)
                      -.+++-+|.+++|+|+|.+|+.+|..+|+++|+|..|.-.+..+
T Consensus        78 Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~I  121 (134)
T 3o48_A           78 RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  121 (134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            45788899999999999999999999999999998876554433

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=96.16  E-value=0.0063  Score=64.42  Aligned_cols=147  Identities=12%  Similarity=0.053  Sum_probs=99.3

Q ss_pred             hhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcc--c----CCCCChhHHHHHhh----hhhHHHHHHHHHHHHcC
Q 006908          392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFN--H----VNPQDDEEGKVFVG----KRNLLHLNVAACLLKLG  461 (626)
Q Consensus       392 ~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~--~----~~p~~~ee~~~~~~----~~~~~~~Nla~~~~kl~  461 (626)
                      ...+..+..+...|..+++.|+|+.|++.|.+|...-.  .    +.-..+-+..+...    ..+.-...+..+|.++|
T Consensus       142 ~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G  221 (449)
T 1b89_A          142 KLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRG  221 (449)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCC
Confidence            34455566777899999999999999999999843100  0    00000000000000    00111234668899999


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHHHHHHHH
Q 006908          462 ECRKSIEACNKVLDANPAHVKGLYRRGMAYMA--LGEFEEAQRDFEMMMKVDK-----SSEPDATAALSKLKKQRQEVES  534 (626)
Q Consensus       462 ~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~--lg~~~eA~~~~~kAl~l~P-----~~~~~~~~~l~~l~~~~~~~~~  534 (626)
                      +|.+|+..++++|.+++.+...+.-+|.++.+  .++..++++.|...+.+.|     .+ ...+.++..+.-...+...
T Consensus       222 ~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~-~~~w~e~~~ly~~~~e~d~  300 (449)
T 1b89_A          222 YFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQ-AHLWAELVFLYDKYEEYDN  300 (449)
T ss_dssp             CHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHT-TTCHHHHHHHHHHTTCHHH
T ss_pred             CHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHH-HHHHHHHHHHHHhhchHHH
Confidence            99999999999999999999999999998876  5778899999988877765     43 3566677777655555554


Q ss_pred             HHHHH
Q 006908          535 KARKQ  539 (626)
Q Consensus       535 ~~~~~  539 (626)
                      +-..+
T Consensus       301 A~~tm  305 (449)
T 1b89_A          301 AIITM  305 (449)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44333

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=95.94  E-value=0.017  Score=52.18  Aligned_cols=95  Identities=13%  Similarity=0.179  Sum_probs=63.7

Q ss_pred             HHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCCh---------hHHHH-HhhhhhHHHHHHHHHHHHcCCHHH
Q 006908          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDD---------EEGKV-FVGKRNLLHLNVAACLLKLGECRK  465 (626)
Q Consensus       396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~---------ee~~~-~~~~~~~~~~Nla~~~~kl~~~~~  465 (626)
                      ..++.+.-.|+.+|.+++|.+|...|++||.....+.-...         ..... -...-+.+.+.+|.||.+++++.+
T Consensus        61 ~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~  140 (167)
T 3ffl_A           61 QKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKD  140 (167)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHH
Confidence            35777888999999999999999999999986553211000         00000 000113577889999999999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006908          466 SIEACNKVLDANPAHVKGLYRRGMAY  491 (626)
Q Consensus       466 A~~~~~~aL~~dp~~~ka~~~~g~a~  491 (626)
                      |+...+.+ -..-.+++...-+|+.|
T Consensus       141 Ai~~Le~I-p~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          141 AIAILDGI-PSRQRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred             HHHHHhcC-CchhcCHHHHHHHHHHh
Confidence            99986653 11225677777777655

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.89  E-value=0.17  Score=44.74  Aligned_cols=112  Identities=6%  Similarity=-0.003  Sum_probs=81.6

Q ss_pred             HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (626)
Q Consensus       395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL  474 (626)
                      +.-+..+-..|+-+-. +-.++-+..|++|+..++   |..    .......+.+|.+-|.- ..+++.++|.+.|..++
T Consensus        17 ~~yl~llE~~g~p~~d-~~l~rlrd~YerAia~~P---p~k----~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~   87 (161)
T 4h7y_A           17 LSLLLKLEKNSVPLSD-ALLNKLIGRYSQAIEALP---PDK----YGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR   87 (161)
T ss_dssp             HHHHHHHHHHTCSCCH-HHHHHHHHHHHHHHHHSC---GGG----GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCchh-hHHHHHHHHHHHHHHcCC---ccc----cccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence            3334333334554433 444778899999998543   221    11223345567777744 67799999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 006908          475 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (626)
Q Consensus       475 ~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~  515 (626)
                      .+....+|.|...|+--...|+...|+..+.+|+.+.|...
T Consensus        88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~  128 (161)
T 4h7y_A           88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL  128 (161)
T ss_dssp             HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred             HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence            98777888888888888889999999999999999999864

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.86  E-value=0.18  Score=56.94  Aligned_cols=60  Identities=17%  Similarity=0.147  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006908          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMM  507 (626)
Q Consensus       448 ~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kA  507 (626)
                      .++.-.|.-++..++|+-|+..+.+|..+-|....+||+++.||..+|+|+.|+-.++-+
T Consensus       338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            345556777778899999999999999999999999999999999999999999877765

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=94.56  E-value=0.26  Score=55.36  Aligned_cols=100  Identities=11%  Similarity=-0.003  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHH
Q 006908          450 HLNVAACLLKLG-ECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS--SEPDATAALSKLK  526 (626)
Q Consensus       450 ~~Nla~~~~kl~-~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~--~~~~~~~~l~~l~  526 (626)
                      |...|..-.+.+ +++.|...|.++|+..|++...+...+.....+|+.+.|+..|++|+...|+  ....+.......+
T Consensus       472 yi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE  551 (679)
T 4e6h_A          472 YLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFE  551 (679)
T ss_dssp             HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            333333333433 3666666777777666666666656666666667777777777777776653  1123333333333


Q ss_pred             HHHHHHHHHHHHHHHccccCCCCC
Q 006908          527 KQRQEVESKARKQFKGLFDKKPGE  550 (626)
Q Consensus       527 ~~~~~~~~~~~~~~~~~~~~~~~~  550 (626)
                      ..... ....++.++++....+.+
T Consensus       552 ~~~G~-~~~~~~v~~R~~~~~P~~  574 (679)
T 4e6h_A          552 SKVGS-LNSVRTLEKRFFEKFPEV  574 (679)
T ss_dssp             HHTCC-SHHHHHHHHHHHHHSTTC
T ss_pred             HHcCC-HHHHHHHHHHHHHhCCCC
Confidence            32221 123455666666655543

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=94.38  E-value=0.16  Score=57.07  Aligned_cols=115  Identities=10%  Similarity=-0.010  Sum_probs=75.8

Q ss_pred             HHhhhchhhccccHHHHHHHHHHHHHhcccCC-------------C-CChhH-HHHHh------hhhhHHHHHHHHHHHH
Q 006908          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN-------------P-QDDEE-GKVFV------GKRNLLHLNVAACLLK  459 (626)
Q Consensus       401 ~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~-------------p-~~~ee-~~~~~------~~~~~~~~Nla~~~~k  459 (626)
                      +...++...+.+..+.|...|.+|+..+....             . .+.+. ...+.      .....++...+.....
T Consensus       437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~  516 (679)
T 4e6h_A          437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIY  516 (679)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh
Confidence            33444444566778889999999887422111             1 11111 11111      1122345556666777


Q ss_pred             cCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 006908          460 LGECRKSIEACNKVLDANPA---HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (626)
Q Consensus       460 l~~~~~A~~~~~~aL~~dp~---~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~  515 (626)
                      .++...|...|++|+...|+   ....|-....--...|+.+.+.+.++++++..|++.
T Consensus       517 ~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~  575 (679)
T 4e6h_A          517 VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN  575 (679)
T ss_dssp             HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred             CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence            89999999999999998873   334455555666678999999999999999999873

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=93.91  E-value=0.63  Score=41.89  Aligned_cols=67  Identities=15%  Similarity=0.114  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC---------------CCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHh
Q 006908          448 LLHLNVAACLLKLGECRKSIEACNKVLD--AN---------------PAHVKGL-YRRGMAYMALGEFEEAQRDFEMMMK  509 (626)
Q Consensus       448 ~~~~Nla~~~~kl~~~~~A~~~~~~aL~--~d---------------p~~~ka~-~~~g~a~~~lg~~~eA~~~~~kAl~  509 (626)
                      +..+--+.||.++++|..|+.+.+.+|+  .+               |.+-.-+ ..+|..+..+|..++|+..|.+...
T Consensus        63 Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~  142 (242)
T 3kae_A           63 TSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFG  142 (242)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence            3444579999999999999999999993  22               3344443 3469999999999999999999999


Q ss_pred             cCCCC
Q 006908          510 VDKSS  514 (626)
Q Consensus       510 l~P~~  514 (626)
                      ..|=.
T Consensus       143 ~~~lf  147 (242)
T 3kae_A          143 KSFLF  147 (242)
T ss_dssp             HCCCH
T ss_pred             Ccccc
Confidence            98864

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=93.82  E-value=0.34  Score=47.29  Aligned_cols=63  Identities=19%  Similarity=0.166  Sum_probs=57.9

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Q 006908          456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDA  518 (626)
Q Consensus       456 ~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~  518 (626)
                      ..++.+....|+..+...++-+|.|++....+-+.++-.|+|+.|.+-++.+.+++|...+.+
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a   68 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA   68 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHH
Confidence            457889999999999999999999999999999999999999999999999999999865433

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=93.70  E-value=0.17  Score=52.01  Aligned_cols=69  Identities=13%  Similarity=0.084  Sum_probs=55.6

Q ss_pred             hhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 006908          404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG  483 (626)
Q Consensus       404 ~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka  483 (626)
                      .|..++..|+++.|+..+++|+.    ++|.            ...|.-+|.++.-.|++++|++.+.+|+.++|... .
T Consensus       283 lal~~l~~gd~d~A~~~l~rAl~----Ln~s------------~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t  345 (372)
T 3ly7_A          283 KAVSALVKGKTDESYQAINTGID----LEMS------------WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-T  345 (372)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHH----HCCC------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-H
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHh----cCCC------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-h
Confidence            55556678999999999999999    4432            34667789999999999999999999999999654 5


Q ss_pred             HHHHHH
Q 006908          484 LYRRGM  489 (626)
Q Consensus       484 ~~~~g~  489 (626)
                      |+...+
T Consensus       346 ~~~~~~  351 (372)
T 3ly7_A          346 LYWIEN  351 (372)
T ss_dssp             HHHHHH
T ss_pred             HHHHhC
Confidence            554433

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=93.29  E-value=0.39  Score=50.05  Aligned_cols=99  Identities=16%  Similarity=0.107  Sum_probs=79.2

Q ss_pred             hhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----C
Q 006908          403 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN----P  478 (626)
Q Consensus       403 ~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d----p  478 (626)
                      ..|..++..|+|.+|...+.+.+..+..+.  +       ..+...+|......|..++++.++...+.+|....    +
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~d--d-------~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~  174 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLD--D-------KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYC  174 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSS--C-------THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccc--c-------chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCC
Confidence            678899999999999999999999876542  1       23556788889999999999999999999987553    1


Q ss_pred             -CCHHH--HHHHHHHHH-HcCCHHHHHHHHHHHHhc
Q 006908          479 -AHVKG--LYRRGMAYM-ALGEFEEAQRDFEMMMKV  510 (626)
Q Consensus       479 -~~~ka--~~~~g~a~~-~lg~~~eA~~~~~kAl~l  510 (626)
                       ....|  ..--|..|+ ..++|..|..+|-.|++-
T Consensus       175 ~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          175 PPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence             12234  444588899 899999999999998753

>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=92.78  E-value=0.79  Score=45.80  Aligned_cols=113  Identities=14%  Similarity=0.133  Sum_probs=72.2

Q ss_pred             HHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHc--CCH-----HHHHHHHHHH
Q 006908          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL--GEC-----RKSIEACNKV  473 (626)
Q Consensus       401 ~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl--~~~-----~~A~~~~~~a  473 (626)
                      ..+.|-.+|..|+|.+|+..|+.+|..+.-+.-.+.+|....+++...|.--+-.+.+.+  ...     +.....++-+
T Consensus       105 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lELA  184 (320)
T 3mkr_B          105 RLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEMA  184 (320)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHH
Confidence            457899999999999999999999998776666666666666665554433222222222  111     2222222222


Q ss_pred             H-----HhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908          474 L-----DANPAHV-KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (626)
Q Consensus       474 L-----~~dp~~~-ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~  513 (626)
                      -     .+.|.+. -++..--...++.++|--|....++.|++.|+
T Consensus       185 AYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~  230 (320)
T 3mkr_B          185 AYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK  230 (320)
T ss_dssp             HHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred             HHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence            1     2233332 23434444677899999999999999999986

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=92.55  E-value=0.66  Score=49.89  Aligned_cols=80  Identities=9%  Similarity=0.020  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006908          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (626)
Q Consensus       448 ~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~  527 (626)
                      .++.++|........+..|..+|.+|+.+.|.+..+|..+|......++.-+|+-+|-+++...... +.++.+|..+-.
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf-~~a~~nL~~~f~  231 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPF-PAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCC-HHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCC-hhHHHHHHHHHH
Confidence            4677888888888899999999999999999999999999999999999999999999999987666 567777766644


Q ss_pred             H
Q 006908          528 Q  528 (626)
Q Consensus       528 ~  528 (626)
                      +
T Consensus       232 ~  232 (497)
T 1ya0_A          232 K  232 (497)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A

Probab=92.17  E-value=0.55  Score=46.96  Aligned_cols=115  Identities=15%  Similarity=0.102  Sum_probs=70.5

Q ss_pred             HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcC-------CHHHHHHHHHH
Q 006908          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-------ECRKSIEACNK  472 (626)
Q Consensus       400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~-------~~~~A~~~~~~  472 (626)
                      ...+.|-.+|..|+|.+|+..|+.+|..+.-+.-.+.+|.....++...|.--+-.+.+.+.       +..+.++....
T Consensus       116 ~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAAY  195 (325)
T 3mv2_A          116 EKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAAY  195 (325)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence            34568999999999999999999999877655555555555555554444322222222221       11222221111


Q ss_pred             H--HHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          473 V--LDANPAHV-KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       473 a--L~~dp~~~-ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      -  ..+.|.+. -++..--...++.++|--|....++.|++.|..
T Consensus       196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~  240 (325)
T 3mv2_A          196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSG  240 (325)
T ss_dssp             GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS
T ss_pred             hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH
Confidence            1  12233332 234444456778999999999999999999974

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.62  E-value=0.34  Score=51.24  Aligned_cols=99  Identities=15%  Similarity=0.025  Sum_probs=77.1

Q ss_pred             HHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Q 006908          401 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN---  477 (626)
Q Consensus       401 ~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d---  477 (626)
                      +...|..+++.|++..|++.|.++.......            ..+..+++++..+++..++|..|...+.++..+-   
T Consensus       134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~------------~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~  201 (429)
T 4b4t_R          134 WINLGEYYAQIGDKDNAEKTLGKSLSKAIST------------GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG  201 (429)
T ss_dssp             CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCC------------CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh------------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC
Confidence            4478889999999999999999988754321            1245688889999999999999999999996552   


Q ss_pred             CCC-H--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006908          478 PAH-V--KGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (626)
Q Consensus       478 p~~-~--ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~  511 (626)
                      ++. .  +.....|.+++..++|.+|...|..++.-.
T Consensus       202 ~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          202 GDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF  238 (429)
T ss_dssp             CCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence            221 2  334456778888999999999998877653

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=90.65  E-value=2.4  Score=41.36  Aligned_cols=64  Identities=17%  Similarity=0.238  Sum_probs=53.4

Q ss_pred             hchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 006908          405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG  483 (626)
Q Consensus       405 Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka  483 (626)
                      ...+++.|+.+.|+......++    ..|.|.           .+...+-..+.-.|+|++|...+..+.+++|.....
T Consensus         4 ~~~ll~~g~L~~al~~~~~~VR----~~P~da-----------~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~   67 (273)
T 1zbp_A            4 WKNALSEGQLQQALELLIEAIK----ASPKDA-----------SLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG   67 (273)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHH----TCTTCH-----------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHH----hCCcCH-----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence            3567899999999999999999    788873           345556666677899999999999999999987654

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=88.70  E-value=4.9  Score=43.08  Aligned_cols=109  Identities=13%  Similarity=-0.031  Sum_probs=76.1

Q ss_pred             HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHH----------HH---H----------------hhhhhHHH
Q 006908          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG----------KV---F----------------VGKRNLLH  450 (626)
Q Consensus       400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~----------~~---~----------------~~~~~~~~  450 (626)
                      .+...+..+...|+.+.|...|.+|+..     |.+..-+          +.   +                ......+|
T Consensus       215 lW~~ya~~~~~~~~~~~ar~i~erAi~~-----P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw  289 (493)
T 2uy1_A          215 VYFFYSEYLIGIGQKEKAKKVVERGIEM-----SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLR  289 (493)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHH
Confidence            3555666677889999999999999994     4332110          00   0                01112456


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCC
Q 006908          451 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG-EFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       451 ~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg-~~~eA~~~~~kAl~l~P~~  514 (626)
                      .+.+....+.+..+.|...+.+| ...+.....|...|..-..++ +++.|+..|+++++..|++
T Consensus       290 ~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~  353 (493)
T 2uy1_A          290 INHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDS  353 (493)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCC
Confidence            66777777788899999999999 433345566666666655556 6999999999999998886

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=88.13  E-value=0.72  Score=52.10  Aligned_cols=59  Identities=24%  Similarity=0.297  Sum_probs=50.3

Q ss_pred             HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006908          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV  473 (626)
Q Consensus       400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~a  473 (626)
                      .+..++..+..+|+|+.|+.+-++|+.    +.|.+           ..+|..||.||.++++|+.|+-..+-+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~----~aPse-----------F~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTE----LALDS-----------FESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSSC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHh----cCchh-----------hHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            566778888899999999999999999    56655           568999999999999999998765544

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=87.50  E-value=0.62  Score=36.88  Aligned_cols=40  Identities=30%  Similarity=0.280  Sum_probs=34.7

Q ss_pred             Chhh-HHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcc
Q 006908          390 SFDG-IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFN  429 (626)
Q Consensus       390 ~~~e-~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~  429 (626)
                      +..+ .++.|..+..+|..+=+.|+|.+|+.+|..|+.+|.
T Consensus         2 ~~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~   42 (83)
T 2v6y_A            2 SAQVMLEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLS   42 (83)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            4444 678899999999999999999999999999999654

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=86.92  E-value=6.1  Score=42.42  Aligned_cols=98  Identities=9%  Similarity=0.019  Sum_probs=74.5

Q ss_pred             HhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Q 006908          402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN-PAH  480 (626)
Q Consensus       402 k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d-p~~  480 (626)
                      ...-+.+.+.|++++|...|.+....  .+.|+            ...|+.+-.+|.+.|++++|...+.+..+.. .-+
T Consensus       109 n~lI~~~~~~g~~~~A~~l~~~M~~~--g~~Pd------------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd  174 (501)
T 4g26_A          109 TNGARLAVAKDDPEMAFDMVKQMKAF--GIQPR------------LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE  174 (501)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHT--TCCCC------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCc------------cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC
Confidence            33445677889999999999887651  12332            3467777788889999999999999887653 226


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC
Q 006908          481 VKGLYRRGMAYMALGEFEEAQRDFEMMMKV--DKS  513 (626)
Q Consensus       481 ~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l--~P~  513 (626)
                      ...|..+-.+|.+.|++++|.+.|++..+.  .|+
T Consensus       175 ~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps  209 (501)
T 4g26_A          175 EPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVS  209 (501)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBC
T ss_pred             HHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcC
Confidence            778888889999999999999999987654  565

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=85.40  E-value=11  Score=40.39  Aligned_cols=92  Identities=8%  Similarity=0.052  Sum_probs=73.2

Q ss_pred             hhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Q 006908          408 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN-PAHVKGLYR  486 (626)
Q Consensus       408 ~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d-p~~~ka~~~  486 (626)
                      ..+.+.++.|...|.+...  ..+.|+            ...|+.+-.+|.+.|++++|+..+.+..... .-+...|..
T Consensus        80 ~~~~~~l~~A~~lf~~M~~--~G~~Pd------------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~  145 (501)
T 4g26_A           80 SSPNPGLSRGFDIFKQMIV--DKVVPN------------EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP  145 (501)
T ss_dssp             SSCCHHHHHHHHHHHHHHH--TTCCCC------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             hhhcchHHHHHHHHHHHHH--hCCCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence            3456678889999988765  123343            3578888999999999999999999987753 237888888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhc--CCC
Q 006908          487 RGMAYMALGEFEEAQRDFEMMMKV--DKS  513 (626)
Q Consensus       487 ~g~a~~~lg~~~eA~~~~~kAl~l--~P~  513 (626)
                      +-.+|...|++++|.+.|+...+.  .|+
T Consensus       146 lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd  174 (501)
T 4g26_A          146 ALFGFCRKGDADKAYEVDAHMVESEVVPE  174 (501)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCCC
Confidence            999999999999999999998775  455

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=85.19  E-value=9.7  Score=40.16  Aligned_cols=106  Identities=13%  Similarity=0.090  Sum_probs=78.1

Q ss_pred             HHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006908          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (626)
Q Consensus       396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~  475 (626)
                      +.+......+..++..|+|.+|.........-....  .+       ...+..+++-....|+..++|.+|...+.++..
T Consensus       135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~--~~-------~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~  205 (445)
T 4b4t_P          135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGS--ME-------MSEKIQFILEQMELSILKGDYSQATVLSRKILK  205 (445)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS--SC-------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc--cc-------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            355566678899999999999999998876432211  12       223456777788899999999999999998742


Q ss_pred             ---hCCCC--HHH--HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 006908          476 ---ANPAH--VKG--LYRRGMAYMALGEFEEAQRDFEMMMKV  510 (626)
Q Consensus       476 ---~dp~~--~ka--~~~~g~a~~~lg~~~eA~~~~~kAl~l  510 (626)
                         -.+..  .++  +...|..+...++|.+|..+|..++..
T Consensus       206 ~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          206 KTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             hhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence               12222  333  455688888999999999999988764

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=84.29  E-value=1.7  Score=36.85  Aligned_cols=43  Identities=23%  Similarity=0.315  Sum_probs=36.5

Q ss_pred             CCChh-hHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhccc
Q 006908          388 GLSFD-GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  430 (626)
Q Consensus       388 ~~~~~-e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~  430 (626)
                      .|+.. ..++.|..+..+|..+=+.|+|.+|+.+|..|+.+|..
T Consensus         7 ~m~~~~~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~   50 (117)
T 2cpt_A            7 GMSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLH   50 (117)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             cCCccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            35545 67889999999999999999999999999999996543

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=81.16  E-value=1.5  Score=34.61  Aligned_cols=38  Identities=24%  Similarity=0.242  Sum_probs=34.0

Q ss_pred             hhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcc
Q 006908          392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFN  429 (626)
Q Consensus       392 ~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~  429 (626)
                      ...++.|..+..+|..+=+.|+|.+|+.+|..|+..|.
T Consensus        13 ~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~   50 (83)
T 2w2u_A           13 VMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLA   50 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            45677899999999999999999999999999999654

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=80.52  E-value=1.8  Score=34.36  Aligned_cols=41  Identities=15%  Similarity=0.112  Sum_probs=34.5

Q ss_pred             CChhhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcc
Q 006908          389 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFN  429 (626)
Q Consensus       389 ~~~~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~  429 (626)
                      |+....++.|..+..+|...=+.|+|++|+.+|..|+.+|.
T Consensus         4 m~~~~~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~   44 (85)
T 2v6x_A            4 MSTGDFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLM   44 (85)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            33345677888999999999999999999999999999654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	626
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	3e-18
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	1e-15
d1kt1a3	115	d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M	4e-14
d1kt1a3	115	d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M	2e-11
d1kt1a3	115	d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M	1e-08
d1r9ha_	118	d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd	1e-13
d1r9ha_	118	d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd	1e-12
d1r9ha_	118	d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd	2e-08
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	1e-12
d1q1ca2	117	d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H	1e-12
d1q1ca2	117	d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H	3e-11
d1q1ca2	117	d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H	6e-10
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	1e-12
d1pbka_	116	d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId:	3e-12
d1pbka_	116	d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId:	3e-10
d1pbka_	116	d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId:	5e-05
d1q1ca1	120	d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu	4e-12
d1q1ca1	120	d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu	1e-10
d1q1ca1	120	d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu	1e-07
d1kt1a2	111	d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo	8e-12
d1kt1a2	111	d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo	3e-11
d1kt1a2	111	d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo	2e-09
d1yata_	113	d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas	2e-11
d1yata_	113	d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas	5e-09
d1yata_	113	d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas	8e-06
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	4e-11
d1fd9a_	204	d.26.1.1 (A:) Macrophage infectivity potentiator p	7e-10
d1fd9a_	204	d.26.1.1 (A:) Macrophage infectivity potentiator p	1e-07
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	8e-10
d1u79a_	125	d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis tha	3e-09
d1u79a_	125	d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis tha	2e-04
d2ppna1	107	d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12)	4e-09
d2ppna1	107	d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12)	2e-08
d2ppna1	107	d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12)	1e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	7e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-07
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	8e-09
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	1e-06
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	1e-08
d1q6ha_	210	d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	1e-08
d1q6ha_	210	d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	2e-07
d1jvwa_	160	d.26.1.1 (A:) Macrophage infectivity potentiator p	4e-07
d1jvwa_	160	d.26.1.1 (A:) Macrophage infectivity potentiator p	7e-05
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	2e-06
d1ix5a_	151	d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcu	9e-06
d1ix5a_	151	d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcu	0.003
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	1e-05
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	0.003
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	2e-05
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	2e-05
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	5e-05
d2ff4a2	179	a.118.8.3 (A:105-283) Probable regulatory protein	1e-04
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	2e-04
d2pqrb1	124	a.118.8.1 (B:5-128) Mitochondria fission protein F	2e-04
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	8e-04
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	0.001
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.003

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 80.4 bits (197), Expect = 3e-18
 Identities = 47/160 (29%), Positives = 81/160 (50%), Gaps = 1/160 (0%)

Query: 389 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNL 448
           +     +++A  ++  G   FK GK+  A  +Y K++          ++E K        
Sbjct: 6   MDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA 65

Query: 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508
             LN+A C LKL E  K++E C+K L  + A+ KGLYRRG A + + EFE A+ DFE ++
Sbjct: 66  AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL 125

Query: 509 KVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKP 548
           +V+  +   A   +   +K+ +E   + R+ +  +F K  
Sbjct: 126 EVNPQN-KAARLQIFMCQKKAKEHNERDRRTYANMFKKFA 164

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.8 bits (177), Expect = 1e-15
 Identities = 43/158 (27%), Positives = 92/158 (58%), Gaps = 1/158 (0%)

Query: 389 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNL 448
           ++ +  ++++  ++  G   FKEGK++ A  +Y+K++    + +   +EE +     R  
Sbjct: 4   MNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA 63

Query: 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508
            HLN+A C LKL     +IE+CNK L+ +  + KGL RRG A++A+ +FE A+ DF+ ++
Sbjct: 64  SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVL 123

Query: 509 KVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDK 546
           ++  ++   A   L+  +++ +   ++ +K +  +F++
Sbjct: 124 QLYPNN-KAAKTQLAVCQQRIRRQLAREKKLYANMFER 160

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 66.6 bits (162), Expect = 4e-14
 Identities = 25/122 (20%), Positives = 46/122 (37%), Gaps = 11/122 (9%)

Query: 262 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 321
           D+L DG +I+R  R G+G      P   + + +H +G                 +G+   
Sbjct: 3   DLLEDGGIIRRTKRRGEGY---SNPNEGARVQIHLEGRCGGRVFDCRDVAFTVGEGED-- 57

Query: 322 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAY-DKFLRPANVPEGAHIQWEIELLGF 380
                  +P G +  +  M   E  ++   P Y + +       +   A + +E+ L  F
Sbjct: 58  -----HDIPIGIDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSF 112

Query: 381 EK 382
           EK
Sbjct: 113 EK 114

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 59.3 bits (143), Expect = 2e-11
 Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 10/118 (8%)

Query: 29  GSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKI 88
           G +++   R G G S P++G +V  H   R    V      +   G+G           I
Sbjct: 8   GGIIRRTKRRGEGYSNPNEGARVQIHLEGRCGGRVFDCRDVAFTVGEGEDHD-------I 60

Query: 89  LLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKA 146
            +G+ + +  M + E  +  + P+  +GE   P         + EL +E+ +  F KA
Sbjct: 61  PIGIDKALEKMQREEQCILHLGPRYGFGEAGKP---KFGIEPNAELIYEVTLKSFEKA 115

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 51.6 bits (123), Expect = 1e-08
 Identities = 18/113 (15%), Positives = 44/113 (38%), Gaps = 4/113 (3%)

Query: 149 IADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVP 208
           + +D G++++    G+G+  P     V+  +  + G                      +P
Sbjct: 4   LLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRCGGRVFDCRDVAFTVGEGEDHD--IP 61

Query: 209 KGLEMGIGTMTREEKAVIYVTSQ--YLTPSPLMPVVEGCEEVHFEVELVHLIQ 259
            G++  +  M REE+ ++++  +  +         +E   E+ +EV L    +
Sbjct: 62  IGIDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEK 114

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 65.5 bits (159), Expect = 1e-13
 Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 7/116 (6%)

Query: 265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSS 324
            DG ++K   ++G+G      P   + + VHY G L N  K         + G    F+ 
Sbjct: 8   KDGGVLKLIKKEGQGV---VKPTTGTTVKVHYVGTLENGTKFDSSR----DRGDQFSFNL 60

Query: 325 GEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 380
           G G V +G+++ V  M  GE+A  T   DY Y     P  +P GA + +E+EL  +
Sbjct: 61  GRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEW 116

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 62.4 bits (151), Expect = 1e-12
 Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 8/115 (6%)

Query: 29  GSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKI 88
           G ++K + + G G   P+ G  V  H      +G    +       +G      LG+  +
Sbjct: 10  GGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENG----TKFDSSRDRGDQFSFNLGRGNV 65

Query: 89  LLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143
           + G   G+ TM KGEV+ F ++    YG+       P   P    L FE+E+ ++
Sbjct: 66  IKGWDLGVATMTKGEVAEFTIRSDYGYGDAGS----PPKIPGGATLIFEVELFEW 116

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 50.5 bits (120), Expect = 2e-08
 Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 2/106 (1%)

Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILS-HREGEPYFFTFGKSEVPKG 210
           D GV+K +  EGQG   P     VK        +G    S    G+ + F  G+  V KG
Sbjct: 9   DGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKG 68

Query: 211 LEMGIGTMTREEKAVIYVTSQYL-TPSPLMPVVEGCEEVHFEVELV 255
            ++G+ TMT+ E A   + S Y    +   P + G   + FEVEL 
Sbjct: 69  WDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELF 114

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 63.9 bits (154), Expect = 1e-12
 Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 2/144 (1%)

Query: 389 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNL 448
            + +  +  A  I+  GN  FK+ +   A  KY++ L  F H    DD+          +
Sbjct: 8   YTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 67

Query: 449 -LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMM 507
             +LN+A C  K  +  K+I+  +KVL  +  +VK LY+ G+A M  G  EEA+ +    
Sbjct: 68  SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 127

Query: 508 MKVDKSSEPDATAALSKLKKQRQE 531
             ++ ++  D   +      + +E
Sbjct: 128 ASLNPNN-LDIRNSYELCVNKLKE 150

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (151), Expect = 1e-12
 Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 10/119 (8%)

Query: 29  GSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKI 88
           G +++ +   G G + P++G  V         D +  +       G+G  +    G    
Sbjct: 8   GGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENLDLPYGLE-- 65

Query: 89  LLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAK 147
                  I  M KGE S+  +KP   +G            P + EL +E+ +  F KAK
Sbjct: 66  -----RAIQRMEKGEHSIVYLKPSYAFGSVGKE---KFQIPPNAELKYELHLKSFEKAK 116

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (141), Expect = 3e-11
 Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 11/121 (9%)

Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           DG +I+R    G+G      P   +++ V  +G   ++            +G+ L+    
Sbjct: 7   DGGIIRRIQTRGEGY---AKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENLD---- 59

Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKF-LRPANVPEGAHIQWEIELLGFEKPK 384
              +P G E  ++ M  GE ++V   P YA+         +P  A +++E+ L  FEK K
Sbjct: 60  ---LPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAK 116

Query: 385 D 385
           +
Sbjct: 117 E 117

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (131), Expect = 6e-10
 Identities = 21/114 (18%), Positives = 45/114 (39%), Gaps = 4/114 (3%)

Query: 151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKG 210
           +D G+++++   G+G+  P     V+  +     D          E         ++P G
Sbjct: 6   EDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFE--IGEGENLDLPYG 63

Query: 211 LEMGIGTMTREEKAVIYVTSQYLTPSPLMP--VVEGCEEVHFEVELVHLIQVRD 262
           LE  I  M + E +++Y+   Y   S       +    E+ +E+ L    + ++
Sbjct: 64  LERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKE 117

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.6 bits (156), Expect = 1e-12
 Identities = 37/201 (18%), Positives = 75/201 (37%), Gaps = 21/201 (10%)

Query: 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC 456
            A++++  GNRLF   K+  A A Y + +      NP                + N A C
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLVAV-----------YYTNRALC 47

Query: 457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP 516
            LK+ +  +++  C + L+ +   VK  +  G   + +  ++EA  + +    + K    
Sbjct: 48  YLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL 107

Query: 517 ----DATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGIENQGED--QAAGKNEN 570
               D  +AL   KK+R     + R   +         +     E + E+  +    +E+
Sbjct: 108 NFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHED 167

Query: 571 DDSEQESDGDEAQEFHEAAAE 591
           D   +        +  +  A+
Sbjct: 168 DGHIRAQQACIEAKHDKYMAD 188

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (148), Expect = 3e-12
 Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 6/116 (5%)

Query: 31  LMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSE---YGGKGIPIRHVLGKSK 87
             K+V++ G   + P  GD V    T    DG + ++             P+   +G  K
Sbjct: 3   YTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGK 62

Query: 88  ILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143
           ++ G  E + TM KGE +  +++P+  YG+   P    +  P + +L FE+E++D 
Sbjct: 63  VIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQP---DAKIPPNAKLTFEVELVDI 115

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (134), Expect = 3e-10
 Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 7/118 (5%)

Query: 268 RLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLN---EEKKVFYDTRVDNDGQPLEFSS 324
           +  K  ++ G      + P    ++   Y G L +    +  +    +   + +PL F  
Sbjct: 2   KYTKSVLKKGDKT---NFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKV 58

Query: 325 GEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRP-ANVPEGAHIQWEIELLGFE 381
           G G V  G++  +  M  GE A +   P++AY K  +P A +P  A + +E+EL+  +
Sbjct: 59  GVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVDID 116

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 5e-05
 Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 10/112 (8%)

Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHRE--------GEPYFFTFGKS 205
              K V+ +G     P+    V  W +    DG +  ++ +         +P  F  G  
Sbjct: 2   KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVG 61

Query: 206 EVPKGLEMGIGTMTREEKAVIYVTSQYLTPS--PLMPVVEGCEEVHFEVELV 255
           +V +G +  + TM++ EKA + +  ++           +    ++ FEVELV
Sbjct: 62  KVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELV 113

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.3 bits (148), Expect = 4e-12
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 7/118 (5%)

Query: 265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSS 324
            D  ++K   R+G G    + P+    + VHY G LL+  K      R D          
Sbjct: 9   QDEGVLKVIKREGTGT---EMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFD----L 61

Query: 325 GEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEK 382
           G+G V + +++ +  M  GE+  +TC P+YAY     P  +P  A + +E+EL  F+ 
Sbjct: 62  GKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKG 119

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (138), Expect = 1e-10
 Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 8/115 (6%)

Query: 29  GSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKI 88
             ++K + R G G   P  GD+V  H T   LDG    +       +       LGK ++
Sbjct: 11  EGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDG----TKFDSSLDRKDKFSFDLGKGEV 66

Query: 89  LLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143
           +      I TM  GEV     KP+  YG        P   P +  L FE+E+ +F
Sbjct: 67  IKAWDIAIATMKVGEVCHITCKPEYAYGSAGS----PPKIPPNATLVFEVELFEF 117

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (115), Expect = 1e-07
 Identities = 31/106 (29%), Positives = 43/106 (40%), Gaps = 2/106 (1%)

Query: 152 DFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGE-PYFFTFGKSEVPKG 210
           D GV+K +  EG G E P     V    +    DG    S  + +  + F  GK EV K 
Sbjct: 10  DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKA 69

Query: 211 LEMGIGTMTREEKAVIYVTSQYL-TPSPLMPVVEGCEEVHFEVELV 255
            ++ I TM   E   I    +Y    +   P +     + FEVEL 
Sbjct: 70  WDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELF 115

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 60.2 bits (145), Expect = 8e-12
 Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 8/115 (6%)

Query: 29  GSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKI 88
             ++K V R G G+ TP  GD+V  H   +  +G   +S+         P    +GK ++
Sbjct: 4   RGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRN----EPFVFSIGKGQV 59

Query: 89  LLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143
           +     G+ TM KGE+     KP+  YG       +    P +  L FE+E++DF
Sbjct: 60  IKAWDIGVATMKKGEICHLLCKPEYAYGAT----GSLPKIPSNATLFFEVELLDF 110

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 58.6 bits (141), Expect = 3e-11
 Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 7/116 (6%)

Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           D  ++K   R G GE   + P+    + VHY G L N +K         +  +P  FS G
Sbjct: 3   DRGVLKIVKRVGHGE---ETPMIGDRVYVHYNGKLANGKKFDSSH----DRNEPFVFSIG 55

Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           +G V + +++ V  M  GEI  + C P+YAY        +P  A + +E+ELL F+
Sbjct: 56  KGQVIKAWDIGVATMKKGEICHLLCKPEYAYGATGSLPKIPSNATLFFEVELLDFK 111

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 53.2 bits (127), Expect = 2e-09
 Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 2/107 (1%)

Query: 151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYF-FTFGKSEVPK 209
            D GV+K V   G G ETP     V    + K  +GK   S  +    F F+ GK +V K
Sbjct: 2   KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIK 61

Query: 210 GLEMGIGTMTREEKAVIYVTSQYLTPSP-LMPVVEGCEEVHFEVELV 255
             ++G+ TM + E   +    +Y   +   +P +     + FEVEL+
Sbjct: 62  AWDIGVATMKKGEICHLLCKPEYAYGATGSLPKIPSNATLFFEVELL 108

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.6 bits (141), Expect = 2e-11
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 8/118 (6%)

Query: 25  KIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLG 84
           +++ G++    + PG G + P  GD V  H T    +G   +S       +G P +  +G
Sbjct: 2   EVIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDS----SVDRGSPFQCNIG 57

Query: 85  KSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMID 142
             +++ G   GIP +  GE +   +     YG        P   P +  L F++E++ 
Sbjct: 58  VGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGF----PGLIPPNSTLVFDVELLK 111

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.1 bits (124), Expect = 5e-09
 Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 7/114 (6%)

Query: 266 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 325
           +G +   RI  G G      P    L+ +HY G L N +K         + G P + + G
Sbjct: 5   EGNVKIDRISPGDGA---TFPKTGDLVTIHYTGTLENGQKFDSSV----DRGSPFQCNIG 57

Query: 326 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLG 379
            G V +G+++ +  +  GE A +T P  YAY     P  +P  + + +++ELL 
Sbjct: 58  VGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELLK 111

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.8 bits (100), Expect = 8e-06
 Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 2/104 (1%)

Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILS-HREGEPYFFTFGKSEVPKGLE 212
            V    I+ G G   P+    V    +    +G+   S    G P+    G  +V KG +
Sbjct: 7   NVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWD 66

Query: 213 MGIGTMTREEKAVIYVTSQYL-TPSPLMPVVEGCEEVHFEVELV 255
           +GI  ++  EKA + +   Y   P     ++     + F+VEL+
Sbjct: 67  VGIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELL 110

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.7 bits (143), Expect = 4e-11
 Identities = 39/152 (25%), Positives = 75/152 (49%), Gaps = 2/152 (1%)

Query: 390 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNL- 448
             D I+  +E ++  GN  FK   +E+A  KY KVLR         ++     +    L 
Sbjct: 19  DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALS 78

Query: 449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508
             LN+ AC LK+ + + ++++C + L+ +P++ K LYRR   +  L E+++A  D +   
Sbjct: 79  CVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQ 138

Query: 509 KVDKSSEPDATAALSKLKKQRQEVESKARKQF 540
           ++         A L K+K++ +  + K +  +
Sbjct: 139 EIAPED-KAIQAELLKVKQKIKAQKDKEKAAY 169

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Length = 204

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

 Score = 56.8 bits (136), Expect = 7e-10
 Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 12/137 (8%)

Query: 246 EEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEK 305
           +   F  E  +   V  +    +       +G      D       + V Y G L++   
Sbjct: 79  KGEAFLTENKNKPGVVVLPSGLQYKVINSGNGVKPGKSDT------VTVEYTGRLIDGTV 132

Query: 306 KVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANV 365
               +      G+P  F      V  G+   ++LM  G    +  P   AY        +
Sbjct: 133 FDSTE----KTGKPATF--QVSQVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSVGGPI 186

Query: 366 PEGAHIQWEIELLGFEK 382
                + ++I L+  +K
Sbjct: 187 GPNETLIFKIHLISVKK 203

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Length = 204

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

 Score = 50.2 bits (119), Expect = 1e-07
 Identities = 25/121 (20%), Positives = 42/121 (34%), Gaps = 10/121 (8%)

Query: 26  IVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGK 85
           +V  S ++  +   G    P   D V    T R +DG + +ST                 
Sbjct: 94  VVLPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDSTE------KTGKPATFQV 147

Query: 86  SKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAK 145
           S+++ G  E +  M  G      +   + YG              +E L F+I +I   K
Sbjct: 148 SQVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRS----VGGPIGPNETLIFKIHLISVKK 203

Query: 146 A 146
           +
Sbjct: 204 S 204

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (131), Expect = 8e-10
 Identities = 27/142 (19%), Positives = 53/142 (37%), Gaps = 24/142 (16%)

Query: 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC 456
           +A K +  GN  +K+  F+ A   Y+K       ++P +                N AA 
Sbjct: 3   QALKEKELGNDAYKKKDFDTALKHYDKA----KELDPTNMT-----------YITNQAAV 47

Query: 457 LLKLGECRKSIEACNKVLDANPAHV-------KGLYRRGMAYMALGEFEEAQRDFEMMMK 509
             + G+  K  E C K ++    +        K   R G +Y    ++++A   +   + 
Sbjct: 48  YFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA 107

Query: 510 VDKSSEPDATAALSKLKKQRQE 531
             ++  PD      + +K  +E
Sbjct: 108 EHRT--PDVLKKCQQAEKILKE 127

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 125

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 52.9 bits (126), Expect = 3e-09
 Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 4/124 (3%)

Query: 24  MKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPI--RH 81
             + P  L       G G      G  +  H   +  +G + +S+ +        I    
Sbjct: 3   FSVSPSGLAFCDKVVGYGP-EAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGE 61

Query: 82  VLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDC-PVAAPSTFPKDEELHFEIEM 140
           V+      +   +GIP ML G     ++ P++ YG+            P    L F+IE 
Sbjct: 62  VIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEY 121

Query: 141 IDFA 144
           I  A
Sbjct: 122 IGKA 125

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 125

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 39.5 bits (91), Expect = 2e-04
 Identities = 29/122 (23%), Positives = 45/122 (36%), Gaps = 19/122 (15%)

Query: 269 LIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL 328
           L       G G   +       L+  HY G L N +          N G+PL F  G G 
Sbjct: 10  LAFCDKVVGYGPEAV----KGQLIKAHYVGKLENGKVFDSSY----NRGKPLTFRIGVGE 61

Query: 329 VPEGFEMCV------RLMLPGEIALVTCPPDYAY-----DKFLRPANVPEGAHIQWEIEL 377
           V +G++  +        ML G    +  PP+ AY             +P  + + ++IE 
Sbjct: 62  VIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEY 121

Query: 378 LG 379
           +G
Sbjct: 122 IG 123

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (125), Expect = 4e-09
 Identities = 26/113 (23%), Positives = 43/113 (38%), Gaps = 8/113 (7%)

Query: 31  LMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILL 90
           +    + PG G + P  G     H T    DG            +  P + +LGK +++ 
Sbjct: 2   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDG----KKFDSSRDRNKPFKFMLGKQEVIR 57

Query: 91  GLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF 143
           G  EG+  M  G+ +   + P   YG        P   P    L F++E++  
Sbjct: 58  GWEEGVAQMSVGQRAKLTISPDYAYG----ATGHPGIIPPHATLVFDVELLKL 106

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (119), Expect = 2e-08
 Identities = 34/113 (30%), Positives = 46/113 (40%), Gaps = 7/113 (6%)

Query: 269 LIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL 328
           +    I  G G      P       VHY GML + +K      R       L    G+  
Sbjct: 2   VQVETISPGDGR---TFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFML----GKQE 54

Query: 329 VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           V  G+E  V  M  G+ A +T  PDYAY     P  +P  A + +++ELL  E
Sbjct: 55  VIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (114), Expect = 1e-07
 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 2/104 (1%)

Query: 154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILS-HREGEPYFFTFGKSEVPKGLE 212
           GV  + I+ G G   P+         +    DGK   S     +P+ F  GK EV +G E
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60

Query: 213 MGIGTMTREEKAVIYVTSQY-LTPSPLMPVVEGCEEVHFEVELV 255
            G+  M+  ++A + ++  Y    +    ++     + F+VEL+
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELL 104

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (133), Expect = 7e-09
 Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 15/104 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
            +R ++ G FE A+    ++ R      P +             + L +++   +     
Sbjct: 6   AHREYQAGDFEAAERHCMQLWR----QEPDNTG-----------VLLLLSSIHFQCRRLD 50

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508
           +S       +  NP   +     G  Y   G+ +EA   +   +
Sbjct: 51  RSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHAL 94

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 2e-07
 Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 15/91 (16%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
            N   ++G  E A   Y K L     V P+               H N+A+ L + G+ +
Sbjct: 312 ANIKREQGNIEEAVRLYRKALE----VFPEFAA-----------AHSNLASVLQQQGKLQ 356

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALG 495
           +++    + +  +P         G     + 
Sbjct: 357 EALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 54.7 bits (131), Expect = 8e-09
 Identities = 16/145 (11%), Positives = 45/145 (31%), Gaps = 16/145 (11%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
                 EG+ + A     + ++     +P+D             L  +    L   G+  
Sbjct: 3   WKNALSEGQLQQALELLIEAIK----ASPKDAS-----------LRSSFIELLCIDGDFE 47

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 524
           ++ E   + +   P ++ G  +      A    ++  +       + ++ E   +     
Sbjct: 48  RADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFN 107

Query: 525 LKKQRQEVESKARKQFKGLFDKKPG 549
           L    Q+ E +  +    + + +  
Sbjct: 108 LSMVSQDYE-QVSELALQIEELRQE 131

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 48.5 bits (115), Expect = 1e-06
 Identities = 23/151 (15%), Positives = 44/151 (29%), Gaps = 13/151 (8%)

Query: 457 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP 516
            L  G+ ++++E   + + A+P                G+FE A       +K+     P
Sbjct: 6   ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 65

Query: 517 DATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGIENQGEDQAAGKNENDDSEQE 576
              + L  L K  Q  +  A+         +             E+        + S   
Sbjct: 66  -GASQLRHLVKAAQARKDFAQGAATAKVLGEN------------EELTKSLVSFNLSMVS 112

Query: 577 SDGDEAQEFHEAAAEAPRKGCSTAFGLPVED 607
            D ++  E      E  ++    A      D
Sbjct: 113 QDYEQVSELALQIEELRQEKGFLANDTSFSD 143

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 1e-08
 Identities = 37/167 (22%), Positives = 70/167 (41%), Gaps = 19/167 (11%)

Query: 392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHL 451
           DG +  AE+++   N  FK   +E A   Y + +                        + 
Sbjct: 4   DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIY---------------YG 48

Query: 452 NVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511
           N +   L+      ++    + ++ +  ++KG YRR  + MALG+F  A RD+E ++KV 
Sbjct: 49  NRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK 108

Query: 512 KSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGIEN 558
               P    A  K ++  + V+ KA ++     + K   +  + IE+
Sbjct: 109 ----PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIES 151

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

 Score = 52.9 bits (126), Expect = 1e-08
 Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 12/122 (9%)

Query: 22  RRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRH 81
           + +K     L+  V+  G G+  P D D V  +     +DG   ++       +G P+  
Sbjct: 100 KGVKTSSTGLVYQVVEAGKGE-APKDSDTVVVNYKGTLIDGKEFDN----SYTRGEPLSF 154

Query: 82  VLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMI 141
            L       G  EG+  + KG      + P++ YG+   P       P +  L F++E++
Sbjct: 155 RLDGVIP--GWTEGLKNIKKGGKIKLVIPPELAYGKAGVP-----GIPPNSTLVFDVELL 207

Query: 142 DF 143
           D 
Sbjct: 208 DV 209

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

 Score = 49.8 bits (118), Expect = 2e-07
 Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 11/113 (9%)

Query: 269 LIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGL 328
           L+ + +  GKGE P D       + V+YKG L++ ++     TR    G+P   S     
Sbjct: 109 LVYQVVEAGKGEAPKDSDT----VVVNYKGTLIDGKEFDNSYTR----GEP--LSFRLDG 158

Query: 329 VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 381
           V  G+   ++ +  G    +  PP+ AY K   P  +P  + + +++ELL  +
Sbjct: 159 VIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVP-GIPPNSTLVFDVELLDVK 210

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Length = 160

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 47.9 bits (113), Expect = 4e-07
 Identities = 24/129 (18%), Positives = 46/129 (35%), Gaps = 7/129 (5%)

Query: 273 RIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEG 332
             +          P  D    VHY G L              +  +    +     V +G
Sbjct: 37  VFQRIARGSGKRAPAIDDKCEVHYTGRLR------DGTVFDSSRERGKPTTFRPNEVIKG 90

Query: 333 FEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDW-TGLSF 391
           +   ++LM  G+   +  P D AY        +P  + +++++EL+  +      T    
Sbjct: 91  WTEALQLMREGDRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELISIKDGGKGRTAEEV 150

Query: 392 DGIMDEAEK 400
           D I+ +AE+
Sbjct: 151 DEILRKAEE 159

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Length = 160

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 41.3 bits (96), Expect = 7e-05
 Identities = 32/166 (19%), Positives = 61/166 (36%), Gaps = 18/166 (10%)

Query: 2   AVEDEDINPQKKKAPS---EDDKRRMKIV--PGSLMKAVMRPGGGDSTPSDGDQVAYHCT 56
           A  +E +N  +K+      E    +   V  P  L+   +  G G   P+  D+   H T
Sbjct: 2   ASHEERMNNYRKRVGRLFMEQKAAQPDAVKLPSGLVFQRIARGSGKRAPAIDDKCEVHYT 61

Query: 57  VRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYG 116
            R  DG + +S+R                ++++ G  E +  M +G+     +   + YG
Sbjct: 62  GRLRDGTVFDSSRERG------KPTTFRPNEVIKGWTEALQLMREGDRWRLFIPYDLAYG 115

Query: 117 EDDCPVAAPSTFPKDEELHFEIEMIDF---AKAKIIADDFGVVKKV 159
                       P    L F++E+I      K +   +   +++K 
Sbjct: 116 VTG----GGGMIPPYSPLEFDVELISIKDGGKGRTAEEVDEILRKA 157

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 2e-06
 Identities = 29/133 (21%), Positives = 57/133 (42%), Gaps = 16/133 (12%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
           ++  +++  GN+    G  + A   Y + +     ++P +              + N +A
Sbjct: 1   EQVNELKEKGNKALSVGNIDDALQCYSEAI----KLDPHNHVL-----------YSNRSA 45

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
              K G+ +K+ E   K +D  P   KG  R+  A   L  FEEA+R +E  +K + ++ 
Sbjct: 46  AYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN- 104

Query: 516 PDATAALSKLKKQ 528
           P     L  ++ +
Sbjct: 105 PQLKEGLQNMEAR 117

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]} Length = 151

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

 Score = 43.7 bits (102), Expect = 9e-06
 Identities = 16/120 (13%), Positives = 40/120 (33%), Gaps = 11/120 (9%)

Query: 47  DGDQVAYHCTVRTLDGVIVESTRSEY---------GGKGIPIRHVLGKSKILLGLLEGIP 97
            G ++      +   G + +++  E            +  P+  V+G+ +++ G  E + 
Sbjct: 4   KGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVL 63

Query: 98  TMLKGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAKIIADDFGVVK 157
            M  G+    K+  +  YG  +         P+D     + E  +            + +
Sbjct: 64  DMEVGDEKTVKIPAEKAYGNRN--EMLIQKIPRDAFKEADFEPEEGMVILAEGIPATITE 121

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]} Length = 151

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

 Score = 36.3 bits (83), Expect = 0.003
 Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 9/74 (12%)

Query: 294 VHYKGMLLN---------EEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGE 344
           V Y G L +         E  K       D + +PLEF  GEG + +GFE  V  M  G+
Sbjct: 10  VDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGD 69

Query: 345 IALVTCPPDYAYDK 358
              V  P + AY  
Sbjct: 70  EKTVKIPAEKAYGN 83

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 1e-05
 Identities = 18/121 (14%), Positives = 42/121 (34%), Gaps = 11/121 (9%)

Query: 407 RLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS 466
            L+ EG     K  ++  L  F+ V                 +  N+      L    ++
Sbjct: 7   SLWNEGVLAADKKDWKGALDAFSAVQDPHSR-----------ICFNIGCMYTILKNMTEA 55

Query: 467 IEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 526
            +A  + ++ +       ++RGM Y    +++ A +D +  +   + ++      L    
Sbjct: 56  EKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQF 115

Query: 527 K 527
           K
Sbjct: 116 K 116

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.003
 Identities = 16/127 (12%), Positives = 37/127 (29%), Gaps = 2/127 (1%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNL-LHLNVAACLLKLGEC 463
           G           A+  + + +    H+     + G ++       L +      L     
Sbjct: 43  GCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG 102

Query: 464 RKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE-PDATAAL 522
            + I+     L       + LY     Y    E+++A+    +   +           A+
Sbjct: 103 NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAM 162

Query: 523 SKLKKQR 529
             + KQ+
Sbjct: 163 ECVWKQK 169

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 2e-05
 Identities = 12/146 (8%), Positives = 34/146 (23%), Gaps = 18/146 (12%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 455
               K    G    K+                      Q                +++  
Sbjct: 118 PCRVKSSQLGIISNKQTHTSAIVKPQSSSCS----YICQH-------------CLVHLGD 160

Query: 456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 515
                 +  ++           P++ +   +  +   + G+       +   + V     
Sbjct: 161 IARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPF- 219

Query: 516 PDATAALSKLKKQRQEVESKARKQFK 541
           P A+  L K   +  E   + + ++ 
Sbjct: 220 PAASTNLQKALSKALESRDEVKTKWG 245

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 42.8 bits (99), Expect = 2e-05
 Identities = 22/150 (14%), Positives = 55/150 (36%), Gaps = 15/150 (10%)

Query: 397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC 456
            A        R    G+++ A A   + +   + + P++  +     G     H  +A  
Sbjct: 8   GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFD---HAGFDAFCHAGLAEA 64

Query: 457 LLKLGECRKSIEACNKVLDANPAHVKG-----------LYRRGMAYMALGEFEEAQRDFE 505
           L  L    +++ + +K L       +            +Y R +A   LG   EA  +F+
Sbjct: 65  LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFK 124

Query: 506 MMMKVDKSSEPDATAALSKLKKQRQEVESK 535
            ++++ +  +   T    ++ +   +  ++
Sbjct: 125 KVVEMIEERK-GETPGKERMMEVAIDRIAQ 153

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 43.8 bits (101), Expect = 5e-05
 Identities = 9/80 (11%), Positives = 22/80 (27%), Gaps = 5/80 (6%)

Query: 449 LHLNVAACLLKLGECRKSIEACNKVLDANP-----AHVKGLYRRGMAYMALGEFEEAQRD 503
            +   A   +  G   ++       L+  P     + +      G      GE   +   
Sbjct: 14  FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLAL 73

Query: 504 FEMMMKVDKSSEPDATAALS 523
            +   ++ +  +    A  S
Sbjct: 74  MQQTEQMARQHDVWHYALWS 93

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 40.6 bits (94), Expect = 1e-04
 Identities = 17/122 (13%), Positives = 30/122 (24%), Gaps = 7/122 (5%)

Query: 396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLL------ 449
                 +  G      G+FE A       LR++      D  + +        L      
Sbjct: 9   GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVL 68

Query: 450 -HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 508
            H   A   +  G     I     +   +P       +   AY       +A   +  + 
Sbjct: 69  AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 128

Query: 509 KV 510
             
Sbjct: 129 TT 130

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.5 bits (96), Expect = 2e-04
 Identities = 11/103 (10%), Positives = 26/103 (25%)

Query: 409 FKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIE 468
            +    +  +        D N  +        +   +              L    +S +
Sbjct: 204 PENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCK 263

Query: 469 ACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 511
              ++   N   +  +     A   L   +E  + F  +  VD
Sbjct: 264 ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 306

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 12/92 (13%)

Query: 452 NVAACLLK---LGECRKSIEACNKVLDANPAHVK-GLYRRGMAYMALGEFEEAQRDFEMM 507
           N A  L+K   + + R  ++    +     +  +  LY   +    LGE+  A+R  + +
Sbjct: 40  NYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 99

Query: 508 MKVDKSSEPDATAALSKLKKQRQEVESKARKQ 539
            +     E +     + LK     VE K +K+
Sbjct: 100 FEH----ERNNKQVGA-LKSM---VEDKIQKE 123

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 8e-04
 Identities = 12/89 (13%), Positives = 32/89 (35%), Gaps = 7/89 (7%)

Query: 427 DFNHVNP--QDDEEGKVFV----GKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 480
           ++  ++P  Q+D    V       K   ++    A L +     ++ +     ++ N A+
Sbjct: 17  EWADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN 76

Query: 481 VKGLYRRGMAYMALGE-FEEAQRDFEMMM 508
               + R +   +L +   E       ++
Sbjct: 77  YTVWHFRRVLLKSLQKDLHEEMNYITAII 105

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 10/71 (14%), Positives = 25/71 (35%)

Query: 461 GECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATA 520
               +                +  +  G  Y++LG+ + A   F++ +  +  +  +   
Sbjct: 189 TLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRY 248

Query: 521 ALSKLKKQRQE 531
           AL +L    Q+
Sbjct: 249 ALLELSLLGQD 259

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 0.003
 Identities = 14/105 (13%), Positives = 33/105 (31%), Gaps = 15/105 (14%)

Query: 405 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 464
           G R  +EG    A   +E  ++     +P+  E               +     +  +  
Sbjct: 26  GLRRLQEGDLPNAVLLFEAAVQ----QDPKHME-----------AWQYLGTTQAENEQEL 70

Query: 465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 509
            +I A  + L+  P +   L    +++       +A       ++
Sbjct: 71  LAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR 115

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	626
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.92
d1r9ha_	118	FKB-6, N-terminal domain {Caenorhabditis elegans [	99.91
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.91
d1q1ca1	120	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.91
d1yata_	113	Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc	99.9
d2ppna1	107	FK-506 binding protein (FKBP12), an immunophilin {	99.9
d1kt1a2	111	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.9
d1r9ha_	118	FKB-6, N-terminal domain {Caenorhabditis elegans [	99.89
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.89
d1fd9a_	204	Macrophage infectivity potentiator protein (MIP) {	99.88
d1q1ca1	120	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.88
d1pbka_	116	FKBP25 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1q6ha_	210	Peptidyl-prolyl cis-trans isomerase FkpA {Escheric	99.87
d2ppna1	107	FK-506 binding protein (FKBP12), an immunophilin {	99.87
d1jvwa_	160	Macrophage infectivity potentiator protein (MIP) {	99.86
d1pbka_	116	FKBP25 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1yata_	113	Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc	99.86
d1kt1a2	111	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.86
d1u79a_	125	FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId:	99.86
d1kt1a3	115	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.84
d1q6ha_	210	Peptidyl-prolyl cis-trans isomerase FkpA {Escheric	99.83
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.82
d1kt1a3	115	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.82
d1fd9a_	204	Macrophage infectivity potentiator protein (MIP) {	99.82
d1q1ca2	117	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.79
d1q1ca2	117	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.79
d1u79a_	125	FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId:	99.78
d1jvwa_	160	Macrophage infectivity potentiator protein (MIP) {	99.78
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.75
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.68
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.65
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.49
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.44
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.41
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.41
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.41
d1hxva_	85	Trigger factor PPIase domain {Mycoplasma genitaliu	99.39
d1ix5a_	151	Archaeal FKBP {Archaeon Methanococcus thermolithot	99.38
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.36
d1ix5a_	151	Archaeal FKBP {Archaeon Methanococcus thermolithot	99.33
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.22
d1hxva_	85	Trigger factor PPIase domain {Mycoplasma genitaliu	99.2
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.19
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.18
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.16
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.14
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.14
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.13
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.12
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.09
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.09
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.08
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.06
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.0
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.95
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.95
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.92
d1l1pa_	106	Trigger factor PPIase domain {Escherichia coli [Ta	98.9
d1t11a3	113	Trigger factor PPIase domain {Vibrio cholerae [Tax	98.82
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.75
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.71
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.66
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.64
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.6
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.59
d1l1pa_	106	Trigger factor PPIase domain {Escherichia coli [Ta	98.57
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.47
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.47
d1t11a3	113	Trigger factor PPIase domain {Vibrio cholerae [Tax	98.45
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.43
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.42
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.37
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.27
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.16
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.11
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.05
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.0
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.91
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.74
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.73
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.67
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.49
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.33
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.2
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.94
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	96.76
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.41
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	89.41
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	83.38
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	81.85

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.92  E-value=1.7e-24  Score=200.99  Aligned_cols=163  Identities=29%  Similarity=0.454  Sum_probs=152.0

Q ss_pred             CCCCCChhhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHH
Q 006908          385 DWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR  464 (626)
Q Consensus       385 ~~~~~~~~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~  464 (626)
                      +.|.|+.+|+++.+..+++.||.+|+.|+|.+|+..|++||.+++.......++......+...+|+|+|.||+++++|.
T Consensus         2 e~~~m~~~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~   81 (168)
T d1kt1a1           2 ESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYT   81 (168)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             CcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcc
Confidence            46789999999999999999999999999999999999999988876666666666777888899999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 006908          465 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLF  544 (626)
Q Consensus       465 ~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  544 (626)
                      +|+.+|+++|.++|+++++||++|.+|..+|+|++|+.+|++|++++|+| +.+...+..+...+.++.+++++.|++||
T Consensus        82 ~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n-~~~~~~l~~~~~~~~~~~e~~kk~~~~~f  160 (168)
T d1kt1a1          82 KAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN-KAARLQIFMCQKKAKEHNERDRRTYANMF  160 (168)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998 78999999999999999999999999999


Q ss_pred             cCCC
Q 006908          545 DKKP  548 (626)
Q Consensus       545 ~~~~  548 (626)
                      .+..
T Consensus       161 ~~~~  164 (168)
T d1kt1a1         161 KKFA  164 (168)
T ss_dssp             HHHH
T ss_pred             hhhh
Confidence            8643

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.91  E-value=1.1e-24  Score=188.56  Aligned_cols=110  Identities=28%  Similarity=0.561  Sum_probs=104.7

Q ss_pred             cCCceEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCCCcEEE
Q 006908           27 VPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSM  106 (626)
Q Consensus        27 ~~~gv~~~i~~~G~G~~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge~~~  106 (626)
                      +|+||.|+++++|+|..+|..||.|++||++++.||++|+||+.    .+.|+.|.+|.+++++||+++|.+|++|++++
T Consensus         8 ~d~Gl~~~il~~G~G~~~p~~gd~V~v~y~~~l~dG~v~dss~~----~~~p~~f~~g~~~vi~G~~~~l~~M~~Ge~~~   83 (118)
T d1r9ha_           8 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRD----RGDQFSFNLGRGNVIKGWDLGVATMTKGEVAE   83 (118)
T ss_dssp             CCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHH----HTSCEEEETTTTSSCHHHHHHHTTCCBTCEEE
T ss_pred             CCCCEEEEEEECcCCCCCCCCCCEEEEEEEEEEcCCCEEEEccc----cceeeeeeccCcceeeeeeeeeeeecCCceEE
Confidence            67899999999999987799999999999999999999999997    77899999999999999999999999999999


Q ss_pred             EEeeccccccCCCCCCCCCCCCCCCceEEEEEEeeeec
Q 006908          107 FKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA  144 (626)
Q Consensus       107 ~~ip~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~~  144 (626)
                      |+|||++|||..+++    +.|||+++|+|+|+|++|.
T Consensus        84 ~~ipp~laYG~~g~~----~~IPp~s~l~f~IeLl~f~  117 (118)
T d1r9ha_          84 FTIRSDYGYGDAGSP----PKIPGGATLIFEVELFEWS  117 (118)
T ss_dssp             EEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEE
T ss_pred             EEECHHHhCCcCCCC----CccCcCCcEEEEEEEEEEe
Confidence            999999999999985    6899999999999999985

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7.6e-24  Score=196.89  Aligned_cols=161  Identities=27%  Similarity=0.455  Sum_probs=150.9

Q ss_pred             CCCChhhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHH
Q 006908          387 TGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS  466 (626)
Q Consensus       387 ~~~~~~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A  466 (626)
                      |+|+.+++++.|..+++.|+.+|++|+|++|+..|++||.+++........+......+...+|+|+|.||+++++|.+|
T Consensus         2 ~~~~~~ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A   81 (170)
T d1p5qa1           2 WEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAA   81 (170)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccc
Confidence            67999999999999999999999999999999999999998876666666666777888889999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC
Q 006908          467 IEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDK  546 (626)
Q Consensus       467 ~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  546 (626)
                      +.+|.++|.++|+++++|+++|.||..+|+|++|+.+|++|++++|+| +.+...+..+..++.++..+++..|++||++
T Consensus        82 ~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n-~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~  160 (170)
T d1p5qa1          82 IESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN-KAAKTQLAVCQQRIRRQLAREKKLYANMFER  160 (170)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998 7899999999999999999999999999987


Q ss_pred             CC
Q 006908          547 KP  548 (626)
Q Consensus       547 ~~  548 (626)
                      ..
T Consensus       161 ~~  162 (170)
T d1p5qa1         161 LA  162 (170)
T ss_dssp             HH
T ss_pred             Hh
Confidence            53

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.5e-24  Score=185.91  Aligned_cols=110  Identities=31%  Similarity=0.492  Sum_probs=104.5

Q ss_pred             cCCceEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCCCcEEE
Q 006908           27 VPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSM  106 (626)
Q Consensus        27 ~~~gv~~~i~~~G~G~~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge~~~  106 (626)
                      +|+||.|+++++|.|...|..||.|+|||++++.||++|+||++    .+.|+.|.+|.+++++||+++|.+|++|++++
T Consensus         9 ~d~gv~~~i~~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~~----~~~p~~f~~g~~~~i~G~~~~l~~M~~Ge~~~   84 (120)
T d1q1ca1           9 QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLD----RKDKFSFDLGKGEVIKAWDIAIATMKVGEVCH   84 (120)
T ss_dssp             CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTT----SSSCEEEETTTTSSCHHHHHHHTTCCTTCEEE
T ss_pred             CCCCEEEEEEEcccCCcCCCCCCEEEEEEEEEEcCCCEEEeccc----cccceeeecCCCceeeeeeeeeccccCCcEEE
Confidence            46999999999999987799999999999999999999999997    77899999999999999999999999999999


Q ss_pred             EEeeccccccCCCCCCCCCCCCCCCceEEEEEEeeeec
Q 006908          107 FKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA  144 (626)
Q Consensus       107 ~~ip~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~~  144 (626)
                      |+|||+++||..+++    +.|||+++|+|+|+|++|.
T Consensus        85 ~~ip~~laYG~~g~~----~~IPp~s~LifeIeLl~v~  118 (120)
T d1q1ca1          85 ITCKPEYAYGSAGSP----PKIPPNATLVFEVELFEFK  118 (120)
T ss_dssp             EEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEE
T ss_pred             EEECHHHhCCCcCCC----CCCCcCCcEEEEEEEEEEe
Confidence            999999999999875    7899999999999999985

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=1.3e-23  Score=180.87  Aligned_cols=110  Identities=25%  Similarity=0.519  Sum_probs=104.5

Q ss_pred             ecCCceEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCCCcEE
Q 006908           26 IVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVS  105 (626)
Q Consensus        26 ~~~~gv~~~i~~~G~G~~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge~~  105 (626)
                      +.++||+++++++|+|...|+.||.|+|||++++.||++|+++++    ...|+.|.++.+++++||+++|.+|++|+++
T Consensus         3 ~~d~gl~~~~l~~G~G~~~P~~gd~V~v~y~~~~~dG~~~ds~~~----~~~~~~~~~~~~~~i~G~~~~l~~M~~G~~~   78 (113)
T d1yata_           3 VIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVD----RGSPFQCNIGVGQVIKGWDVGIPKLSVGEKA   78 (113)
T ss_dssp             ECGGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEESTT----TTCCEEEETTSSSSCHHHHHHGGGCCTTCEE
T ss_pred             CccCCcEEEEEECccCCcCCCCCCEEEEEEEEEEecCcEEecccc----CCceEeeeeccCceeeehhhhcccccCCCEE
Confidence            568999999999999987799999999999999999999999987    6789999999999999999999999999999


Q ss_pred             EEEeeccccccCCCCCCCCCCCCCCCceEEEEEEeeee
Q 006908          106 MFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF  143 (626)
Q Consensus       106 ~~~ip~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~  143 (626)
                      +|.|||++|||..|.+    +.||++++|+|+|+|+++
T Consensus        79 ~~~iP~~laYG~~g~~----~~IP~~s~Lif~ieLl~I  112 (113)
T d1yata_          79 RLTIPGPYAYGPRGFP----GLIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             EEEECGGGTTTTTCBT----TTBCTTCCEEEEEEEEEE
T ss_pred             EEEechHHeecCcCCC----CccCcCCeEEEEEEEEEe
Confidence            9999999999999985    679999999999999987

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.2e-23  Score=178.97  Aligned_cols=107  Identities=26%  Similarity=0.553  Sum_probs=101.4

Q ss_pred             ceEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCCCcEEEEEe
Q 006908           30 SLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKM  109 (626)
Q Consensus        30 gv~~~i~~~G~G~~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge~~~~~i  109 (626)
                      ||.|+++++|+|...|..||.|++||++++.||++|++|++    .+.|+.|.+|.+++++||+++|.+|++|++++|+|
T Consensus         1 Gv~~~~l~~G~G~~~p~~gd~V~v~y~g~l~dG~~~d~s~~----~~~p~~~~~g~~~~i~G~~~~l~~M~~Ge~~~~~i   76 (107)
T d2ppna1           1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRD----RNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTI   76 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHH----HTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEE
T ss_pred             CcEEEEEECcCCccCCCCCCEEEEEEEEEecCCeEEEeeec----cceeeeEeeCcchhheeehhhhcCccCCCEEEEEE
Confidence            79999999999987789999999999999999999999987    67899999999999999999999999999999999


Q ss_pred             eccccccCCCCCCCCCCCCCCCceEEEEEEeeeec
Q 006908          110 KPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA  144 (626)
Q Consensus       110 p~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~~  144 (626)
                      ||++|||..+.+    +.||||++|+|+|+|+++.
T Consensus        77 p~~laYG~~g~~----~~IPp~s~lif~ieL~~vk  107 (107)
T d2ppna1          77 SPDYAYGATGHP----GIIPPHATLVFDVELLKLE  107 (107)
T ss_dssp             CGGGTTTTTCBT----TTBCTTCCEEEEEEEEEEC
T ss_pred             CHHHhCCCCCCC----CCCCcCCeEEEEEEEEEEC
Confidence            999999999875    6799999999999999873

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.90  E-value=2.2e-24  Score=184.83  Aligned_cols=110  Identities=30%  Similarity=0.535  Sum_probs=85.4

Q ss_pred             cCCceEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCCCcEEE
Q 006908           27 VPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSM  106 (626)
Q Consensus        27 ~~~gv~~~i~~~G~G~~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge~~~  106 (626)
                      +++||+|+++++|.|...|..||.|+|||++++.||++|+||++    .+.|+.|.+|.+++++||+++|.+|++||+++
T Consensus         2 ~d~Gi~~~i~~~G~g~~~P~~gd~V~v~y~~~l~dG~~~dss~~----~~~p~~f~lg~~~~i~G~~~~l~~M~~Ge~~~   77 (111)
T d1kt1a2           2 KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHD----RNEPFVFSIGKGQVIKAWDIGVATMKKGEICH   77 (111)
T ss_dssp             CSCSCEEEC----CCSCCCCTTCEEEEECCCCSCC----------------CEEEETTSSSSCHHHHHSTTTCCTTCCEE
T ss_pred             CCCCeEEEEEEcccCCcCCCCCCEEEEEEEEEECCCCEEEEEEe----cceeeeeecCCCcEEeeeeeeehhccCCcEEE
Confidence            57999999999999987799999999999999999999999987    78899999999999999999999999999999


Q ss_pred             EEeeccccccCCCCCCCCCCCCCCCceEEEEEEeeeec
Q 006908          107 FKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA  144 (626)
Q Consensus       107 ~~ip~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~~  144 (626)
                      |+|||++|||..+.+    +.|||+++|+|+|+|+++.
T Consensus        78 ~~ip~~layG~~g~~----~~IPp~s~lif~ieLl~ik  111 (111)
T d1kt1a2          78 LLCKPEYAYGATGSL----PKIPSNATLFFEVELLDFK  111 (111)
T ss_dssp             EEC----CCCTTTCT----TTSCTTCCCEEEEEEEEEE
T ss_pred             EEECHHHhCCCCCCC----CcCCcCCeEEEEEEEEEEC
Confidence            999999999999875    6899999999999999973

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.89  E-value=7e-23  Score=177.14  Aligned_cols=109  Identities=32%  Similarity=0.461  Sum_probs=102.2

Q ss_pred             cccccEEEEEeecCCCcCCCCCCCeEEEEEEEEeCCCcEEEecC-CCccEEEEcCCCCccchHHHhhccCCCCcEEEEEE
Q 006908          150 ADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYV  228 (626)
Q Consensus       150 ~~D~~v~~~i~~~G~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v  228 (626)
                      ..|+|+.++++++|.|+..|+.||.|+|||++++.||++|+|+. .+.|++|.+|.+++++||++||.+|++||+++|+|
T Consensus         7 ~~d~Gl~~~il~~G~G~~~p~~gd~V~v~y~~~l~dG~v~dss~~~~~p~~f~~g~~~vi~G~~~~l~~M~~Ge~~~~~i   86 (118)
T d1r9ha_           7 KKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTI   86 (118)
T ss_dssp             TCCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTTTSSCHHHHHHHTTCCBTCEEEEEE
T ss_pred             cCCCCEEEEEEECcCCCCCCCCCCEEEEEEEEEEcCCCEEEEccccceeeeeeccCcceeeeeeeeeeeecCCceEEEEE
Confidence            46899999999999998889999999999999999999999874 57999999999999999999999999999999999


Q ss_pred             eCCccCCCCCC-CCCCCcceEEEEEEEeeEE
Q 006908          229 TSQYLTPSPLM-PVVEGCEEVHFEVELVHLI  258 (626)
Q Consensus       229 ~~~~~~g~~~~-~~ip~~~~l~~~v~l~~~~  258 (626)
                      ||++|||..+. +.||++++|+|+|+|++|.
T Consensus        87 pp~laYG~~g~~~~IPp~s~l~f~IeLl~f~  117 (118)
T d1r9ha_          87 RSDYGYGDAGSPPKIPGGATLIFEVELFEWS  117 (118)
T ss_dssp             CGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             CHHHhCCcCCCCCccCcCCcEEEEEEEEEEe
Confidence            99999998765 5799999999999999984

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.89  E-value=3.2e-22  Score=182.40  Aligned_cols=148  Identities=26%  Similarity=0.320  Sum_probs=131.5

Q ss_pred             CCCCCCChhhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChh-HHHHHhhhhhHHHHHHHHHHHHcCC
Q 006908          384 KDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE-EGKVFVGKRNLLHLNVAACLLKLGE  462 (626)
Q Consensus       384 ~~~~~~~~~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~e-e~~~~~~~~~~~~~Nla~~~~kl~~  462 (626)
                      ++.|.|+.+++++.|..+++.||.+|+.|+|.+|+..|++||.++.......+. .......+...+|+|+|.||+++++
T Consensus         3 ~~~~~~~~~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~   82 (153)
T d2fbna1           3 KSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD   82 (153)
T ss_dssp             CSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcc
Confidence            456789999999999999999999999999999999999999977655443332 2344556678899999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 006908          463 CRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEV  532 (626)
Q Consensus       463 ~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~  532 (626)
                      |.+|+.+|.+||+++|.+++|||++|.+|..+|+|++|+.+|++|++++|+| ..+...+..+.+++++.
T Consensus        83 ~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n-~~~~~~l~~~~~kl~~~  151 (153)
T d2fbna1          83 YPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN-LDIRNSYELCVNKLKEA  151 (153)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998 68888898888777654

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

Probab=99.88  E-value=9.1e-23  Score=194.22  Aligned_cols=113  Identities=26%  Similarity=0.439  Sum_probs=105.3

Q ss_pred             cCceecCCceEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCC
Q 006908           22 RRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLK  101 (626)
Q Consensus        22 ~~~~~~~~gv~~~i~~~G~G~~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~  101 (626)
                      .+++++++||+|+++++|+|.. |..||.|.|||++++.||++|++|+.    .+.|+.|.+  +++++||+++|.+|++
T Consensus        91 ~~v~~~~sGl~y~v~~~G~G~~-p~~~d~v~v~y~g~l~dg~~f~~s~~----~~~p~~~~~--~~~i~G~~e~l~~m~~  163 (204)
T d1fd9a_          91 PGVVVLPSGLQYKVINSGNGVK-PGKSDTVTVEYTGRLIDGTVFDSTEK----TGKPATFQV--SQVIPGWTEALQLMPA  163 (204)
T ss_dssp             TTEEECTTSCEEEEEECCCSCC-CCTTCEEEEEEEEEETTSCEEEEHHH----HCSCEEEEG--GGSCHHHHHHHTTCCT
T ss_pred             CceEEecCccEEEEeecCCCcc-cCCCCEEEEEEEEEECCCCEeccccc----CCCCceecC--CccchhHHHHhcCCCC
Confidence            4678899999999999999987 99999999999999999999999987    678998887  5799999999999999


Q ss_pred             CcEEEEEeeccccccCCCCCCCCCCCCCCCceEEEEEEeeeecc
Q 006908          102 GEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAK  145 (626)
Q Consensus       102 Ge~~~~~ip~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~~~  145 (626)
                      |++++|+|||+++||..|++    +.||||++|+|+|+|++|..
T Consensus       164 G~~~~~~iP~~laYG~~g~~----~~Ipp~s~l~feveL~~i~k  203 (204)
T d1fd9a_         164 GSTWEIYVPSGLAYGPRSVG----GPIGPNETLIFKIHLISVKK  203 (204)
T ss_dssp             TCEEEEEECGGGTTTTCCCS----SSCCTTCCEEEEEEEEEEEC
T ss_pred             CCEEEEEEChHHCcCCCCCC----CCcCcCCcEEEEEEEEEEEc
Confidence            99999999999999999985    67999999999999999863

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.6e-22  Score=173.91  Aligned_cols=109  Identities=29%  Similarity=0.328  Sum_probs=102.2

Q ss_pred             cccccEEEEEeecCCCcCCCCCCCeEEEEEEEEeCCCcEEEecC-CCccEEEEcCCCCccchHHHhhccCCCCcEEEEEE
Q 006908          150 ADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYV  228 (626)
Q Consensus       150 ~~D~~v~~~i~~~G~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v  228 (626)
                      ..|.++.|.++++|.|...|..||.|+|||++++.||++|+|+. .+.|+.|.+|.+++++||++||.+|++||+++|+|
T Consensus         8 ~~d~gv~~~i~~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~~~~~p~~f~~g~~~~i~G~~~~l~~M~~Ge~~~~~i   87 (120)
T d1q1ca1           8 KQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITC   87 (120)
T ss_dssp             SCSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTTSSSCEEEETTTTSSCHHHHHHHTTCCTTCEEEEEE
T ss_pred             CCCCCEEEEEEEcccCCcCCCCCCEEEEEEEEEEcCCCEEEeccccccceeeecCCCceeeeeeeeeccccCCcEEEEEE
Confidence            46899999999999998889999999999999999999999885 57999999999999999999999999999999999


Q ss_pred             eCCccCCCCCC-CCCCCcceEEEEEEEeeEE
Q 006908          229 TSQYLTPSPLM-PVVEGCEEVHFEVELVHLI  258 (626)
Q Consensus       229 ~~~~~~g~~~~-~~ip~~~~l~~~v~l~~~~  258 (626)
                      ||++|||..+. +.||++++|+|+|+|+++.
T Consensus        88 p~~laYG~~g~~~~IPp~s~LifeIeLl~v~  118 (120)
T d1q1ca1          88 KPEYAYGSAGSPPKIPPNATLVFEVELFEFK  118 (120)
T ss_dssp             CGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             CHHHhCCCcCCCCCCCcCCcEEEEEEEEEEe
Confidence            99999998754 6799999999999999985

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.2e-22  Score=173.90  Aligned_cols=111  Identities=27%  Similarity=0.506  Sum_probs=99.9

Q ss_pred             ceEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEeeccCC---CCCCcceEEEeCCCccchhHHhhcCCCCCCcEEE
Q 006908           30 SLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEY---GGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSM  106 (626)
Q Consensus        30 gv~~~i~~~G~G~~~p~~gd~V~v~y~~~~~dG~~~~st~~~~---~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge~~~  106 (626)
                      .+.|+|+++|+|..+|+.||.|+|||++++.||++|+||++..   .....|+.|.+|.+++++||+++|.+|++||+++
T Consensus         2 ~~~k~vl~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~~~~~~~~~~~~p~~f~lg~~~~i~Gl~~~v~~M~~Ge~~~   81 (116)
T d1pbka_           2 KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKAR   81 (116)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCSSCCTTTSSCCEEEETTTTSSCHHHHHHHTTCCTTCEEE
T ss_pred             cceEEEEecCCCCCCCCCCCEEEEEEEEEECCCCEeecccccccccccCCCceeeeecccccccchheechhhcCCcEEE
Confidence            4689999999998779999999999999999999999997532   2245799999999999999999999999999999


Q ss_pred             EEeeccccccCCCCCCCCCCCCCCCceEEEEEEeeee
Q 006908          107 FKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDF  143 (626)
Q Consensus       107 ~~ip~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~  143 (626)
                      |+|||++|||..+.+   +..|||+++|+|+|+|+++
T Consensus        82 ~~ip~~~ayG~~g~~---~~~Ipp~s~L~feieLl~v  115 (116)
T d1pbka_          82 LEIEPEWAYGKKGQP---DAKIPPNAKLTFEVELVDI  115 (116)
T ss_dssp             EEECGGGTTTTTCBG---GGTBCTTCCEEEEEEEEEE
T ss_pred             EEECHHHhCCccCCC---CCCcCcCCeEEEEEEEEEE
Confidence            999999999998874   2469999999999999987

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=1.9e-22  Score=192.67  Aligned_cols=112  Identities=24%  Similarity=0.512  Sum_probs=104.7

Q ss_pred             ccCceecCCceEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCC
Q 006908           21 KRRMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTML  100 (626)
Q Consensus        21 ~~~~~~~~~gv~~~i~~~G~G~~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~  100 (626)
                      ....+.+++||.|+++++|+|.. |..||.|.|||++++.||++|+||+.    .+.|+.|.+  +++|+||+++|.+|+
T Consensus        99 ~~~v~~~~sGl~y~v~~~G~G~~-p~~gd~v~v~y~g~l~dG~~fd~s~~----~~~p~~~~~--~~vi~g~~e~l~~m~  171 (210)
T d1q6ha_          99 EKGVKTSSTGLVYQVVEAGKGEA-PKDSDTVVVNYKGTLIDGKEFDNSYT----RGEPLSFRL--DGVIPGWTEGLKNIK  171 (210)
T ss_dssp             STTEEECTTSCEEEEEECCSSCC-CCTTCEEEEEEEEEETTSCEEEEGGG----GTSCEEEEG--GGSCHHHHHHGGGSC
T ss_pred             cCceEEccCceEEEEeeCCCCCC-CCCCceEEEEEEEEEcCCCEEeeccc----CCCcceecc--CccchhHHHHHhhcc
Confidence            45678899999999999999987 99999999999999999999999997    789999999  479999999999999


Q ss_pred             CCcEEEEEeeccccccCCCCCCCCCCCCCCCceEEEEEEeeeec
Q 006908          101 KGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFA  144 (626)
Q Consensus       101 ~Ge~~~~~ip~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~~  144 (626)
                      +|++++|+|||+++||..|.     +.||||++|+|+|+|++|+
T Consensus       172 ~G~k~~~~iP~~laYG~~g~-----~~Ippns~Lvfevel~~ik  210 (210)
T d1q6ha_         172 KGGKIKLVIPPELAYGKAGV-----PGIPPNSTLVFDVELLDVK  210 (210)
T ss_dssp             TTCEEEEEECGGGTTTTTCB-----TTBCTTCCEEEEEEEEEEC
T ss_pred             CCCEEEEEECHHHCcCCCCC-----CCCCcCCcEEEEEEEEEEC
Confidence            99999999999999999997     3599999999999999973

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=6.6e-22  Score=168.15  Aligned_cols=104  Identities=27%  Similarity=0.439  Sum_probs=97.4

Q ss_pred             cEEEEEeecCCCcCCCCCCCeEEEEEEEEeCCCcEEEecC-CCccEEEEcCCCCccchHHHhhccCCCCcEEEEEEeCCc
Q 006908          154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQY  232 (626)
Q Consensus       154 ~v~~~i~~~G~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~~~~  232 (626)
                      |+.++++++|.|...|+.||.|++||++++.||++|+++. ++.|++|.+|.+++++||++||.+|++|++++|+|||++
T Consensus         1 Gv~~~~l~~G~G~~~p~~gd~V~v~y~g~l~dG~~~d~s~~~~~p~~~~~g~~~~i~G~~~~l~~M~~Ge~~~~~ip~~l   80 (107)
T d2ppna1           1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY   80 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECGGG
T ss_pred             CcEEEEEECcCCccCCCCCCEEEEEEEEEecCCeEEEeeeccceeeeEeeCcchhheeehhhhcCccCCCEEEEEECHHH
Confidence            6889999999997789999999999999999999999874 589999999999999999999999999999999999999


Q ss_pred             cCCCCCC-CCCCCcceEEEEEEEeeE
Q 006908          233 LTPSPLM-PVVEGCEEVHFEVELVHL  257 (626)
Q Consensus       233 ~~g~~~~-~~ip~~~~l~~~v~l~~~  257 (626)
                      |||..+. +.||+|++|+|+|+|+++
T Consensus        81 aYG~~g~~~~IPp~s~lif~ieL~~v  106 (107)
T d2ppna1          81 AYGATGHPGIIPPHATLVFDVELLKL  106 (107)
T ss_dssp             TTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred             hCCCCCCCCCCCcCCeEEEEEEEEEE
Confidence            9998754 568999999999999987

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.86  E-value=6e-22  Score=180.51  Aligned_cols=115  Identities=23%  Similarity=0.412  Sum_probs=103.9

Q ss_pred             CceecCCceEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCCC
Q 006908           23 RMKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKG  102 (626)
Q Consensus        23 ~~~~~~~gv~~~i~~~G~G~~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~G  102 (626)
                      ..+++|+||+|+++++|.|...|..||.|.|||++++.||++|++++.    ...|  |.++.+.+++||+++|.+|++|
T Consensus        28 ~~~~~~sGl~y~il~~G~G~~~P~~gd~V~v~Y~g~l~dG~~fds~~~----~~~p--~~~~~~~~i~G~~e~l~~M~~G  101 (160)
T d1jvwa_          28 DAVKLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRE----RGKP--TTFRPNEVIKGWTEALQLMREG  101 (160)
T ss_dssp             TEEECTTSCEEEEEECCCCSBCCCTTCCEEEEEEEECTTSCEEEEHHH----HTSC--EEECGGGSCHHHHHHHTTCCTT
T ss_pred             CCEECCCCCEEEEEECcccccCCCCCcceEEEEEEEEccCCeeeeecc----ccCc--cccCccccchhHHHHhcCcccc
Confidence            467799999999999999987799999999999999999999999986    4556  5556689999999999999999


Q ss_pred             cEEEEEeeccccccCCCCCCCCCCCCCCCceEEEEEEeeeecccc
Q 006908          103 EVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKAK  147 (626)
Q Consensus       103 e~~~~~ip~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~~~~~  147 (626)
                      ++++|+|||++|||..|.+    +.||++++|+|+|+|++|.+..
T Consensus       102 e~~~v~iPp~laYG~~g~~----~~IPp~s~LifeIeLl~i~~~~  142 (160)
T d1jvwa_         102 DRWRLFIPYDLAYGVTGGG----GMIPPYSPLEFDVELISIKDGG  142 (160)
T ss_dssp             CEEEEEECGGGTTTTTCSS----SSSCTTCCEEEEEEEEEEGGGC
T ss_pred             ceeEEEeCHHHCcCCCCCC----CCcCcCCcEEEEEEEEEEecCC
Confidence            9999999999999998874    6799999999999999997544

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.4e-21  Score=168.74  Aligned_cols=104  Identities=23%  Similarity=0.379  Sum_probs=96.2

Q ss_pred             cEEEEEeecCCCcCCCCCCCeEEEEEEEEeCCCcEEEecC--------CCccEEEEcCCCCccchHHHhhccCCCCcEEE
Q 006908          154 GVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR--------EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAV  225 (626)
Q Consensus       154 ~v~~~i~~~G~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~--------~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~  225 (626)
                      .+.|.|+++|.|...|+.||.|+|||++++.||++|+|+.        .+.|+.|.+|.+++++||++||.+|++||+++
T Consensus         2 ~~~k~vl~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~~~~~~~~~~~~p~~f~lg~~~~i~Gl~~~v~~M~~Ge~~~   81 (116)
T d1pbka_           2 KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKAR   81 (116)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCSSCCTTTSSCCEEEETTTTSSCHHHHHHHTTCCTTCEEE
T ss_pred             cceEEEEecCCCCCCCCCCCEEEEEEEEEECCCCEeecccccccccccCCCceeeeecccccccchheechhhcCCcEEE
Confidence            4689999999998889999999999999999999999873        35799999999999999999999999999999


Q ss_pred             EEEeCCccCCCCCC--CCCCCcceEEEEEEEeeE
Q 006908          226 IYVTSQYLTPSPLM--PVVEGCEEVHFEVELVHL  257 (626)
Q Consensus       226 ~~v~~~~~~g~~~~--~~ip~~~~l~~~v~l~~~  257 (626)
                      |+|||++|||+.+.  ..||++++|+|+|+|+++
T Consensus        82 ~~ip~~~ayG~~g~~~~~Ipp~s~L~feieLl~v  115 (116)
T d1pbka_          82 LEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVDI  115 (116)
T ss_dssp             EEECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEE
T ss_pred             EEECHHHhCCccCCCCCCcCcCCeEEEEEEEEEE
Confidence            99999999998765  469999999999999986

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=1.9e-21  Score=167.14  Aligned_cols=107  Identities=22%  Similarity=0.314  Sum_probs=100.0

Q ss_pred             ccccEEEEEeecCCCcCCCCCCCeEEEEEEEEeCCCcEEEecC-CCccEEEEcCCCCccchHHHhhccCCCCcEEEEEEe
Q 006908          151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT  229 (626)
Q Consensus       151 ~D~~v~~~i~~~G~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~  229 (626)
                      .|+++.+.++++|.|...|+.||.|.|||++++.||++|+++. .+.|+.|.++.+++++||++||.+|++|++++|+||
T Consensus         4 ~d~gl~~~~l~~G~G~~~P~~gd~V~v~y~~~~~dG~~~ds~~~~~~~~~~~~~~~~~i~G~~~~l~~M~~G~~~~~~iP   83 (113)
T d1yata_           4 IEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTIP   83 (113)
T ss_dssp             CGGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEESTTTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEEEEC
T ss_pred             ccCCcEEEEEECccCCcCCCCCCEEEEEEEEEEecCcEEeccccCCceEeeeeccCceeeehhhhcccccCCCEEEEEec
Confidence            4789999999999997789999999999999999999999875 579999999999999999999999999999999999


Q ss_pred             CCccCCCCCC-CCCCCcceEEEEEEEeeE
Q 006908          230 SQYLTPSPLM-PVVEGCEEVHFEVELVHL  257 (626)
Q Consensus       230 ~~~~~g~~~~-~~ip~~~~l~~~v~l~~~  257 (626)
                      |++|||..+. +.||++++|+|+|+|+++
T Consensus        84 ~~laYG~~g~~~~IP~~s~Lif~ieLl~I  112 (113)
T d1yata_          84 GPYAYGPRGFPGLIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred             hHHeecCcCCCCccCcCCeEEEEEEEEEe
Confidence            9999998765 568999999999999986

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.86  E-value=1.9e-22  Score=172.67  Aligned_cols=108  Identities=31%  Similarity=0.457  Sum_probs=83.6

Q ss_pred             ccccEEEEEeecCCCcCCCCCCCeEEEEEEEEeCCCcEEEecC-CCccEEEEcCCCCccchHHHhhccCCCCcEEEEEEe
Q 006908          151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVT  229 (626)
Q Consensus       151 ~D~~v~~~i~~~G~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~  229 (626)
                      .|.|+.++++++|.|...|..||.|+|||++++.||++|+|+. .+.|+.|.+|.+++++||+++|.+|++||+++|+||
T Consensus         2 ~d~Gi~~~i~~~G~g~~~P~~gd~V~v~y~~~l~dG~~~dss~~~~~p~~f~lg~~~~i~G~~~~l~~M~~Ge~~~~~ip   81 (111)
T d1kt1a2           2 KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKAWDIGVATMKKGEICHLLCK   81 (111)
T ss_dssp             CSCSCEEEC----CCSCCCCTTCEEEEECCCCSCC------------CEEEETTSSSSCHHHHHSTTTCCTTCCEEEEC-
T ss_pred             CCCCeEEEEEEcccCCcCCCCCCEEEEEEEEEECCCCEEEEEEecceeeeeecCCCcEEeeeeeeehhccCCcEEEEEEC
Confidence            4789999999999998889999999999999999999999874 579999999999999999999999999999999999


Q ss_pred             CCccCCCCCC-CCCCCcceEEEEEEEeeEE
Q 006908          230 SQYLTPSPLM-PVVEGCEEVHFEVELVHLI  258 (626)
Q Consensus       230 ~~~~~g~~~~-~~ip~~~~l~~~v~l~~~~  258 (626)
                      |++|||+.+. +.||++++|+|+|+|+++.
T Consensus        82 ~~layG~~g~~~~IPp~s~lif~ieLl~ik  111 (111)
T d1kt1a2          82 PEYAYGATGSLPKIPSNATLFFEVELLDFK  111 (111)
T ss_dssp             ---CCCTTTCTTTSCTTCCCEEEEEEEEEE
T ss_pred             HHHhCCCCCCCCcCCcCCeEEEEEEEEEEC
Confidence            9999998754 6799999999999999973

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.86  E-value=3.9e-22  Score=174.88  Aligned_cols=114  Identities=23%  Similarity=0.429  Sum_probs=102.7

Q ss_pred             eecCCceEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcC------C
Q 006908           25 KIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIP------T   98 (626)
Q Consensus        25 ~~~~~gv~~~i~~~G~G~~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~------~   98 (626)
                      .++|+||+|+++++|+|+. |..||.|.|||++++.+|++|+||+.    .+.|+.|.+|.+.++++|+.+|.      .
T Consensus         4 ~~~psGl~y~~~~~G~G~~-p~~gd~V~v~y~g~l~~G~~fdss~~----~~~p~~~~~g~~~~i~g~~~~i~g~~~l~~   78 (125)
T d1u79a_           4 SVSPSGLAFCDKVVGYGPE-AVKGQLIKAHYVGKLENGKVFDSSYN----RGKPLTFRIGVGEVIKGWDQGILGSDGIPP   78 (125)
T ss_dssp             EECTTSCEEEEEECCSSCB-CCTTCEEEEEEEEECTTSCEEEEHHH----HTSCEEEETTSSSSCHHHHHHHHCBTTBCC
T ss_pred             EECCCCCEEEEEEeccCCC-CCCCCEEEEEEEeeecCCcEEecccc----cCcceeEecCccccccchhhhccchhhccc
Confidence            5799999999999999986 99999999999999999999999987    67899999999999999988775      5


Q ss_pred             CCCCcEEEEEeeccccccCCCCCC-CCCCCCCCCceEEEEEEeeee
Q 006908           99 MLKGEVSMFKMKPQMHYGEDDCPV-AAPSTFPKDEELHFEIEMIDF  143 (626)
Q Consensus        99 m~~Ge~~~~~ip~~~~~g~~~~~~-~~~~~i~~~~~lv~~v~l~~~  143 (626)
                      |++|++++|+|||++|||+.|+.. ..+..|||+++|+|+|+|+.+
T Consensus        79 M~~G~k~~v~iP~~laYG~~G~~~~~~~~~IPp~s~LifeieLl~~  124 (125)
T d1u79a_          79 MLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  124 (125)
T ss_dssp             CBTTCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             ccCCCEEEEEECHHHCCCCCCcCCcCCCCcCCcCCeEEEEEEEEEe
Confidence            999999999999999999988641 122469999999999999986

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.84  E-value=9.1e-21  Score=163.67  Aligned_cols=109  Identities=23%  Similarity=0.472  Sum_probs=95.6

Q ss_pred             ceecCCceEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCC---CccchhHHhhcCCCC
Q 006908           24 MKIVPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGK---SKILLGLLEGIPTML  100 (626)
Q Consensus        24 ~~~~~~gv~~~i~~~G~G~~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~---~~~~~gle~~l~~m~  100 (626)
                      +++.|+||.|+|+++|+|..+|..||.|+|||++++ +|++|+++         +..|.++.   +.+++||+++|.+|+
T Consensus         3 ~~~~D~gi~k~il~~G~G~~~p~~gd~V~v~y~g~~-~g~~~~~~---------~~~~~~~~~~~~~vi~G~~~~l~~M~   72 (115)
T d1kt1a3           3 DLLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRC-GGRVFDCR---------DVAFTVGEGEDHDIPIGIDKALEKMQ   72 (115)
T ss_dssp             ETTSSSSEEEEEEECCCCSSCCCTTCEEEEEEEEEE-TTEEEEEE---------EEEEETTCGGGGTCCHHHHHHHTTCC
T ss_pred             ccccCCCEEEEEEEeecCCCCCCCCCEEEEEEEEEe-CCcccccc---------ccCceeeeccccccCchhHhhhccch
Confidence            568999999999999999767999999999999995 88888754         35566654   358999999999999


Q ss_pred             CCcEEEEEeeccccccCCCCCCCCCCCCCCCceEEEEEEeeeecc
Q 006908          101 KGEVSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAK  145 (626)
Q Consensus       101 ~Ge~~~~~ip~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~~~  145 (626)
                      +|++++|+|||++|||..+++   +..|||+++|+|+|+|+++.+
T Consensus        73 ~Ge~~~v~ip~~~ayG~~g~~---~~~Ipp~a~l~f~ieLl~~~k  114 (115)
T d1kt1a3          73 REEQCILHLGPRYGFGEAGKP---KFGIEPNAELIYEVTLKSFEK  114 (115)
T ss_dssp             TTCEEEEEECGGGSSCTTCBT---TTTBCTTCCEEEEEEEEEEEC
T ss_pred             hhceeEEEeCHHHCcCCCCCC---CCCcCcCCeEEEEEEEEEEEe
Confidence            999999999999999999875   236999999999999999964

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=1.6e-20  Score=179.15  Aligned_cols=105  Identities=23%  Similarity=0.360  Sum_probs=99.4

Q ss_pred             cccccEEEEEeecCCCcCCCCCCCeEEEEEEEEeCCCcEEEecC-CCccEEEEcCCCCccchHHHhhccCCCCcEEEEEE
Q 006908          150 ADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYV  228 (626)
Q Consensus       150 ~~D~~v~~~i~~~G~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v  228 (626)
                      ..++|+.+.++++|.| ..|..||.|+|||++++.||++|+++. ++.|+.|.+|  ++|+||++||.+|++|++++|+|
T Consensus       104 ~~~sGl~y~v~~~G~G-~~p~~gd~v~v~y~g~l~dG~~fd~s~~~~~p~~~~~~--~vi~g~~e~l~~m~~G~k~~~~i  180 (210)
T d1q6ha_         104 TSSTGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLVI  180 (210)
T ss_dssp             ECTTSCEEEEEECCSS-CCCCTTCEEEEEEEEEETTSCEEEEGGGGTSCEEEEGG--GSCHHHHHHGGGSCTTCEEEEEE
T ss_pred             EccCceEEEEeeCCCC-CCCCCCceEEEEEEEEEcCCCEEeecccCCCcceeccC--ccchhHHHHHhhccCCCEEEEEE
Confidence            3678999999999999 899999999999999999999999884 6899999995  79999999999999999999999


Q ss_pred             eCCccCCCCCCCCCCCcceEEEEEEEeeE
Q 006908          229 TSQYLTPSPLMPVVEGCEEVHFEVELVHL  257 (626)
Q Consensus       229 ~~~~~~g~~~~~~ip~~~~l~~~v~l~~~  257 (626)
                      ||++|||..+.+.||||++|+|+|+|+++
T Consensus       181 P~~laYG~~g~~~Ippns~Lvfevel~~i  209 (210)
T d1q6ha_         181 PPELAYGKAGVPGIPPNSTLVFDVELLDV  209 (210)
T ss_dssp             CGGGTTTTTCBTTBCTTCCEEEEEEEEEE
T ss_pred             CHHHCcCCCCCCCCCcCCcEEEEEEEEEE
Confidence            99999999888889999999999999987

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.82  E-value=8.7e-20  Score=168.79  Aligned_cols=149  Identities=27%  Similarity=0.473  Sum_probs=129.6

Q ss_pred             CChhhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCC-CChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHH
Q 006908          389 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNP-QDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI  467 (626)
Q Consensus       389 ~~~~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p-~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~  467 (626)
                      .+.+..+..+..++..|+.+|+.|+|.+|+..|++||.++..... ........+......+++|+|.||+++++|.+|+
T Consensus        18 ~~~~~~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai   97 (169)
T d1ihga1          18 KDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAV   97 (169)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhh
Confidence            356778889999999999999999999999999999986543211 1122233456677889999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 006908          468 EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARK  538 (626)
Q Consensus       468 ~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~  538 (626)
                      .+|++||+++|+++++|+++|.+|..+|+|++|+.+|++|++++|+| ..+...|..+...++.+.+++|+
T Consensus        98 ~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n-~~~~~~l~~~~~~l~~~~~~~k~  167 (169)
T d1ihga1          98 DSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED-KAIQAELLKVKQKIKAQKDKEKA  167 (169)
T ss_dssp             HHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999998 68999999999888888777664

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.82  E-value=7e-20  Score=158.01  Aligned_cols=107  Identities=21%  Similarity=0.442  Sum_probs=95.0

Q ss_pred             cccccccEEEEEeecCCCcCCCCCCCeEEEEEEEEeCCCcEEEecCCCccEEEEcCCC---CccchHHHhhccCCCCcEE
Q 006908          148 IIADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKS---EVPKGLEMGIGTMTREEKA  224 (626)
Q Consensus       148 ~v~~D~~v~~~i~~~G~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~g---~~~~gle~~l~~mk~Ge~~  224 (626)
                      ++..|+++.|+++++|.|++.|+.||.|+|||+++. +|++|+++    +..|.++.+   .+|+||++||.+|++||++
T Consensus         3 ~~~~D~gi~k~il~~G~G~~~p~~gd~V~v~y~g~~-~g~~~~~~----~~~~~~~~~~~~~vi~G~~~~l~~M~~Ge~~   77 (115)
T d1kt1a3           3 DLLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRC-GGRVFDCR----DVAFTVGEGEDHDIPIGIDKALEKMQREEQC   77 (115)
T ss_dssp             ETTSSSSEEEEEEECCCCSSCCCTTCEEEEEEEEEE-TTEEEEEE----EEEEETTCGGGGTCCHHHHHHHTTCCTTCEE
T ss_pred             ccccCCCEEEEEEEeecCCCCCCCCCEEEEEEEEEe-CCcccccc----ccCceeeeccccccCchhHhhhccchhhcee
Confidence            467899999999999999889999999999999975 78888764    577777753   6899999999999999999


Q ss_pred             EEEEeCCccCCCCCCC--CCCCcceEEEEEEEeeEEe
Q 006908          225 VIYVTSQYLTPSPLMP--VVEGCEEVHFEVELVHLIQ  259 (626)
Q Consensus       225 ~~~v~~~~~~g~~~~~--~ip~~~~l~~~v~l~~~~~  259 (626)
                      +|+|||++|||..+.+  .||++++|+|+|+|++|.+
T Consensus        78 ~v~ip~~~ayG~~g~~~~~Ipp~a~l~f~ieLl~~~k  114 (115)
T d1kt1a3          78 ILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEK  114 (115)
T ss_dssp             EEEECGGGSSCTTCBTTTTBCTTCCEEEEEEEEEEEC
T ss_pred             EEEeCHHHCcCCCCCCCCCcCcCCeEEEEEEEEEEEe
Confidence            9999999999987543  5899999999999999964

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

Probab=99.82  E-value=3.3e-20  Score=176.29  Aligned_cols=108  Identities=23%  Similarity=0.289  Sum_probs=99.1

Q ss_pred             ccccccEEEEEeecCCCcCCCCCCCeEEEEEEEEeCCCcEEEecC-CCccEEEEcCCCCccchHHHhhccCCCCcEEEEE
Q 006908          149 IADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIY  227 (626)
Q Consensus       149 v~~D~~v~~~i~~~G~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~  227 (626)
                      ...++|+.+.++++|.| ..|..||.|.|||++++.||++|+++. ++.|++|.+|  ++||||++||.+|++|++++|+
T Consensus        94 ~~~~sGl~y~v~~~G~G-~~p~~~d~v~v~y~g~l~dg~~f~~s~~~~~p~~~~~~--~~i~G~~e~l~~m~~G~~~~~~  170 (204)
T d1fd9a_          94 VVLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVS--QVIPGWTEALQLMPAGSTWEIY  170 (204)
T ss_dssp             EECTTSCEEEEEECCCS-CCCCTTCEEEEEEEEEETTSCEEEEHHHHCSCEEEEGG--GSCHHHHHHHTTCCTTCEEEEE
T ss_pred             EEecCccEEEEeecCCC-cccCCCCEEEEEEEEEECCCCEecccccCCCCceecCC--ccchhHHHHhcCCCCCCEEEEE
Confidence            34678999999999999 889999999999999999999999874 6789999875  7999999999999999999999


Q ss_pred             EeCCccCCCCCC-CCCCCcceEEEEEEEeeEEe
Q 006908          228 VTSQYLTPSPLM-PVVEGCEEVHFEVELVHLIQ  259 (626)
Q Consensus       228 v~~~~~~g~~~~-~~ip~~~~l~~~v~l~~~~~  259 (626)
                      |||++|||..+. +.||||++|+|+|+|+++.+
T Consensus       171 iP~~laYG~~g~~~~Ipp~s~l~feveL~~i~k  203 (204)
T d1fd9a_         171 VPSGLAYGPRSVGGPIGPNETLIFKIHLISVKK  203 (204)
T ss_dssp             ECGGGTTTTCCCSSSCCTTCCEEEEEEEEEEEC
T ss_pred             EChHHCcCCCCCCCCcCcCCcEEEEEEEEEEEc
Confidence            999999998764 66999999999999999863

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.2e-19  Score=154.25  Aligned_cols=107  Identities=21%  Similarity=0.385  Sum_probs=93.5

Q ss_pred             ccccEEEEEeecCCCcCCCCCCCeEEEEEEEEeCCCcEEEecCCCccEEEEcCCC---CccchHHHhhccCCCCcEEEEE
Q 006908          151 DDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKS---EVPKGLEMGIGTMTREEKAVIY  227 (626)
Q Consensus       151 ~D~~v~~~i~~~G~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~g---~~~~gle~~l~~mk~Ge~~~~~  227 (626)
                      .|+|+.|+|+++|.|+..|..||.|+|||++++.+|++..+     +..+..+.+   ++|+||+++|.+|++|++++|+
T Consensus         6 ~D~gi~~~il~~G~G~~~p~~gd~V~v~y~g~~~~~~~~~~-----~~~~~~~~~~~~~~i~Gl~~~l~~M~~Ge~~~i~   80 (117)
T d1q1ca2           6 EDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQR-----ELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVY   80 (117)
T ss_dssp             CSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEETTEEEEEE-----EEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEE
T ss_pred             CCCCEEEEEEeeecCCCCCCCCCEEEEEEEEEeCCCcEeec-----cccceeeecceeeeCcHHHHhhhcchhhCeEEEE
Confidence            68999999999999988999999999999999877764433     456666643   7999999999999999999999


Q ss_pred             EeCCccCCCCCC--CCCCCcceEEEEEEEeeEEeeee
Q 006908          228 VTSQYLTPSPLM--PVVEGCEEVHFEVELVHLIQVRD  262 (626)
Q Consensus       228 v~~~~~~g~~~~--~~ip~~~~l~~~v~l~~~~~~~d  262 (626)
                      |||++|||..+.  ..||++++|+|+|+|++|.+.+|
T Consensus        81 ip~~~ayG~~g~~~~~Ipp~s~l~f~veL~~~~~~kd  117 (117)
T d1q1ca2          81 LKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKE  117 (117)
T ss_dssp             ECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEEECCCC
T ss_pred             ECHHHhCcccCCCCCccCcCCeEEEEEEEEEEEeCCC
Confidence            999999998654  36999999999999999987664

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.1e-19  Score=157.24  Aligned_cols=107  Identities=25%  Similarity=0.440  Sum_probs=91.1

Q ss_pred             cCCceEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCC---CccchhHHhhcCCCCCCc
Q 006908           27 VPGSLMKAVMRPGGGDSTPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGK---SKILLGLLEGIPTMLKGE  103 (626)
Q Consensus        27 ~~~gv~~~i~~~G~G~~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~---~~~~~gle~~l~~m~~Ge  103 (626)
                      .|+||.|+|+++|.|..+|..||.|+|||++++.+|. |+++.         ..+..+.   .++++||+++|.+|++|+
T Consensus         6 ~D~gi~~~il~~G~G~~~p~~gd~V~v~y~g~~~~~~-~~~~~---------~~~~~~~~~~~~~i~Gl~~~l~~M~~Ge   75 (117)
T d1q1ca2           6 EDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKL-FDQRE---------LRFEIGEGENLDLPYGLERAIQRMEKGE   75 (117)
T ss_dssp             CSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEETTEE-EEEEE---------EEEETTCGGGGTCCHHHHHHHTTCCTTC
T ss_pred             CCCCEEEEEEeeecCCCCCCCCCEEEEEEEEEeCCCc-Eeecc---------ccceeeecceeeeCcHHHHhhhcchhhC
Confidence            5799999999999998779999999999999987765 44332         3344443   368999999999999999


Q ss_pred             EEEEEeeccccccCCCCCCCCCCCCCCCceEEEEEEeeeeccc
Q 006908          104 VSMFKMKPQMHYGEDDCPVAAPSTFPKDEELHFEIEMIDFAKA  146 (626)
Q Consensus       104 ~~~~~ip~~~~~g~~~~~~~~~~~i~~~~~lv~~v~l~~~~~~  146 (626)
                      +++|+|||++|||..+.+   +..|||+++|+|+|+|+++.+.
T Consensus        76 ~~~i~ip~~~ayG~~g~~---~~~Ipp~s~l~f~veL~~~~~~  115 (117)
T d1q1ca2          76 HSIVYLKPSYAFGSVGKE---KFQIPPNAELKYELHLKSFEKA  115 (117)
T ss_dssp             EEEEEECGGGTTTTTCBG---GGTBCTTCCEEEEEEEEEEECC
T ss_pred             eEEEEECHHHhCcccCCC---CCccCcCCeEEEEEEEEEEEeC
Confidence            999999999999998874   2379999999999999999654

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.78  E-value=1.9e-19  Score=157.43  Aligned_cols=108  Identities=21%  Similarity=0.224  Sum_probs=97.7

Q ss_pred             ccccccEEEEEeecCCCcCCCCCCCeEEEEEEEEeCCCcEEEecC-CCccEEEEcCCCCccchHHHhhc------cCCCC
Q 006908          149 IADDFGVVKKVINEGQGWETPRAPYEVKAWISAKTGDGKLILSHR-EGEPYFFTFGKSEVPKGLEMGIG------TMTRE  221 (626)
Q Consensus       149 v~~D~~v~~~i~~~G~g~~~~~~g~~V~v~y~~~~~~g~~~~s~~-~~~p~~~~~g~g~~~~gle~~l~------~mk~G  221 (626)
                      .+.++|+.+.++++|.| +.|+.||.|.|||++++.+|++|+||. .+.|+.|.+|.+.+++||+++|.      .|++|
T Consensus         4 ~~~psGl~y~~~~~G~G-~~p~~gd~V~v~y~g~l~~G~~fdss~~~~~p~~~~~g~~~~i~g~~~~i~g~~~l~~M~~G   82 (125)
T d1u79a_           4 SVSPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTG   82 (125)
T ss_dssp             EECTTSCEEEEEECCSS-CBCCTTCEEEEEEEEECTTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCBTT
T ss_pred             EECCCCCEEEEEEeccC-CCCCCCCEEEEEEEeeecCCcEEecccccCcceeEecCccccccchhhhccchhhcccccCC
Confidence            34677999999999999 889999999999999999999999884 57999999999999999998875      59999


Q ss_pred             cEEEEEEeCCccCCCCC------CCCCCCcceEEEEEEEeeE
Q 006908          222 EKAVIYVTSQYLTPSPL------MPVVEGCEEVHFEVELVHL  257 (626)
Q Consensus       222 e~~~~~v~~~~~~g~~~------~~~ip~~~~l~~~v~l~~~  257 (626)
                      ++++|+|||++|||+.+      .+.||++++|+|+|+|+.+
T Consensus        83 ~k~~v~iP~~laYG~~G~~~~~~~~~IPp~s~LifeieLl~~  124 (125)
T d1u79a_          83 GKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  124 (125)
T ss_dssp             CEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             CEEEEEECHHHCCCCCCcCCcCCCCcCCcCCeEEEEEEEEEe
Confidence            99999999999999754      3458999999999999875

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.78  E-value=6.6e-19  Score=160.12  Aligned_cols=114  Identities=25%  Similarity=0.371  Sum_probs=98.3

Q ss_pred             CCCcEEEEEeeCCCCCCCCCCCCCCCeEEEEEEEEEecCCCcEEEeeccCCCCCCEEEEcCCCcchhhHHHHhhcCCCCC
Q 006908          265 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGE  344 (626)
Q Consensus       265 ~dg~v~k~il~~G~G~~~~~~p~~~~~V~v~y~~~~~~~~g~~~~dt~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE  344 (626)
                      .+.+|.++++++|.|..   +|..|++|.|||++++.|  |++|+++. . .+.|+  .++.+.+++||+.+|..|++||
T Consensus        32 ~~sGl~y~il~~G~G~~---~P~~gd~V~v~Y~g~l~d--G~~fds~~-~-~~~p~--~~~~~~~i~G~~e~l~~M~~Ge  102 (160)
T d1jvwa_          32 LPSGLVFQRIARGSGKR---APAIDDKCEVHYTGRLRD--GTVFDSSR-E-RGKPT--TFRPNEVIKGWTEALQLMREGD  102 (160)
T ss_dssp             CTTSCEEEEEECCCCSB---CCCTTCCEEEEEEEECTT--SCEEEEHH-H-HTSCE--EECGGGSCHHHHHHHTTCCTTC
T ss_pred             CCCCCEEEEEECccccc---CCCCCcceEEEEEEEEcc--CCeeeeec-c-ccCcc--ccCccccchhHHHHhcCccccc
Confidence            46789999999999974   368899999999999876  89985544 3 35565  4567889999999999999999


Q ss_pred             EEEEEecCCCccccCCCCCCCCCCcceeeeeeecccccCCCCC
Q 006908          345 IALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWT  387 (626)
Q Consensus       345 ~~~~~i~~~~ayg~~~~~~~ip~~~~l~~~vel~~~~~~~~~~  387 (626)
                      +++|+|||++|||..|.++.|||+++|+|+|+|++|..+..+.
T Consensus       103 ~~~v~iPp~laYG~~g~~~~IPp~s~LifeIeLl~i~~~~~~~  145 (160)
T d1jvwa_         103 RWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELISIKDGGKGR  145 (160)
T ss_dssp             EEEEEECGGGTTTTTCSSSSSCTTCCEEEEEEEEEEGGGCCSC
T ss_pred             eeEEEeCHHHCcCCCCCCCCcCcCCcEEEEEEEEEEecCCCCC
Confidence            9999999999999999888899999999999999998765543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.8e-18  Score=149.67  Aligned_cols=115  Identities=26%  Similarity=0.456  Sum_probs=107.5

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~  476 (626)
                      .+..++++|+.+|+.|+|++|+..|+++|.    ..|.+           ..+|+|+|.||+++++|.+|+.+|.+++.+
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~----~~p~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~   66 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIK----LDPHN-----------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDL   66 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCcc-----------hhhhhcccccccccccccccchhhhhHHHh
Confidence            467899999999999999999999999999    67776           569999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006908          477 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (626)
Q Consensus       477 dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~  527 (626)
                      +|+++.+|+++|.++..+|++++|+.+|++|++++|++ +.+...+..++.
T Consensus        67 ~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~l~~l~~  116 (117)
T d1elwa_          67 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN-PQLKEGLQNMEA  116 (117)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-HHHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHhC
Confidence            99999999999999999999999999999999999998 678888887754

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.4e-17  Score=152.05  Aligned_cols=123  Identities=27%  Similarity=0.456  Sum_probs=112.9

Q ss_pred             hhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHH
Q 006908          392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN  471 (626)
Q Consensus       392 ~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~  471 (626)
                      ++-++.|+.++.+||.+|+.|+|++|+..|++|+.    +.|.+           ..+|+|+|.|++++|++.+|+.+|.
T Consensus         4 ~~~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~~~~~~A~~~~~   68 (159)
T d1a17a_           4 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIE----LNPSN-----------AIYYGNRSLAYLRTECYGYALGDAT   68 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccc----cchhh-----------hhhhhhhHHHHHhccccchHHHHHH
Confidence            45678999999999999999999999999999999    67766           5699999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006908          472 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (626)
Q Consensus       472 ~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~  530 (626)
                      ++|+++|+++.||+++|.++..+|+|++|+.+|++++.++|++ ..+...+..+....+
T Consensus        69 kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~-~~~~~~l~~~~~~~~  126 (159)
T d1a17a_          69 RAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD-KDAKMKYQECNKIVK  126 (159)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHH
T ss_pred             HHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998 677777777655443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=3.5e-17  Score=154.21  Aligned_cols=102  Identities=25%  Similarity=0.443  Sum_probs=97.0

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      |+.++++||.+|+.|+|++|+..|++||.    +.|.+           ..+|+|+|.||+++|+|.+|+.+|.+||.++
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~----~~p~~-----------~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~   68 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLV-----------AVYYTNRALCYLKMQQPEQALADCRRALELD   68 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC
Confidence            67899999999999999999999999999    67776           5699999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          478 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       478 p~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      |+++.+|+++|.+|..+|+|++|+.+|++|++++|++
T Consensus        69 p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~  105 (201)
T d2c2la1          69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (201)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999999999999999998754

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=5.7e-16  Score=135.87  Aligned_cols=118  Identities=22%  Similarity=0.371  Sum_probs=103.7

Q ss_pred             HHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006908          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (626)
Q Consensus       396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~  475 (626)
                      ++|.++++.|+.+|+.|+|.+|+.+|++||.    +.|.+           ..+++|+|.||+++++|.+|+.+|.++|.
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~----~~p~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~al~   66 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKE----LDPTN-----------MTYITNQAAVYFEKGDYNKCRELCEKAIE   66 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCccc-----------HHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence            4688999999999999999999999999999    57766           56999999999999999999999999999


Q ss_pred             hCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006908          476 ANPAH-------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (626)
Q Consensus       476 ~dp~~-------~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~  530 (626)
                      ++|.+       +++|+++|.++..+++|++|+.+|++++..+|.  +++...+..+.+.++
T Consensus        67 l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~--~~~~~~l~~~~k~lk  126 (128)
T d1elra_          67 VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT--PDVLKKCQQAEKILK  126 (128)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHH
T ss_pred             hCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHh
Confidence            99876       468888999999999999999999999999886  456666666655544

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4e-14  Score=122.62  Aligned_cols=113  Identities=14%  Similarity=0.184  Sum_probs=98.2

Q ss_pred             HhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCC
Q 006908          402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG---ECRKSIEACNKVLDANP  478 (626)
Q Consensus       402 k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~---~~~~A~~~~~~aL~~dp  478 (626)
                      -+.+|.++..++|++|.+.|++||.    +.|.+           ..+++|+|.|+++.+   ++.+|+..++++|..+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~----~~p~~-----------~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~   67 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKA----AGSVS-----------KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS   67 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH----HSCCC-----------HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHh----hCCCC-----------HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccC
Confidence            3567888999999999999999999    77777           459999999998754   56679999999999998


Q ss_pred             CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 006908          479 AH--VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ  530 (626)
Q Consensus       479 ~~--~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~  530 (626)
                      .+  +.+||++|.+|..+|+|++|+.+|++||+++|+| ..++..+..+.+++.
T Consensus        68 ~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~-~~A~~l~~~I~~~~~  120 (122)
T d1nzna_          68 KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN-NQAKELERLIDKAMK  120 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHHc
Confidence            66  4599999999999999999999999999999998 678877777765554

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=7.4e-13  Score=128.94  Aligned_cols=114  Identities=21%  Similarity=0.218  Sum_probs=103.4

Q ss_pred             HHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006908          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (626)
Q Consensus       396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~  475 (626)
                      ..+..+..+|..+++.|+|++|+..|++||.    +.|++           ..+|+|+|.||.++|+|.+|+.+|.+++.
T Consensus        35 ~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~----l~p~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~al~   99 (259)
T d1xnfa_          35 ERAQLLYERGVLYDSLGLRALARNDFSQALA----IRPDM-----------PEVFNYLGIYLTQAGNFDAAYEAFDSVLE   99 (259)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhc----cCCCC-----------HHHHhhhchHHHHHHHHHHhhhhhhHHHH
Confidence            4688899999999999999999999999999    67776           45899999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006908          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (626)
Q Consensus       476 ~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l  525 (626)
                      ++|+++.+++++|.++..+|++++|+..|+++++++|++ ......+...
T Consensus       100 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~  148 (259)
T d1xnfa_         100 LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND-PFRSLWLYLA  148 (259)
T ss_dssp             HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred             HHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcccc-HHHHHHHHHH
Confidence            999999999999999999999999999999999999987 4444444433

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.41  E-value=8.6e-14  Score=126.03  Aligned_cols=116  Identities=18%  Similarity=0.263  Sum_probs=94.6

Q ss_pred             HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (626)
Q Consensus       395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL  474 (626)
                      +..+..+...|+.+|..|+|++|+..|++||.+.........   .......+.+|+|+|.||.++|+|.+|+.+|.++|
T Consensus         6 ~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~---~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al   82 (156)
T d2hr2a1           6 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEA---FDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL   82 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSC---CCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhh---cccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence            456677778899999999999999999999996554321110   01123346789999999999999999999999999


Q ss_pred             HhCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 006908          475 DANPA-----------HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS  513 (626)
Q Consensus       475 ~~dp~-----------~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~  513 (626)
                      .+.|.           ..++|+++|.+|..+|++++|+.+|++|+++.|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          83 HYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             HHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            87542           3568999999999999999999999999999654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.41  E-value=4.3e-13  Score=119.84  Aligned_cols=116  Identities=19%  Similarity=0.192  Sum_probs=99.8

Q ss_pred             hhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHc----------CCHHHHHHHHHHH
Q 006908          404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL----------GECRKSIEACNKV  473 (626)
Q Consensus       404 ~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl----------~~~~~A~~~~~~a  473 (626)
                      .+..+-+.+.|++|+..|++|+.    +.|.+           +.+++|+|.|++.+          +.+++|+..|.+|
T Consensus         3 ~~~~~~r~~~fe~A~~~~e~al~----~~P~~-----------~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kA   67 (145)
T d1zu2a1           3 TETEFDRILLFEQIRQDAENTYK----SNPLD-----------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEA   67 (145)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHccHHHHHHHHHHHHh----hCCcc-----------hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            45566677889999999999999    78887           55899999999865          4458899999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006908          474 LDANPAHVKGLYRRGMAYMALGE-----------FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESK  535 (626)
Q Consensus       474 L~~dp~~~ka~~~~g~a~~~lg~-----------~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~  535 (626)
                      |+++|+++.+|+++|.+|..+|+           |++|+++|++|++++|+| ..++..|....+..+...+.
T Consensus        68 l~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~-~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1          68 LLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN-THYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHTHHHHHHHH
T ss_pred             HHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCH-HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998764           799999999999999998 67888888887766655543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=4.2e-13  Score=125.89  Aligned_cols=123  Identities=12%  Similarity=0.190  Sum_probs=100.9

Q ss_pred             HHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006908          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (626)
Q Consensus       396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~  475 (626)
                      .++..+.++|..++..|+|+.|+..|.++       .+.+           ..+++|+|.||+++|+|++|+.+|++||+
T Consensus         3 ~~~~~l~~~g~~~~~~~d~~~Al~~~~~i-------~~~~-----------~~~~~nlG~~~~~~g~~~~A~~~~~kAl~   64 (192)
T d1hh8a_           3 VEAISLWNEGVLAADKKDWKGALDAFSAV-------QDPH-----------SRICFNIGCMYTILKNMTEAEKAFTRSIN   64 (192)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTS-------SSCC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHhc-------CCCC-----------HHHHHHHHHHHHHcCCchhHHHHHHHHHH
Confidence            45667789999999999999999999753       2222           34789999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHHHHHHHHHHH
Q 006908          476 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE---------------PDATAALSKLKKQRQEVESKA  536 (626)
Q Consensus       476 ~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~---------------~~~~~~l~~l~~~~~~~~~~~  536 (626)
                      ++|+++.+|+++|.+|..+|+|++|+.+|++|+...|.|.               ..+...+..+...+.+..+..
T Consensus        65 ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~  140 (192)
T d1hh8a_          65 RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE  140 (192)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHH
Confidence            9999999999999999999999999999999999866542               234455666555555444443

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

Probab=99.39  E-value=1.4e-13  Score=110.60  Aligned_cols=85  Identities=14%  Similarity=0.218  Sum_probs=76.0

Q ss_pred             CCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCCCcEEEEEeeccccccCCCCCCC
Q 006908           44 TPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVA  123 (626)
Q Consensus        44 ~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge~~~~~ip~~~~~g~~~~~~~  123 (626)
                      +++.||.|+|+|+++. ||+.|+++.      ...+.|.+|.+.++|||+++|.+|++|+++.|.|++..+|+..++   
T Consensus         1 k~a~GD~V~idy~g~~-dG~~~~~~~------~~~~~~~lg~~~~ipgf~~~l~g~~~Ge~~~~~i~~p~~y~~~~l---   70 (85)
T d1hxva_           1 KLANGDIAIIDFTGIV-DNKKLASAS------AQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSDYHVKEL---   70 (85)
T ss_dssp             CCCSSEEEEEEEEEEE-TTEECSTTC------CSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTTSSSSGG---
T ss_pred             CCCCCCEEEEEEEEEE-CCEEccccc------ccCCCEEECCcccCchHHHHhccCcCCCeEEEEEEChhhcCcccC---
Confidence            3789999999999995 999998764      357899999999999999999999999999999999999998765   


Q ss_pred             CCCCCCCCceEEEEEEeeeec
Q 006908          124 APSTFPKDEELHFEIEMIDFA  144 (626)
Q Consensus       124 ~~~~i~~~~~lv~~v~l~~~~  144 (626)
                            +|+++.|+|+|.+++
T Consensus        71 ------aGk~~~f~V~v~~Vk   85 (85)
T d1hxva_          71 ------QSKPVTFEVVLKAIK   85 (85)
T ss_dssp             ------GSCCCEEEEEECCBC
T ss_pred             ------CCCcEEEEEEEEEeC
Confidence                  489999999998873

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

Probab=99.38  E-value=1.8e-13  Score=122.48  Aligned_cols=75  Identities=17%  Similarity=0.334  Sum_probs=67.0

Q ss_pred             CCCCCEEEEEEEEEEcCCcEEEeeccC---------CCCCCcceEEEeCCCccchhHHhhcCCCCCCcEEEEEeeccccc
Q 006908           45 PSDGDQVAYHCTVRTLDGVIVESTRSE---------YGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHY  115 (626)
Q Consensus        45 p~~gd~V~v~y~~~~~dG~~~~st~~~---------~~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge~~~~~ip~~~~~  115 (626)
                      ++.||.|.+||++++.||++|+||++.         .+..+.|+.|.+|.++++|||+++|.+|++|+++.|.|||+.||
T Consensus         2 v~~G~~V~v~Y~~~~~~G~~fdsT~e~~~~~~~~~~~~~~~~P~~f~~G~g~~ipglE~al~gm~~Ge~~~v~i~p~~ay   81 (151)
T d1ix5a_           2 VDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAY   81 (151)
T ss_dssp             CCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSS
T ss_pred             ccCCCEEEEEEEEEECCCCEEEeCchHhcccccccccccCCCCEEEEecCCCccHHHHHHHHhhcCCceeEEEeCHHHhc
Confidence            678999999999999999999999642         02245799999999999999999999999999999999999999


Q ss_pred             cCCC
Q 006908          116 GEDD  119 (626)
Q Consensus       116 g~~~  119 (626)
                      |...
T Consensus        82 G~~d   85 (151)
T d1ix5a_          82 GNRN   85 (151)
T ss_dssp             CSCC
T ss_pred             cccc
Confidence            9864

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.36  E-value=1.4e-12  Score=110.93  Aligned_cols=92  Identities=12%  Similarity=0.053  Sum_probs=86.3

Q ss_pred             HhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 006908          402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV  481 (626)
Q Consensus       402 k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~  481 (626)
                      .+.|..++++|+|.+|+..|++++.    ..|.+           ..+|+++|.|+.+++++.+|+.++.++++++|+++
T Consensus        20 ~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~-----------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~   84 (112)
T d1hxia_          20 MEEGLSMLKLANLAEAALAFEAVCQ----KEPER-----------EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI   84 (112)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhcc----ccccc-----------chhhhhhhhhhhhhhhHHHhhcccccccccccccc
Confidence            4678899999999999999999999    66766           56899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908          482 KGLYRRGMAYMALGEFEEAQRDFEMMM  508 (626)
Q Consensus       482 ka~~~~g~a~~~lg~~~eA~~~~~kAl  508 (626)
                      .+|+.+|.+|..+|++++|++.|+++|
T Consensus        85 ~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          85 AVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            999999999999999999999999986

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

Probab=99.33  E-value=4.9e-13  Score=119.50  Aligned_cols=73  Identities=15%  Similarity=0.162  Sum_probs=66.3

Q ss_pred             CCCCCeEEEEEEEEeCCCcEEEecC--------------CCccEEEEcCCCCccchHHHhhccCCCCcEEEEEEeCCccC
Q 006908          169 PRAPYEVKAWISAKTGDGKLILSHR--------------EGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLT  234 (626)
Q Consensus       169 ~~~g~~V~v~y~~~~~~g~~~~s~~--------------~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~~~~~~  234 (626)
                      ++.|+.|++||++++.||++|+||.              ...|+.|.+|.|+++|||+++|.+|++|+++.|.|||+.||
T Consensus         2 v~~G~~V~v~Y~~~~~~G~~fdsT~e~~~~~~~~~~~~~~~~P~~f~~G~g~~ipglE~al~gm~~Ge~~~v~i~p~~ay   81 (151)
T d1ix5a_           2 VDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAY   81 (151)
T ss_dssp             CCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSS
T ss_pred             ccCCCEEEEEEEEEECCCCEEEeCchHhcccccccccccCCCCEEEEecCCCccHHHHHHHHhhcCCceeEEEeCHHHhc
Confidence            5789999999999999999999873              45799999999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q 006908          235 PSPLMPV  241 (626)
Q Consensus       235 g~~~~~~  241 (626)
                      |......
T Consensus        82 G~~d~~~   88 (151)
T d1ix5a_          82 GNRNEML   88 (151)
T ss_dssp             CSCCSTT
T ss_pred             cccccCc
Confidence            9665443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=4.3e-11  Score=111.81  Aligned_cols=101  Identities=9%  Similarity=0.096  Sum_probs=91.9

Q ss_pred             HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006908          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (626)
Q Consensus       399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp  478 (626)
                      ..+.+.|+.++..|+|++|+..|++||+    ++|..           ..+|+|+|.||.++|+|.+|+.+|.+||...+
T Consensus        37 ~~~~nlG~~~~~~g~~~~A~~~~~kAl~----ldp~~-----------~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~  101 (192)
T d1hh8a_          37 RICFNIGCMYTILKNMTEAEKAFTRSIN----RDKHL-----------AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR  101 (192)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHcCCchhHHHHHHHHHH----Hhhhh-----------hhhHHHHHHHHHhhccHHHHHHHHHHHHHhCc
Confidence            3577999999999999999999999999    67766           56999999999999999999999999998765


Q ss_pred             CC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          479 AH----------------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       479 ~~----------------~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      .+                ..++|++|.++..+|++++|++.|.+|+.+.|..
T Consensus       102 ~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_         102 GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             TCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             cCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            43                4789999999999999999999999999998874

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

Probab=99.20  E-value=1.1e-11  Score=99.37  Aligned_cols=83  Identities=22%  Similarity=0.153  Sum_probs=72.9

Q ss_pred             CCCCCeEEEEEEEEeCCCcEEEecCCCccEEEEcCCCCccchHHHhhccCCCCcEEEEEEeCCccCCCCCCCCCCCcceE
Q 006908          169 PRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEV  248 (626)
Q Consensus       169 ~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~ip~~~~l  248 (626)
                      +..||.|+|+|+++ .||+.|+++. ...+.|.+|.+.++|||+++|.+|++|+++.|.|++...|+...    .++.++
T Consensus         2 ~a~GD~V~idy~g~-~dG~~~~~~~-~~~~~~~lg~~~~ipgf~~~l~g~~~Ge~~~~~i~~p~~y~~~~----laGk~~   75 (85)
T d1hxva_           2 LANGDIAIIDFTGI-VDNKKLASAS-AQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSDYHVKE----LQSKPV   75 (85)
T ss_dssp             CCSSEEEEEEEEEE-ETTEECSTTC-CSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTTSSSSG----GGSCCC
T ss_pred             CCCCCEEEEEEEEE-ECCEEccccc-ccCCCEEECCcccCchHHHHhccCcCCCeEEEEEEChhhcCccc----CCCCcE
Confidence            56899999999997 4999988653 46789999999999999999999999999999999999998543    367899


Q ss_pred             EEEEEEeeE
Q 006908          249 HFEVELVHL  257 (626)
Q Consensus       249 ~~~v~l~~~  257 (626)
                      .|+|+|+++
T Consensus        76 ~f~V~v~~V   84 (85)
T d1hxva_          76 TFEVVLKAI   84 (85)
T ss_dssp             EEEEEECCB
T ss_pred             EEEEEEEEe
Confidence            999999876

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=3.1e-11  Score=121.26  Aligned_cols=101  Identities=22%  Similarity=0.366  Sum_probs=93.1

Q ss_pred             HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006908          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (626)
Q Consensus       399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp  478 (626)
                      ..+...|..++..|++++|+..|++++.    ..|.+           ..+|.++|.|+.++|++.+|+.+|.++++++|
T Consensus       173 ~~~~~l~~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  237 (323)
T d1fcha_         173 DVQCGLGVLFNLSGEYDKAVDCFTAALS----VRPND-----------YLLWNKLGATLANGNQSEEAVAAYRRALELQP  237 (323)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             ccchhhHHHHHHHHHHhhhhcccccccc----ccccc-----------ccchhhhhhcccccccchhHHHHHHHHHHHhh
Confidence            3456788899999999999999999998    55655           45899999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       479 ~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      +++.+|+++|.+|..+|++++|+..|++|++++|++
T Consensus       238 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  273 (323)
T d1fcha_         238 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS  273 (323)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred             ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcC
Confidence            999999999999999999999999999999999987

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=7.8e-11  Score=118.94  Aligned_cols=126  Identities=9%  Similarity=0.003  Sum_probs=76.6

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHH------------------H------HHhhhhhHHHHH
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG------------------K------VFVGKRNLLHLN  452 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~------------------~------~~~~~~~~~~~N  452 (626)
                      .++.+...|..+.+.+.+++|+..|++||.    ++|.+..-+                  .      ...+-...+|.+
T Consensus        42 ~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~----lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~  117 (315)
T d2h6fa1          42 FRDVYDYFRAVLQRDERSERAFKLTRDAIE----LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH  117 (315)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHHHHHH----HCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            344444455556666666666666666666    444431100                  0      011112456777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006908          453 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (626)
Q Consensus       453 la~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~  527 (626)
                      +|.++.++|++.+|+..+.++++++|.+..+|+++|.++..++++++|+.+|++|++++|.| ..+...+..+..
T Consensus       118 ~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n-~~a~~~r~~~l~  191 (315)
T d2h6fa1         118 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN-NSVWNQRYFVIS  191 (315)
T ss_dssp             HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-HHHHHHHHHHHH
T ss_pred             HhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCcc-HHHHHHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777776 445555555433

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=1.5e-10  Score=112.12  Aligned_cols=116  Identities=16%  Similarity=0.131  Sum_probs=96.2

Q ss_pred             chhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 006908          406 NRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLY  485 (626)
Q Consensus       406 n~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~  485 (626)
                      ..+....+++.|+..+.+++.    ..+..+       ...+.+|+++|.||.++|+|++|+.+|.++|.++|+++.+|+
T Consensus         7 ~~~~~~~~~e~al~~~~e~l~----~~~~~~-------~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~   75 (259)
T d1xnfa_           7 VPLQPTLQQEVILARMEQILA----SRALTD-------DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFN   75 (259)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHT----SSCCCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred             hcccccHHHHHHHHHHHHHHH----hhhcCC-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHh
Confidence            344556678899999999887    222221       224678999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 006908          486 RRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVE  533 (626)
Q Consensus       486 ~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~  533 (626)
                      ++|.+|..+|++++|+..|++|++++|++ ..+...+..+.....+..
T Consensus        76 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~  122 (259)
T d1xnfa_          76 YLGIYLTQAGNFDAAYEAFDSVLELDPTY-NYAHLNRGIALYYGGRDK  122 (259)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTC-THHHHHHHHHHHHTTCHH
T ss_pred             hhchHHHHHHHHHHhhhhhhHHHHHHhhh-hhhHHHHHHHHHHHhhHH
Confidence            99999999999999999999999999998 567777777665544433

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=8.9e-11  Score=118.52  Aligned_cols=112  Identities=7%  Similarity=-0.052  Sum_probs=89.0

Q ss_pred             HHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006908          400 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA  479 (626)
Q Consensus       400 ~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~  479 (626)
                      .+..+|..+.+.|++++|+..|.+|+.    +.|.+           ..+|+|+|.|+.++++|.+|+.+|.++|+++|.
T Consensus       114 a~~~~~~~~~~l~~~~eAl~~~~kal~----~dp~n-----------~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~  178 (315)
T d2h6fa1         114 VWHHRRVLVEWLRDPSQELEFIADILN----QDAKN-----------YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR  178 (315)
T ss_dssp             HHHHHHHHHHHHTCCTTHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT
T ss_pred             HHHHHhHHHHhhccHHHHHHHHhhhhh----hhhcc-----------hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc
Confidence            333444555555555555555555554    34433           569999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006908          480 HVKGLYRRGMAYMALGE------FEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (626)
Q Consensus       480 ~~ka~~~~g~a~~~lg~------~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~  527 (626)
                      +..||++||.++..++.      +++|+..+.+|++++|+| ..+...+..+..
T Consensus       179 n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~-~~~~~~l~~ll~  231 (315)
T d2h6fa1         179 NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN-ESAWNYLKGILQ  231 (315)
T ss_dssp             CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCc-hHHHHHHHHHHH
Confidence            99999999999998887      689999999999999998 888877776643

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.1e-10  Score=118.60  Aligned_cols=125  Identities=14%  Similarity=0.180  Sum_probs=95.3

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHH-----------------------HHhhhhhHHHHHHH
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGK-----------------------VFVGKRNLLHLNVA  454 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~-----------------------~~~~~~~~~~~Nla  454 (626)
                      +..+...|..+++.|++++|+..|++++.    +.|.+.+-..                       ...+....++.+++
T Consensus       237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  312 (388)
T d1w3ba_         237 AVVHGNLACVYYEQGLIDLAIDTYRRAIE----LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA  312 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHH
Confidence            45566778888888888888888888888    5665532110                       01112345778888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006908          455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (626)
Q Consensus       455 ~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~  527 (626)
                      .++.++|+|++|+..+.++++++|+++.+++++|.++..+|++++|+..|++|++++|++ ..+...|..+..
T Consensus       313 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~-~~a~~~lg~~~~  384 (388)
T d1w3ba_         313 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF-ADAYSNMGNTLK  384 (388)
T ss_dssp             HHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC-HHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHH
Confidence            888888888888888888888888888888888888888888888888888888888887 567777666543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.13  E-value=6e-10  Score=102.54  Aligned_cols=119  Identities=15%  Similarity=0.150  Sum_probs=101.5

Q ss_pred             HHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCC-----C--ChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHH
Q 006908          395 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNP-----Q--DDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI  467 (626)
Q Consensus       395 ~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p-----~--~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~  467 (626)
                      +...+.+...|+.++..|++++|+..|.+||.+...-..     .  -..+...+......++.+++.+++++|+|.+|+
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            456788899999999999999999999999996432110     0  112334456677789999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HhcCCC
Q 006908          468 EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMM-------MKVDKS  513 (626)
Q Consensus       468 ~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kA-------l~l~P~  513 (626)
                      .+|.++|.++|.+..+|++++.+|..+|++.+|+..|+++       |-++|+
T Consensus        88 ~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          88 AELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            9999999999999999999999999999999999999998       556887

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.4e-10  Score=95.09  Aligned_cols=89  Identities=15%  Similarity=0.158  Sum_probs=73.6

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +....+.|+.+|+.|+|.+|+..|++|++..+.....        ....+.++.|+|.|+.++|+|.+|+.+++++|+++
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~--------~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~   76 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEIS--------TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC--------SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhcc--------CccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence            4456789999999999999999999999865432111        12245789999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHc
Q 006908          478 PAHVKGLYRRGMAYMAL  494 (626)
Q Consensus       478 p~~~ka~~~~g~a~~~l  494 (626)
                      |++..|+++++.....+
T Consensus        77 P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          77 PEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHh
Confidence            99999999998766544

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=3.2e-10  Score=114.94  Aligned_cols=99  Identities=16%  Similarity=0.269  Sum_probs=92.6

Q ss_pred             HhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 006908          402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV  481 (626)
Q Consensus       402 k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~  481 (626)
                      .+.|+.+|+.|+|++|+..|++++.    ..|.+           ..+++++|.||+++|+|++|+..+.++++++|+++
T Consensus         3 l~la~~~~~~G~~~~A~~~~~~~l~----~~p~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~   67 (388)
T d1w3ba_           3 MELAHREYQAGDFEAAERHCMQLWR----QEPDN-----------TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLA   67 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            4689999999999999999999998    56766           35889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH
Q 006908          482 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE  515 (626)
Q Consensus       482 ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~  515 (626)
                      .+|+++|.+|..+|++++|+..+.++++.+|.+.
T Consensus        68 ~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  101 (388)
T d1w3ba_          68 EAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFI  101 (388)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHhhhhccccccccccccccccccccc
Confidence            9999999999999999999999999999999873

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=2.4e-10  Score=93.59  Aligned_cols=80  Identities=11%  Similarity=0.043  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 006908          449 LHLNVAACLLKLGECRKSIEACNKVLDANPAH-------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAA  521 (626)
Q Consensus       449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~-------~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~  521 (626)
                      -++++|.+++++|+|..|+..+.+||++.|.+       +.+|+++|.++..+|++++|+..|++||+++|++ +.+..+
T Consensus         7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~-~~a~~N   85 (95)
T d1tjca_           7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH-QRANGN   85 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCC-HHHHHH
Confidence            46789999999999999999999999986543       6899999999999999999999999999999998 678888


Q ss_pred             HHHHHHHH
Q 006908          522 LSKLKKQR  529 (626)
Q Consensus       522 l~~l~~~~  529 (626)
                      +..+++.+
T Consensus        86 l~~~~~~l   93 (95)
T d1tjca_          86 LKYFEYIM   93 (95)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            88776654

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.08  E-value=8.9e-10  Score=93.05  Aligned_cols=88  Identities=14%  Similarity=0.083  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006908          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (626)
Q Consensus       448 ~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~  527 (626)
                      ..++++|.++++.|++.+|+..+++++.++|+++.+|+.+|.++..++++++|+.+|++|++++|++ ..+...|..+..
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~la~~y~   95 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD-IAVHAALAVSHT   95 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccccccc-ccchHHHHHHHH
Confidence            3467899999999999999999999999999999999999999999999999999999999999998 678888888887


Q ss_pred             HHHHHHHHH
Q 006908          528 QRQEVESKA  536 (626)
Q Consensus       528 ~~~~~~~~~  536 (626)
                      ......++.
T Consensus        96 ~~g~~~~A~  104 (112)
T d1hxia_          96 NEHNANAAL  104 (112)
T ss_dssp             HHHHHHHHH
T ss_pred             HCCCHHHHH
Confidence            777666554

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=4.8e-10  Score=112.23  Aligned_cols=98  Identities=13%  Similarity=0.132  Sum_probs=92.6

Q ss_pred             HhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 006908          402 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV  481 (626)
Q Consensus       402 k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~  481 (626)
                      .++|..+++.|+|++|+..|+++++    .+|.+           ..+|.++|.|+..+|+|.+|+.++.++++++|++.
T Consensus        23 ~~~g~~~~~~g~~~~A~~~~~~al~----~~P~~-----------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~   87 (323)
T d1fcha_          23 FEEGLRRLQEGDLPNAVLLFEAAVQ----QDPKH-----------MEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ   87 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH----SCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCChHHHHHHHHhhhccccccc
Confidence            4689999999999999999999999    77876           45899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          482 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       482 ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      .+|+++|.++..+|++++|+..|++++.++|.+
T Consensus        88 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  120 (323)
T d1fcha_          88 TALMALAVSFTNESLQRQACEILRDWLRYTPAY  120 (323)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT
T ss_pred             cccccccccccccccccccccchhhHHHhccch
Confidence            999999999999999999999999999999874

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.00  E-value=1.1e-09  Score=101.68  Aligned_cols=87  Identities=14%  Similarity=0.145  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 006908          449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ  528 (626)
Q Consensus       449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~  528 (626)
                      -+.+.|.++++.|+|.+|+..|.+||.++|.++.+|+++|.||..+|+|++|+.+|++|++++|++ ..+...+..+...
T Consensus         6 ~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~-~~a~~~lg~~~~~   84 (201)
T d2c2la1           6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS-VKAHFFLGQCQLE   84 (201)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCc-HHHHHHHHHHHHH
Confidence            466899999999999999999999999999999999999999999999999999999999999998 6778888887766


Q ss_pred             HHHHHHHH
Q 006908          529 RQEVESKA  536 (626)
Q Consensus       529 ~~~~~~~~  536 (626)
                      +....+..
T Consensus        85 l~~~~~A~   92 (201)
T d2c2la1          85 MESYDEAI   92 (201)
T ss_dssp             TTCHHHHH
T ss_pred             CCCHHHHH
Confidence            66555443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=3.6e-09  Score=89.96  Aligned_cols=95  Identities=12%  Similarity=0.151  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 006908          450 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (626)
Q Consensus       450 ~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~  529 (626)
                      +.+.|..++++|+|++|+..|.++|.++|.++.+|+.+|.+|..+|++++|+.+|.+|++++|++ ..+...+..+...+
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~g~~~~~~   84 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW-GKGYSRKAAALEFL   84 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccch-hhHHHHHHHHHHHc
Confidence            45689999999999999999999999999999999999999999999999999999999999998 67888888887777


Q ss_pred             HHHHHHHHHHHHccccC
Q 006908          530 QEVESKARKQFKGLFDK  546 (626)
Q Consensus       530 ~~~~~~~~~~~~~~~~~  546 (626)
                      ....+... .|.+....
T Consensus        85 ~~~~~A~~-~~~~a~~~  100 (117)
T d1elwa_          85 NRFEEAKR-TYEEGLKH  100 (117)
T ss_dssp             TCHHHHHH-HHHHHHTT
T ss_pred             cCHHHHHH-HHHHHHHh
Confidence            76665543 34444433

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=3.1e-09  Score=95.47  Aligned_cols=88  Identities=14%  Similarity=0.094  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006908          448 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (626)
Q Consensus       448 ~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~  527 (626)
                      .-+...|.++++.|+|.+|+..|.++|+++|+++.+|+++|.+++.+|++++|+.+|++|++++|++ ..+...+..+..
T Consensus        11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~-~~a~~~~g~~~~   89 (159)
T d1a17a_          11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY-IKGYYRRAASNM   89 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccc-hHHHHHHHHHHH
Confidence            3456789999999999999999999999999999999999999999999999999999999999998 567777777766


Q ss_pred             HHHHHHHHH
Q 006908          528 QRQEVESKA  536 (626)
Q Consensus       528 ~~~~~~~~~  536 (626)
                      .+.+..+..
T Consensus        90 ~~g~~~eA~   98 (159)
T d1a17a_          90 ALGKFRAAL   98 (159)
T ss_dssp             HTTCHHHHH
T ss_pred             HcCCHHHHH
Confidence            555554443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=1.5e-09  Score=93.88  Aligned_cols=76  Identities=11%  Similarity=0.253  Sum_probs=67.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 006908          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS  523 (626)
Q Consensus       447 ~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~  523 (626)
                      +..+-|+|.++++.++|.+|+.+|+++|+++|+++.+++++|.+|..+|+|++|+.+|++|++++|++ ..+...+.
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~-~~~~~~~a   79 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-REDYRQIA   79 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCccc-HHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999876 33333333

>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Escherichia coli [TaxId: 562]

Probab=98.90  E-value=1.3e-09  Score=90.73  Aligned_cols=89  Identities=18%  Similarity=0.292  Sum_probs=74.6

Q ss_pred             CCCCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCCCcEEEEEeeccccccCCCCCC
Q 006908           43 STPSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPV  122 (626)
Q Consensus        43 ~~p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge~~~~~ip~~~~~g~~~~~~  122 (626)
                      +.++.||.|+|+|+++ .||+.+.+..      ...+.|.+|.+.+++||+++|.||++|+.+.|.+.....|....+  
T Consensus        13 r~a~~GD~v~id~~~~-~dG~~~~~~~------~~~~~~~lg~~~~~~gf~~~L~G~k~Ge~~~~~~~~P~d~~~~~l--   83 (106)
T d1l1pa_          13 GAVEAEDRVTIDFTGS-VDGEEFEGGK------ASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENL--   83 (106)
T ss_dssp             SSCCTTEEEEEEEECC-SSSSCCSTTE------EEEEEEEETTSCCCTTHHHHTTSCCTTCCEEEEECCCSSCCCTTT--
T ss_pred             ccccCCCEEEEEEEEE-ECCEECCCCc------ccceEEEecCCCccchHHHHhcCCCCCceEEEEEEeCCCCCchhh--
Confidence            4367899999999997 5998876432      346899999999999999999999999999999987778865554  


Q ss_pred             CCCCCCCCCceEEEEEEeeeecccc
Q 006908          123 AAPSTFPKDEELHFEIEMIDFAKAK  147 (626)
Q Consensus       123 ~~~~~i~~~~~lv~~v~l~~~~~~~  147 (626)
                             +|.++.|.|+|.++....
T Consensus        84 -------aGK~v~f~V~v~~i~~~~  101 (106)
T d1l1pa_          84 -------KGKAAKFAINLKKVEERE  101 (106)
T ss_dssp             -------TTCCEEEEEEEEEEECCC
T ss_pred             -------CCCEEEEEEEEEEecccc
Confidence                   489999999999997543

>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Vibrio cholerae [TaxId: 666]

Probab=98.82  E-value=2e-09  Score=90.70  Aligned_cols=86  Identities=20%  Similarity=0.314  Sum_probs=73.8

Q ss_pred             CCCCCEEEEEEEEEEcCCcEEEeeccCCCCCCcceEEEeCCCccchhHHhhcCCCCCCcEEEEEeeccccccCCCCCCCC
Q 006908           45 PSDGDQVAYHCTVRTLDGVIVESTRSEYGGKGIPIRHVLGKSKILLGLLEGIPTMLKGEVSMFKMKPQMHYGEDDCPVAA  124 (626)
Q Consensus        45 p~~gd~V~v~y~~~~~dG~~~~st~~~~~~~~~p~~~~lg~~~~~~gle~~l~~m~~Ge~~~~~ip~~~~~g~~~~~~~~  124 (626)
                      ++.||.|+|+|+++ .||+.+...      ....+.|.+|.+.++++|+++|.||++|+++.|.+.....|....+    
T Consensus        24 a~~gD~v~id~~~~-~dG~~~~~~------~~~~~~~~lg~~~~~~~f~~~L~G~k~Ge~~~~~~~~Ped~~~~~l----   92 (113)
T d1t11a3          24 AENGKRVSIDFVGS-IDGVEFEGG------KAENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAENL----   92 (113)
T ss_dssp             CCTTCEEEEEEEEE-SSSSCCTTC------EEEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTTT----
T ss_pred             ccCCCEEEEEEEEE-ECCEEccCC------ccceEEEEeccccccccHHHhhcCCcCCCEEEEEEeCCCcCCcccc----
Confidence            68999999999998 589877643      3457999999999999999999999999999999887778876554    


Q ss_pred             CCCCCCCceEEEEEEeeeeccc
Q 006908          125 PSTFPKDEELHFEIEMIDFAKA  146 (626)
Q Consensus       125 ~~~i~~~~~lv~~v~l~~~~~~  146 (626)
                           +|.++.|.|+|.+++..
T Consensus        93 -----aGk~~~f~v~v~~Ik~~  109 (113)
T d1t11a3          93 -----KGKAAKFAIKVNKVEAR  109 (113)
T ss_dssp             -----SSCEEEECCCEEEEEEE
T ss_pred             -----CCCeEEEEEEEEEEEec
Confidence                 48999999999999643

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.75  E-value=2.2e-08  Score=90.70  Aligned_cols=91  Identities=11%  Similarity=0.044  Sum_probs=81.6

Q ss_pred             HHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006908          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (626)
Q Consensus       396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~  475 (626)
                      ..+..+.++|..+++.|+|.+|+..|++||.    +.|.+           ..+|+++|.||.++++|.+|+.++.++|+
T Consensus        75 ~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~----~~p~~-----------~~a~~~~g~~~~~l~~~~~A~~~~~~al~  139 (169)
T d1ihga1          75 VALSCVLNIGACKLKMSDWQGAVDSCLEALE----IDPSN-----------TKALYRRAQGWQGLKEYDQALADLKKAQE  139 (169)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----TCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhhcccchhhhhhhhhhh----hhhhh-----------hhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence            3566777899999999999999999999999    77776           56899999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006908          476 ANPAHVKGLYRRGMAYMALGEFEEAQ  501 (626)
Q Consensus       476 ~dp~~~ka~~~~g~a~~~lg~~~eA~  501 (626)
                      ++|++..++..++.+...+..+.++.
T Consensus       140 l~p~n~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         140 IAPEDKAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988877766654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.71  E-value=3.8e-08  Score=89.07  Aligned_cols=88  Identities=16%  Similarity=0.096  Sum_probs=78.4

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~  476 (626)
                      .+..+.+.|..+++.++|.+|+..|++++.    +.|.+           ..+|+++|.||..+|+|.+|+.+|.+++.+
T Consensus        63 ~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~----l~p~~-----------~~a~~~~~~~~~~l~~~~~A~~~~~~al~l  127 (168)
T d1kt1a1          63 LLAAFLNLAMCYLKLREYTKAVECCDKALG----LDSAN-----------EKGLYRRGEAQLLMNEFESAKGDFEKVLEV  127 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHHHHHhHHHHHHHhhhcccchhhhhhhhh----cccch-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            345667899999999999999999999999    67766           568999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHH
Q 006908          477 NPAHVKGLYRRGMAYMALGEFEE  499 (626)
Q Consensus       477 dp~~~ka~~~~g~a~~~lg~~~e  499 (626)
                      +|+|..++..++.+...++++.+
T Consensus       128 ~P~n~~~~~~l~~~~~~~~~~~e  150 (168)
T d1kt1a1         128 NPQNKAARLQIFMCQKKAKEHNE  150 (168)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhHHH
Confidence            99999999999988877766644

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=1.2e-08  Score=109.24  Aligned_cols=111  Identities=9%  Similarity=-0.050  Sum_probs=78.6

Q ss_pred             HHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006908          399 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP  478 (626)
Q Consensus       399 ~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp  478 (626)
                      ..+...|..+.+.+++..|+..|.+++..                 ....++.|+|.++..+++|.+|+.+|.+|+.++|
T Consensus       121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----------------~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P  183 (497)
T d1ya0a1         121 VKSSQLGIISNKQTHTSAIVKPQSSSCSY-----------------ICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVP  183 (497)
T ss_dssp             ----------------------CCHHHHH-----------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHhHHHHHhCCCHHHHHHHHHHHhCC-----------------CHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence            33445566666666666666666666651                 1135789999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 006908          479 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK  527 (626)
Q Consensus       479 ~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~  527 (626)
                      ++..+|+++|.++...|++.+|+.+|.+|+.++|.+ +.++.+|..+-.
T Consensus       184 ~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~-~~a~~nL~~~~~  231 (497)
T d1ya0a1         184 SNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPF-PAASTNLQKALS  231 (497)
T ss_dssp             TBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCC-HHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHH
Confidence            999999999999999999999999999999999998 678888876644

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=5.1e-08  Score=88.42  Aligned_cols=89  Identities=11%  Similarity=0.034  Sum_probs=79.3

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +..+.+.|..+++.|+|.+|+..|++||.    +.|.+           ..+++++|.||+.+|+|.+|+.+|.+++.++
T Consensus        62 ~~~~~nla~~y~k~~~~~~A~~~~~~al~----~~p~~-----------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  126 (170)
T d1p5qa1          62 LASHLNLAMCHLKLQAFSAAIESCNKALE----LDSNN-----------EKGLSRRGEAHLAVNDFELARADFQKVLQLY  126 (170)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhhhcccccchhhhhhh----ccccc-----------hhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence            44566789999999999999999999999    67766           5689999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHH
Q 006908          478 PAHVKGLYRRGMAYMALGEFEEAQ  501 (626)
Q Consensus       478 p~~~ka~~~~g~a~~~lg~~~eA~  501 (626)
                      |+|..+...++.++..+.++.+..
T Consensus       127 P~n~~~~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1         127 PNNKAAKTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988777765543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.60  E-value=6e-08  Score=86.33  Aligned_cols=83  Identities=13%  Similarity=0.063  Sum_probs=74.8

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      +..+.+.|..+++.|+|.+|+..|++||.    +.|.+           ..+|+++|.||..+|+|.+|+.+|.++++++
T Consensus        67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~----~~p~~-----------~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~  131 (153)
T d2fbna1          67 ISCNLNLATCYNKNKDYPKAIDHASKVLK----IDKNN-----------VKALYKLGVANMYFGFLEEAKENLYKAASLN  131 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HSTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHhhHHHHHHHhcccchhhhhhhcccc----ccchh-----------hhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            45667899999999999999999999999    67766           5699999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcC
Q 006908          478 PAHVKGLYRRGMAYMALG  495 (626)
Q Consensus       478 p~~~ka~~~~g~a~~~lg  495 (626)
                      |+|..+...++.+...+.
T Consensus       132 P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1         132 PNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             TTCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            999999988888876553

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.59  E-value=8e-08  Score=94.87  Aligned_cols=108  Identities=9%  Similarity=0.096  Sum_probs=88.5

Q ss_pred             HHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006908          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD  475 (626)
Q Consensus       396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~  475 (626)
                      +.+..+.+.|+.+...++|++|+..|.+|+.+.....  +       ....+.+|.|+|.||.++++|.+|+.++.++++
T Consensus        35 ~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~--~-------~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~  105 (290)
T d1qqea_          35 EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAG--N-------EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ  105 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTT--C-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC--C-------CHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhH
Confidence            3466788889999999999999999999998644321  1       112367899999999999999999999999998


Q ss_pred             hCCCC------HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCC
Q 006908          476 ANPAH------VKGLYRRGMAYMA-LGEFEEAQRDFEMMMKVDK  512 (626)
Q Consensus       476 ~dp~~------~ka~~~~g~a~~~-lg~~~eA~~~~~kAl~l~P  512 (626)
                      +.+.+      ..++.++|.++.. ++++++|+..|++|+++.+
T Consensus       106 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~  149 (290)
T d1qqea_         106 IFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYA  149 (290)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH
Confidence            86544      6788999988865 7999999999999998843

>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=7e-08  Score=79.89  Aligned_cols=87  Identities=17%  Similarity=0.164  Sum_probs=70.2

Q ss_pred             CCCCCCCeEEEEEEEEeCCCcEEEecCCCccEEEEcCCCCccchHHHhhccCCCCcEEEEEEeCCccCCCCCCCCCCCcc
Q 006908          167 ETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCE  246 (626)
Q Consensus       167 ~~~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~ip~~~  246 (626)
                      ..++.||.|+|+|++ ..||+.+... ....+.|.+|.+.+++||+++|.||++|+++.|.+.--..|..    .--+++
T Consensus        13 r~a~~GD~v~id~~~-~~dG~~~~~~-~~~~~~~~lg~~~~~~gf~~~L~G~k~Ge~~~~~~~~P~d~~~----~~laGK   86 (106)
T d1l1pa_          13 GAVEAEDRVTIDFTG-SVDGEEFEGG-KASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHA----ENLKGK   86 (106)
T ss_dssp             SSCCTTEEEEEEEEC-CSSSSCCSTT-EEEEEEEEETTSCCCTTHHHHTTSCCTTCCEEEEECCCSSCCC----TTTTTC
T ss_pred             ccccCCCEEEEEEEE-EECCEECCCC-cccceEEEecCCCccchHHHHhcCCCCCceEEEEEEeCCCCCc----hhhCCC
Confidence            457789999999998 5688877633 2356899999999999999999999999999999974343431    113678


Q ss_pred             eEEEEEEEeeEEe
Q 006908          247 EVHFEVELVHLIQ  259 (626)
Q Consensus       247 ~l~~~v~l~~~~~  259 (626)
                      .+.|+|+|+++.+
T Consensus        87 ~v~f~V~v~~i~~   99 (106)
T d1l1pa_          87 AAKFAINLKKVEE   99 (106)
T ss_dssp             CEEEEEEEEEEEC
T ss_pred             EEEEEEEEEEecc
Confidence            9999999999864

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=1.8e-07  Score=79.74  Aligned_cols=84  Identities=12%  Similarity=0.101  Sum_probs=68.1

Q ss_pred             HHHHHhhhchhhcc---ccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006908          398 AEKIRVTGNRLFKE---GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL  474 (626)
Q Consensus       398 a~~~k~~Gn~~f~~---g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL  474 (626)
                      +..+.+.|..+++.   +++.+|+..|++++.    ..|.+         ....+++|+|.||.++|+|.+|+.++.++|
T Consensus        33 ~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~----~~~~~---------~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL   99 (122)
T d1nzna_          33 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP----KGSKE---------EQRDYVFYLAVGNYRLKEYEKALKYVRGLL   99 (122)
T ss_dssp             HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT----TSCHH---------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHh----ccCCc---------hHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            45667788888864   467789999999987    33322         224589999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHc
Q 006908          475 DANPAHVKGLYRRGMAYMAL  494 (626)
Q Consensus       475 ~~dp~~~ka~~~~g~a~~~l  494 (626)
                      +++|++..|+..++.+...+
T Consensus       100 ~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_         100 QTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HHCTTCHHHHHHHHHHHHHH
T ss_pred             HhCcCCHHHHHHHHHHHHHH
Confidence            99999999998888776543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.47  E-value=7e-07  Score=75.03  Aligned_cols=83  Identities=18%  Similarity=0.239  Sum_probs=69.9

Q ss_pred             hHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 006908          447 NLLHLNVAACLLKLG---ECRKSIEACNKVLDANPAHV-KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAAL  522 (626)
Q Consensus       447 ~~~~~Nla~~~~kl~---~~~~A~~~~~~aL~~dp~~~-ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l  522 (626)
                      ....+|.|.|+.+..   +..+|+..+..++..+|.+. .++|.+|.+|+++|+|+.|+++++++|+++|+| ..+....
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n-~qA~~L~  113 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN-KQVGALK  113 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCc-HHHHHHH
Confidence            346788888888765   46799999999999998764 799999999999999999999999999999998 5666666


Q ss_pred             HHHHHHHH
Q 006908          523 SKLKKQRQ  530 (626)
Q Consensus       523 ~~l~~~~~  530 (626)
                      ..++.++.
T Consensus       114 ~~Ie~~~~  121 (124)
T d2pqrb1         114 SMVEDKIQ  121 (124)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            66665544

>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Vibrio cholerae [TaxId: 666]

Probab=98.45  E-value=1.3e-07  Score=79.39  Aligned_cols=87  Identities=18%  Similarity=0.123  Sum_probs=69.5

Q ss_pred             CCCCCCCeEEEEEEEEeCCCcEEEecCCCccEEEEcCCCCccchHHHhhccCCCCcEEEEEEeCCccCCCCCCCCCCCcc
Q 006908          167 ETPRAPYEVKAWISAKTGDGKLILSHREGEPYFFTFGKSEVPKGLEMGIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCE  246 (626)
Q Consensus       167 ~~~~~g~~V~v~y~~~~~~g~~~~s~~~~~p~~~~~g~g~~~~gle~~l~~mk~Ge~~~~~v~~~~~~g~~~~~~ip~~~  246 (626)
                      ..++.||.|+|+|++. .||..+... ....+.|.+|.+.++|||+++|.||++|+++.|.+.--.-|...   . -+++
T Consensus        22 r~a~~gD~v~id~~~~-~dG~~~~~~-~~~~~~~~lg~~~~~~~f~~~L~G~k~Ge~~~~~~~~Ped~~~~---~-laGk   95 (113)
T d1t11a3          22 EAAENGKRVSIDFVGS-IDGVEFEGG-KAENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAE---N-LKGK   95 (113)
T ss_dssp             CCCCTTCEEEEEEEEE-SSSSCCTTC-EEEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCT---T-TSSC
T ss_pred             ccccCCCEEEEEEEEE-ECCEEccCC-ccceEEEEeccccccccHHHhhcCCcCCCEEEEEEeCCCcCCcc---c-cCCC
Confidence            3578999999999984 688877643 33678999999999999999999999999999888743333311   1 2678


Q ss_pred             eEEEEEEEeeEEe
Q 006908          247 EVHFEVELVHLIQ  259 (626)
Q Consensus       247 ~l~~~v~l~~~~~  259 (626)
                      ++.|.|+|+++..
T Consensus        96 ~~~f~v~v~~Ik~  108 (113)
T d1t11a3          96 AAKFAIKVNKVEA  108 (113)
T ss_dssp             EEEECCCEEEEEE
T ss_pred             eEEEEEEEEEEEe
Confidence            9999999999864

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.43  E-value=9.1e-07  Score=88.60  Aligned_cols=118  Identities=19%  Similarity=0.128  Sum_probs=100.9

Q ss_pred             HHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCC--HHHHHHHHHHH
Q 006908          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE--CRKSIEACNKV  473 (626)
Q Consensus       396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~--~~~A~~~~~~a  473 (626)
                      .....+...+..+...+++.+|+.+|++++.    .+|.+           ..++.++|.++..+++  +.+|+..|.++
T Consensus        71 ~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~----~~pk~-----------~~~~~~~~~~~~~~~~~~~~~a~~~~~~a  135 (334)
T d1dcea1          71 EVLQHLETEKSPEESAALVKAELGFLESCLR----VNPKS-----------YGTWHHRCWLLSRLPEPNWARELELCARF  135 (334)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH----HCTTC-----------HHHHHHHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred             HHHHHHhhhcchHHHHHHHHHHHHHHHHHHH----hCCCc-----------HHHHHHhhHHHHHhccccHHHHHHHHHHH
Confidence            3445667778888899999999999999999    67766           4588999999888875  89999999999


Q ss_pred             HHhCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 006908          474 LDANPAHVKGL-YRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (626)
Q Consensus       474 L~~dp~~~ka~-~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~  529 (626)
                      ++++|.+..++ +++|.++...+.+++|+..++++++++|.+ ..+...+..+...+
T Consensus       136 l~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~-~~a~~~l~~~~~~~  191 (334)
T d1dcea1         136 LEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN-YSSWHYRSCLLPQL  191 (334)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC-HHHHHHHHHHHHHH
T ss_pred             HhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHh
Confidence            99999999986 578899999999999999999999999998 67777777765443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.42  E-value=3.9e-07  Score=89.76  Aligned_cols=110  Identities=13%  Similarity=0.114  Sum_probs=91.8

Q ss_pred             HHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Q 006908          396 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK-LGECRKSIEACNKVL  474 (626)
Q Consensus       396 ~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~k-l~~~~~A~~~~~~aL  474 (626)
                      ..+..+.+.|+.+.+.|++++|+..|++++.++.....         ......++.++|.++.. +++|.+|+..+.+|+
T Consensus        75 ~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~  145 (290)
T d1qqea_          75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ---------FRRGANFKFELGEILENDLHDYAKAIDCYELAG  145 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhccc---------chhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Confidence            35778889999999999999999999999997654321         11235678899988865 699999999999999


Q ss_pred             HhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 006908          475 DANPA------HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       475 ~~dp~------~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      .+.+.      ...++.++|.++..+|+|++|+..|++++.+.|.+
T Consensus       146 ~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~  191 (290)
T d1qqea_         146 EWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN  191 (290)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccc
Confidence            87432      25679999999999999999999999999998775

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.37  E-value=3.7e-07  Score=80.28  Aligned_cols=73  Identities=16%  Similarity=0.191  Sum_probs=63.4

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006908          456 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMAL----------GEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (626)
Q Consensus       456 ~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~l----------g~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l  525 (626)
                      .+.+++.|++|+..+++|++++|+++.+|+++|.++..+          +.+++|+..|++|++++|++ ..+...+..+
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~-~~a~~~lG~~   84 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK-DEAVWCIGNA   84 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHH
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchh-hHHHhhHHHH
Confidence            356778899999999999999999999999999999865          55689999999999999998 6788888777


Q ss_pred             HHHH
Q 006908          526 KKQR  529 (626)
Q Consensus       526 ~~~~  529 (626)
                      ...+
T Consensus        85 y~~~   88 (145)
T d1zu2a1          85 YTSF   88 (145)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            5443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.27  E-value=5.3e-07  Score=87.64  Aligned_cols=94  Identities=13%  Similarity=0.116  Sum_probs=83.2

Q ss_pred             hhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 006908          404 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG  483 (626)
Q Consensus       404 ~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka  483 (626)
                      ++..++++|++++|+..|+++++    .+|.+           ..++.+++.+++.+|+|++|+..++++++++|++..+
T Consensus         2 q~~~aL~~G~l~eAl~~l~~al~----~~P~d-----------~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~   66 (264)
T d1zbpa1           2 QWKNALSEGQLQQALELLIEAIK----ASPKD-----------ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG   66 (264)
T ss_dssp             CHHHHTTTTCHHHHHHHHHHHHH----TCTTC-----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             hHHHHHHCCCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHH
Confidence            46678999999999999999999    88888           5689999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 006908          484 LYRRGMAYMALGEFEEAQRDFEMMMKVDK  512 (626)
Q Consensus       484 ~~~~g~a~~~lg~~~eA~~~~~kAl~l~P  512 (626)
                      +..++.++...+..+++...+.++..+.+
T Consensus        67 ~~~l~~ll~a~~~~~~a~~~~~~~~~~~~   95 (264)
T d1zbpa1          67 ASQLRHLVKAAQARKDFAQGAATAKVLGE   95 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCCEECCCS
T ss_pred             HHHHHHHHHhccccHHHHHHhhhhhcccC
Confidence            99999999988888887776666555543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.16  E-value=1.3e-05  Score=79.75  Aligned_cols=120  Identities=12%  Similarity=-0.010  Sum_probs=86.8

Q ss_pred             cHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHH----------HcCCHHHHHHHHHHHHHhCCCCHH
Q 006908          413 KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLL----------KLGECRKSIEACNKVLDANPAHVK  482 (626)
Q Consensus       413 ~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~----------kl~~~~~A~~~~~~aL~~dp~~~k  482 (626)
                      .+++|+..|.++|.    ++|++.           .+|++++.++.          ..+++.+|+..++++++.+|.+..
T Consensus        44 ~~~~al~~~~~~l~----~~P~~~-----------~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~  108 (334)
T d1dcea1          44 LDESVLELTSQILG----ANPDFA-----------TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG  108 (334)
T ss_dssp             CSHHHHHHHHHHHH----HCTTCH-----------HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             ccHHHHHHHHHHHH----HCCCcH-----------HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHH
Confidence            45899999999999    788773           35555555544          445589999999999999999999


Q ss_pred             HHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCC
Q 006908          483 GLYRRGMAYMALGE--FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKP  548 (626)
Q Consensus       483 a~~~~g~a~~~lg~--~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  548 (626)
                      +++.+|.++..+++  +++|+..++++++++|.+.......+..+........ .....+...+...+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~-~Al~~~~~~i~~~p  175 (334)
T d1dcea1         109 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPA-EELAFTDSLITRNF  175 (334)
T ss_dssp             HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHH-HHHHHHHTTTTTTC
T ss_pred             HHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccH-HHHHHHHHHHHcCC
Confidence            99999999999876  8999999999999999984333333333333222222 22344555555443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=7.7e-06  Score=80.40  Aligned_cols=105  Identities=16%  Similarity=0.086  Sum_probs=88.3

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~  476 (626)
                      .++....+|..++..|++++|+..|++|+.    ..|.++.      .....++.++|.||..+|+|.+|+..+.+++.+
T Consensus        11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~----~~~~~~~------~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   80 (366)
T d1hz4a_          11 HAEFNALRAQVAINDGNPDEAERLAKLALE----ELPPGWF------YSRIVATSVLGEVLHCKGELTRSLALMQQTEQM   80 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----TCCTTCH------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----hCcCCCc------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            455566679999999999999999999999    4554432      223568899999999999999999999999987


Q ss_pred             CCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 006908          477 NPAH------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVD  511 (626)
Q Consensus       477 dp~~------~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~  511 (626)
                      .+..      ..+++.++.++...+++..|...+.+++.+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~  121 (366)
T d1hz4a_          81 ARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI  121 (366)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6432      5688999999999999999999999999863

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.05  E-value=4.2e-06  Score=82.39  Aligned_cols=104  Identities=14%  Similarity=0.040  Sum_probs=86.3

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA-  476 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~-  476 (626)
                      +..+...|..+...++++.|...|.+++.    ..+.+       .......+.|+|.+++.+|++.+|+..+.+++.. 
T Consensus       213 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  281 (366)
T d1hz4a_         213 SNANKVRVIYWQMTGDKAAAANWLRHTAK----PEFAN-------NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENA  281 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHSCC----CCCTT-------CGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHH----hcccc-------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            44566678888899999999999999887    33332       1233457889999999999999999999999854 


Q ss_pred             -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 006908          477 -----NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK  512 (626)
Q Consensus       477 -----dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P  512 (626)
                           .|..+.+++.+|.+|..+|++++|+..|++|+++.+
T Consensus       282 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         282 RSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             hhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence                 356688999999999999999999999999999854

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.00  E-value=8.4e-06  Score=72.04  Aligned_cols=81  Identities=17%  Similarity=0.022  Sum_probs=64.8

Q ss_pred             HHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006908          394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV  473 (626)
Q Consensus       394 ~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~a  473 (626)
                      ....+..+.+.|..+++.|+|++|+..|+++|.+++.......+    .......+|+|+|.||.++|++++|+.+|.+|
T Consensus        51 ~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~----~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~A  126 (156)
T d2hr2a1          51 AGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD----EGKLWISAVYSRALALDGLGRGAEAMPEFKKV  126 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST----HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccc----ccchhHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            34457788899999999999999999999999976543222211    12234568999999999999999999999999


Q ss_pred             HHhCC
Q 006908          474 LDANP  478 (626)
Q Consensus       474 L~~dp  478 (626)
                      +++.|
T Consensus       127 l~l~~  131 (156)
T d2hr2a1         127 VEMIE  131 (156)
T ss_dssp             HHHHH
T ss_pred             HHhhH
Confidence            99865

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.91  E-value=2e-05  Score=76.04  Aligned_cols=70  Identities=17%  Similarity=0.148  Sum_probs=62.3

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006908          455 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL  525 (626)
Q Consensus       455 ~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l  525 (626)
                      .-.++.|++++|+..+.++++.+|+++.+++.+|++|+.+|++++|++.|+++++++|++ ..+...+..+
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~-~~~~~~l~~l   73 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY-LPGASQLRHL   73 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG-HHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHH
Confidence            345678999999999999999999999999999999999999999999999999999997 4555555544

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.74  E-value=9.3e-05  Score=66.81  Aligned_cols=80  Identities=10%  Similarity=-0.021  Sum_probs=69.1

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHcCCHHHHHHHH
Q 006908          447 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAH----------------------VKGLYRRGMAYMALGEFEEAQRDF  504 (626)
Q Consensus       447 ~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~----------------------~ka~~~~g~a~~~lg~~~eA~~~~  504 (626)
                      ...+++.|......|++.+|+..|.+||.+.+..                      ..++.+++.++..+|++++|+.++
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~   90 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL   90 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            4567889999999999999999999999987633                      368999999999999999999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHH
Q 006908          505 EMMMKVDKSSEPDATAALSKLKK  527 (626)
Q Consensus       505 ~kAl~l~P~~~~~~~~~l~~l~~  527 (626)
                      ++++.++|.+ ..++..|..+..
T Consensus        91 ~~al~~~P~~-e~~~~~l~~al~  112 (179)
T d2ff4a2          91 EALTFEHPYR-EPLWTQLITAYY  112 (179)
T ss_dssp             HHHHHHSTTC-HHHHHHHHHHHH
T ss_pred             HHHHHhCCcc-HHHHHHHHHHHH
Confidence            9999999998 466666665543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=4e-05  Score=81.08  Aligned_cols=84  Identities=10%  Similarity=-0.037  Sum_probs=76.5

Q ss_pred             HHHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006908          397 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA  476 (626)
Q Consensus       397 ~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~  476 (626)
                      -...+...|..+..+++|++|+.+|.+|+.    +.|.+           ..+|+|+|.++...|++.+|+.+|.+||.+
T Consensus       151 ~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~----l~P~~-----------~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~  215 (497)
T d1ya0a1         151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQ----LVPSN-----------GQPYNQLAILASSKGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTB-----------SHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHH----HCCCc-----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            345677899999999999999999999999    67776           568999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcC
Q 006908          477 NPAHVKGLYRRGMAYMALG  495 (626)
Q Consensus       477 dp~~~ka~~~~g~a~~~lg  495 (626)
                      +|..+.|+.+++.++....
T Consensus       216 ~~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         216 KFPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             SBCCHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHhh
Confidence            9999999999999987654

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.67  E-value=7e-05  Score=62.51  Aligned_cols=77  Identities=12%  Similarity=0.025  Sum_probs=57.6

Q ss_pred             HHhhhchhhcc---ccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006908          401 IRVTGNRLFKE---GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN  477 (626)
Q Consensus       401 ~k~~Gn~~f~~---g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~d  477 (626)
                      .++.|..+.+.   .+..+|+.+++.+++    ..|.+          ...+++++|.+|+++|+|.+|+.+|.++|+++
T Consensus        38 ~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~----~~p~~----------~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie  103 (124)
T d2pqrb1          38 RFNYAWGLIKSTDVNDERLGVKILTDIYK----EAESR----------RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE  103 (124)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHHHHHHHHH----HCGGG----------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHh----cCchh----------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence            34445455433   356788888888876    23322          23589999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHH
Q 006908          478 PAHVKGLYRRGMAY  491 (626)
Q Consensus       478 p~~~ka~~~~g~a~  491 (626)
                      |+|..|...+-.+-
T Consensus       104 P~n~qA~~L~~~Ie  117 (124)
T d2pqrb1         104 RNNKQVGALKSMVE  117 (124)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHH
Confidence            99998876655443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.49  E-value=0.0003  Score=68.90  Aligned_cols=66  Identities=8%  Similarity=-0.034  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCC
Q 006908          449 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYM-ALGEFEEAQRDFEMMMKVDKSS  514 (626)
Q Consensus       449 ~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~-~lg~~~eA~~~~~kAl~l~P~~  514 (626)
                      +|...+.+..+.+++..|+..+.+++...|.+...+...|.... ..++.+.|...|+++++.+|.+
T Consensus       136 ~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~  202 (308)
T d2onda1         136 VYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI  202 (308)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhh
Confidence            34444555555555555555555555555555555555544332 2345555555555555555554

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.33  E-value=0.00081  Score=65.61  Aligned_cols=100  Identities=10%  Similarity=-0.056  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHH
Q 006908          448 LLHLNVAACLLK-LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE---PDATAALS  523 (626)
Q Consensus       448 ~~~~Nla~~~~k-l~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~---~~~~~~l~  523 (626)
                      .++.+.|....+ .++...|...+.+++..+|.++..+...+..+...|+++.|+..|++|+...|.+.   ..+.....
T Consensus       169 ~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~  248 (308)
T d2onda1         169 HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFL  248 (308)
T ss_dssp             HHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            456666665443 57888888889999888888888888888888888999999999999888776442   23444444


Q ss_pred             HHHHHHHHHHHHHHHHHHccccCCC
Q 006908          524 KLKKQRQEVESKARKQFKGLFDKKP  548 (626)
Q Consensus       524 ~l~~~~~~~~~~~~~~~~~~~~~~~  548 (626)
                      ..+...... ...++.++++....+
T Consensus       249 ~fE~~~G~~-~~~~~~~~r~~~~~~  272 (308)
T d2onda1         249 AFESNIGDL-ASILKVEKRRFTAFR  272 (308)
T ss_dssp             HHHHHHSCH-HHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCH-HHHHHHHHHHHHHCc
Confidence            444333322 333556666655443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.20  E-value=0.0017  Score=61.28  Aligned_cols=97  Identities=18%  Similarity=0.205  Sum_probs=82.1

Q ss_pred             HHHHHhhhchhhccccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 006908          398 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK----LGECRKSIEACNKV  473 (626)
Q Consensus       398 a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~k----l~~~~~A~~~~~~a  473 (626)
                      ++.+...|..++++++|.+|+.+|++|.+    .  .+           ..++.+||.+|..    ..++..|...+..+
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~----~--g~-----------~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a   64 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACD----L--KE-----------NSGCFNLGVLYYQGQGVEKNLKKAASFYAKA   64 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----T--TC-----------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----C--CC-----------HHHHHHHHHHHHcCCCcchhHHHHHHhhccc
Confidence            45778899999999999999999999987    2  12           3578899999998    77999999999998


Q ss_pred             HHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCC
Q 006908          474 LDANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVDKS  513 (626)
Q Consensus       474 L~~dp~~~ka~~~~g~a~~~----lg~~~eA~~~~~kAl~l~P~  513 (626)
                      ...  .++.+.+++|..+..    ....+.|...|+++.+..+.
T Consensus        65 ~~~--~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~  106 (265)
T d1ouva_          65 CDL--NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA  106 (265)
T ss_dssp             HHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             ccc--cccchhhccccccccccccchhhHHHHHHHhhhhhhhhh
Confidence            765  588999999998876    57889999999999987654

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.94  E-value=0.0049  Score=51.86  Aligned_cols=82  Identities=12%  Similarity=0.004  Sum_probs=60.6

Q ss_pred             ccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 006908          412 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK----LGECRKSIEACNKVLDANPAHVKGLYRR  487 (626)
Q Consensus       412 g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~k----l~~~~~A~~~~~~aL~~dp~~~ka~~~~  487 (626)
                      .++++|+..|+++.+.      .+           ..+++++|.+|+.    ..++.+|+..+.++.+.  .++.|.+++
T Consensus        37 ~~~~~a~~~~~~aa~~------g~-----------~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~L   97 (133)
T d1klxa_          37 INKQKLFQYLSKACEL------NS-----------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLIL   97 (133)
T ss_dssp             SCHHHHHHHHHHHHHT------TC-----------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             cCHHHHHHHHhhhhcc------cc-----------hhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHH
Confidence            4567777777777651      11           3467778888776    45788888888888765  578888888


Q ss_pred             HHHHHH----cCCHHHHHHHHHHHHhcCC
Q 006908          488 GMAYMA----LGEFEEAQRDFEMMMKVDK  512 (626)
Q Consensus       488 g~a~~~----lg~~~eA~~~~~kAl~l~P  512 (626)
                      |.+|..    ..++.+|+.+|++|.++..
T Consensus        98 g~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          98 GYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            888887    4678888888888888753

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=96.76  E-value=0.0034  Score=59.17  Aligned_cols=74  Identities=14%  Similarity=0.146  Sum_probs=61.4

Q ss_pred             hHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHH
Q 006908          447 NLLHLNVAACLLK----LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA----LGEFEEAQRDFEMMMKVDKSSEPDA  518 (626)
Q Consensus       447 ~~~~~Nla~~~~k----l~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a~~~----lg~~~eA~~~~~kAl~l~P~~~~~~  518 (626)
                      ..+++|+|.+|..    .+++.+|+..+.++.+.  .++.|+|++|.+|..    ..++++|+.+|++|..+.+.   .+
T Consensus       178 ~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~---~A  252 (265)
T d1ouva_         178 SPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK---GA  252 (265)
T ss_dssp             HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH---HH
T ss_pred             cccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH---HH
Confidence            4578899999988    67999999999999887  589999999999986    45899999999999998754   35


Q ss_pred             HHHHHHH
Q 006908          519 TAALSKL  525 (626)
Q Consensus       519 ~~~l~~l  525 (626)
                      ...|..|
T Consensus       253 ~~~l~~l  259 (265)
T d1ouva_         253 CDILKQL  259 (265)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHHH
Confidence            5555444

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.41  E-value=0.015  Score=48.57  Aligned_cols=92  Identities=14%  Similarity=0.106  Sum_probs=71.1

Q ss_pred             cccHHHHHHHHHHHHHhcccCCCCChhHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006908          411 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA  490 (626)
Q Consensus       411 ~g~~~~A~~~y~~al~~l~~~~p~~~ee~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~aL~~dp~~~ka~~~~g~a  490 (626)
                      ..++++|+.+|++|.+    ..  +           ..++++++.  ....++.+|+..+.++.+.  .++.|.+++|..
T Consensus         6 ~kd~~~A~~~~~kaa~----~g--~-----------~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~   64 (133)
T d1klxa_           6 KKDLKKAIQYYVKACE----LN--E-----------MFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDF   64 (133)
T ss_dssp             HHHHHHHHHHHHHHHH----TT--C-----------TTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHH----CC--C-----------hhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHh
Confidence            3589999999999987    22  1           124555653  4467899999999999775  689999999999


Q ss_pred             HHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006908          491 YMA----LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK  526 (626)
Q Consensus       491 ~~~----lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~  526 (626)
                      |..    ..++++|+.+|++|.+...   +.+...|..+.
T Consensus        65 y~~g~~~~~d~~~A~~~~~~aa~~g~---~~a~~~Lg~~y  101 (133)
T d1klxa_          65 YENGKYVKKDLRKAAQYYSKACGLND---QDGCLILGYKQ  101 (133)
T ss_dssp             HHHCSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred             hhhccccchhhHHHHHHHhhhhccCc---chHHHHHHHHH
Confidence            987    5679999999999998753   45666666554

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.41  E-value=0.27  Score=38.01  Aligned_cols=39  Identities=15%  Similarity=0.117  Sum_probs=34.4

Q ss_pred             hhHHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhccc
Q 006908          392 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH  430 (626)
Q Consensus       392 ~e~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~~  430 (626)
                      +..+..|..+..+|..+-+.|+|.+|+.+|..|+.+|..
T Consensus         9 ~~~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~   47 (93)
T d1wfda_           9 DSDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQ   47 (93)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            345778999999999999999999999999999987654

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.38  E-value=2.1  Score=41.03  Aligned_cols=45  Identities=20%  Similarity=0.146  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 006908          484 LYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR  529 (626)
Q Consensus       484 ~~~~g~a~~~lg~~~eA~~~~~kAl~l~P~~~~~~~~~l~~l~~~~  529 (626)
                      +--.-..+...|.+++.+..|..++.+++.+ ..+...|..+..+.
T Consensus       102 l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~-~~~~~~L~~lyak~  146 (336)
T d1b89a_         102 LEELINYYQDRGYFEELITMLEAALGLERAH-MGMFTELAILYSKF  146 (336)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC-HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHcCCccc-hHHHHHHHHHHHHh
Confidence            3344556667788888888888888887776 45656666555443

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.85  E-value=0.61  Score=34.37  Aligned_cols=36  Identities=22%  Similarity=0.252  Sum_probs=31.8

Q ss_pred             HHHHHHHHHhhhchhhccccHHHHHHHHHHHHHhcc
Q 006908          394 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFN  429 (626)
Q Consensus       394 ~~~~a~~~k~~Gn~~f~~g~~~~A~~~y~~al~~l~  429 (626)
                      -+..|..+-.++..+.+.|+|++||.++++|..++.
T Consensus         4 PLN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~   39 (83)
T d2crba1           4 PLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLS   39 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            467788888899999999999999999999998654